Multiple sequence alignment - TraesCS3A01G209400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G209400 chr3A 100.000 4106 0 0 1 4106 372456809 372460914 0.000000e+00 7583.0
1 TraesCS3A01G209400 chr3A 95.455 198 8 1 3909 4106 121237112 121237308 8.570000e-82 315.0
2 TraesCS3A01G209400 chr3B 92.042 3531 113 52 1 3464 378210474 378207045 0.000000e+00 4809.0
3 TraesCS3A01G209400 chr3B 94.798 346 17 1 3467 3812 378207006 378206662 4.670000e-149 538.0
4 TraesCS3A01G209400 chr3D 95.862 2513 79 12 835 3338 285005499 285007995 0.000000e+00 4041.0
5 TraesCS3A01G209400 chr3D 87.241 870 33 19 1 823 285004701 285005539 0.000000e+00 920.0
6 TraesCS3A01G209400 chr3D 95.335 343 15 1 3470 3812 285014116 285014457 1.000000e-150 544.0
7 TraesCS3A01G209400 chr3D 98.540 137 2 0 3328 3464 285009525 285009661 4.100000e-60 243.0
8 TraesCS3A01G209400 chr5A 85.135 74 9 2 3934 4005 607384320 607384393 1.580000e-09 75.0
9 TraesCS3A01G209400 chr5A 100.000 34 0 0 3937 3970 695743043 695743010 3.430000e-06 63.9
10 TraesCS3A01G209400 chr7B 97.368 38 1 0 3938 3975 726838030 726838067 9.530000e-07 65.8
11 TraesCS3A01G209400 chr1A 97.143 35 1 0 2429 2463 439066823 439066857 4.430000e-05 60.2
12 TraesCS3A01G209400 chr1A 100.000 31 0 0 3938 3968 47811808 47811778 1.590000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G209400 chr3A 372456809 372460914 4105 False 7583.000000 7583 100.000 1 4106 1 chr3A.!!$F2 4105
1 TraesCS3A01G209400 chr3B 378206662 378210474 3812 True 2673.500000 4809 93.420 1 3812 2 chr3B.!!$R1 3811
2 TraesCS3A01G209400 chr3D 285004701 285009661 4960 False 1734.666667 4041 93.881 1 3464 3 chr3D.!!$F2 3463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 871 0.253044 AGGCCAGCAGATTAGCGAAA 59.747 50.000 5.01 0.00 40.15 3.46 F
901 960 0.320771 AGCTCCACACACGAACCATC 60.321 55.000 0.00 0.00 0.00 3.51 F
916 975 1.137614 CATCTTGCTGCTGCTGCTG 59.862 57.895 27.67 20.66 40.48 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 1819 0.257328 AGCGAGAGTCTCCATCTCCA 59.743 55.0 14.61 0.0 40.11 3.86 R
2868 2936 0.395173 AGTTGTCCGCCTTGGTGTTT 60.395 50.0 0.00 0.0 39.52 2.83 R
3122 3190 0.670546 ATGCAACACCTCGGAAGTCG 60.671 55.0 0.00 0.0 40.90 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.821260 AGGCTAAATTTGCTTGGGTTTTTG 59.179 37.500 0.00 0.00 0.00 2.44
37 38 4.578516 GGCTAAATTTGCTTGGGTTTTTGT 59.421 37.500 0.00 0.00 0.00 2.83
39 40 6.405286 GGCTAAATTTGCTTGGGTTTTTGTTT 60.405 34.615 0.00 0.00 0.00 2.83
41 42 7.219917 GCTAAATTTGCTTGGGTTTTTGTTTTC 59.780 33.333 0.00 0.00 0.00 2.29
42 43 6.832520 AATTTGCTTGGGTTTTTGTTTTCT 57.167 29.167 0.00 0.00 0.00 2.52
44 45 4.278975 TGCTTGGGTTTTTGTTTTCTGT 57.721 36.364 0.00 0.00 0.00 3.41
45 46 4.646572 TGCTTGGGTTTTTGTTTTCTGTT 58.353 34.783 0.00 0.00 0.00 3.16
46 47 4.453819 TGCTTGGGTTTTTGTTTTCTGTTG 59.546 37.500 0.00 0.00 0.00 3.33
47 48 4.142708 GCTTGGGTTTTTGTTTTCTGTTGG 60.143 41.667 0.00 0.00 0.00 3.77
48 49 3.339141 TGGGTTTTTGTTTTCTGTTGGC 58.661 40.909 0.00 0.00 0.00 4.52
51 53 3.621268 GGTTTTTGTTTTCTGTTGGCCTC 59.379 43.478 3.32 0.00 0.00 4.70
74 82 2.036089 ACTTTGAGGGTGAGACGAGAAC 59.964 50.000 0.00 0.00 0.00 3.01
78 86 2.223971 TGAGGGTGAGACGAGAACAAAC 60.224 50.000 0.00 0.00 0.00 2.93
293 326 5.600908 TTAAACAAGTCCATGTCGTAAGC 57.399 39.130 0.00 0.00 31.81 3.09
312 350 3.201290 AGCCGAAAGAGCTGACAATATG 58.799 45.455 0.00 0.00 39.69 1.78
318 356 1.506493 GAGCTGACAATATGCTCCGG 58.494 55.000 0.00 0.00 45.12 5.14
330 368 3.217743 CTCCGGCGGTAGAGACCC 61.218 72.222 27.32 0.00 43.64 4.46
373 418 7.921214 TGAGATCCATCGATTTTCTAGTTGTAC 59.079 37.037 0.00 0.00 0.00 2.90
374 419 7.782049 AGATCCATCGATTTTCTAGTTGTACA 58.218 34.615 0.00 0.00 0.00 2.90
375 420 8.424918 AGATCCATCGATTTTCTAGTTGTACAT 58.575 33.333 0.00 0.00 0.00 2.29
376 421 8.964476 ATCCATCGATTTTCTAGTTGTACATT 57.036 30.769 0.00 0.00 0.00 2.71
377 422 8.420374 TCCATCGATTTTCTAGTTGTACATTC 57.580 34.615 0.00 0.00 0.00 2.67
378 423 7.494625 TCCATCGATTTTCTAGTTGTACATTCC 59.505 37.037 0.00 0.00 0.00 3.01
379 424 7.279981 CCATCGATTTTCTAGTTGTACATTCCA 59.720 37.037 0.00 0.00 0.00 3.53
383 428 7.413000 CGATTTTCTAGTTGTACATTCCACCAG 60.413 40.741 0.00 0.00 0.00 4.00
384 429 5.818678 TTCTAGTTGTACATTCCACCAGT 57.181 39.130 0.00 0.00 0.00 4.00
416 461 8.767944 GTTTGGCACAGACTAATAATTAATCG 57.232 34.615 0.00 0.00 40.57 3.34
438 483 3.895232 ACACTGGGATGCAACTACTAG 57.105 47.619 0.00 0.00 0.00 2.57
439 484 3.173965 ACACTGGGATGCAACTACTAGT 58.826 45.455 0.00 0.00 0.00 2.57
440 485 4.350245 ACACTGGGATGCAACTACTAGTA 58.650 43.478 1.89 1.89 0.00 1.82
441 486 4.159879 ACACTGGGATGCAACTACTAGTAC 59.840 45.833 0.00 0.00 0.00 2.73
442 487 4.402793 CACTGGGATGCAACTACTAGTACT 59.597 45.833 0.00 0.00 0.00 2.73
443 488 5.593095 CACTGGGATGCAACTACTAGTACTA 59.407 44.000 1.89 1.89 0.00 1.82
505 551 1.131618 CGCACCGAATTTTAAGCGCC 61.132 55.000 2.29 0.00 38.68 6.53
507 553 1.399089 GCACCGAATTTTAAGCGCCTA 59.601 47.619 2.29 0.00 0.00 3.93
508 554 2.790123 GCACCGAATTTTAAGCGCCTAC 60.790 50.000 2.29 0.00 0.00 3.18
509 555 2.417239 CACCGAATTTTAAGCGCCTACA 59.583 45.455 2.29 0.00 0.00 2.74
520 566 2.906354 AGCGCCTACAAATTCCTACTG 58.094 47.619 2.29 0.00 0.00 2.74
529 578 5.678955 ACAAATTCCTACTGGTACTCCTC 57.321 43.478 0.00 0.00 34.23 3.71
532 581 5.745988 AATTCCTACTGGTACTCCTCCTA 57.254 43.478 0.00 0.00 34.23 2.94
533 582 4.516652 TTCCTACTGGTACTCCTCCTAC 57.483 50.000 0.00 0.00 34.23 3.18
534 583 3.745489 TCCTACTGGTACTCCTCCTACT 58.255 50.000 0.00 0.00 34.23 2.57
