Multiple sequence alignment - TraesCS3A01G210300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G210300 chr3A 100.000 8821 0 0 1 8821 375825152 375816332 0.000000e+00 16290
1 TraesCS3A01G210300 chr3B 93.259 6809 298 55 20 6754 380002322 379995601 0.000000e+00 9882
2 TraesCS3A01G210300 chr3B 92.774 1896 75 22 6910 8778 379995604 379993744 0.000000e+00 2686
3 TraesCS3A01G210300 chr3D 94.528 4331 136 34 2454 6754 287058437 287054178 0.000000e+00 6591
4 TraesCS3A01G210300 chr3D 91.806 2453 137 29 1 2428 287060843 287058430 0.000000e+00 3358
5 TraesCS3A01G210300 chr3D 96.113 1492 52 5 6910 8396 287054181 287052691 0.000000e+00 2429
6 TraesCS3A01G210300 chr3D 92.308 169 11 1 6753 6919 313908763 313908595 1.140000e-58 239
7 TraesCS3A01G210300 chr3D 89.344 122 7 2 8663 8778 287029878 287029757 1.980000e-31 148
8 TraesCS3A01G210300 chr3D 96.296 81 3 0 8591 8671 287050311 287050231 5.560000e-27 134
9 TraesCS3A01G210300 chr6D 93.976 166 6 2 6752 6915 431160667 431160830 1.900000e-61 248
10 TraesCS3A01G210300 chr6D 90.164 183 12 4 6753 6932 178849199 178849378 5.320000e-57 233
11 TraesCS3A01G210300 chr4B 93.333 165 9 1 6753 6915 178081102 178081266 8.850000e-60 243
12 TraesCS3A01G210300 chr4B 91.429 175 10 4 6749 6921 260063226 260063397 1.480000e-57 235
13 TraesCS3A01G210300 chr1B 92.814 167 12 0 6747 6913 586282125 586282291 8.850000e-60 243
14 TraesCS3A01G210300 chrUn 93.293 164 10 1 6753 6916 96478384 96478222 3.180000e-59 241
15 TraesCS3A01G210300 chr5A 93.252 163 9 1 6753 6913 322584011 322584173 1.140000e-58 239
16 TraesCS3A01G210300 chr2D 91.477 176 10 3 6750 6920 43687617 43687442 4.120000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G210300 chr3A 375816332 375825152 8820 True 16290 16290 100.00000 1 8821 1 chr3A.!!$R1 8820
1 TraesCS3A01G210300 chr3B 379993744 380002322 8578 True 6284 9882 93.01650 20 8778 2 chr3B.!!$R1 8758
2 TraesCS3A01G210300 chr3D 287050231 287060843 10612 True 3128 6591 94.68575 1 8671 4 chr3D.!!$R3 8670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.027979 CCTCACGCACACACACAAAG 59.972 55.000 0.00 0.0 0.00 2.77 F
1368 1395 0.034186 CATGCAAGTTAGCCCTGGGA 60.034 55.000 19.27 0.0 0.00 4.37 F
1566 1593 0.250513 CCAGTGTAGCTGTTCCTCCC 59.749 60.000 0.00 0.0 43.55 4.30 F
1567 1594 0.250513 CAGTGTAGCTGTTCCTCCCC 59.749 60.000 0.00 0.0 40.27 4.81 F
3251 3288 0.905357 TAGAAGTTCCCTGCTGAGGC 59.095 55.000 0.00 0.0 38.17 4.70 F
3786 3824 0.512952 CTACAGTTGGTTGACGCTGC 59.487 55.000 0.00 0.0 32.65 5.25 F
4260 4299 1.260538 TGCACCTCCATCTCTCGCTT 61.261 55.000 0.00 0.0 0.00 4.68 F
5307 5388 1.486310 TCTTTCTGCCGAGCCATACAT 59.514 47.619 0.00 0.0 0.00 2.29 F
6760 6852 0.108756 GCACCGACAAGTACTCCCTC 60.109 60.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1551 0.034574 ACTGTTCCAGCCACAACACA 60.035 50.000 0.00 0.00 34.37 3.72 R
2681 2718 1.355381 TGAAGGAACACTGGATGCCAT 59.645 47.619 0.00 0.00 30.82 4.40 R
3532 3570 1.165270 GACCCAGCGCAAAATACTGT 58.835 50.000 11.47 0.00 0.00 3.55 R
3535 3573 1.330829 GCTAGACCCAGCGCAAAATAC 59.669 52.381 11.47 0.00 0.00 1.89 R
4996 5077 0.035820 GAGGTGGGCGTAAACATCCA 60.036 55.000 0.00 0.00 0.00 3.41 R
5224 5305 1.135112 TGCATGCATCTCGTCTACGTT 60.135 47.619 18.46 0.00 40.80 3.99 R
5364 5445 1.202188 GCGAGCAGGAAATTACCAAGC 60.202 52.381 0.00 0.00 34.86 4.01 R
7208 7305 0.474660 AAGCCTCCTCAGAGTTGGGT 60.475 55.000 5.17 5.17 38.58 4.51 R
8008 8105 1.200020 GTGCAGTTAGACAATGGTGCC 59.800 52.381 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.007076 TCACTAGGTGGAGATAGATCATGAC 58.993 44.000 0.00 0.00 33.87 3.06
47 48 2.364970 CCGAGATGCTCTGATTCCTCTT 59.635 50.000 0.00 0.00 0.00 2.85
56 57 5.664908 TGCTCTGATTCCTCTTCTCCTTTAT 59.335 40.000 0.00 0.00 0.00 1.40
77 78 2.433970 TCTGTGTGATGTGTGTTCCTCA 59.566 45.455 0.00 0.00 0.00 3.86
79 80 8.929104 TATCTGTGTGATGTGTGTTCCTCACG 62.929 46.154 0.00 0.00 41.62 4.35
87 88 1.087202 GTGTTCCTCACGCACACACA 61.087 55.000 0.00 0.00 40.53 3.72
89 90 1.087202 GTTCCTCACGCACACACACA 61.087 55.000 0.00 0.00 0.00 3.72
90 91 0.391793 TTCCTCACGCACACACACAA 60.392 50.000 0.00 0.00 0.00 3.33
92 93 0.027979 CCTCACGCACACACACAAAG 59.972 55.000 0.00 0.00 0.00 2.77
93 94 1.006086 CTCACGCACACACACAAAGA 58.994 50.000 0.00 0.00 0.00 2.52
94 95 1.004610 CTCACGCACACACACAAAGAG 60.005 52.381 0.00 0.00 0.00 2.85
95 96 1.006086 CACGCACACACACAAAGAGA 58.994 50.000 0.00 0.00 0.00 3.10
97 109 1.134818 ACGCACACACACAAAGAGAGA 60.135 47.619 0.00 0.00 0.00 3.10
105 117 3.826157 ACACACAAAGAGAGAGAGAGAGG 59.174 47.826 0.00 0.00 0.00 3.69
117 129 3.053544 AGAGAGAGAGGGGAATTACGACA 60.054 47.826 0.00 0.00 0.00 4.35
118 130 3.700038 GAGAGAGAGGGGAATTACGACAA 59.300 47.826 0.00 0.00 0.00 3.18
120 132 4.081586 AGAGAGAGGGGAATTACGACAAAC 60.082 45.833 0.00 0.00 0.00 2.93
123 135 3.073356 AGAGGGGAATTACGACAAACCAA 59.927 43.478 0.00 0.00 0.00 3.67
124 136 4.014406 GAGGGGAATTACGACAAACCAAT 58.986 43.478 0.00 0.00 0.00 3.16
125 137 4.412843 AGGGGAATTACGACAAACCAATT 58.587 39.130 0.00 0.00 0.00 2.32
154 166 8.034058 AGAGACATACAAAAATTAGCACTGTC 57.966 34.615 0.00 0.00 0.00 3.51
169 181 3.317150 CACTGTCGTTGTGCTCTCATTA 58.683 45.455 0.00 0.00 0.00 1.90
171 183 4.032217 CACTGTCGTTGTGCTCTCATTATC 59.968 45.833 0.00 0.00 0.00 1.75
178 190 5.121811 GTTGTGCTCTCATTATCAGGTGAT 58.878 41.667 0.00 0.00 38.51 3.06
187 199 3.297134 TTATCAGGTGATTGCTTCCCC 57.703 47.619 0.00 0.00 36.05 4.81
195 207 2.231235 GTGATTGCTTCCCCGACATTTT 59.769 45.455 0.00 0.00 0.00 1.82
212 227 7.038659 CGACATTTTCTAATGACTCCTCTCTT 58.961 38.462 4.99 0.00 43.12 2.85
238 253 4.451150 CGTAGGGGCTTGCGCTGA 62.451 66.667 9.73 0.00 36.09 4.26
255 270 2.282251 AGCGAGGGTGACGACAGA 60.282 61.111 0.00 0.00 0.00 3.41
268 283 1.014044 CGACAGATGTTGGTGGACCG 61.014 60.000 0.00 0.00 39.43 4.79
284 299 2.210116 GACCGTGTATTGGCGATTCAT 58.790 47.619 0.00 0.00 0.00 2.57
312 327 3.242478 CGATGACCAACTCGAGAGTACTC 60.242 52.174 21.68 15.41 41.58 2.59
321 336 2.829458 AGAGTACTCGCGCCTCCC 60.829 66.667 17.07 0.00 34.09 4.30
351 366 1.070786 GGTCCTCCAAGTCGCACAA 59.929 57.895 0.00 0.00 0.00 3.33
358 373 1.071605 CCAAGTCGCACAACTCTAGC 58.928 55.000 0.00 0.00 0.00 3.42
363 378 4.988065 GCACAACTCTAGCGACCA 57.012 55.556 0.00 0.00 0.00 4.02
407 424 0.179100 CTGGCCACGTCGATTGATCT 60.179 55.000 0.00 0.00 0.00 2.75
410 427 0.103208 GCCACGTCGATTGATCTCCT 59.897 55.000 0.00 0.00 0.00 3.69
412 429 2.464865 CCACGTCGATTGATCTCCTTC 58.535 52.381 0.00 0.00 0.00 3.46
413 430 2.159240 CCACGTCGATTGATCTCCTTCA 60.159 50.000 0.00 0.00 0.00 3.02
414 431 2.854777 CACGTCGATTGATCTCCTTCAC 59.145 50.000 0.00 0.00 0.00 3.18
415 432 2.492088 ACGTCGATTGATCTCCTTCACA 59.508 45.455 0.00 0.00 0.00 3.58
419 436 3.382865 TCGATTGATCTCCTTCACAGAGG 59.617 47.826 0.00 0.00 38.20 3.69
428 445 2.570582 CTTCACAGAGGCGGAGGAGC 62.571 65.000 0.00 0.00 0.00 4.70
429 446 3.385384 CACAGAGGCGGAGGAGCA 61.385 66.667 0.00 0.00 39.27 4.26
431 448 2.186384 CAGAGGCGGAGGAGCAAG 59.814 66.667 0.00 0.00 39.27 4.01
