Multiple sequence alignment - TraesCS3A01G208700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G208700 chr3A 100.000 5568 0 0 1 5568 369466365 369460798 0.000000e+00 10283.0
1 TraesCS3A01G208700 chr3A 88.800 125 11 2 4995 5117 729199969 729199846 3.470000e-32 150.0
2 TraesCS3A01G208700 chr3A 88.281 128 12 2 4992 5117 729540129 729540255 3.470000e-32 150.0
3 TraesCS3A01G208700 chr3A 76.471 255 40 17 16 260 681331266 681331510 2.720000e-23 121.0
4 TraesCS3A01G208700 chr3B 92.377 2230 117 26 3033 5221 367678921 367681138 0.000000e+00 3127.0
5 TraesCS3A01G208700 chr3B 94.495 1962 65 9 769 2689 367675617 367677576 0.000000e+00 2985.0
6 TraesCS3A01G208700 chr3B 86.409 596 76 4 3463 4054 828828162 828828756 0.000000e+00 647.0
7 TraesCS3A01G208700 chr3B 83.503 588 70 9 1755 2333 828826835 828827404 1.780000e-144 523.0
8 TraesCS3A01G208700 chr3B 79.251 694 80 23 1036 1702 828826171 828826827 5.160000e-115 425.0
9 TraesCS3A01G208700 chr3B 95.111 225 11 0 529 753 367675333 367675557 6.860000e-94 355.0
10 TraesCS3A01G208700 chr3B 90.278 216 21 0 5215 5430 367681234 367681449 3.280000e-72 283.0
11 TraesCS3A01G208700 chr3B 88.073 218 24 2 5216 5432 367682212 367682428 1.990000e-64 257.0
12 TraesCS3A01G208700 chr3B 90.506 158 15 0 5002 5159 367681600 367681757 5.650000e-50 209.0
13 TraesCS3A01G208700 chr3B 85.714 182 22 3 2856 3034 571752509 571752689 7.360000e-44 189.0
14 TraesCS3A01G208700 chr3B 93.023 129 4 2 2744 2870 367678792 367678917 3.430000e-42 183.0
15 TraesCS3A01G208700 chr3B 86.713 143 11 8 602 739 828825797 828825936 9.660000e-33 152.0
16 TraesCS3A01G208700 chr3B 81.053 190 34 2 4995 5183 31664453 31664265 3.470000e-32 150.0
17 TraesCS3A01G208700 chr3B 96.250 80 2 1 2674 2753 367677644 367677722 4.530000e-26 130.0
18 TraesCS3A01G208700 chr3B 100.000 29 0 0 4712 4740 644679735 644679763 3.000000e-03 54.7
19 TraesCS3A01G208700 chr3D 95.356 1895 59 9 744 2611 282957605 282955713 0.000000e+00 2985.0
20 TraesCS3A01G208700 chr3D 96.421 1509 38 8 3033 4528 282955110 282953605 0.000000e+00 2473.0
21 TraesCS3A01G208700 chr3D 82.679 1299 141 34 1036 2295 610994051 610995304 0.000000e+00 1075.0
22 TraesCS3A01G208700 chr3D 85.696 790 78 19 3447 4230 610997097 610997857 0.000000e+00 800.0
23 TraesCS3A01G208700 chr3D 96.377 276 3 4 2597 2870 282955384 282955114 1.100000e-121 448.0
24 TraesCS3A01G208700 chr3D 85.333 375 52 2 5 379 282958999 282958628 8.750000e-103 385.0
25 TraesCS3A01G208700 chr3D 97.015 134 4 0 620 753 282957762 282957629 5.610000e-55 226.0
26 TraesCS3A01G208700 chr3D 89.474 171 18 0 1772 1942 602796395 602796225 3.380000e-52 217.0
27 TraesCS3A01G208700 chr3D 88.095 168 16 4 2871 3035 160889347 160889513 4.400000e-46 196.0
28 TraesCS3A01G208700 chr3D 86.932 176 19 3 2862 3034 79558715 79558541 1.580000e-45 195.0
29 TraesCS3A01G208700 chr3D 87.413 143 10 8 602 739 610993696 610993835 2.080000e-34 158.0
30 TraesCS3A01G208700 chr3D 85.075 67 3 4 4693 4753 584931162 584931097 1.670000e-05 62.1
31 TraesCS3A01G208700 chr3D 96.774 31 1 0 4552 4582 282953486 282953456 1.000000e-02 52.8
32 TraesCS3A01G208700 chr1B 88.623 167 15 3 2871 3034 416773346 416773511 3.400000e-47 200.0
33 TraesCS3A01G208700 chr1B 81.081 185 33 2 4996 5179 512765138 512765321 4.490000e-31 147.0
34 TraesCS3A01G208700 chr2B 88.235 170 14 5 2869 3034 157579036 157579203 1.220000e-46 198.0
35 TraesCS3A01G208700 chr2B 87.429 175 17 4 2863 3034 248103536 248103708 4.400000e-46 196.0