535 584 3.458857 TCCTACTGGTACTCCTCCTACTG 59.541 52.174 0.00 0.00 34.23 2.74
536 585 2.830651 ACTGGTACTCCTCCTACTGG 57.169 55.000 0.00 0.00 34.23 4.00
537 586 1.342175 ACTGGTACTCCTCCTACTGGC 60.342 57.143 0.00 0.00 34.23 4.85
538 587 1.008403 TGGTACTCCTCCTACTGGCT 58.992 55.000 0.00 0.00 34.23 4.75
539 588 2.175069 CTGGTACTCCTCCTACTGGCTA 59.825 54.545 0.00 0.00 34.23 3.93
540 589 2.091994 TGGTACTCCTCCTACTGGCTAC 60.092 54.545 0.00 0.00 34.23 3.58
541 590 2.585330 GTACTCCTCCTACTGGCTACC 58.415 57.143 0.00 0.00 0.00 3.18
542 591 1.008403 ACTCCTCCTACTGGCTACCA 58.992 55.000 0.00 0.00 0.00 3.25
620 675 6.225703 ACGCATTACACTAGTATAGACTCG 57.774 41.667 0.00 0.00 42.77 4.18
737 794 0.490017 TACCACTCCCCTCACCTCAA 59.510 55.000 0.00 0.00 0.00 3.02
777 834 6.315393 CGTATATAACCAGCCAACAAGAAAGT 59.685 38.462 0.00 0.00 0.00 2.66
792 849 2.094957 AGAAAGTAGACGCAGACAGAGC 60.095 50.000 0.00 0.00 0.00 4.09
812 871 0.253044 AGGCCAGCAGATTAGCGAAA 59.747 50.000 5.01 0.00 40.15 3.46
813 872 1.133976 AGGCCAGCAGATTAGCGAAAT 60.134 47.619 5.01 0.00 40.15 2.17
814 873 2.104792 AGGCCAGCAGATTAGCGAAATA 59.895 45.455 5.01 0.00 40.15 1.40
815 874 2.481952 GGCCAGCAGATTAGCGAAATAG 59.518 50.000 0.00 0.00 40.15 1.73
816 875 3.393800 GCCAGCAGATTAGCGAAATAGA 58.606 45.455 0.00 0.00 40.15 1.98
817 876 3.431572 GCCAGCAGATTAGCGAAATAGAG 59.568 47.826 0.00 0.00 40.15 2.43
818 877 4.797604 GCCAGCAGATTAGCGAAATAGAGA 60.798 45.833 0.00 0.00 40.15 3.10
819 878 4.922692 CCAGCAGATTAGCGAAATAGAGAG 59.077 45.833 0.00 0.00 40.15 3.20
820 879 5.278709 CCAGCAGATTAGCGAAATAGAGAGA 60.279 44.000 0.00 0.00 40.15 3.10
821 880 5.858049 CAGCAGATTAGCGAAATAGAGAGAG 59.142 44.000 0.00 0.00 40.15 3.20
822 881 5.767665 AGCAGATTAGCGAAATAGAGAGAGA 59.232 40.000 0.00 0.00 40.15 3.10
823 882 6.072508 AGCAGATTAGCGAAATAGAGAGAGAG 60.073 42.308 0.00 0.00 40.15 3.20
824 883 6.072728 GCAGATTAGCGAAATAGAGAGAGAGA 60.073 42.308 0.00 0.00 0.00 3.10
825 884 7.521529 CAGATTAGCGAAATAGAGAGAGAGAG 58.478 42.308 0.00 0.00 0.00 3.20
826 885 7.387673 CAGATTAGCGAAATAGAGAGAGAGAGA 59.612 40.741 0.00 0.00 0.00 3.10
827 886 7.604164 AGATTAGCGAAATAGAGAGAGAGAGAG 59.396 40.741 0.00 0.00 0.00 3.20
828 887 5.290493 AGCGAAATAGAGAGAGAGAGAGA 57.710 43.478 0.00 0.00 0.00 3.10
829 888 5.300752 AGCGAAATAGAGAGAGAGAGAGAG 58.699 45.833 0.00 0.00 0.00 3.20
830 889 5.070446 AGCGAAATAGAGAGAGAGAGAGAGA 59.930 44.000 0.00 0.00 0.00 3.10
831 890 5.406780 GCGAAATAGAGAGAGAGAGAGAGAG 59.593 48.000 0.00 0.00 0.00 3.20
832 891 6.738731 GCGAAATAGAGAGAGAGAGAGAGAGA 60.739 46.154 0.00 0.00 0.00 3.10
833 892 6.865726 CGAAATAGAGAGAGAGAGAGAGAGAG 59.134 46.154 0.00 0.00 0.00 3.20
834 893 7.255625 CGAAATAGAGAGAGAGAGAGAGAGAGA 60.256 44.444 0.00 0.00 0.00 3.10
835 894 7.537596 AATAGAGAGAGAGAGAGAGAGAGAG 57.462 44.000 0.00 0.00 0.00 3.20
836 895 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
837 896 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
838 897 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
839 898 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
840 899 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
841 900 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
901 960 0.320771 AGCTCCACACACGAACCATC 60.321 55.000 0.00 0.00 0.00 3.51
915 974 2.046864 CCATCTTGCTGCTGCTGCT 61.047 57.895 27.67 8.85 40.48 4.24
916 975 1.137614 CATCTTGCTGCTGCTGCTG 59.862 57.895 27.67 20.66 40.48 4.41
1476 1541 3.438017 CTCCTACCCAGAGCTGCGC 62.438 68.421 0.00 0.00 0.00 6.09
1760 1825 1.826024 GGACGCATCCTGTGGAGAT 59.174 57.895 0.00 0.00 42.45 2.75
1914 1979 1.144936 GAGGCTTCCCGAGATGGTG 59.855 63.158 0.00 0.00 35.15 4.17
2128 2193 6.210584 GGAGAAGGAGATTATAGTGGAAGAGG 59.789 46.154 0.00 0.00 0.00 3.69
2430 2498 1.613928 TACCAATCCTCCACGCCCA 60.614 57.895 0.00 0.00 0.00 5.36
2475 2543 1.819632 GCCGCCGTCATCCATCTTT 60.820 57.895 0.00 0.00 0.00 2.52
2580 2648 2.038269 GCGCCGATCAAGGAAACCA 61.038 57.895 0.00 0.00 0.00 3.67
3117 3185 5.493735 GTCGGCTTCTAAATTCGAATTCTG 58.506 41.667 22.93 17.51 0.00 3.02
3122 3190 5.968261 GCTTCTAAATTCGAATTCTGCTTCC 59.032 40.000 22.93 6.67 0.00 3.46
3146 3214 0.107643 TCCGAGGTGTTGCATTGACA 59.892 50.000 0.00 0.00 0.00 3.58
3153 3221 2.287788 GGTGTTGCATTGACACTTGGAG 60.288 50.000 17.29 0.00 45.13 3.86
3158 3226 4.572985 TGCATTGACACTTGGAGAAAAG 57.427 40.909 0.00 0.00 0.00 2.27
3169 3237 7.112779 ACACTTGGAGAAAAGAGAGAGAAAAA 58.887 34.615 0.00 0.00 0.00 1.94
3234 3304 4.722361 TTTCGGGTATTGGGTTATTTGC 57.278 40.909 0.00 0.00 0.00 3.68
3268 3338 6.643770 CCATGAGATTTGGTTCACTTTTCTTG 59.356 38.462 0.00 0.00 0.00 3.02
3271 3341 6.149129 AGATTTGGTTCACTTTTCTTGTCC 57.851 37.500 0.00 0.00 0.00 4.02
3432 5042 1.424493 GAAAGCTCGGCGAGGTGATG 61.424 60.000 38.03 14.62 39.62 3.07
3489 5135 8.452534 ACTGTATAGTCGTAGAAAGTGAAAGAG 58.547 37.037 0.00 0.00 39.69 2.85
3497 5143 6.982141 TCGTAGAAAGTGAAAGAGCTTTACAA 59.018 34.615 0.00 0.00 35.35 2.41
3550 5196 5.220586 CGTGCAATAATACTACACCTTGTGG 60.221 44.000 0.00 0.00 37.94 4.17
3576 5222 3.248602 GTGATCGTGGATGATTTGCCTAC 59.751 47.826 0.00 0.00 0.00 3.18
3600 5246 4.665142 GCTGATATACCACGTACGTACTCG 60.665 50.000 22.34 13.46 43.34 4.18
3635 5281 2.224257 TGTAGTGTTGCATGAGCTGTCA 60.224 45.455 0.00 0.00 42.74 3.58
3638 5284 1.605710 GTGTTGCATGAGCTGTCAAGT 59.394 47.619 0.00 0.00 42.74 3.16
3640 5286 2.291465 TGTTGCATGAGCTGTCAAGTTC 59.709 45.455 0.00 0.00 42.74 3.01
3645 5291 3.499048 CATGAGCTGTCAAGTTCAATGC 58.501 45.455 0.00 0.00 45.40 3.56
3649 5295 4.098349 TGAGCTGTCAAGTTCAATGCTTTT 59.902 37.500 0.00 0.00 40.30 2.27