438 455 1.680249 GGCGGAGGAGCAAGAAAAGAT 60.680 52.381 0.00 0.00 39.27 2.40
441 458 1.668237 GGAGGAGCAAGAAAAGATCGC 59.332 52.381 0.00 0.00 0.00 4.58
444 461 1.453155 GAGCAAGAAAAGATCGCCCA 58.547 50.000 0.00 0.00 0.00 5.36
464 481 5.337578 CCACAAGAGGGAAGAAACAAAAA 57.662 39.130 0.00 0.00 0.00 1.94
472 489 4.588951 AGGGAAGAAACAAAAATGAGGGTC 59.411 41.667 0.00 0.00 0.00 4.46
473 490 4.546570 GGAAGAAACAAAAATGAGGGTCG 58.453 43.478 0.00 0.00 0.00 4.79
500 517 3.787001 GCCGGTGGAGAAGGGGAG 61.787 72.222 1.90 0.00 0.00 4.30
505 522 1.064825 GGTGGAGAAGGGGAGTCAAA 58.935 55.000 0.00 0.00 0.00 2.69
556 576 8.299262 TCTCGCTTATTTCTTCATTAGTATGC 57.701 34.615 0.00 0.00 0.00 3.14
565 585 5.833082 TCTTCATTAGTATGCGAGGAGTTC 58.167 41.667 0.00 0.00 0.00 3.01
599 623 4.657824 CGTCACGCACGGGGAAGT 62.658 66.667 0.00 0.00 45.46 3.01
618 642 4.447138 AGTGAAGGTTGAACCATTACCA 57.553 40.909 17.83 3.81 41.95 3.25
622 646 5.944007 GTGAAGGTTGAACCATTACCACTAT 59.056 40.000 17.83 0.00 41.95 2.12
624 648 7.773690 GTGAAGGTTGAACCATTACCACTATAT 59.226 37.037 17.83 0.00 41.95 0.86
649 674 4.811555 TCAGTTTTGAAACGAGTCCATG 57.188 40.909 0.00 0.00 43.51 3.66
657 682 3.007940 TGAAACGAGTCCATGGTTCAGAT 59.992 43.478 12.58 0.12 0.00 2.90
661 686 4.003648 ACGAGTCCATGGTTCAGATTTTC 58.996 43.478 12.58 0.00 0.00 2.29
662 687 3.375299 CGAGTCCATGGTTCAGATTTTCC 59.625 47.826 12.58 0.00 0.00 3.13
663 688 4.593956 GAGTCCATGGTTCAGATTTTCCT 58.406 43.478 12.58 0.00 0.00 3.36
664 689 5.626809 CGAGTCCATGGTTCAGATTTTCCTA 60.627 44.000 12.58 0.00 0.00 2.94
665 690 6.332976 AGTCCATGGTTCAGATTTTCCTAT 57.667 37.500 12.58 0.00 0.00 2.57
666 691 6.735556 AGTCCATGGTTCAGATTTTCCTATT 58.264 36.000 12.58 0.00 0.00 1.73
667 692 7.184862 AGTCCATGGTTCAGATTTTCCTATTT 58.815 34.615 12.58 0.00 0.00 1.40
668 693 7.340487 AGTCCATGGTTCAGATTTTCCTATTTC 59.660 37.037 12.58 0.00 0.00 2.17
1096 1123 2.672478 CGCTCTCTCAGATTGGTTCGTT 60.672 50.000 0.00 0.00 0.00 3.85
1099 1126 1.656095 CTCTCAGATTGGTTCGTTCGC 59.344 52.381 0.00 0.00 0.00 4.70
1106 1133 4.668118 GGTTCGTTCGCCCGTCCA 62.668 66.667 0.00 0.00 0.00 4.02
1226 1253 2.442413 TGCTCTTATTTTGTTCCCGGG 58.558 47.619 16.85 16.85 0.00 5.73
1296 1323 0.396435 TGCTGTTCTCGTGATTGGGT 59.604 50.000 0.00 0.00 0.00 4.51
1368 1395 0.034186 CATGCAAGTTAGCCCTGGGA 60.034 55.000 19.27 0.00 0.00 4.37
1389 1416 3.861276 ATGACTCGGATCGTTGTGTAA 57.139 42.857 0.00 0.00 0.00 2.41
1435 1462 6.072112 TGCTGTGTTTCTAAAACTGAATCC 57.928 37.500 4.40 0.00 0.00 3.01
1462 1489 9.538508 CTGATCTGATGTGTGATACTATTTGAA 57.461 33.333 0.00 0.00 0.00 2.69
1470 1497 8.298030 TGTGTGATACTATTTGAATAGCATCG 57.702 34.615 14.64 0.00 41.52 3.84
1523 1550 7.573627 ACTTACGCTGTTTTATGAAGAACTTC 58.426 34.615 7.51 7.51 39.91 3.01
1524 1551 7.441458 ACTTACGCTGTTTTATGAAGAACTTCT 59.559 33.333 14.31 0.00 40.14 2.85
1525 1552 5.990408 ACGCTGTTTTATGAAGAACTTCTG 58.010 37.500 14.31 0.00 40.14 3.02
1526 1553 5.527582 ACGCTGTTTTATGAAGAACTTCTGT 59.472 36.000 14.31 7.05 40.14 3.41
1527 1554 5.848036 CGCTGTTTTATGAAGAACTTCTGTG 59.152 40.000 14.31 0.00 40.14 3.66
1528 1555 6.511767 CGCTGTTTTATGAAGAACTTCTGTGT 60.512 38.462 14.31 3.08 40.14 3.72
1529 1556 7.196331 GCTGTTTTATGAAGAACTTCTGTGTT 58.804 34.615 14.31 0.00 40.14 3.32
1530 1557 7.166473 GCTGTTTTATGAAGAACTTCTGTGTTG 59.834 37.037 14.31 2.16 40.14 3.33
1531 1558 8.050778 TGTTTTATGAAGAACTTCTGTGTTGT 57.949 30.769 14.31 0.00 40.14 3.32
1566 1593 0.250513 CCAGTGTAGCTGTTCCTCCC 59.749 60.000 0.00 0.00 43.55 4.30
1567 1594 0.250513 CAGTGTAGCTGTTCCTCCCC 59.749 60.000 0.00 0.00 40.27 4.81
1571 1598 2.062636 TGTAGCTGTTCCTCCCCTTTT 58.937 47.619 0.00 0.00 0.00 2.27
1572 1599 2.445525 TGTAGCTGTTCCTCCCCTTTTT 59.554 45.455 0.00 0.00 0.00 1.94
1595 1624 4.501071 TCCATTCTTACGAGTTACTTGGC 58.499 43.478 4.48 0.00 0.00 4.52
1664 1693 6.127897 CGAAGTGCCTTTCTAATTCCAATTCT 60.128 38.462 0.00 0.00 0.00 2.40
1732 1762 5.559770 TCAATCATCCAAACTCAGCTGTAA 58.440 37.500 14.67 0.00 0.00 2.41
1735 1765 3.072330 TCATCCAAACTCAGCTGTAACCA 59.928 43.478 14.67 0.00 0.00 3.67
1767 1797 9.120538 GTCTGATAATTTTACTAAATGGCTCCA 57.879 33.333 0.00 0.00 34.27 3.86
2057 2088 8.129211 CCCGACTCATAAATTTGTAATTTCCTC 58.871 37.037 0.00 0.00 0.00 3.71
2069 2100 5.305585 TGTAATTTCCTCGAGCTTCTGTTT 58.694 37.500 6.99 0.00 0.00 2.83
2089 2120 6.212955 TGTTTTTAGCTTGAGGTTTACATGC 58.787 36.000 0.00 0.00 38.24 4.06
2145 2176 9.745880 ACTATTCATTTTCATACCGTGTACTAG 57.254 33.333 0.00 0.00 0.00 2.57
2210 2241 4.764940 CTGTAACCGTTGTAAAGGAAACG 58.235 43.478 3.59 1.17 46.61 3.60
2452 2483 4.546674 TGAGTATGCTCATCTTGAGGGTA 58.453 43.478 9.69 0.00 45.94 3.69
2469 2500 5.311121 TGAGGGTAAACTGTTTCTATTCCCA 59.689 40.000 9.38 4.10 35.31 4.37
2476 2507 5.319043 ACTGTTTCTATTCCCACTTTCCA 57.681 39.130 0.00 0.00 0.00 3.53
2495 2526 7.559170 ACTTTCCATTTCCTCTCCAAATAGATG 59.441 37.037 0.00 0.00 0.00 2.90
2501 2532 4.820775 TCCTCTCCAAATAGATGCCTAGT 58.179 43.478 0.00 0.00 0.00 2.57
2667 2704 6.357367 AGTAAATACCTATGTTGGCCTTCAG 58.643 40.000 3.32 0.00 0.00 3.02
2680 2717 2.952310 GGCCTTCAGTTTCTTGACTGTT 59.048 45.455 0.00 0.00 45.64 3.16
2681 2718 4.134563 GGCCTTCAGTTTCTTGACTGTTA 58.865 43.478 0.00 0.00 45.64 2.41
2700 2737 2.134789 ATGGCATCCAGTGTTCCTTC 57.865 50.000 0.00 0.00 36.75 3.46
2708 2745 5.392380 GCATCCAGTGTTCCTTCAACTTATG 60.392 44.000 0.00 0.00 35.79 1.90
2715 2752 6.375455 AGTGTTCCTTCAACTTATGCTATTGG 59.625 38.462 0.00 0.00 35.79 3.16
2860 2897 7.658525 TTCAAGTATGCCATTGGTCATTAAT 57.341 32.000 14.90 0.00 0.00 1.40
2993 3030 5.783360 TGTCATTTTGAGGACCCTAGTAGAA 59.217 40.000 0.00 0.00 33.09 2.10
3249 3286 3.330267 GTTGTAGAAGTTCCCTGCTGAG 58.670 50.000 0.00 0.00 0.00 3.35
3251 3288 0.905357 TAGAAGTTCCCTGCTGAGGC 59.095 55.000 0.00 0.00 38.17 4.70
3285 3322 7.177216 TGCCTTTTGTTAATCTGATGTTGAGAT 59.823 33.333 0.00 0.00 0.00 2.75
3417 3454 7.333528 TGAATTATGTTCAGGTATTCCTTGC 57.666 36.000 0.00 0.00 43.07 4.01
3474 3512 6.367969 CGCACTTAAACTATGGGGTATATGTC 59.632 42.308 0.00 0.00 0.00 3.06
3523 3561 2.164338 GGCGGTTTGGTTAATCAAGGA 58.836 47.619 0.66 0.00 0.00 3.36
3531 3569 7.576856 CGGTTTGGTTAATCAAGGAAAGCTAAT 60.577 37.037 0.66 0.00 0.00 1.73
3532 3570 8.745590 GGTTTGGTTAATCAAGGAAAGCTAATA 58.254 33.333 0.66 0.00 0.00 0.98
3533 3571 9.569167 GTTTGGTTAATCAAGGAAAGCTAATAC 57.431 33.333 0.66 0.00 0.00 1.89
3534 3572 8.871629 TTGGTTAATCAAGGAAAGCTAATACA 57.128 30.769 0.00 0.00 0.00 2.29
3535 3573 8.506168 TGGTTAATCAAGGAAAGCTAATACAG 57.494 34.615 0.00 0.00 0.00 2.74
3561 3599 1.362406 GCGCTGGGTCTAGCTTTCAC 61.362 60.000 0.00 0.00 41.51 3.18
3598 3636 3.501828 TCTGTGGTCACAAATTTCATCCG 59.498 43.478 5.27 0.00 41.33 4.18
3616 3654 3.738982 TCCGACAAGCTTGATTCTTGAA 58.261 40.909 32.50 6.73 42.52 2.69
3639 3677 9.853555 TGAATATTTCAATGGATTACAACACAC 57.146 29.630 0.00 0.00 36.59 3.82
3683 3721 4.339247 CCAGAGATTGTTGTCCAACTTGTT 59.661 41.667 11.14 0.00 41.67 2.83
3786 3824 0.512952 CTACAGTTGGTTGACGCTGC 59.487 55.000 0.00 0.00 32.65 5.25