3650 5296 4.365723 AGCTGTCAAGTTCAATGCTTTTG 58.634 39.130 0.00 0.00 0.00 2.44
3711 5357 1.202867 TGATTGTGCCCAGTTGTGCTA 60.203 47.619 0.00 0.00 0.00 3.49
3730 5376 3.821033 GCTAATCATATTTTGGGCCTCGT 59.179 43.478 4.53 0.00 0.00 4.18
3763 5409 2.833338 CCATCCATCCACACAACCAAAT 59.167 45.455 0.00 0.00 0.00 2.32
3765 5411 1.617850 TCCATCCACACAACCAAATGC 59.382 47.619 0.00 0.00 0.00 3.56
3802 5448 8.482128 ACCAACCTCAAATCAAAATAGAAAACA 58.518 29.630 0.00 0.00 0.00 2.83
3813 5459 8.659925 TCAAAATAGAAAACACATGCAAATGT 57.340 26.923 0.00 0.00 34.64 2.71
3814 5460 9.107177 TCAAAATAGAAAACACATGCAAATGTT 57.893 25.926 11.98 11.98 40.76 2.71
3816 5462 9.719279 AAAATAGAAAACACATGCAAATGTTTG 57.281 25.926 24.36 6.79 45.86 2.93
3817 5463 5.738118 AGAAAACACATGCAAATGTTTGG 57.262 34.783 24.36 4.16 45.86 3.28
3818 5464 4.575645 AGAAAACACATGCAAATGTTTGGG 59.424 37.500 24.36 7.79 45.86 4.12
3819 5465 3.834489 AACACATGCAAATGTTTGGGA 57.166 38.095 11.98 0.00 35.51 4.37
3820 5466 3.389925 ACACATGCAAATGTTTGGGAG 57.610 42.857 7.51 0.00 38.57 4.30
3821 5467 2.964464 ACACATGCAAATGTTTGGGAGA 59.036 40.909 7.51 0.00 38.57 3.71
3822 5468 3.006110 ACACATGCAAATGTTTGGGAGAG 59.994 43.478 7.51 0.00 38.57 3.20
3823 5469 2.564062 ACATGCAAATGTTTGGGAGAGG 59.436 45.455 7.51 0.00 38.57 3.69
3824 5470 2.673775 TGCAAATGTTTGGGAGAGGA 57.326 45.000 7.51 0.00 38.57 3.71
3825 5471 3.173953 TGCAAATGTTTGGGAGAGGAT 57.826 42.857 7.51 0.00 38.57 3.24
3826 5472 3.509442 TGCAAATGTTTGGGAGAGGATT 58.491 40.909 7.51 0.00 38.57 3.01
3827 5473 3.511146 TGCAAATGTTTGGGAGAGGATTC 59.489 43.478 7.51 0.00 38.57 2.52
3828 5474 3.118992 GCAAATGTTTGGGAGAGGATTCC 60.119 47.826 7.51 0.00 38.57 3.01
3829 5475 4.347607 CAAATGTTTGGGAGAGGATTCCT 58.652 43.478 4.44 4.44 37.40 3.36
3830 5476 4.400567 CAAATGTTTGGGAGAGGATTCCTC 59.599 45.833 22.94 22.94 41.23 3.71
3841 5487 3.546724 GAGGATTCCTCCCTTTTACAGC 58.453 50.000 20.35 0.00 44.36 4.40
3842 5488 2.242452 AGGATTCCTCCCTTTTACAGCC 59.758 50.000 0.00 0.00 43.21 4.85
3843 5489 2.025321 GGATTCCTCCCTTTTACAGCCA 60.025 50.000 0.00 0.00 35.28 4.75
3844 5490 2.879103 TTCCTCCCTTTTACAGCCAG 57.121 50.000 0.00 0.00 0.00 4.85
3845 5491 0.991920 TCCTCCCTTTTACAGCCAGG 59.008 55.000 0.00 0.00 0.00 4.45
3846 5492 0.991920 CCTCCCTTTTACAGCCAGGA 59.008 55.000 0.00 0.00 0.00 3.86
3847 5493 1.354368 CCTCCCTTTTACAGCCAGGAA 59.646 52.381 0.00 0.00 0.00 3.36
3848 5494 2.225017 CCTCCCTTTTACAGCCAGGAAA 60.225 50.000 0.00 0.00 0.00 3.13
3849 5495 3.496331 CTCCCTTTTACAGCCAGGAAAA 58.504 45.455 0.00 0.00 0.00 2.29
3850 5496 3.227614 TCCCTTTTACAGCCAGGAAAAC 58.772 45.455 0.00 0.00 0.00 2.43
3851 5497 2.962421 CCCTTTTACAGCCAGGAAAACA 59.038 45.455 0.00 0.00 0.00 2.83
3852 5498 3.005791 CCCTTTTACAGCCAGGAAAACAG 59.994 47.826 0.00 0.00 0.00 3.16
3853 5499 3.636764 CCTTTTACAGCCAGGAAAACAGT 59.363 43.478 0.00 0.00 0.00 3.55
3854 5500 4.099419 CCTTTTACAGCCAGGAAAACAGTT 59.901 41.667 0.00 0.00 0.00 3.16
3855 5501 5.395214 CCTTTTACAGCCAGGAAAACAGTTT 60.395 40.000 0.00 0.00 0.00 2.66
3856 5502 5.669164 TTTACAGCCAGGAAAACAGTTTT 57.331 34.783 11.22 11.22 35.12 2.43
3857 5503 6.777213 TTTACAGCCAGGAAAACAGTTTTA 57.223 33.333 11.38 0.00 31.94 1.52
3858 5504 6.969993 TTACAGCCAGGAAAACAGTTTTAT 57.030 33.333 11.38 0.98 31.94 1.40
3859 5505 8.466617 TTTACAGCCAGGAAAACAGTTTTATA 57.533 30.769 11.38 0.00 31.94 0.98
3860 5506 8.644374 TTACAGCCAGGAAAACAGTTTTATAT 57.356 30.769 11.38 0.00 31.94 0.86
3861 5507 7.539034 ACAGCCAGGAAAACAGTTTTATATT 57.461 32.000 11.38 0.00 31.94 1.28
3862 5508 7.602753 ACAGCCAGGAAAACAGTTTTATATTC 58.397 34.615 11.38 0.00 31.94 1.75
3863 5509 7.035612 CAGCCAGGAAAACAGTTTTATATTCC 58.964 38.462 11.38 8.25 37.24 3.01
3864 5510 6.723977 AGCCAGGAAAACAGTTTTATATTCCA 59.276 34.615 11.38 0.00 38.99 3.53
3865 5511 7.234577 AGCCAGGAAAACAGTTTTATATTCCAA 59.765 33.333 11.38 0.00 38.99 3.53
3866 5512 7.545615 GCCAGGAAAACAGTTTTATATTCCAAG 59.454 37.037 11.38 5.26 38.99 3.61
3867 5513 8.585018 CCAGGAAAACAGTTTTATATTCCAAGT 58.415 33.333 11.38 0.00 38.99 3.16
3868 5514 9.981114 CAGGAAAACAGTTTTATATTCCAAGTT 57.019 29.630 11.38 0.00 38.99 2.66
3879 5525 8.716619 TTTATATTCCAAGTTTTGTTTCGACG 57.283 30.769 0.00 0.00 0.00 5.12
3880 5526 4.886247 ATTCCAAGTTTTGTTTCGACGA 57.114 36.364 0.00 0.00 0.00 4.20
3881 5527 4.886247 TTCCAAGTTTTGTTTCGACGAT 57.114 36.364 0.00 0.00 0.00 3.73
3882 5528 4.461992 TCCAAGTTTTGTTTCGACGATC 57.538 40.909 0.00 0.00 0.00 3.69
3883 5529 3.249080 TCCAAGTTTTGTTTCGACGATCC 59.751 43.478 0.00 0.00 0.00 3.36
3884 5530 3.215244 CAAGTTTTGTTTCGACGATCCG 58.785 45.455 0.00 0.00 0.00 4.18
3885 5531 1.796459 AGTTTTGTTTCGACGATCCGG 59.204 47.619 0.00 0.00 0.00 5.14
3886 5532 1.528161 GTTTTGTTTCGACGATCCGGT 59.472 47.619 0.00 0.00 0.00 5.28
3887 5533 1.141645 TTTGTTTCGACGATCCGGTG 58.858 50.000 0.00 0.00 0.00 4.94
3888 5534 0.314618 TTGTTTCGACGATCCGGTGA 59.685 50.000 0.00 0.00 0.00 4.02
3889 5535 0.314618 TGTTTCGACGATCCGGTGAA 59.685 50.000 0.00 0.00 0.00 3.18
3890 5536 0.989890 GTTTCGACGATCCGGTGAAG 59.010 55.000 0.00 0.00 0.00 3.02
3891 5537 0.734942 TTTCGACGATCCGGTGAAGC 60.735 55.000 0.00 0.00 0.00 3.86
3892 5538 1.868987 TTCGACGATCCGGTGAAGCA 61.869 55.000 0.00 0.00 0.00 3.91
3893 5539 1.874019 CGACGATCCGGTGAAGCAG 60.874 63.158 0.00 0.00 0.00 4.24
3894 5540 1.511305 GACGATCCGGTGAAGCAGA 59.489 57.895 0.00 0.00 0.00 4.26
3895 5541 0.526524 GACGATCCGGTGAAGCAGAG 60.527 60.000 0.00 0.00 0.00 3.35
3896 5542 1.251527 ACGATCCGGTGAAGCAGAGT 61.252 55.000 0.00 0.00 0.00 3.24
3897 5543 0.526524 CGATCCGGTGAAGCAGAGTC 60.527 60.000 0.00 0.00 0.00 3.36
3898 5544 0.820871 GATCCGGTGAAGCAGAGTCT 59.179 55.000 0.00 0.00 0.00 3.24
3899 5545 0.820871 ATCCGGTGAAGCAGAGTCTC 59.179 55.000 0.00 0.00 0.00 3.36
3900 5546 0.539669 TCCGGTGAAGCAGAGTCTCA 60.540 55.000 0.00 0.00 0.00 3.27
3901 5547 0.389166 CCGGTGAAGCAGAGTCTCAC 60.389 60.000 1.94 0.00 0.00 3.51
3902 5548 0.730834 CGGTGAAGCAGAGTCTCACG 60.731 60.000 1.94 0.00 32.62 4.35
3903 5549 1.011451 GGTGAAGCAGAGTCTCACGC 61.011 60.000 1.94 4.42 32.62 5.34
3904 5550 1.011451 GTGAAGCAGAGTCTCACGCC 61.011 60.000 9.90 0.00 0.00 5.68
3905 5551 1.181741 TGAAGCAGAGTCTCACGCCT 61.182 55.000 9.90 0.00 0.00 5.52
3906 5552 0.457681 GAAGCAGAGTCTCACGCCTC 60.458 60.000 9.90 4.42 0.00 4.70
3907 5553 1.882989 AAGCAGAGTCTCACGCCTCC 61.883 60.000 9.90 0.00 0.00 4.30
3908 5554 2.888863 CAGAGTCTCACGCCTCCC 59.111 66.667 1.94 0.00 0.00 4.30
3909 5555 1.979155 CAGAGTCTCACGCCTCCCA 60.979 63.158 1.94 0.00 0.00 4.37
3910 5556 1.979693 AGAGTCTCACGCCTCCCAC 60.980 63.158 1.94 0.00 0.00 4.61
3911 5557 3.343788 GAGTCTCACGCCTCCCACG 62.344 68.421 0.00 0.00 0.00 4.94
3916 5562 4.514577 CACGCCTCCCACGCCTAG 62.515 72.222 0.00 0.00 0.00 3.02
4013 5659 3.161450 GGCGGCCACTCTCCCATA 61.161 66.667 15.62 0.00 0.00 2.74
4014 5660 2.423446 GCGGCCACTCTCCCATAG 59.577 66.667 2.24 0.00 0.00 2.23
4015 5661 2.435693 GCGGCCACTCTCCCATAGT 61.436 63.158 2.24 0.00 0.00 2.12
4016 5662 1.742768 CGGCCACTCTCCCATAGTC 59.257 63.158 2.24 0.00 0.00 2.59
4017 5663 1.043116 CGGCCACTCTCCCATAGTCA 61.043 60.000 2.24 0.00 0.00 3.41
4018 5664 1.428869 GGCCACTCTCCCATAGTCAT 58.571 55.000 0.00 0.00 0.00 3.06
4019 5665 1.071385 GGCCACTCTCCCATAGTCATG 59.929 57.143 0.00 0.00 0.00 3.07
4020 5666 1.542108 GCCACTCTCCCATAGTCATGC 60.542 57.143 0.00 0.00 0.00 4.06
4021 5667 1.764723 CCACTCTCCCATAGTCATGCA 59.235 52.381 0.00 0.00 0.00 3.96
4022 5668 2.484417 CCACTCTCCCATAGTCATGCAC 60.484 54.545 0.00 0.00 0.00 4.57
4023 5669 2.433604 CACTCTCCCATAGTCATGCACT 59.566 50.000 0.00 0.00 39.41 4.40
4024 5670 2.697751 ACTCTCCCATAGTCATGCACTC 59.302 50.000 0.00 0.00 36.43 3.51
4025 5671 2.964464 CTCTCCCATAGTCATGCACTCT 59.036 50.000 0.00 0.00 36.43 3.24
4026 5672 2.961741 TCTCCCATAGTCATGCACTCTC 59.038 50.000 0.00 0.00 36.43 3.20
4027 5673 2.036992 CTCCCATAGTCATGCACTCTCC 59.963 54.545 0.00 0.00 36.43 3.71
4028 5674 1.764723 CCCATAGTCATGCACTCTCCA 59.235 52.381 0.00 0.00 36.43 3.86
4029 5675 2.371179 CCCATAGTCATGCACTCTCCAT 59.629 50.000 0.00 0.00 36.43 3.41
4030 5676 3.556633 CCCATAGTCATGCACTCTCCATC 60.557 52.174 0.00 0.00 36.43 3.51
4031 5677 3.324268 CCATAGTCATGCACTCTCCATCT 59.676 47.826 0.00 0.00 36.43 2.90
4032 5678 4.525874 CCATAGTCATGCACTCTCCATCTA 59.474 45.833 0.00 0.00 36.43 1.98
4033 5679 5.468592 CATAGTCATGCACTCTCCATCTAC 58.531 45.833 0.00 0.00 36.43 2.59
4034 5680 2.360483 AGTCATGCACTCTCCATCTACG 59.640 50.000 0.00 0.00 0.00 3.51
4035 5681 2.359214 GTCATGCACTCTCCATCTACGA 59.641 50.000 0.00 0.00 0.00 3.43
4036 5682 3.005261 GTCATGCACTCTCCATCTACGAT 59.995 47.826 0.00 0.00 0.00 3.73
4037 5683 3.254411 TCATGCACTCTCCATCTACGATC 59.746 47.826 0.00 0.00 0.00 3.69
4038 5684 1.957177 TGCACTCTCCATCTACGATCC 59.043 52.381 0.00 0.00 0.00 3.36
4039 5685 1.271102 GCACTCTCCATCTACGATCCC 59.729 57.143 0.00 0.00 0.00 3.85
4040 5686 2.870175 CACTCTCCATCTACGATCCCT 58.130 52.381 0.00 0.00 0.00 4.20
4041 5687 2.817258 CACTCTCCATCTACGATCCCTC 59.183 54.545 0.00 0.00 0.00 4.30
4042 5688 2.224917 ACTCTCCATCTACGATCCCTCC 60.225 54.545 0.00 0.00 0.00 4.30
4043 5689 2.041081 CTCTCCATCTACGATCCCTCCT 59.959 54.545 0.00 0.00 0.00 3.69
4044 5690 2.447429 TCTCCATCTACGATCCCTCCTT 59.553 50.000 0.00 0.00 0.00 3.36
4045 5691 2.823154 CTCCATCTACGATCCCTCCTTC 59.177 54.545 0.00 0.00 0.00 3.46
4046 5692 2.447429 TCCATCTACGATCCCTCCTTCT 59.553 50.000 0.00 0.00 0.00 2.85
4047 5693 2.823154 CCATCTACGATCCCTCCTTCTC 59.177 54.545 0.00 0.00 0.00 2.87
4048 5694 3.491342 CATCTACGATCCCTCCTTCTCA 58.509 50.000 0.00 0.00 0.00 3.27
4049 5695 3.885976 TCTACGATCCCTCCTTCTCAT 57.114 47.619 0.00 0.00 0.00 2.90
4050 5696 3.757270 TCTACGATCCCTCCTTCTCATC 58.243 50.000 0.00 0.00 0.00 2.92
4051 5697 2.461300 ACGATCCCTCCTTCTCATCA 57.539 50.000 0.00 0.00 0.00 3.07
4052 5698 2.969628 ACGATCCCTCCTTCTCATCAT 58.030 47.619 0.00 0.00 0.00 2.45
4053 5699 2.632028 ACGATCCCTCCTTCTCATCATG 59.368 50.000 0.00 0.00 0.00 3.07
4054 5700 2.028294 CGATCCCTCCTTCTCATCATGG 60.028 54.545 0.00 0.00 0.00 3.66
4055 5701 1.135094 TCCCTCCTTCTCATCATGGC 58.865 55.000 0.00 0.00 0.00 4.40
4056 5702 1.138568 CCCTCCTTCTCATCATGGCT 58.861 55.000 0.00 0.00 0.00 4.75
4057 5703 1.072015 CCCTCCTTCTCATCATGGCTC 59.928 57.143 0.00 0.00 0.00 4.70
4058 5704 2.048601 CCTCCTTCTCATCATGGCTCT 58.951 52.381 0.00 0.00 0.00 4.09
4059 5705 3.237746 CCTCCTTCTCATCATGGCTCTA 58.762 50.000 0.00 0.00 0.00 2.43
4060 5706 3.258872 CCTCCTTCTCATCATGGCTCTAG 59.741 52.174 0.00 0.00 0.00 2.43
4061 5707 2.632028 TCCTTCTCATCATGGCTCTAGC 59.368 50.000 0.00 0.00 41.14 3.42
4062 5708 2.367894 CCTTCTCATCATGGCTCTAGCA 59.632 50.000 4.07 0.00 44.36 3.49
4063 5709 3.555377 CCTTCTCATCATGGCTCTAGCAG 60.555 52.174 4.07 0.00 44.36 4.24
4064 5710 2.954792 TCTCATCATGGCTCTAGCAGA 58.045 47.619 4.07 0.00 44.36 4.26
4065 5711 3.508426 TCTCATCATGGCTCTAGCAGAT 58.492 45.455 4.07 1.62 44.36 2.90
4066 5712 3.510753 TCTCATCATGGCTCTAGCAGATC 59.489 47.826 4.07 0.00 44.36 2.75
4067 5713 3.508426 TCATCATGGCTCTAGCAGATCT 58.492 45.455 4.07 0.00 44.36 2.75
4068 5714 3.258622 TCATCATGGCTCTAGCAGATCTG 59.741 47.826 18.84 18.84 44.36 2.90