3910 3948 5.879777 TGTTCTTGGAATGATCGCAGATAAA 59.120 36.000 0.00 0.00 45.12 1.40
3943 3981 6.354794 TCGGTGAGTTGGGGAAATATATAG 57.645 41.667 0.00 0.00 0.00 1.31
4010 4048 9.403110 CCTTTGCATATATCTGCTTGTATTTTC 57.597 33.333 13.56 0.00 42.75 2.29
4260 4299 1.260538 TGCACCTCCATCTCTCGCTT 61.261 55.000 0.00 0.00 0.00 4.68
4305 4344 7.402640 GTCTCAATCTTAGAACTTTATTGCCG 58.597 38.462 0.00 0.00 0.00 5.69
4329 4368 7.094549 CCGTCACAGTTTTAATCTTTATTGGGA 60.095 37.037 0.00 0.00 0.00 4.37
4356 4395 4.519350 GGAAAACCTTTCAGTAGGGAAGTG 59.481 45.833 1.88 0.00 39.76 3.16
4398 4445 5.877012 GTGAGAAGCACAGAAAGAATATCCA 59.123 40.000 0.00 0.00 46.91 3.41
4732 4807 2.160417 AGCATTCAGAAGCAACGTAAGC 59.840 45.455 4.86 4.86 45.62 3.09
4893 4973 5.419542 GTGTGTCATGGTTTGCTAGATCTA 58.580 41.667 1.69 1.69 0.00 1.98
4894 4974 5.874810 GTGTGTCATGGTTTGCTAGATCTAA 59.125 40.000 3.57 0.00 0.00 2.10
4895 4975 6.540189 GTGTGTCATGGTTTGCTAGATCTAAT 59.460 38.462 3.57 0.00 0.00 1.73
4899 4979 8.461222 TGTCATGGTTTGCTAGATCTAATTTTG 58.539 33.333 3.57 0.00 0.00 2.44
4969 5050 3.327757 TGAACTTATTGGACACCTCTGCT 59.672 43.478 0.00 0.00 0.00 4.24
4996 5077 7.384932 GCTGAAAATGTTTTGCCTACAACTTAT 59.615 33.333 0.00 0.00 34.87 1.73
5135 5216 3.138283 TCTTTGTTTCCTGTCCAGATGGT 59.862 43.478 0.00 0.00 36.34 3.55
5139 5220 3.138283 TGTTTCCTGTCCAGATGGTCTTT 59.862 43.478 0.00 0.00 36.34 2.52
5140 5221 4.349636 TGTTTCCTGTCCAGATGGTCTTTA 59.650 41.667 0.00 0.00 36.34 1.85
5187 5268 3.589988 CATAGTGTTGTCTGGACTGACC 58.410 50.000 6.84 0.00 36.21 4.02
5188 5269 1.794714 AGTGTTGTCTGGACTGACCT 58.205 50.000 6.84 0.00 39.86 3.85
5189 5270 2.958818 AGTGTTGTCTGGACTGACCTA 58.041 47.619 6.84 0.00 39.86 3.08
5195 5276 3.952931 TGTCTGGACTGACCTACTACTC 58.047 50.000 6.84 0.00 39.86 2.59
5224 5305 2.158490 GGTGTGGTTACCTGGGGTTTAA 60.158 50.000 2.07 0.00 37.09 1.52
5297 5378 9.817365 CTATTTGTATATCATTTCTTTCTGCCG 57.183 33.333 0.00 0.00 0.00 5.69
5305 5386 2.024176 TTCTTTCTGCCGAGCCATAC 57.976 50.000 0.00 0.00 0.00 2.39
5307 5388 1.486310 TCTTTCTGCCGAGCCATACAT 59.514 47.619 0.00 0.00 0.00 2.29
5308 5389 2.092968 TCTTTCTGCCGAGCCATACATT 60.093 45.455 0.00 0.00 0.00 2.71
5364 5445 3.848272 ATTTCGGCAATGTTGTAGTGG 57.152 42.857 0.00 0.00 0.00 4.00
5394 5475 2.248280 TCCTGCTCGCTTGTGTTAAA 57.752 45.000 0.00 0.00 0.00 1.52
5400 5481 2.349532 GCTCGCTTGTGTTAAACTGGAC 60.350 50.000 0.00 0.00 0.00 4.02
5454 5535 1.405105 TCTGTTTTGCTGACAGTTGGC 59.595 47.619 3.99 0.00 43.80 4.52
5603 5684 4.209538 GTTTGTTAAACCACAGGTACCCT 58.790 43.478 8.74 0.00 33.12 4.34
5745 5826 2.605580 GCCGACAAGCTTTCTTCTTTGG 60.606 50.000 0.00 0.00 0.00 3.28
6005 6086 5.555966 TGTGCATCCACTCAATACTTTGTA 58.444 37.500 0.00 0.00 42.54 2.41
6006 6087 6.000840 TGTGCATCCACTCAATACTTTGTAA 58.999 36.000 0.00 0.00 42.54 2.41
6009 6090 6.149308 TGCATCCACTCAATACTTTGTAAGTG 59.851 38.462 2.45 0.00 42.84 3.16
6049 6134 3.699038 TGTATGCCTTATTTTGACCTGGC 59.301 43.478 0.00 0.00 40.62 4.85
6052 6137 3.172339 TGCCTTATTTTGACCTGGCATT 58.828 40.909 0.00 0.00 44.35 3.56
6055 6140 5.247110 TGCCTTATTTTGACCTGGCATTTTA 59.753 36.000 0.00 0.00 44.35 1.52
6386 6471 5.914033 TGAAGAGGTATACCAATGTGCTAC 58.086 41.667 23.87 5.90 38.89 3.58
6400 6485 8.421002 ACCAATGTGCTACTTTTGTTAGATTTT 58.579 29.630 0.00 0.00 0.00 1.82
6459 6544 4.393062 TCTTGCTATTGTTTCTACTGCTGC 59.607 41.667 0.00 0.00 0.00 5.25
6463 6548 5.183713 TGCTATTGTTTCTACTGCTGCATTT 59.816 36.000 1.31 0.00 0.00 2.32
6467 6552 9.229784 CTATTGTTTCTACTGCTGCATTTTATG 57.770 33.333 1.31 0.00 0.00 1.90
6483 6568 8.465201 TGCATTTTATGTGCAGACATGTTAATA 58.535 29.630 0.00 0.00 46.76 0.98
6650 6738 8.028540 TGTTCACTGCAATAAACTGTATGTAG 57.971 34.615 0.00 0.00 0.00 2.74
6679 6767 4.448060 GCCGACTATAAAGTATGAACTGCC 59.552 45.833 0.00 0.00 35.56 4.85
6684 6772 6.403878 ACTATAAAGTATGAACTGCCGTGTT 58.596 36.000 0.00 0.00 35.62 3.32
6730 6822 7.825270 ACAACATTATGGTTAGTTTATCCACGA 59.175 33.333 0.00 0.00 33.91 4.35
6732 6824 8.974060 ACATTATGGTTAGTTTATCCACGAAT 57.026 30.769 0.00 0.00 33.91 3.34
6733 6825 8.836413 ACATTATGGTTAGTTTATCCACGAATG 58.164 33.333 13.51 13.51 40.22 2.67
6734 6826 8.836413 CATTATGGTTAGTTTATCCACGAATGT 58.164 33.333 0.00 0.00 35.49 2.71
6750 6842 4.632251 ACGAATGTATTAATGCACCGACAA 59.368 37.500 25.37 0.03 0.00 3.18
6751 6843 5.197549 CGAATGTATTAATGCACCGACAAG 58.802 41.667 18.54 2.19 0.00 3.16
6752 6844 5.220586 CGAATGTATTAATGCACCGACAAGT 60.221 40.000 18.54 0.66 0.00 3.16
6753 6845 6.019398 CGAATGTATTAATGCACCGACAAGTA 60.019 38.462 18.54 0.00 0.00 2.24
6754 6846 6.598753 ATGTATTAATGCACCGACAAGTAC 57.401 37.500 8.50 0.00 0.00 2.73
6755 6847 5.726397 TGTATTAATGCACCGACAAGTACT 58.274 37.500 1.68 0.00 0.00 2.73
6756 6848 5.808540 TGTATTAATGCACCGACAAGTACTC 59.191 40.000 1.68 0.00 0.00 2.59
6757 6849 2.094762 AATGCACCGACAAGTACTCC 57.905 50.000 0.00 0.00 0.00 3.85
6758 6850 0.249398 ATGCACCGACAAGTACTCCC 59.751 55.000 0.00 0.00 0.00 4.30
6759 6851 0.830444 TGCACCGACAAGTACTCCCT 60.830 55.000 0.00 0.00 0.00 4.20
6760 6852 0.108756 GCACCGACAAGTACTCCCTC 60.109 60.000 0.00 0.00 0.00 4.30
6761 6853 0.531200 CACCGACAAGTACTCCCTCC 59.469 60.000 0.00 0.00 0.00 4.30
6762 6854 0.113776 ACCGACAAGTACTCCCTCCA 59.886 55.000 0.00 0.00 0.00 3.86
6763 6855 1.273098 ACCGACAAGTACTCCCTCCAT 60.273 52.381 0.00 0.00 0.00 3.41
6764 6856 1.831736 CCGACAAGTACTCCCTCCATT 59.168 52.381 0.00 0.00 0.00 3.16
6765 6857 2.159085 CCGACAAGTACTCCCTCCATTC 60.159 54.545 0.00 0.00 0.00 2.67
6766 6858 2.159085 CGACAAGTACTCCCTCCATTCC 60.159 54.545 0.00 0.00 0.00 3.01
6767 6859 3.108376 GACAAGTACTCCCTCCATTCCT 58.892 50.000 0.00 0.00 0.00 3.36
6768 6860 4.287552 GACAAGTACTCCCTCCATTCCTA 58.712 47.826 0.00 0.00 0.00 2.94
6769 6861 4.695606 ACAAGTACTCCCTCCATTCCTAA 58.304 43.478 0.00 0.00 0.00 2.69
6770 6862 5.098663 ACAAGTACTCCCTCCATTCCTAAA 58.901 41.667 0.00 0.00 0.00 1.85
6771 6863 5.731678 ACAAGTACTCCCTCCATTCCTAAAT 59.268 40.000 0.00 0.00 0.00 1.40
6772 6864 6.906901 ACAAGTACTCCCTCCATTCCTAAATA 59.093 38.462 0.00 0.00 0.00 1.40
6773 6865 7.572861 ACAAGTACTCCCTCCATTCCTAAATAT 59.427 37.037 0.00 0.00 0.00 1.28
6774 6866 9.101325 CAAGTACTCCCTCCATTCCTAAATATA 57.899 37.037 0.00 0.00 0.00 0.86
6775 6867 9.684702 AAGTACTCCCTCCATTCCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
6776 6868 9.327731 AGTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
6777 6869 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
6778 6870 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
6779 6871 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
6780 6872 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
6781 6873 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
6782 6874 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
6800 6892 9.467796 AAGTCTTTTTAGAGATTCCAATAAGGG 57.532 33.333 0.00 0.00 38.24 3.95
6801 6893 8.836735 AGTCTTTTTAGAGATTCCAATAAGGGA 58.163 33.333 0.00 0.00 38.24 4.20
6802 6894 8.894731 GTCTTTTTAGAGATTCCAATAAGGGAC 58.105 37.037 0.00 0.00 36.46 4.46