4069 5715 2.675583 TCATGGCTCTAGCAGATCTGT 58.324 47.619 23.38 12.80 44.36 3.41
4070 5716 3.837355 TCATGGCTCTAGCAGATCTGTA 58.163 45.455 23.38 13.21 44.36 2.74
4071 5717 4.414677 TCATGGCTCTAGCAGATCTGTAT 58.585 43.478 23.38 14.90 44.36 2.29
4072 5718 4.837298 TCATGGCTCTAGCAGATCTGTATT 59.163 41.667 23.38 12.18 44.36 1.89
4073 5719 5.306419 TCATGGCTCTAGCAGATCTGTATTT 59.694 40.000 23.38 9.88 44.36 1.40
4074 5720 5.620738 TGGCTCTAGCAGATCTGTATTTT 57.379 39.130 23.38 7.62 44.36 1.82
4075 5721 5.363101 TGGCTCTAGCAGATCTGTATTTTG 58.637 41.667 23.38 10.98 44.36 2.44
4076 5722 5.129320 TGGCTCTAGCAGATCTGTATTTTGA 59.871 40.000 23.38 12.06 44.36 2.69
4077 5723 5.465056 GGCTCTAGCAGATCTGTATTTTGAC 59.535 44.000 23.38 8.85 44.36 3.18
4078 5724 6.045318 GCTCTAGCAGATCTGTATTTTGACA 58.955 40.000 23.38 0.00 41.59 3.58
4079 5725 6.705381 GCTCTAGCAGATCTGTATTTTGACAT 59.295 38.462 23.38 1.14 41.59 3.06
4080 5726 7.095691 GCTCTAGCAGATCTGTATTTTGACATC 60.096 40.741 23.38 2.76 41.59 3.06
4081 5727 5.980698 AGCAGATCTGTATTTTGACATCG 57.019 39.130 23.38 0.00 0.00 3.84
4082 5728 4.813161 AGCAGATCTGTATTTTGACATCGG 59.187 41.667 23.38 0.00 0.00 4.18
4083 5729 4.553547 GCAGATCTGTATTTTGACATCGGC 60.554 45.833 23.38 0.00 0.00 5.54
4084 5730 4.024556 CAGATCTGTATTTTGACATCGGCC 60.025 45.833 14.95 0.00 0.00 6.13
4085 5731 3.342377 TCTGTATTTTGACATCGGCCA 57.658 42.857 2.24 0.00 0.00 5.36
4086 5732 3.680490 TCTGTATTTTGACATCGGCCAA 58.320 40.909 2.24 0.00 0.00 4.52
4087 5733 3.689161 TCTGTATTTTGACATCGGCCAAG 59.311 43.478 2.24 0.00 0.00 3.61
4088 5734 3.680490 TGTATTTTGACATCGGCCAAGA 58.320 40.909 2.24 0.00 0.00 3.02
4089 5735 3.438781 TGTATTTTGACATCGGCCAAGAC 59.561 43.478 2.24 0.00 0.00 3.01
4090 5736 2.270352 TTTTGACATCGGCCAAGACT 57.730 45.000 2.24 0.00 0.00 3.24
4091 5737 2.270352 TTTGACATCGGCCAAGACTT 57.730 45.000 2.24 0.00 0.00 3.01
4092 5738 1.808411 TTGACATCGGCCAAGACTTC 58.192 50.000 2.24 0.00 0.00 3.01
4093 5739 0.389817 TGACATCGGCCAAGACTTCG 60.390 55.000 2.24 0.00 0.00 3.79
4094 5740 1.696832 GACATCGGCCAAGACTTCGC 61.697 60.000 2.24 0.00 0.00 4.70
4095 5741 2.125106 ATCGGCCAAGACTTCGCC 60.125 61.111 13.38 13.38 39.41 5.54
4100 5746 4.735132 CCAAGACTTCGCCGCGGA 62.735 66.667 33.48 5.65 0.00 5.54
4101 5747 3.181967 CAAGACTTCGCCGCGGAG 61.182 66.667 33.48 28.60 38.61 4.63
4102 5748 4.436998 AAGACTTCGCCGCGGAGG 62.437 66.667 33.48 20.45 36.69 4.30
4104 5750 3.818787 GACTTCGCCGCGGAGGTA 61.819 66.667 33.48 16.74 43.70 3.08
4105 5751 3.135056 GACTTCGCCGCGGAGGTAT 62.135 63.158 33.48 14.71 43.70 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 2.035961 TCTCGTCTCACCCTCAAAGTTG 59.964 50.000 0.00 0.00 0.00 3.16
68 76 1.237285 CCAGCCAGGGTTTGTTCTCG 61.237 60.000 0.00 0.00 0.00 4.04
267 300 8.395633 GCTTACGACATGGACTTGTTTAATATT 58.604 33.333 0.00 0.00 0.00 1.28
268 301 7.012044 GGCTTACGACATGGACTTGTTTAATAT 59.988 37.037 0.00 0.00 0.00 1.28
270 303 5.123344 GGCTTACGACATGGACTTGTTTAAT 59.877 40.000 0.00 0.00 0.00 1.40
273 306 2.812011 GGCTTACGACATGGACTTGTTT 59.188 45.455 0.00 0.00 0.00 2.83
292 325 2.286654 GCATATTGTCAGCTCTTTCGGC 60.287 50.000 0.00 0.00 0.00 5.54
293 326 3.201290 AGCATATTGTCAGCTCTTTCGG 58.799 45.455 0.00 0.00 32.05 4.30
303 336 1.227527 CCGCCGGAGCATATTGTCA 60.228 57.895 5.05 0.00 39.83 3.58
312 350 3.902086 GGTCTCTACCGCCGGAGC 61.902 72.222 11.71 0.00 35.62 4.70
330 368 4.456280 TCTCACCAGTAGTACAATGCAG 57.544 45.455 2.52 0.00 0.00 4.41
373 418 2.847327 ACTGACTGACTGGTGGAATG 57.153 50.000 0.00 0.00 0.00 2.67
374 419 3.480470 CAAACTGACTGACTGGTGGAAT 58.520 45.455 0.00 0.00 0.00 3.01
375 420 2.421388 CCAAACTGACTGACTGGTGGAA 60.421 50.000 0.00 0.00 32.57 3.53
376 421 1.140852 CCAAACTGACTGACTGGTGGA 59.859 52.381 0.00 0.00 32.57 4.02
377 422 1.597742 CCAAACTGACTGACTGGTGG 58.402 55.000 0.00 0.00 0.00 4.61
378 423 0.947244 GCCAAACTGACTGACTGGTG 59.053 55.000 0.00 0.00 0.00 4.17
379 424 0.546122 TGCCAAACTGACTGACTGGT 59.454 50.000 0.00 0.00 0.00 4.00
383 428 1.953559 TCTGTGCCAAACTGACTGAC 58.046 50.000 0.00 0.00 32.31 3.51
408 453 4.269183 TGCATCCCAGTGTTCGATTAATT 58.731 39.130 0.00 0.00 0.00 1.40
409 454 3.884895 TGCATCCCAGTGTTCGATTAAT 58.115 40.909 0.00 0.00 0.00 1.40
410 455 3.342377 TGCATCCCAGTGTTCGATTAA 57.658 42.857 0.00 0.00 0.00 1.40
416 461 3.059352 AGTAGTTGCATCCCAGTGTTC 57.941 47.619 0.00 0.00 0.00 3.18
454 499 0.034896 CCTTCGGTGCCAAGTACACT 59.965 55.000 0.00 0.00 38.14 3.55
485 531 2.265446 CGCTTAAAATTCGGTGCGC 58.735 52.632 0.00 0.00 37.13 6.09
487 533 0.170339 AGGCGCTTAAAATTCGGTGC 59.830 50.000 7.64 0.00 34.89 5.01
505 551 6.183360 GGAGGAGTACCAGTAGGAATTTGTAG 60.183 46.154 0.00 0.00 38.69 2.74
507 553 4.470304 GGAGGAGTACCAGTAGGAATTTGT 59.530 45.833 0.00 0.00 38.69 2.83
508 554 4.717280 AGGAGGAGTACCAGTAGGAATTTG 59.283 45.833 0.00 0.00 38.69 2.32
509 555 4.961585 AGGAGGAGTACCAGTAGGAATTT 58.038 43.478 0.00 0.00 38.69 1.82
520 566 2.585330 GTAGCCAGTAGGAGGAGTACC 58.415 57.143 0.00 0.00 36.89 3.34
534 583 1.760613 GCACTACTGGTATGGTAGCCA 59.239 52.381 0.00 0.00 39.95 4.75
535 584 2.040178 AGCACTACTGGTATGGTAGCC 58.960 52.381 0.00 0.00 39.95 3.93
536 585 3.099267 CAGCACTACTGGTATGGTAGC 57.901 52.381 0.00 0.00 43.19 3.58
620 675 4.081531 TGAATGAATGATTGTTGGGCTTCC 60.082 41.667 0.00 0.00 0.00 3.46
737 794 2.217510 ATACGTGAGGTGAGGTGAGT 57.782 50.000 0.00 0.00 0.00 3.41
777 834 1.938657 GCCTGCTCTGTCTGCGTCTA 61.939 60.000 0.00 0.00 0.00 2.59
792 849 0.462581 TTCGCTAATCTGCTGGCCTG 60.463 55.000 3.32 4.26 0.00 4.85
812 871 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
813 872 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
814 873 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
815 874 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
816 875 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
817 876 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
818 877 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
819 878 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
820 879 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
821 880 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
822 881 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
823 882 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
824 883 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
825 884 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
826 885 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
827 886 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
828 887 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
829 888 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
830 889 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
831 890 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
832 891 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
833 892 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
834 893 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
835 894 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
836 895 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
837 896 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
838 897 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
839 898 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
840 899 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
841 900 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1600 1665 3.432588 CGACGTCCTCCTGAGCGT 61.433 66.667 10.58 0.43 40.44 5.07
1672 1737 2.130426 GCCTCCTCGCATCCTGAGA 61.130 63.158 0.00 0.00 35.43 3.27
1752 1817 1.756430 CGAGAGTCTCCATCTCCACA 58.244 55.000 14.61 0.00 40.11 4.17
1754 1819 0.257328 AGCGAGAGTCTCCATCTCCA 59.743 55.000 14.61 0.00 40.11 3.86
1902 1967 1.685765 CACCTCCACCATCTCGGGA 60.686 63.158 0.00 0.00 40.22 5.14
1914 1979 1.075600 CCTCTCCTCCTCCACCTCC 60.076 68.421 0.00 0.00 0.00 4.30
2128 2193 2.740714 GCGACTGCGGGTGATTGAC 61.741 63.158 0.00 0.00 38.16 3.18
2253 2318 2.747855 GCGGAGGCCAGTTCCTTG 60.748 66.667 5.01 0.00 36.38 3.61
2406 2474 2.372074 TGGAGGATTGGTACGGCCC 61.372 63.158 0.00 0.00 36.04 5.80
2413 2481 2.933287 TGGGCGTGGAGGATTGGT 60.933 61.111 0.00 0.00 0.00 3.67
2475 2543 4.446311 CCTCCTTTCTTGAAGAGGTTGGAA 60.446 45.833 9.29 0.00 37.57 3.53
2511 2579 3.567797 GCGAGGGAGTTCATGCGC 61.568 66.667 0.00 0.00 37.60 6.09
2555 2623 1.807981 CTTGATCGGCGCGTTGGTA 60.808 57.895 8.43 0.00 0.00 3.25
2580 2648 3.374402 CGAGACGGAGGCTGTGGT 61.374 66.667 0.00 0.00 0.00 4.16
2868 2936 0.395173 AGTTGTCCGCCTTGGTGTTT 60.395 50.000 0.00 0.00 39.52 2.83
3117 3185 1.446272 CACCTCGGAAGTCGGAAGC 60.446 63.158 0.00 0.00 39.77 3.86
3122 3190 0.670546 ATGCAACACCTCGGAAGTCG 60.671 55.000 0.00 0.00 40.90 4.18
3146 3214 6.258947 CGTTTTTCTCTCTCTTTTCTCCAAGT 59.741 38.462 0.00 0.00 0.00 3.16
3198 3268 9.908152 CAATACCCGAAATAAGTTTCTTTTTCT 57.092 29.630 0.00 0.00 41.24 2.52
3204 3274 5.823312 ACCCAATACCCGAAATAAGTTTCT 58.177 37.500 0.00 0.00 41.24 2.52
3206 3276 8.598202 AATAACCCAATACCCGAAATAAGTTT 57.402 30.769 0.00 0.00 0.00 2.66
3209 3279 6.921307 GCAAATAACCCAATACCCGAAATAAG 59.079 38.462 0.00 0.00 0.00 1.73
3216 3286 1.335496 CCGCAAATAACCCAATACCCG 59.665 52.381 0.00 0.00 0.00 5.28
3234 3304 5.835113 ACCAAATCTCATGGAAAATACCG 57.165 39.130 0.00 0.00 40.56 4.02
3292 3362 7.121168 TCAATAACCCAATCTCACTGTCAATTC 59.879 37.037 0.00 0.00 0.00 2.17
3376 4986 3.981071 TGCGCATAAAGCTCCCTATAT 57.019 42.857 5.66 0.00 42.61 0.86
3432 5042 6.246420 AGACTGTAGACACATGAAATTTGC 57.754 37.500 0.00 0.00 33.14 3.68
3464 5074 7.429920 GCTCTTTCACTTTCTACGACTATACAG 59.570 40.741 0.00 0.00 0.00 2.74
3576 5222 2.675767 ACGTACGTGGTATATCAGCG 57.324 50.000 22.14 6.47 0.00 5.18
3600 5246 5.053739 GCAACACTACAAAAACGAAACGTAC 60.054 40.000 0.00 0.00 39.99 3.67
3606 5252 5.236655 TCATGCAACACTACAAAAACGAA 57.763 34.783 0.00 0.00 0.00 3.85
3607 5253 4.788201 GCTCATGCAACACTACAAAAACGA 60.788 41.667 0.00 0.00 39.41 3.85
3635 5281 4.635324 CCAAACACCAAAAGCATTGAACTT 59.365 37.500 4.02 0.00 0.00 2.66
3638 5284 4.478206 TCCAAACACCAAAAGCATTGAA 57.522 36.364 4.02 0.00 0.00 2.69
3640 5286 6.128227 CCAATATCCAAACACCAAAAGCATTG 60.128 38.462 0.00 0.00 0.00 2.82
3645 5291 4.690280 GCACCAATATCCAAACACCAAAAG 59.310 41.667 0.00 0.00 0.00 2.27
3649 5295 1.815613 CGCACCAATATCCAAACACCA 59.184 47.619 0.00 0.00 0.00 4.17
3650 5296 1.134175 CCGCACCAATATCCAAACACC 59.866 52.381 0.00 0.00 0.00 4.16
3711 5357 3.381272 CACACGAGGCCCAAAATATGATT 59.619 43.478 0.00 0.00 0.00 2.57
3765 5411 0.454600 GAGGTTGGTGATGCATGCAG 59.545 55.000 26.69 0.00 0.00 4.41
3802 5448 2.564062 CCTCTCCCAAACATTTGCATGT 59.436 45.455 0.00 0.00 46.34 3.21
3821 5467 2.242452 GGCTGTAAAAGGGAGGAATCCT 59.758 50.000 0.00 0.00 36.03 3.24
3822 5468 2.025321 TGGCTGTAAAAGGGAGGAATCC 60.025 50.000 0.00 0.00 0.00 3.01
3823 5469 3.282885 CTGGCTGTAAAAGGGAGGAATC 58.717 50.000 0.00 0.00 0.00 2.52
3824 5470 2.024941 CCTGGCTGTAAAAGGGAGGAAT 60.025 50.000 0.00 0.00 0.00 3.01
3825 5471 1.354368 CCTGGCTGTAAAAGGGAGGAA 59.646 52.381 0.00 0.00 0.00 3.36
3826 5472 0.991920 CCTGGCTGTAAAAGGGAGGA 59.008 55.000 0.00 0.00 0.00 3.71