6805 6897 9.901172 TTTTTAGAGATTCCAATAAGGGACTAC 57.099 33.333 0.00 0.00 38.49 2.73
6806 6898 8.618240 TTTAGAGATTCCAATAAGGGACTACA 57.382 34.615 0.00 0.00 38.49 2.74
6807 6899 8.798975 TTAGAGATTCCAATAAGGGACTACAT 57.201 34.615 0.00 0.00 38.49 2.29
6808 6900 9.892444 TTAGAGATTCCAATAAGGGACTACATA 57.108 33.333 0.00 0.00 38.49 2.29
6809 6901 8.196378 AGAGATTCCAATAAGGGACTACATAC 57.804 38.462 0.00 0.00 38.49 2.39
6810 6902 6.994221 AGATTCCAATAAGGGACTACATACG 58.006 40.000 0.00 0.00 38.49 3.06
6811 6903 6.781014 AGATTCCAATAAGGGACTACATACGA 59.219 38.462 0.00 0.00 38.49 3.43
6812 6904 6.795144 TTCCAATAAGGGACTACATACGAA 57.205 37.500 0.00 0.00 38.49 3.85
6813 6905 6.401047 TCCAATAAGGGACTACATACGAAG 57.599 41.667 0.00 0.00 38.49 3.79
6814 6906 4.989168 CCAATAAGGGACTACATACGAAGC 59.011 45.833 0.00 0.00 38.49 3.86
6815 6907 5.452776 CCAATAAGGGACTACATACGAAGCA 60.453 44.000 0.00 0.00 38.49 3.91
6816 6908 5.864418 ATAAGGGACTACATACGAAGCAA 57.136 39.130 0.00 0.00 38.49 3.91
6817 6909 4.546829 AAGGGACTACATACGAAGCAAA 57.453 40.909 0.00 0.00 38.49 3.68
6818 6910 4.546829 AGGGACTACATACGAAGCAAAA 57.453 40.909 0.00 0.00 36.02 2.44
6819 6911 5.099042 AGGGACTACATACGAAGCAAAAT 57.901 39.130 0.00 0.00 36.02 1.82
6820 6912 4.876107 AGGGACTACATACGAAGCAAAATG 59.124 41.667 0.00 0.00 36.02 2.32
6821 6913 4.873827 GGGACTACATACGAAGCAAAATGA 59.126 41.667 0.00 0.00 0.00 2.57
6822 6914 5.006746 GGGACTACATACGAAGCAAAATGAG 59.993 44.000 0.00 0.00 0.00 2.90
6823 6915 5.581085 GGACTACATACGAAGCAAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
6824 6916 6.408858 ACTACATACGAAGCAAAATGAGTG 57.591 37.500 0.00 0.00 0.00 3.51
6825 6917 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
6826 6918 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
6827 6919 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
6828 6920 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
6829 6921 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
6830 6922 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
6831 6923 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
6832 6924 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
6833 6925 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
6856 6948 9.692749 ACACTAAAATATGTCTACATACATCCG 57.307 33.333 4.98 0.00 41.15 4.18
6857 6949 9.692749 CACTAAAATATGTCTACATACATCCGT 57.307 33.333 4.98 0.00 41.15 4.69
6875 6967 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
6876 6968 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
6877 6969 9.864034 CATCCGTATGTAGTTTGTATTGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
6878 6970 9.832445 ATCCGTATGTAGTTTGTATTGAAATCT 57.168 29.630 0.00 0.00 0.00 2.40
6879 6971 9.309516 TCCGTATGTAGTTTGTATTGAAATCTC 57.690 33.333 0.00 0.00 0.00 2.75
6880 6972 9.314321 CCGTATGTAGTTTGTATTGAAATCTCT 57.686 33.333 0.00 0.00 0.00 3.10
6991 7085 2.234661 TGATGACGAATCAGCTGAGGTT 59.765 45.455 22.96 12.56 42.02 3.50
7049 7143 8.621286 CAGACGGGTAATTTGCTATCTTAAATT 58.379 33.333 0.00 0.00 39.21 1.82
7062 7156 6.763610 GCTATCTTAAATTGTACTCCAGCACT 59.236 38.462 0.00 0.00 0.00 4.40
7063 7157 7.281100 GCTATCTTAAATTGTACTCCAGCACTT 59.719 37.037 0.00 0.00 0.00 3.16
7064 7158 6.801539 TCTTAAATTGTACTCCAGCACTTG 57.198 37.500 0.00 0.00 0.00 3.16
7065 7159 6.530120 TCTTAAATTGTACTCCAGCACTTGA 58.470 36.000 0.00 0.00 0.00 3.02
7066 7160 7.168219 TCTTAAATTGTACTCCAGCACTTGAT 58.832 34.615 0.00 0.00 0.00 2.57
7067 7161 7.665559 TCTTAAATTGTACTCCAGCACTTGATT 59.334 33.333 0.00 0.00 0.00 2.57
7069 7163 5.886960 ATTGTACTCCAGCACTTGATTTC 57.113 39.130 0.00 0.00 0.00 2.17
7078 7175 4.518211 CCAGCACTTGATTTCTTCTCTTGT 59.482 41.667 0.00 0.00 0.00 3.16
7208 7305 1.257743 CCTCTGTTCCTTCGTCCTCA 58.742 55.000 0.00 0.00 0.00 3.86
7217 7314 0.969894 CTTCGTCCTCACCCAACTCT 59.030 55.000 0.00 0.00 0.00 3.24
7237 7334 1.904990 GAGGAGGCTTCCCCAGACAC 61.905 65.000 11.97 0.00 45.24 3.67
7239 7336 2.121963 AGGCTTCCCCAGACACCA 60.122 61.111 0.00 0.00 35.39 4.17
7297 7394 4.528206 GGATCAAATGGAAACTTTGGGTCT 59.472 41.667 0.00 0.00 34.95 3.85
7307 7404 3.328535 ACTTTGGGTCTTGGAAATGGT 57.671 42.857 0.00 0.00 0.00 3.55
7358 7455 7.306749 GCAGAATGTACCAAACAGACAAATTTG 60.307 37.037 16.67 16.67 42.70 2.32
7397 7494 5.542779 CAACTAGAAAGTGCAGAAGGTACT 58.457 41.667 0.00 0.00 45.03 2.73
7408 7505 0.461961 GAAGGTACTGAGCGGCATCT 59.538 55.000 1.45 0.00 40.86 2.90
7409 7506 0.176680 AAGGTACTGAGCGGCATCTG 59.823 55.000 1.45 3.99 40.86 2.90
7419 7516 1.027357 GCGGCATCTGGATGTTTCAT 58.973 50.000 11.52 0.00 40.80 2.57
7422 7519 3.699067 CGGCATCTGGATGTTTCATTTC 58.301 45.455 11.52 0.00 40.80 2.17
7423 7520 3.129113 CGGCATCTGGATGTTTCATTTCA 59.871 43.478 11.52 0.00 40.80 2.69
7651 7748 1.202268 CGAAGATGTGGAGGTACCGAC 60.202 57.143 6.18 5.56 42.61 4.79
7681 7778 3.610040 TGCAGTCGTGGATACTGAAAT 57.390 42.857 7.39 0.00 45.89 2.17
7830 7927 1.952296 CAAAAGAGTGAAGTGGCAGCT 59.048 47.619 0.00 0.00 0.00 4.24
8008 8105 2.824936 TGGCCAATCACTGTACAAATGG 59.175 45.455 0.61 2.62 0.00 3.16
8032 8129 0.790207 CATTGTCTAACTGCACGCGT 59.210 50.000 5.58 5.58 0.00 6.01
8371 8476 6.265196 TGTTTCAGATCCAGCTTGTTAAACAT 59.735 34.615 0.00 0.00 31.47 2.71
8397 8503 4.657814 TTTCTTGACCAGCTATTCCCTT 57.342 40.909 0.00 0.00 0.00 3.95
8399 8505 5.359194 TTCTTGACCAGCTATTCCCTTAG 57.641 43.478 0.00 0.00 0.00 2.18
8401 8507 4.783227 TCTTGACCAGCTATTCCCTTAGTT 59.217 41.667 0.00 0.00 0.00 2.24
8402 8508 4.487714 TGACCAGCTATTCCCTTAGTTG 57.512 45.455 0.00 0.00 32.14 3.16
8403 8509 3.844211 TGACCAGCTATTCCCTTAGTTGT 59.156 43.478 0.00 0.00 30.84 3.32
8405 8511 4.844884 ACCAGCTATTCCCTTAGTTGTTC 58.155 43.478 0.00 0.00 30.84 3.18
8406 8512 4.536489 ACCAGCTATTCCCTTAGTTGTTCT 59.464 41.667 0.00 0.00 30.84 3.01
8407 8513 4.878397 CCAGCTATTCCCTTAGTTGTTCTG 59.122 45.833 0.00 0.00 30.84 3.02
8408 8514 5.338381 CCAGCTATTCCCTTAGTTGTTCTGA 60.338 44.000 0.00 0.00 30.84 3.27
8409 8515 5.814705 CAGCTATTCCCTTAGTTGTTCTGAG 59.185 44.000 0.00 0.00 0.00 3.35
8410 8516 5.721960 AGCTATTCCCTTAGTTGTTCTGAGA 59.278 40.000 0.00 0.00 32.37 3.27
8411 8517 6.213600 AGCTATTCCCTTAGTTGTTCTGAGAA 59.786 38.462 0.00 0.00 32.37 2.87
8412 8518 6.314152 GCTATTCCCTTAGTTGTTCTGAGAAC 59.686 42.308 18.01 18.01 32.37 3.01
8413 8519 5.888982 TTCCCTTAGTTGTTCTGAGAACT 57.111 39.130 24.09 8.56 41.68 3.01
8414 8520 6.989155 TTCCCTTAGTTGTTCTGAGAACTA 57.011 37.500 24.09 15.39 39.75 2.24
8415 8521 6.342338 TCCCTTAGTTGTTCTGAGAACTAC 57.658 41.667 25.30 25.30 40.22 2.73
8416 8522 5.245526 TCCCTTAGTTGTTCTGAGAACTACC 59.754 44.000 27.65 15.51 40.22 3.18
8417 8523 5.011738 CCCTTAGTTGTTCTGAGAACTACCA 59.988 44.000 27.65 17.17 40.22 3.25
8418 8524 6.463897 CCCTTAGTTGTTCTGAGAACTACCAA 60.464 42.308 27.65 21.87 40.22 3.67
8419 8525 6.990349 CCTTAGTTGTTCTGAGAACTACCAAA 59.010 38.462 27.65 22.03 40.22 3.28
8420 8526 7.171678 CCTTAGTTGTTCTGAGAACTACCAAAG 59.828 40.741 27.65 27.03 40.22 2.77
8421 8527 4.816925 AGTTGTTCTGAGAACTACCAAAGC 59.183 41.667 27.65 10.49 37.59 3.51