3827 5473 0.991920 TCCTGGCTGTAAAAGGGAGG 59.008 55.000 0.00 0.00 0.00 4.30
3828 5474 2.879103 TTCCTGGCTGTAAAAGGGAG 57.121 50.000 0.00 0.00 0.00 4.30
3829 5475 3.227614 GTTTTCCTGGCTGTAAAAGGGA 58.772 45.455 0.00 0.00 0.00 4.20
3830 5476 2.962421 TGTTTTCCTGGCTGTAAAAGGG 59.038 45.455 0.00 0.00 0.00 3.95
3831 5477 3.636764 ACTGTTTTCCTGGCTGTAAAAGG 59.363 43.478 0.00 0.00 0.00 3.11
3832 5478 4.918810 ACTGTTTTCCTGGCTGTAAAAG 57.081 40.909 0.00 0.00 0.00 2.27
3833 5479 5.669164 AAACTGTTTTCCTGGCTGTAAAA 57.331 34.783 0.00 0.00 0.00 1.52
3834 5480 5.669164 AAAACTGTTTTCCTGGCTGTAAA 57.331 34.783 12.50 0.00 0.00 2.01
3835 5481 6.969993 ATAAAACTGTTTTCCTGGCTGTAA 57.030 33.333 20.72 1.47 34.19 2.41
3836 5482 8.644374 AATATAAAACTGTTTTCCTGGCTGTA 57.356 30.769 20.72 2.17 34.19 2.74
3837 5483 7.309805 GGAATATAAAACTGTTTTCCTGGCTGT 60.310 37.037 20.72 0.00 34.19 4.40
3838 5484 7.035612 GGAATATAAAACTGTTTTCCTGGCTG 58.964 38.462 20.72 0.00 34.19 4.85
3839 5485 6.723977 TGGAATATAAAACTGTTTTCCTGGCT 59.276 34.615 20.72 3.87 34.19 4.75
3840 5486 6.930731 TGGAATATAAAACTGTTTTCCTGGC 58.069 36.000 20.72 9.80 34.19 4.85
3841 5487 8.585018 ACTTGGAATATAAAACTGTTTTCCTGG 58.415 33.333 20.72 13.84 34.19 4.45
3842 5488 9.981114 AACTTGGAATATAAAACTGTTTTCCTG 57.019 29.630 20.72 14.16 34.19 3.86
3853 5499 9.171701 CGTCGAAACAAAACTTGGAATATAAAA 57.828 29.630 0.00 0.00 34.12 1.52
3854 5500 8.557864 TCGTCGAAACAAAACTTGGAATATAAA 58.442 29.630 0.00 0.00 34.12 1.40
3855 5501 8.085720 TCGTCGAAACAAAACTTGGAATATAA 57.914 30.769 0.00 0.00 34.12 0.98
3856 5502 7.655236 TCGTCGAAACAAAACTTGGAATATA 57.345 32.000 0.00 0.00 34.12 0.86
3857 5503 6.548441 TCGTCGAAACAAAACTTGGAATAT 57.452 33.333 0.00 0.00 34.12 1.28
3858 5504 5.987777 TCGTCGAAACAAAACTTGGAATA 57.012 34.783 0.00 0.00 34.12 1.75
3859 5505 4.886247 TCGTCGAAACAAAACTTGGAAT 57.114 36.364 0.00 0.00 34.12 3.01
3860 5506 4.260866 GGATCGTCGAAACAAAACTTGGAA 60.261 41.667 0.00 0.00 34.12 3.53
3861 5507 3.249080 GGATCGTCGAAACAAAACTTGGA 59.751 43.478 0.00 0.00 34.12 3.53
3862 5508 3.551551 GGATCGTCGAAACAAAACTTGG 58.448 45.455 0.00 0.00 34.12 3.61
3863 5509 3.215244 CGGATCGTCGAAACAAAACTTG 58.785 45.455 0.00 0.00 0.00 3.16
3864 5510 2.222445 CCGGATCGTCGAAACAAAACTT 59.778 45.455 0.00 0.00 0.00 2.66
3865 5511 1.796459 CCGGATCGTCGAAACAAAACT 59.204 47.619 0.00 0.00 0.00 2.66
3866 5512 1.528161 ACCGGATCGTCGAAACAAAAC 59.472 47.619 9.46 0.00 0.00 2.43
3867 5513 1.527736 CACCGGATCGTCGAAACAAAA 59.472 47.619 9.46 0.00 0.00 2.44
3868 5514 1.141645 CACCGGATCGTCGAAACAAA 58.858 50.000 9.46 0.00 0.00 2.83
3869 5515 0.314618 TCACCGGATCGTCGAAACAA 59.685 50.000 9.46 0.00 0.00 2.83
3870 5516 0.314618 TTCACCGGATCGTCGAAACA 59.685 50.000 9.46 0.00 0.00 2.83
3871 5517 0.989890 CTTCACCGGATCGTCGAAAC 59.010 55.000 9.46 0.00 0.00 2.78
3872 5518 0.734942 GCTTCACCGGATCGTCGAAA 60.735 55.000 9.46 0.00 0.00 3.46
3873 5519 1.153901 GCTTCACCGGATCGTCGAA 60.154 57.895 9.46 0.00 0.00 3.71
3874 5520 2.266376 CTGCTTCACCGGATCGTCGA 62.266 60.000 9.46 0.00 0.00 4.20
3875 5521 1.874019 CTGCTTCACCGGATCGTCG 60.874 63.158 9.46 0.00 0.00 5.12
3876 5522 0.526524 CTCTGCTTCACCGGATCGTC 60.527 60.000 9.46 0.00 0.00 4.20
3877 5523 1.251527 ACTCTGCTTCACCGGATCGT 61.252 55.000 9.46 0.00 0.00 3.73
3878 5524 0.526524 GACTCTGCTTCACCGGATCG 60.527 60.000 9.46 0.00 0.00 3.69
3879 5525 0.820871 AGACTCTGCTTCACCGGATC 59.179 55.000 9.46 0.00 0.00 3.36
3880 5526 0.820871 GAGACTCTGCTTCACCGGAT 59.179 55.000 9.46 0.00 0.00 4.18
3881 5527 0.539669 TGAGACTCTGCTTCACCGGA 60.540 55.000 9.46 0.00 0.00 5.14
3882 5528 0.389166 GTGAGACTCTGCTTCACCGG 60.389 60.000 0.00 0.00 0.00 5.28
3883 5529 0.730834 CGTGAGACTCTGCTTCACCG 60.731 60.000 3.68 0.00 0.00 4.94
3884 5530 1.011451 GCGTGAGACTCTGCTTCACC 61.011 60.000 3.68 0.00 0.00 4.02
3885 5531 1.011451 GGCGTGAGACTCTGCTTCAC 61.011 60.000 16.38 1.25 34.96 3.18
3886 5532 1.290324 GGCGTGAGACTCTGCTTCA 59.710 57.895 16.38 0.00 34.96 3.02
3887 5533 4.177229 GGCGTGAGACTCTGCTTC 57.823 61.111 16.38 2.00 34.96 3.86
3899 5545 4.514577 CTAGGCGTGGGAGGCGTG 62.515 72.222 0.00 0.00 41.99 5.34
3996 5642 3.161450 TATGGGAGAGTGGCCGCC 61.161 66.667 14.07 1.04 0.00 6.13
3997 5643 2.370647 GACTATGGGAGAGTGGCCGC 62.371 65.000 8.71 8.71 0.00 6.53
3998 5644 1.043116 TGACTATGGGAGAGTGGCCG 61.043 60.000 0.00 0.00 0.00 6.13
3999 5645 1.071385 CATGACTATGGGAGAGTGGCC 59.929 57.143 0.00 0.00 0.00 5.36
4000 5646 1.542108 GCATGACTATGGGAGAGTGGC 60.542 57.143 0.00 0.00 34.79 5.01
4001 5647 1.764723 TGCATGACTATGGGAGAGTGG 59.235 52.381 0.00 0.00 34.79 4.00
4002 5648 2.433604 AGTGCATGACTATGGGAGAGTG 59.566 50.000 0.00 0.00 34.79 3.51
4003 5649 2.697751 GAGTGCATGACTATGGGAGAGT 59.302 50.000 0.00 0.00 33.83 3.24
4004 5650 2.964464 AGAGTGCATGACTATGGGAGAG 59.036 50.000 0.00 0.00 33.83 3.20
4005 5651 2.961741 GAGAGTGCATGACTATGGGAGA 59.038 50.000 0.00 0.00 33.83 3.71
4006 5652 2.036992 GGAGAGTGCATGACTATGGGAG 59.963 54.545 0.00 0.00 33.83 4.30
4007 5653 2.042464 GGAGAGTGCATGACTATGGGA 58.958 52.381 0.00 0.00 33.83 4.37
4008 5654 1.764723 TGGAGAGTGCATGACTATGGG 59.235 52.381 0.00 0.00 33.83 4.00
4009 5655 3.324268 AGATGGAGAGTGCATGACTATGG 59.676 47.826 0.00 0.00 33.83 2.74
4010 5656 4.603989 AGATGGAGAGTGCATGACTATG 57.396 45.455 0.00 0.00 33.83 2.23
4011 5657 4.217334 CGTAGATGGAGAGTGCATGACTAT 59.783 45.833 0.00 0.00 33.83 2.12
4012 5658 3.565902 CGTAGATGGAGAGTGCATGACTA 59.434 47.826 0.00 0.00 33.83 2.59
4013 5659 2.360483 CGTAGATGGAGAGTGCATGACT 59.640 50.000 0.00 0.00 37.76 3.41
4014 5660 2.359214 TCGTAGATGGAGAGTGCATGAC 59.641 50.000 0.00 0.00 0.00 3.06