8422 8528 4.415881 TGTTCTGAGAACTACCAAAGCA 57.584 40.909 24.09 0.00 0.00 3.91
8423 8529 4.380531 TGTTCTGAGAACTACCAAAGCAG 58.619 43.478 24.09 0.00 0.00 4.24
8424 8530 4.141711 TGTTCTGAGAACTACCAAAGCAGT 60.142 41.667 24.09 0.00 0.00 4.40
8425 8531 4.689612 TCTGAGAACTACCAAAGCAGTT 57.310 40.909 0.00 0.00 37.69 3.16
8522 10841 3.320610 AGGCTAGCTCATGTCCTCTAA 57.679 47.619 15.72 0.00 0.00 2.10
8574 10897 6.872628 CATATTCATGCATGTAAGTGACCT 57.127 37.500 25.43 2.78 0.00 3.85
8576 10899 8.382030 CATATTCATGCATGTAAGTGACCTTA 57.618 34.615 25.43 4.25 31.89 2.69
8660 10983 7.817418 TTAGCTTTGTATTGTTGAGGACTTT 57.183 32.000 0.00 0.00 0.00 2.66
8675 10998 5.066764 TGAGGACTTTGTAAAAAGTTTCGGG 59.933 40.000 12.35 0.00 42.57 5.14
8703 11026 9.639563 TCCAAAGTTGCCATCTCATAATTATTA 57.360 29.630 0.00 0.00 0.00 0.98
8743 11066 2.292292 ACCAAAGTTATCACGTGGCAAC 59.708 45.455 17.00 18.45 36.76 4.17
8750 11073 1.078709 ATCACGTGGCAACTTCGATG 58.921 50.000 17.00 0.00 38.01 3.84
8754 11077 1.078709 CGTGGCAACTTCGATGTCAT 58.921 50.000 4.21 0.00 34.49 3.06
8756 11079 2.725759 CGTGGCAACTTCGATGTCATTG 60.726 50.000 4.21 1.16 34.49 2.82
8759 11082 2.744202 GGCAACTTCGATGTCATTGTCT 59.256 45.455 4.21 0.00 0.00 3.41
8774 11103 2.831685 TGTCTACCATGCGACAACTT 57.168 45.000 7.87 0.00 37.23 2.66
8778 11107 3.684788 GTCTACCATGCGACAACTTCAAT 59.315 43.478 0.00 0.00 0.00 2.57
8779 11108 2.995466 ACCATGCGACAACTTCAATG 57.005 45.000 0.00 0.00 0.00 2.82
8780 11109 1.541147 ACCATGCGACAACTTCAATGG 59.459 47.619 0.00 0.00 41.22 3.16
8781 11110 1.541147 CCATGCGACAACTTCAATGGT 59.459 47.619 0.00 0.00 35.00 3.55
8782 11111 2.587956 CATGCGACAACTTCAATGGTG 58.412 47.619 0.00 0.00 0.00 4.17
8783 11112 1.674359 TGCGACAACTTCAATGGTGT 58.326 45.000 0.00 0.00 0.00 4.16
8784 11113 2.020720 TGCGACAACTTCAATGGTGTT 58.979 42.857 0.00 0.00 0.00 3.32
8785 11114 2.425312 TGCGACAACTTCAATGGTGTTT 59.575 40.909 0.00 0.00 0.00 2.83
8786 11115 3.119316 TGCGACAACTTCAATGGTGTTTT 60.119 39.130 0.00 0.00 0.00 2.43
8787 11116 3.862845 GCGACAACTTCAATGGTGTTTTT 59.137 39.130 0.00 0.00 0.00 1.94
8808 11137 4.603231 TTTTTCCTGTTGACACGTACAC 57.397 40.909 0.00 0.00 0.00 2.90
8809 11138 2.963548 TTCCTGTTGACACGTACACA 57.036 45.000 0.00 0.00 0.00 3.72
8810 11139 3.462483 TTCCTGTTGACACGTACACAT 57.538 42.857 0.00 0.00 0.00 3.21
8811 11140 2.749776 TCCTGTTGACACGTACACATG 58.250 47.619 0.00 0.00 0.00 3.21
8812 11141 2.362717 TCCTGTTGACACGTACACATGA 59.637 45.455 0.00 0.00 0.00 3.07
8813 11142 3.127589 CCTGTTGACACGTACACATGAA 58.872 45.455 0.00 0.00 0.00 2.57
8814 11143 3.558006 CCTGTTGACACGTACACATGAAA 59.442 43.478 0.00 0.00 0.00 2.69
8815 11144 4.213270 CCTGTTGACACGTACACATGAAAT 59.787 41.667 0.00 0.00 0.00 2.17
8816 11145 5.337219 TGTTGACACGTACACATGAAATC 57.663 39.130 0.00 0.00 0.00 2.17
8817 11146 5.053811 TGTTGACACGTACACATGAAATCT 58.946 37.500 0.00 0.00 0.00 2.40
8818 11147 6.217294 TGTTGACACGTACACATGAAATCTA 58.783 36.000 0.00 0.00 0.00 1.98
8819 11148 6.702282 TGTTGACACGTACACATGAAATCTAA 59.298 34.615 0.00 0.00 0.00 2.10
8820 11149 7.386573 TGTTGACACGTACACATGAAATCTAAT 59.613 33.333 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.184864 GGTCATGATCTATCTCCACCTAGTG 59.815 48.000 0.00 0.00 0.00 2.74
6 7 4.042934 TCGGTCATGATCTATCTCCACCTA 59.957 45.833 4.09 0.00 0.00 3.08
11 12 4.439974 GCATCTCGGTCATGATCTATCTCC 60.440 50.000 4.09 0.00 0.00 3.71
47 48 5.012046 ACACACATCACACAGATAAAGGAGA 59.988 40.000 0.00 0.00 34.43 3.71
56 57 2.433970 TGAGGAACACACATCACACAGA 59.566 45.455 0.00 0.00 0.00 3.41
77 78 1.134818 TCTCTCTTTGTGTGTGTGCGT 60.135 47.619 0.00 0.00 0.00 5.24
79 80 2.799412 CTCTCTCTCTTTGTGTGTGTGC 59.201 50.000 0.00 0.00 0.00 4.57
81 82 4.211125 TCTCTCTCTCTCTTTGTGTGTGT 58.789 43.478 0.00 0.00 0.00 3.72
83 84 3.826157 CCTCTCTCTCTCTCTTTGTGTGT 59.174 47.826 0.00 0.00 0.00 3.72
87 88 2.652348 TCCCCTCTCTCTCTCTCTTTGT 59.348 50.000 0.00 0.00 0.00 2.83
89 90 4.625225 ATTCCCCTCTCTCTCTCTCTTT 57.375 45.455 0.00 0.00 0.00 2.52
90 91 4.625225 AATTCCCCTCTCTCTCTCTCTT 57.375 45.455 0.00 0.00 0.00 2.85
92 93 3.818773 CGTAATTCCCCTCTCTCTCTCTC 59.181 52.174 0.00 0.00 0.00 3.20
93 94 3.460340 TCGTAATTCCCCTCTCTCTCTCT 59.540 47.826 0.00 0.00 0.00 3.10
94 95 3.566742 GTCGTAATTCCCCTCTCTCTCTC 59.433 52.174 0.00 0.00 0.00 3.20
95 96 3.053544 TGTCGTAATTCCCCTCTCTCTCT 60.054 47.826 0.00 0.00 0.00 3.10
97 109 3.383698 TGTCGTAATTCCCCTCTCTCT 57.616 47.619 0.00 0.00 0.00 3.10
105 117 5.774630 TCAAATTGGTTTGTCGTAATTCCC 58.225 37.500 0.00 0.00 44.03 3.97
117 129 9.883142 TTTTTGTATGTCTCTTCAAATTGGTTT 57.117 25.926 0.00 0.00 31.45 3.27
124 136 9.677567 GTGCTAATTTTTGTATGTCTCTTCAAA 57.322 29.630 0.00 0.00 0.00 2.69
125 137 9.066892 AGTGCTAATTTTTGTATGTCTCTTCAA 57.933 29.630 0.00 0.00 0.00 2.69
154 166 3.308053 CACCTGATAATGAGAGCACAACG 59.692 47.826 0.00 0.00 0.00 4.10
178 190 2.286365 AGAAAATGTCGGGGAAGCAA 57.714 45.000 0.00 0.00 0.00 3.91
187 199 6.568869 AGAGAGGAGTCATTAGAAAATGTCG 58.431 40.000 0.00 0.00 42.66 4.35
195 207 4.878971 CGTCTCAAGAGAGGAGTCATTAGA 59.121 45.833 13.04 0.00 43.80 2.10
212 227 3.755628 GCCCCTACGCACGTCTCA 61.756 66.667 0.00 0.00 0.00 3.27
238 253 1.679305 ATCTGTCGTCACCCTCGCT 60.679 57.895 0.00 0.00 0.00 4.93
246 261 1.044611 TCCACCAACATCTGTCGTCA 58.955 50.000 0.00 0.00 0.00 4.35
255 270 2.432444 CAATACACGGTCCACCAACAT 58.568 47.619 0.00 0.00 35.14 2.71
268 283 3.365832 CTTGCATGAATCGCCAATACAC 58.634 45.455 0.00 0.00 0.00 2.90
284 299 1.291184 CGAGTTGGTCATCGCTTGCA 61.291 55.000 0.00 0.00 31.42 4.08
321 336 2.042843 AGGACCTCCTAGCACCGG 60.043 66.667 0.00 0.00 46.48 5.28
351 366 1.517832 GCACCATGGTCGCTAGAGT 59.482 57.895 23.79 0.00 0.00 3.24
407 424 1.984570 CCTCCGCCTCTGTGAAGGA 60.985 63.158 0.00 0.00 38.87 3.36
410 427 2.650116 GCTCCTCCGCCTCTGTGAA 61.650 63.158 0.00 0.00 0.00 3.18
412 429 2.849120 CTTGCTCCTCCGCCTCTGTG 62.849 65.000 0.00 0.00 0.00 3.66
413 430 2.604686 TTGCTCCTCCGCCTCTGT 60.605 61.111 0.00 0.00 0.00 3.41
414 431 1.892819 TTCTTGCTCCTCCGCCTCTG 61.893 60.000 0.00 0.00 0.00 3.35
415 432 1.194781 TTTCTTGCTCCTCCGCCTCT 61.195 55.000 0.00 0.00 0.00 3.69
419 436 1.668237 GATCTTTTCTTGCTCCTCCGC 59.332 52.381 0.00 0.00 0.00 5.54
428 445 2.813754 TCTTGTGGGCGATCTTTTCTTG 59.186 45.455 0.00 0.00 0.00 3.02
429 446 3.077359 CTCTTGTGGGCGATCTTTTCTT 58.923 45.455 0.00 0.00 0.00 2.52
431 448 1.740025 CCTCTTGTGGGCGATCTTTTC 59.260 52.381 0.00 0.00 0.00 2.29
438 455 1.125093 TTCTTCCCTCTTGTGGGCGA 61.125 55.000 3.05 0.47 46.67 5.54
444 461 6.183360 CCTCATTTTTGTTTCTTCCCTCTTGT 60.183 38.462 0.00 0.00 0.00 3.16
463 480 2.283529 ACACGCTCCGACCCTCATT 61.284 57.895 0.00 0.00 0.00 2.57
464 481 2.680352 ACACGCTCCGACCCTCAT 60.680 61.111 0.00 0.00 0.00 2.90
485 502 1.192146 TTGACTCCCCTTCTCCACCG 61.192 60.000 0.00 0.00 0.00 4.94
487 504 1.978580 TCTTTGACTCCCCTTCTCCAC 59.021 52.381 0.00 0.00 0.00 4.02
500 517 3.452474 CTCCATCGTCTCCATCTTTGAC 58.548 50.000 0.00 0.00 0.00 3.18
505 522 1.459455 CCGCTCCATCGTCTCCATCT 61.459 60.000 0.00 0.00 0.00 2.90