4015 5661 2.654863 TCGTAGATGGAGAGTGCATGA 58.345 47.619 0.00 0.00 0.00 3.07
4016 5662 3.573598 GATCGTAGATGGAGAGTGCATG 58.426 50.000 0.00 0.00 45.12 4.06
4017 5663 2.560542 GGATCGTAGATGGAGAGTGCAT 59.439 50.000 0.00 0.00 45.12 3.96
4018 5664 1.957177 GGATCGTAGATGGAGAGTGCA 59.043 52.381 0.00 0.00 45.12 4.57
4019 5665 1.271102 GGGATCGTAGATGGAGAGTGC 59.729 57.143 0.00 0.00 45.12 4.40
4020 5666 2.817258 GAGGGATCGTAGATGGAGAGTG 59.183 54.545 0.00 0.00 45.12 3.51
4021 5667 2.224917 GGAGGGATCGTAGATGGAGAGT 60.225 54.545 0.00 0.00 45.12 3.24
4022 5668 2.041081 AGGAGGGATCGTAGATGGAGAG 59.959 54.545 0.00 0.00 45.12 3.20
4023 5669 2.066592 AGGAGGGATCGTAGATGGAGA 58.933 52.381 0.00 0.00 45.12 3.71
4024 5670 2.595750 AGGAGGGATCGTAGATGGAG 57.404 55.000 0.00 0.00 45.12 3.86
4025 5671 2.447429 AGAAGGAGGGATCGTAGATGGA 59.553 50.000 0.00 0.00 45.12 3.41
4026 5672 2.823154 GAGAAGGAGGGATCGTAGATGG 59.177 54.545 0.00 0.00 45.12 3.51
4027 5673 3.491342 TGAGAAGGAGGGATCGTAGATG 58.509 50.000 0.00 0.00 45.12 2.90
4028 5674 3.885976 TGAGAAGGAGGGATCGTAGAT 57.114 47.619 0.00 0.00 45.12 1.98
4029 5675 3.138468 TGATGAGAAGGAGGGATCGTAGA 59.862 47.826 0.00 0.00 45.75 2.59
4030 5676 3.491342 TGATGAGAAGGAGGGATCGTAG 58.509 50.000 0.00 0.00 0.00 3.51
4031 5677 3.595190 TGATGAGAAGGAGGGATCGTA 57.405 47.619 0.00 0.00 0.00 3.43
4032 5678 2.461300 TGATGAGAAGGAGGGATCGT 57.539 50.000 0.00 0.00 0.00 3.73
4033 5679 2.028294 CCATGATGAGAAGGAGGGATCG 60.028 54.545 0.00 0.00 0.00 3.69
4034 5680 2.290197 GCCATGATGAGAAGGAGGGATC 60.290 54.545 0.00 0.00 0.00 3.36
4035 5681 1.704070 GCCATGATGAGAAGGAGGGAT 59.296 52.381 0.00 0.00 0.00 3.85
4036 5682 1.135094 GCCATGATGAGAAGGAGGGA 58.865 55.000 0.00 0.00 0.00 4.20
4037 5683 1.072015 GAGCCATGATGAGAAGGAGGG 59.928 57.143 0.00 0.00 0.00 4.30
4038 5684 2.048601 AGAGCCATGATGAGAAGGAGG 58.951 52.381 0.00 0.00 0.00 4.30
4039 5685 3.306225 GCTAGAGCCATGATGAGAAGGAG 60.306 52.174 0.00 0.00 34.31 3.69
4040 5686 2.632028 GCTAGAGCCATGATGAGAAGGA 59.368 50.000 0.00 0.00 34.31 3.36
4041 5687 2.367894 TGCTAGAGCCATGATGAGAAGG 59.632 50.000 0.00 0.00 41.18 3.46
4042 5688 3.321396 TCTGCTAGAGCCATGATGAGAAG 59.679 47.826 0.00 0.00 41.18 2.85
4043 5689 3.303049 TCTGCTAGAGCCATGATGAGAA 58.697 45.455 0.00 0.00 41.18 2.87
4044 5690 2.954792 TCTGCTAGAGCCATGATGAGA 58.045 47.619 0.00 0.00 41.18 3.27
4045 5691 3.512329 AGATCTGCTAGAGCCATGATGAG 59.488 47.826 0.00 0.00 41.18 2.90
4046 5692 3.258622 CAGATCTGCTAGAGCCATGATGA 59.741 47.826 10.38 0.00 41.18 2.92
4047 5693 3.007074 ACAGATCTGCTAGAGCCATGATG 59.993 47.826 22.83 0.00 41.18 3.07
4048 5694 3.241156 ACAGATCTGCTAGAGCCATGAT 58.759 45.455 22.83 0.76 41.18 2.45
4049 5695 2.675583 ACAGATCTGCTAGAGCCATGA 58.324 47.619 22.83 0.00 41.18 3.07
4050 5696 4.804868 ATACAGATCTGCTAGAGCCATG 57.195 45.455 22.83 0.00 41.18 3.66
4051 5697 5.822132 AAATACAGATCTGCTAGAGCCAT 57.178 39.130 22.83 2.28 41.18 4.40
4052 5698 5.129320 TCAAAATACAGATCTGCTAGAGCCA 59.871 40.000 22.83 0.00 41.18 4.75
4053 5699 5.465056 GTCAAAATACAGATCTGCTAGAGCC 59.535 44.000 22.83 1.44 41.18 4.70
4054 5700 6.045318 TGTCAAAATACAGATCTGCTAGAGC 58.955 40.000 22.83 7.14 42.50 4.09
4055 5701 7.114670 CGATGTCAAAATACAGATCTGCTAGAG 59.885 40.741 22.83 8.74 31.70 2.43
4056 5702 6.920210 CGATGTCAAAATACAGATCTGCTAGA 59.080 38.462 22.83 9.33 31.70 2.43
4057 5703 6.145209 CCGATGTCAAAATACAGATCTGCTAG 59.855 42.308 22.83 7.18 31.70 3.42
4058 5704 5.985530 CCGATGTCAAAATACAGATCTGCTA 59.014 40.000 22.83 13.87 31.70 3.49
4059 5705 4.813161 CCGATGTCAAAATACAGATCTGCT 59.187 41.667 22.83 12.16 31.70 4.24
4060 5706 4.553547 GCCGATGTCAAAATACAGATCTGC 60.554 45.833 22.83 4.26 31.70 4.26
4061 5707 4.024556 GGCCGATGTCAAAATACAGATCTG 60.025 45.833 21.37 21.37 31.70 2.90
4062 5708 4.130118 GGCCGATGTCAAAATACAGATCT 58.870 43.478 0.00 0.00 31.70 2.75
4063 5709 3.876914 TGGCCGATGTCAAAATACAGATC 59.123 43.478 0.00 0.00 31.70 2.75
4064 5710 3.884895 TGGCCGATGTCAAAATACAGAT 58.115 40.909 0.00 0.00 31.70 2.90
4065 5711 3.342377 TGGCCGATGTCAAAATACAGA 57.658 42.857 0.00 0.00 31.70 3.41
4066 5712 3.689161 TCTTGGCCGATGTCAAAATACAG 59.311 43.478 0.00 0.00 35.24 2.74
4067 5713 3.438781 GTCTTGGCCGATGTCAAAATACA 59.561 43.478 0.00 0.00 35.24 2.29
4068 5714 3.689649 AGTCTTGGCCGATGTCAAAATAC 59.310 43.478 0.00 0.00 35.24 1.89
4069 5715 3.950397 AGTCTTGGCCGATGTCAAAATA 58.050 40.909 0.00 0.00 35.24 1.40
4070 5716 2.795329 AGTCTTGGCCGATGTCAAAAT 58.205 42.857 0.00 0.00 35.24 1.82
4071 5717 2.270352 AGTCTTGGCCGATGTCAAAA 57.730 45.000 0.00 0.00 35.24 2.44
4072 5718 2.151202 GAAGTCTTGGCCGATGTCAAA 58.849 47.619 0.00 0.00 35.24 2.69
4073 5719 1.808411 GAAGTCTTGGCCGATGTCAA 58.192 50.000 0.00 0.00 34.29 3.18
4074 5720 0.389817 CGAAGTCTTGGCCGATGTCA 60.390 55.000 0.00 0.00 0.00 3.58
4075 5721 1.696832 GCGAAGTCTTGGCCGATGTC 61.697 60.000 8.30 0.00 0.00 3.06
4076 5722 1.741770 GCGAAGTCTTGGCCGATGT 60.742 57.895 8.30 0.00 0.00 3.06
4077 5723 2.464459 GGCGAAGTCTTGGCCGATG 61.464 63.158 21.12 0.00 44.61 3.84
4078 5724 2.125106 GGCGAAGTCTTGGCCGAT 60.125 61.111 21.12 0.00 44.61 4.18
4083 5729 4.735132 TCCGCGGCGAAGTCTTGG 62.735 66.667 25.92 4.14 0.00 3.61
4084 5730 3.181967 CTCCGCGGCGAAGTCTTG 61.182 66.667 25.92 4.96 0.00 3.02
4085 5731 4.436998 CCTCCGCGGCGAAGTCTT 62.437 66.667 25.92 0.00 0.00 3.01
4087 5733 3.135056 ATACCTCCGCGGCGAAGTC 62.135 63.158 25.92 0.00 35.61 3.01
4088 5734 3.145551 ATACCTCCGCGGCGAAGT 61.146 61.111 25.92 18.98 35.61 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.