556 576 1.337823 ACCCACGATTTGAACTCCTCG 60.338 52.381 0.00 0.00 37.17 4.63
565 585 2.482336 TGACGATTTCACCCACGATTTG 59.518 45.455 0.00 0.00 0.00 2.32
599 623 4.447138 AGTGGTAATGGTTCAACCTTCA 57.553 40.909 8.40 0.00 39.58 3.02
622 646 7.608153 TGGACTCGTTTCAAAACTGATCTATA 58.392 34.615 4.28 0.00 36.77 1.31
624 648 5.849510 TGGACTCGTTTCAAAACTGATCTA 58.150 37.500 4.28 0.00 36.77 1.98
1096 1123 2.108157 GCACATATGGACGGGCGA 59.892 61.111 7.80 0.00 0.00 5.54
1099 1126 2.246739 CGCAGCACATATGGACGGG 61.247 63.158 7.80 0.00 0.00 5.28
1106 1133 1.820906 CAGCCACCGCAGCACATAT 60.821 57.895 0.00 0.00 37.52 1.78
1234 1261 2.238942 AATCACACAACTCGCAGTCA 57.761 45.000 0.00 0.00 0.00 3.41
1296 1323 2.609299 TCCATCCCTGCAACCCGA 60.609 61.111 0.00 0.00 0.00 5.14
1368 1395 2.743636 ACACAACGATCCGAGTCATT 57.256 45.000 0.00 0.00 0.00 2.57
1389 1416 4.500265 GCCATATGCATCCCCGTT 57.500 55.556 0.19 0.00 40.77 4.44
1435 1462 8.146412 TCAAATAGTATCACACATCAGATCAGG 58.854 37.037 0.00 0.00 0.00 3.86
1462 1489 9.935241 ATATGAATCTTCAGTTTACGATGCTAT 57.065 29.630 0.00 0.00 41.08 2.97
1470 1497 8.616076 CCCAACTCATATGAATCTTCAGTTTAC 58.384 37.037 6.90 0.00 41.08 2.01
1523 1550 0.664761 CTGTTCCAGCCACAACACAG 59.335 55.000 0.00 0.00 0.00 3.66
1524 1551 0.034574 ACTGTTCCAGCCACAACACA 60.035 50.000 0.00 0.00 34.37 3.72
1525 1552 0.381801 CACTGTTCCAGCCACAACAC 59.618 55.000 0.00 0.00 34.37 3.32
1526 1553 0.034574 ACACTGTTCCAGCCACAACA 60.035 50.000 0.00 0.00 34.37 3.33
1527 1554 0.381801 CACACTGTTCCAGCCACAAC 59.618 55.000 0.00 0.00 34.37 3.32
1528 1555 1.383456 GCACACTGTTCCAGCCACAA 61.383 55.000 0.00 0.00 34.37 3.33
1529 1556 1.823470 GCACACTGTTCCAGCCACA 60.823 57.895 0.00 0.00 34.37 4.17
1530 1557 2.555547 GGCACACTGTTCCAGCCAC 61.556 63.158 3.85 0.00 44.59 5.01
1531 1558 2.203337 GGCACACTGTTCCAGCCA 60.203 61.111 3.85 0.00 44.59 4.75
1583 1612 2.753452 TCAGTAGAGGCCAAGTAACTCG 59.247 50.000 5.01 0.00 36.40 4.18
1645 1674 7.931275 ACGAATAGAATTGGAATTAGAAAGGC 58.069 34.615 0.00 0.00 0.00 4.35
1664 1693 7.240674 GCAACTGAACACAATATCAACGAATA 58.759 34.615 0.00 0.00 0.00 1.75
1759 1789 2.714793 TGAGATGGAATGATGGAGCCAT 59.285 45.455 0.71 0.71 43.46 4.40
2057 2088 4.377841 CCTCAAGCTAAAAACAGAAGCTCG 60.378 45.833 0.00 0.00 45.61 5.03
2069 2100 4.069304 ACGCATGTAAACCTCAAGCTAAA 58.931 39.130 0.00 0.00 0.00 1.85
2134 2165 6.936900 TCTTTGTTACTCTACTAGTACACGGT 59.063 38.462 0.00 0.00 40.48 4.83
2136 2167 8.715998 TCTTCTTTGTTACTCTACTAGTACACG 58.284 37.037 0.00 0.00 40.48 4.49
2191 2222 3.201290 TGCGTTTCCTTTACAACGGTTA 58.799 40.909 6.57 0.00 44.77 2.85
2210 2241 6.657836 TTCCTTAACTTAATAAGCGACTGC 57.342 37.500 0.00 0.00 43.24 4.40
2257 2288 6.922389 GTGCAAAAACAATTGTACTTGTCTC 58.078 36.000 23.30 16.10 41.09 3.36
2392 2423 9.344772 TCCTTGCTTGTAAACAAAAGAACTATA 57.655 29.630 8.26 0.00 35.15 1.31
2409 2440 6.373774 ACTCAGAAAATAGTGATCCTTGCTTG 59.626 38.462 0.00 0.00 0.00 4.01
2441 2472 7.829706 GGAATAGAAACAGTTTACCCTCAAGAT 59.170 37.037 0.00 0.00 0.00 2.40
2450 2481 7.229907 TGGAAAGTGGGAATAGAAACAGTTTAC 59.770 37.037 0.00 0.00 36.81 2.01
2452 2483 6.133356 TGGAAAGTGGGAATAGAAACAGTTT 58.867 36.000 0.00 0.00 38.70 2.66
2469 2500 7.032598 TCTATTTGGAGAGGAAATGGAAAGT 57.967 36.000 0.00 0.00 30.10 2.66
2476 2507 5.659849 AGGCATCTATTTGGAGAGGAAAT 57.340 39.130 0.00 0.00 28.45 2.17
2667 2704 4.458989 TGGATGCCATAACAGTCAAGAAAC 59.541 41.667 0.00 0.00 0.00 2.78
2680 2717 2.575735 TGAAGGAACACTGGATGCCATA 59.424 45.455 0.00 0.00 30.82 2.74
2681 2718 1.355381 TGAAGGAACACTGGATGCCAT 59.645 47.619 0.00 0.00 30.82 4.40
2700 2737 7.581213 TGGGAAATACCAATAGCATAAGTTG 57.419 36.000 0.00 0.00 41.20 3.16
2708 2745 3.229697 AGGCTGGGAAATACCAATAGC 57.770 47.619 0.00 0.00 40.68 2.97
2715 2752 6.003950 TCAAGCATTATAGGCTGGGAAATAC 58.996 40.000 0.00 0.00 41.66 1.89
2868 2905 6.388619 ACTCAACCCTTGACATATAAAGGT 57.611 37.500 9.15 0.00 41.25 3.50
2872 2909 7.027874 AGGAAACTCAACCCTTGACATATAA 57.972 36.000 0.00 0.00 32.90 0.98
2875 2912 4.993705 AGGAAACTCAACCCTTGACATA 57.006 40.909 0.00 0.00 32.90 2.29
2993 3030 7.489239 AGCTTTTACTCTAACCTCTTCATCT 57.511 36.000 0.00 0.00 0.00 2.90
3211 3248 6.958255 TCTACAACGAATTTATGCCATGATG 58.042 36.000 0.00 0.00 0.00 3.07
3251 3288 5.922544 CAGATTAACAAAAGGCAAGACCAAG 59.077 40.000 0.00 0.00 43.14 3.61
3285 3322 8.565896 AATATGACAGCAACTACAAGATGAAA 57.434 30.769 0.00 0.00 0.00 2.69
3447 3484 3.706600 ACCCCATAGTTTAAGTGCGAA 57.293 42.857 0.00 0.00 0.00 4.70
3448 3485 6.042322 ACATATACCCCATAGTTTAAGTGCGA 59.958 38.462 0.00 0.00 0.00 5.10
3523 3561 6.258160 CAGCGCAAAATACTGTATTAGCTTT 58.742 36.000 23.56 14.73 31.24 3.51
3531 3569 2.027561 AGACCCAGCGCAAAATACTGTA 60.028 45.455 11.47 0.00 0.00 2.74
3532 3570 1.165270 GACCCAGCGCAAAATACTGT 58.835 50.000 11.47 0.00 0.00 3.55
3533 3571 1.453155 AGACCCAGCGCAAAATACTG 58.547 50.000 11.47 0.00 0.00 2.74
3534 3572 2.906354 CTAGACCCAGCGCAAAATACT 58.094 47.619 11.47 4.18 0.00 2.12
3535 3573 1.330829 GCTAGACCCAGCGCAAAATAC 59.669 52.381 11.47 0.00 0.00 1.89
3561 3599 2.973224 CCACAGAAGAAAATTGTTCGCG 59.027 45.455 0.00 0.00 35.78 5.87
3598 3636 9.630098 TTGAAATATTCAAGAATCAAGCTTGTC 57.370 29.630 25.19 16.53 44.21 3.18
3616 3654 9.241919 TGAGTGTGTTGTAATCCATTGAAATAT 57.758 29.630 0.00 0.00 0.00 1.28
3683 3721 2.240414 AGATGTGATGCCAATCAGGTCA 59.760 45.455 0.00 0.00 43.52 4.02
3761 3799 0.602638 TCAACCAACTGTAGCAGCCG 60.603 55.000 0.00 0.00 34.37 5.52
3786 3824 1.684248 CCTGAAGAATTCCAGGGGCAG 60.684 57.143 18.30 9.94 46.93 4.85
3943 3981 6.340522 ACAAATAAATGCATTTCCCTAGTGC 58.659 36.000 27.28 0.00 39.26 4.40
4010 4048 7.325660 AGGTTTGTATGCAATTATGTCTCAG 57.674 36.000 0.00 0.00 34.18 3.35
4091 4130 9.700831 AAACTGAATATTGTTATTTAGGAGGCT 57.299 29.630 0.00 0.00 36.31 4.58
4260 4299 4.225942 AGACCTTGGACTGCATATCTTTGA 59.774 41.667 0.00 0.00 0.00 2.69
4305 4344 9.626045 CTTCCCAATAAAGATTAAAACTGTGAC 57.374 33.333 0.00 0.00 0.00 3.67
4329 4368 3.181422 CCCTACTGAAAGGTTTTCCCCTT 60.181 47.826 0.00 0.00 46.92 3.95
4381 4428 4.906065 TGCATGGATATTCTTTCTGTGC 57.094 40.909 0.00 0.00 0.00 4.57
4398 4445 9.247861 ACAAGTAAAGGATTAGAAGAAATGCAT 57.752 29.630 0.00 0.00 30.24 3.96
4476 4551 9.780186 GTAACCATCTATGTAAAGCCTCTTAAT 57.220 33.333 0.00 0.00 0.00 1.40
4478 4553 8.313944 TGTAACCATCTATGTAAAGCCTCTTA 57.686 34.615 0.00 0.00 0.00 2.10
4732 4807 1.000739 AGTGACCAATGCCCCATGG 59.999 57.895 4.14 4.14 0.00 3.66
4948 5029 3.686726 CAGCAGAGGTGTCCAATAAGTTC 59.313 47.826 0.00 0.00 0.00 3.01
4969 5050 4.662468 TGTAGGCAAAACATTTTCAGCA 57.338 36.364 0.00 0.00 0.00 4.41
4996 5077 0.035820 GAGGTGGGCGTAAACATCCA 60.036 55.000 0.00 0.00 0.00 3.41
5023 5104 1.476891 TCCAGTACCTTCAGTCGATGC 59.523 52.381 0.00 0.00 0.00 3.91
5187 5268 9.148104 GTAACCACACCAAAATTAGAGTAGTAG 57.852 37.037 0.00 0.00 0.00 2.57
5188 5269 8.096414 GGTAACCACACCAAAATTAGAGTAGTA 58.904 37.037 0.00 0.00 38.55 1.82
5189 5270 6.938596 GGTAACCACACCAAAATTAGAGTAGT 59.061 38.462 0.00 0.00 38.55 2.73
5195 5276 4.219725 CCCAGGTAACCACACCAAAATTAG 59.780 45.833 0.00 0.00 41.40 1.73
5224 5305 1.135112 TGCATGCATCTCGTCTACGTT 60.135 47.619 18.46 0.00 40.80 3.99
5294 5375 2.427232 TACGTAATGTATGGCTCGGC 57.573 50.000 0.00 0.00 0.00 5.54
5297 5378 7.941795 AACACTAATACGTAATGTATGGCTC 57.058 36.000 0.00 0.00 43.04 4.70
5328 5409 4.201910 GCCGAAATTTAAGAGCATGCAGTA 60.202 41.667 21.98 5.66 0.00 2.74
5364 5445 1.202188 GCGAGCAGGAAATTACCAAGC 60.202 52.381 0.00 0.00 34.86 4.01
5412 5493 6.875726 CAGAGATGAACTCCACAATCTGTAAA 59.124 38.462 0.00 0.00 45.96 2.01
5413 5494 6.014242 ACAGAGATGAACTCCACAATCTGTAA 60.014 38.462 0.00 0.00 45.96 2.41
5543 5624 6.308766 CCTTTAAACGATGATGAAGCAAAAGG 59.691 38.462 0.00 0.00 34.95 3.11
5603 5684 8.147058 ACATGATGGTGCAAAAAGTTGTTATAA 58.853 29.630 0.00 0.00 37.06 0.98
5745 5826 5.193679 ACTTACCCCATTAGATTCTGTTGC 58.806 41.667 0.00 0.00 0.00 4.17
5800 5881 3.857157 TGGGGCATTCTTGGTAGTATC 57.143 47.619 0.00 0.00 0.00 2.24
6038 6123 6.586344 TCAAACATAAAATGCCAGGTCAAAA 58.414 32.000 0.00 0.00 0.00 2.44
6049 6134 9.010029 ACTGTTACCCTACTCAAACATAAAATG 57.990 33.333 0.00 0.00 31.88 2.32
6052 6137 7.737869 TCACTGTTACCCTACTCAAACATAAA 58.262 34.615 0.00 0.00 31.88 1.40
6055 6140 5.307196 ACTCACTGTTACCCTACTCAAACAT 59.693 40.000 0.00 0.00 31.88 2.71
6374 6459 7.524717 AATCTAACAAAAGTAGCACATTGGT 57.475 32.000 0.00 0.00 0.00 3.67
6386 6471 9.274065 GTAGCGAACCATAAAATCTAACAAAAG 57.726 33.333 0.00 0.00 0.00 2.27
6400 6485 9.990360 TGAATATTTTGATAGTAGCGAACCATA 57.010 29.630 0.00 0.00 0.00 2.74
6467 6552 5.901884 GCGTGTATTATTAACATGTCTGCAC 59.098 40.000 0.00 0.00 36.45 4.57
6483 6568 5.049198 CCTGCATTAATGATCAGCGTGTATT 60.049 40.000 19.73 0.00 0.00 1.89
6629 6717 9.891828 TTTTTCTACATACAGTTTATTGCAGTG 57.108 29.630 0.00 0.00 0.00 3.66
6643 6731 9.310716 ACTTTATAGTCGGCTTTTTCTACATAC 57.689 33.333 0.00 0.00 0.00 2.39
6650 6738 8.880750 AGTTCATACTTTATAGTCGGCTTTTTC 58.119 33.333 0.00 0.00 35.78 2.29
6679 6767 6.692232 TCCAAACAAACTTAAAACAACACG 57.308 33.333 0.00 0.00 0.00 4.49
6728 6820 4.787381 TGTCGGTGCATTAATACATTCG 57.213 40.909 0.00 7.60 0.00 3.34
6730 6822 6.821665 AGTACTTGTCGGTGCATTAATACATT 59.178 34.615 0.00 0.00 0.00 2.71
6732 6824 5.726397 AGTACTTGTCGGTGCATTAATACA 58.274 37.500 0.00 0.00 0.00 2.29
6733 6825 5.233689 GGAGTACTTGTCGGTGCATTAATAC 59.766 44.000 0.00 0.00 0.00 1.89
6734 6826 5.353938 GGAGTACTTGTCGGTGCATTAATA 58.646 41.667 0.00 0.00 0.00 0.98
6735 6827 4.189231 GGAGTACTTGTCGGTGCATTAAT 58.811 43.478 0.00 0.00 0.00 1.40
6736 6828 3.592059 GGAGTACTTGTCGGTGCATTAA 58.408 45.455 0.00 0.00 0.00 1.40
6750 6842 9.327731 CTTATATTTAGGAATGGAGGGAGTACT 57.672 37.037 0.00 0.00 0.00 2.73
6751 6843 9.102453 ACTTATATTTAGGAATGGAGGGAGTAC 57.898 37.037 0.00 0.00 0.00 2.73
6752 6844 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
6753 6845 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
6754 6846 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
6755 6847 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
6756 6848 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
6774 6866 9.467796 CCCTTATTGGAATCTCTAAAAAGACTT 57.532 33.333 0.00 0.00 38.35 3.01
6775 6867 8.836735 TCCCTTATTGGAATCTCTAAAAAGACT 58.163 33.333 0.00 0.00 38.35 3.24
6776 6868 8.894731 GTCCCTTATTGGAATCTCTAAAAAGAC 58.105 37.037 0.00 0.00 35.80 3.01
6777 6869 8.836735 AGTCCCTTATTGGAATCTCTAAAAAGA 58.163 33.333 0.00 0.00 35.80 2.52
6779 6871 9.901172 GTAGTCCCTTATTGGAATCTCTAAAAA 57.099 33.333 0.00 0.00 35.80 1.94
6780 6872 9.053472 TGTAGTCCCTTATTGGAATCTCTAAAA 57.947 33.333 0.00 0.00 35.80 1.52
6781 6873 8.618240 TGTAGTCCCTTATTGGAATCTCTAAA 57.382 34.615 0.00 0.00 35.80 1.85
6782 6874 8.798975 ATGTAGTCCCTTATTGGAATCTCTAA 57.201 34.615 0.00 0.00 35.80 2.10
6783 6875 9.310449 GTATGTAGTCCCTTATTGGAATCTCTA 57.690 37.037 0.00 0.00 35.80 2.43
6784 6876 7.039644 CGTATGTAGTCCCTTATTGGAATCTCT 60.040 40.741 0.00 0.00 35.80 3.10
6785 6877 7.039923 TCGTATGTAGTCCCTTATTGGAATCTC 60.040 40.741 0.00 0.00 35.80 2.75
6786 6878 6.781014 TCGTATGTAGTCCCTTATTGGAATCT 59.219 38.462 0.00 0.00 35.80 2.40
6787 6879 6.989659 TCGTATGTAGTCCCTTATTGGAATC 58.010 40.000 0.00 0.00 35.80 2.52
6788 6880 6.989155 TCGTATGTAGTCCCTTATTGGAAT 57.011 37.500 0.00 0.00 35.80 3.01
6789 6881 6.684613 GCTTCGTATGTAGTCCCTTATTGGAA 60.685 42.308 0.00 0.00 35.80 3.53
6790 6882 5.221382 GCTTCGTATGTAGTCCCTTATTGGA 60.221 44.000 0.00 0.00 38.35 3.53
6791 6883 4.989168 GCTTCGTATGTAGTCCCTTATTGG 59.011 45.833 0.00 0.00 0.00 3.16
6792 6884 5.597806 TGCTTCGTATGTAGTCCCTTATTG 58.402 41.667 0.00 0.00 0.00 1.90
6793 6885 5.864418 TGCTTCGTATGTAGTCCCTTATT 57.136 39.130 0.00 0.00 0.00 1.40
6794 6886 5.864418 TTGCTTCGTATGTAGTCCCTTAT 57.136 39.130 0.00 0.00 0.00 1.73
6795 6887 5.664294 TTTGCTTCGTATGTAGTCCCTTA 57.336 39.130 0.00 0.00 0.00 2.69
6796 6888 4.546829 TTTGCTTCGTATGTAGTCCCTT 57.453 40.909 0.00 0.00 0.00 3.95
6797 6889 4.546829 TTTTGCTTCGTATGTAGTCCCT 57.453 40.909 0.00 0.00 0.00 4.20
6798 6890 4.873827 TCATTTTGCTTCGTATGTAGTCCC 59.126 41.667 0.00 0.00 0.00 4.46
6799 6891 5.581085 ACTCATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
6800 6892 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
6801 6893 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
6802 6894 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
6803 6895 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
6804 6896 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
6805 6897 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
6806 6898 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
6807 6899 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
6808 6900 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
6809 6901 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
6810 6902 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
6811 6903 8.621532 TTAGTGTAGATTCACTCATTTTGCTT 57.378 30.769 2.59 0.00 45.79 3.91
6812 6904 8.621532 TTTAGTGTAGATTCACTCATTTTGCT 57.378 30.769 2.59 0.00 45.79 3.91
6813 6905 9.846248 ATTTTAGTGTAGATTCACTCATTTTGC 57.154 29.630 2.59 0.00 45.79 3.68
6830 6922 9.692749 CGGATGTATGTAGACATATTTTAGTGT 57.307 33.333 5.69 0.00 40.18 3.55
6831 6923 9.692749 ACGGATGTATGTAGACATATTTTAGTG 57.307 33.333 5.69 0.00 40.18 2.74
6849 6941 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
6851 6943 9.864034 GATTTCAATACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
6852 6944 9.832445 AGATTTCAATACAAACTACATACGGAT 57.168 29.630 0.00 0.00 0.00 4.18
6853 6945 9.309516 GAGATTTCAATACAAACTACATACGGA 57.690 33.333 0.00 0.00 0.00 4.69
6854 6946 9.314321 AGAGATTTCAATACAAACTACATACGG 57.686 33.333 0.00 0.00 0.00 4.02
6885 6977 9.453830 ACTCCCTCCATTTCTAAATATAAGTCT 57.546 33.333 0.00 0.00 0.00 3.24
6896 6988 9.847224 GAAAACAATATACTCCCTCCATTTCTA 57.153 33.333 0.00 0.00 0.00 2.10
6897 6989 8.560903 AGAAAACAATATACTCCCTCCATTTCT 58.439 33.333 0.00 0.00 0.00 2.52
6898 6990 8.753497 AGAAAACAATATACTCCCTCCATTTC 57.247 34.615 0.00 0.00 0.00 2.17
6899 6991 9.547279 AAAGAAAACAATATACTCCCTCCATTT 57.453 29.630 0.00 0.00 0.00 2.32
6900 6992 9.547279 AAAAGAAAACAATATACTCCCTCCATT 57.453 29.630 0.00 0.00 0.00 3.16
6901 6993 8.971073 CAAAAGAAAACAATATACTCCCTCCAT 58.029 33.333 0.00 0.00 0.00 3.41
6902 6994 8.167392 TCAAAAGAAAACAATATACTCCCTCCA 58.833 33.333 0.00 0.00 0.00 3.86
6903 6995 8.575649 TCAAAAGAAAACAATATACTCCCTCC 57.424 34.615 0.00 0.00 0.00 4.30
6904 6996 9.232473 ACTCAAAAGAAAACAATATACTCCCTC 57.768 33.333 0.00 0.00 0.00 4.30
6991 7085 3.069586 CCAGACGCAGGGAAGATATTACA 59.930 47.826 0.00 0.00 0.00 2.41
7024 7118 8.621286 CAATTTAAGATAGCAAATTACCCGTCT 58.379 33.333 0.00 0.00 33.66 4.18
7049 7143 4.623932 AGAAATCAAGTGCTGGAGTACA 57.376 40.909 0.00 0.00 32.87 2.90
7062 7156 6.688073 ACCTCCTACAAGAGAAGAAATCAA 57.312 37.500 0.00 0.00 35.82 2.57
7063 7157 7.455008 AGTTACCTCCTACAAGAGAAGAAATCA 59.545 37.037 0.00 0.00 35.82 2.57
7064 7158 7.842982 AGTTACCTCCTACAAGAGAAGAAATC 58.157 38.462 0.00 0.00 35.82 2.17
7065 7159 7.455008 TGAGTTACCTCCTACAAGAGAAGAAAT 59.545 37.037 0.00 0.00 36.86 2.17
7066 7160 6.781014 TGAGTTACCTCCTACAAGAGAAGAAA 59.219 38.462 0.00 0.00 36.86 2.52
7067 7161 6.312529 TGAGTTACCTCCTACAAGAGAAGAA 58.687 40.000 0.00 0.00 36.86 2.52
7069 7163 6.783708 ATGAGTTACCTCCTACAAGAGAAG 57.216 41.667 0.00 0.00 36.86 2.85
7078 7175 4.227300 ACATTGCCAATGAGTTACCTCCTA 59.773 41.667 23.56 0.00 41.46 2.94
7090 7187 7.649370 TTAAACACACAATACATTGCCAATG 57.351 32.000 15.71 15.71 44.48 2.82
7104 7201 4.020543 AGGGAACTGCTTTTAAACACACA 58.979 39.130 0.00 0.00 41.13 3.72
7105 7202 4.338400 AGAGGGAACTGCTTTTAAACACAC 59.662 41.667 0.00 0.00 44.43 3.82
7208 7305 0.474660 AAGCCTCCTCAGAGTTGGGT 60.475 55.000 5.17 5.17 38.58 4.51
7237 7334 2.022195 CACCATCATCAGCTTCCTTGG 58.978 52.381 0.00 0.00 0.00 3.61
7239 7336 3.618351 CTTCACCATCATCAGCTTCCTT 58.382 45.455 0.00 0.00 0.00 3.36
7322 7419 2.286294 GGTACATTCTGCAGCATCTTCG 59.714 50.000 9.47 0.00 0.00 3.79
7358 7455 2.697654 AGTTGCTCATTCTCAGTGCTC 58.302 47.619 0.00 0.00 0.00 4.26
7397 7494 0.035152 AAACATCCAGATGCCGCTCA 60.035 50.000 7.56 0.00 42.39 4.26
7419 7516 4.253685 GTGCTAGCTTCAGTACCATGAAA 58.746 43.478 17.23 0.00 38.66 2.69
7422 7519 3.118992 TCTGTGCTAGCTTCAGTACCATG 60.119 47.826 26.77 11.27 30.84 3.66
7423 7520 3.099905 TCTGTGCTAGCTTCAGTACCAT 58.900 45.455 26.77 0.00 30.84 3.55
7479 7576 0.891373 GCCTGTGTCTCAGTAGCTGA 59.109 55.000 0.00 0.00 42.19 4.26
7667 7764 6.480524 TCAGTTTTCATTTCAGTATCCACG 57.519 37.500 0.00 0.00 0.00 4.94
7681 7778 4.594123 TCCACGACTGTATCAGTTTTCA 57.406 40.909 3.91 0.00 45.44 2.69
7830 7927 5.114764 TGCCATTTCAGTCCATGAGATAA 57.885 39.130 0.00 0.00 39.68 1.75
8008 8105 1.200020 GTGCAGTTAGACAATGGTGCC 59.800 52.381 0.00 0.00 0.00 5.01
8032 8129 8.408043 AATTGACCAATTTCTGATGAAGTGTA 57.592 30.769 2.38 0.00 37.74 2.90
8333 8438 7.495901 TGGATCTGAAACAATTTAAAGCAACA 58.504 30.769 0.00 0.00 0.00 3.33
8371 8476 5.003804 GGAATAGCTGGTCAAGAAAAGACA 58.996 41.667 0.00 0.00 37.74 3.41
8397 8503 5.989777 GCTTTGGTAGTTCTCAGAACAACTA 59.010 40.000 19.89 0.25 34.60 2.24
8399 8505 4.574828 TGCTTTGGTAGTTCTCAGAACAAC 59.425 41.667 19.89 8.90 0.00 3.32
8401 8507 4.141711 ACTGCTTTGGTAGTTCTCAGAACA 60.142 41.667 19.89 3.11 34.85 3.18
8402 8508 4.381411 ACTGCTTTGGTAGTTCTCAGAAC 58.619 43.478 9.78 9.78 34.85 3.01
8403 8509 4.689612 ACTGCTTTGGTAGTTCTCAGAA 57.310 40.909 0.00 0.00 34.85 3.02
8405 8511 4.555511 GCAAACTGCTTTGGTAGTTCTCAG 60.556 45.833 1.15 0.00 45.16 3.35
8406 8512 3.315191 GCAAACTGCTTTGGTAGTTCTCA 59.685 43.478 1.15 0.00 45.16 3.27
8407 8513 3.315191 TGCAAACTGCTTTGGTAGTTCTC 59.685 43.478 0.00 0.00 45.16 2.87
8408 8514 3.287222 TGCAAACTGCTTTGGTAGTTCT 58.713 40.909 0.00 0.00 45.16 3.01
8409 8515 3.708563 TGCAAACTGCTTTGGTAGTTC 57.291 42.857 0.00 0.00 45.16 3.01
8411 8517 4.464069 TTTTGCAAACTGCTTTGGTAGT 57.536 36.364 12.39 0.00 45.31 2.73
8412 8518 5.989551 AATTTTGCAAACTGCTTTGGTAG 57.010 34.783 12.39 0.00 45.31 3.18
8413 8519 7.044798 ACTAAATTTTGCAAACTGCTTTGGTA 58.955 30.769 12.39 0.00 45.31 3.25
8414 8520 5.879777 ACTAAATTTTGCAAACTGCTTTGGT 59.120 32.000 12.39 13.39 45.31 3.67
8415 8521 6.362210 ACTAAATTTTGCAAACTGCTTTGG 57.638 33.333 12.39 12.83 45.31 3.28
8416 8522 7.462731 TCAACTAAATTTTGCAAACTGCTTTG 58.537 30.769 12.39 11.03 45.31 2.77
8417 8523 7.608308 TCAACTAAATTTTGCAAACTGCTTT 57.392 28.000 12.39 11.44 45.31 3.51
8418 8524 7.334171 AGTTCAACTAAATTTTGCAAACTGCTT 59.666 29.630 12.39 5.52 45.31 3.91
8419 8525 6.818142 AGTTCAACTAAATTTTGCAAACTGCT 59.182 30.769 12.39 0.63 45.31 4.24
8420 8526 7.003939 AGTTCAACTAAATTTTGCAAACTGC 57.996 32.000 12.39 0.00 45.29 4.40
8421 8527 8.755018 CCTAGTTCAACTAAATTTTGCAAACTG 58.245 33.333 12.39 3.21 29.00 3.16
8422 8528 8.474831 ACCTAGTTCAACTAAATTTTGCAAACT 58.525 29.630 12.39 3.28 29.00 2.66
8423 8529 8.539674 CACCTAGTTCAACTAAATTTTGCAAAC 58.460 33.333 12.39 0.00 29.00 2.93
8424 8530 7.708752 CCACCTAGTTCAACTAAATTTTGCAAA 59.291 33.333 8.05 8.05 29.00 3.68
8425 8531 7.068839 TCCACCTAGTTCAACTAAATTTTGCAA 59.931 33.333 0.00 0.00 29.00 4.08
8483 10802 9.447157 GCTAGCCTTATCATGAAATTAAGATCT 57.553 33.333 13.75 12.14 0.00 2.75
8500 10819 3.320610 AGAGGACATGAGCTAGCCTTA 57.679 47.619 12.13 0.00 0.00 2.69
8502 10821 2.962421 GTTAGAGGACATGAGCTAGCCT 59.038 50.000 12.13 0.00 0.00 4.58
8522 10841 2.560542 ACTCTGATTGAGCTTCTCACGT 59.439 45.455 0.00 0.00 46.41 4.49
8597 10920 7.681939 AAAGTCGACCAAGCAATTTAATCTA 57.318 32.000 13.01 0.00 0.00 1.98
8607 10930 5.508200 AAATGTTTAAAGTCGACCAAGCA 57.492 34.783 13.01 12.36 0.00 3.91
8660 10983 2.933573 TGGAGCCCGAAACTTTTTACA 58.066 42.857 0.00 0.00 0.00 2.41
8675 10998 1.538047 TGAGATGGCAACTTTGGAGC 58.462 50.000 0.00 0.00 37.61 4.70
8703 11026 5.906113 TGGTACAACACAATGACAACTTT 57.094 34.783 0.00 0.00 31.92 2.66
8743 11066 4.025396 GCATGGTAGACAATGACATCGAAG 60.025 45.833 0.96 0.00 0.00 3.79
8750 11073 2.616960 TGTCGCATGGTAGACAATGAC 58.383 47.619 0.96 0.00 43.47 3.06
8756 11079 2.683968 TGAAGTTGTCGCATGGTAGAC 58.316 47.619 0.00 0.00 37.85 2.59
8759 11082 2.746904 CCATTGAAGTTGTCGCATGGTA 59.253 45.455 0.00 0.00 35.94 3.25
8787 11116 4.001652 TGTGTACGTGTCAACAGGAAAAA 58.998 39.130 9.61 0.00 35.83 1.94
8788 11117 3.597255 TGTGTACGTGTCAACAGGAAAA 58.403 40.909 9.61 0.00 35.83 2.29
8789 11118 3.248495 TGTGTACGTGTCAACAGGAAA 57.752 42.857 9.61 0.00 35.83 3.13
8790 11119 2.963548 TGTGTACGTGTCAACAGGAA 57.036 45.000 9.61 0.00 35.83 3.36
8791 11120 2.362717 TCATGTGTACGTGTCAACAGGA 59.637 45.455 9.61 1.60 35.83 3.86
8792 11121 2.749776 TCATGTGTACGTGTCAACAGG 58.250 47.619 0.00 0.00 37.71 4.00
8793 11122 4.787381 TTTCATGTGTACGTGTCAACAG 57.213 40.909 0.00 0.00 34.59 3.16
8794 11123 5.053811 AGATTTCATGTGTACGTGTCAACA 58.946 37.500 0.00 0.00 34.59 3.33
8795 11124 5.591643 AGATTTCATGTGTACGTGTCAAC 57.408 39.130 0.00 0.00 34.59 3.18
8796 11125 7.899178 ATTAGATTTCATGTGTACGTGTCAA 57.101 32.000 0.00 0.52 34.59 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.