36 TraesCS3A01G208700 chr2A 86.813 182 19 4 2863 3040 758262622 758262802 1.220000e-46 198.0
37 TraesCS3A01G208700 chr5D 87.356 174 17 4 2865 3034 312116361 312116189 1.580000e-45 195.0
38 TraesCS3A01G208700 chr5B 84.974 193 19 7 4996 5185 43751816 43752001 2.650000e-43 187.0
39 TraesCS3A01G208700 chr5A 86.982 169 18 4 2869 3034 50764440 50764607 2.650000e-43 187.0
40 TraesCS3A01G208700 chr7A 79.638 221 43 2 4995 5214 108806131 108805912 2.080000e-34 158.0
41 TraesCS3A01G208700 chr7D 85.811 148 17 3 4995 5140 524553858 524554003 2.690000e-33 154.0
42 TraesCS3A01G208700 chr1A 77.835 194 40 3 16 208 589612049 589611858 3.520000e-22 117.0
43 TraesCS3A01G208700 chr4B 90.000 50 5 0 4709 4758 623322618 623322667 1.290000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G208700 chr3A 369460798 369466365 5567 True 10283.000000 10283 100.000000 1 5568 1 chr3A.!!$R1 5567
1 TraesCS3A01G208700 chr3B 367675333 367682428 7095 False 941.125000 3127 92.514125 529 5432 8 chr3B.!!$F3 4903
2 TraesCS3A01G208700 chr3B 828825797 828828756 2959 False 436.750000 647 83.969000 602 4054 4 chr3B.!!$F4 3452
3 TraesCS3A01G208700 chr3D 282953456 282958999 5543 True 1094.966667 2985 94.546000 5 4582 6 chr3D.!!$R4 4577
4 TraesCS3A01G208700 chr3D 610993696 610997857 4161 False 677.666667 1075 85.262667 602 4230 3 chr3D.!!$F2 3628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 351 0.036010 GGATCGGATGGCCCATAGTG 60.036 60.000 0.00 0.00 34.14 2.74 F
506 507 0.242825 GTTGAGTCACCGATCGGACA 59.757 55.000 39.55 24.53 38.96 4.02 F
1429 2223 0.247458 GCGCTCGTGCTCAAATTCTC 60.247 55.000 7.97 0.00 36.97 2.87 F
1567 2383 1.098712 AGCTCCCGTCTCTCGATCAC 61.099 60.000 0.00 0.00 42.86 3.06 F
1892 2720 2.804368 AAGAGCTCGAGAACCGCGTG 62.804 60.000 18.75 0.00 38.37 5.34 F
2821 5480 1.065491 ACAGCTTGGCGATTATGACCA 60.065 47.619 0.00 0.00 0.00 4.02 F
3705 7220 0.680921 CCGCCCAACAACATCAGGAT 60.681 55.000 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 2257 0.250467 GAGGTCTGGTTGCTGCAGAA 60.250 55.000 20.43 2.96 0.00 3.02 R
1567 2383 1.154782 CGATCGCATGAATTCGCCG 60.155 57.895 0.26 3.61 0.00 6.46 R
2793 5452 0.323302 TCGCCAAGCTGTGACCATAA 59.677 50.000 0.00 0.00 0.00 1.90 R
2794 5453 0.541392 ATCGCCAAGCTGTGACCATA 59.459 50.000 0.00 0.00 0.00 2.74 R
3697 7212 0.754217 CTGCCAACCCCATCCTGATG 60.754 60.000 0.00 0.00 38.51 3.07 R
4063 7587 0.976641 TTCTCCAGATGCTCGTGGTT 59.023 50.000 0.00 0.00 35.14 3.67 R
5442 9176 0.175302 ATGTCGCTGAAGGAGAGCTG 59.825 55.000 0.00 0.00 34.03 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.102154 CCATTTGGGCAGACGCAATA 58.898 50.000 0.00 0.00 46.72 1.90
76 77 0.595310 GGATGAAGTCCGAGCGCTAC 60.595 60.000 11.50 4.99 37.23 3.58
79 80 3.048941 GAAGTCCGAGCGCTACCGT 62.049 63.158 11.50 0.00 36.67 4.83
81 82 3.807538 GTCCGAGCGCTACCGTCA 61.808 66.667 11.50 0.00 36.67 4.35
82 83 3.506096 TCCGAGCGCTACCGTCAG 61.506 66.667 11.50 0.00 36.67 3.51
111 112 3.684402 CTCCCAGGAGAGACGGAGTGT 62.684 61.905 8.05 0.00 43.25 3.55
120 121 4.078516 ACGGAGTGTAAGGCGGGC 62.079 66.667 0.00 0.00 42.51 6.13
121 122 4.077184 CGGAGTGTAAGGCGGGCA 62.077 66.667 3.78 0.00 0.00 5.36
142 143 2.066393 CATCTCCTCCTCGGGGCAA 61.066 63.158 0.00 0.00 31.12 4.52
150 151 4.096003 CTCGGGGCAACGTGGGAT 62.096 66.667 0.00 0.00 34.94 3.85
154 155 2.351276 GGGCAACGTGGGATGAGT 59.649 61.111 0.00 0.00 37.60 3.41
160 161 2.180159 AACGTGGGATGAGTTCCGGG 62.180 60.000 0.00 0.00 46.52 5.73
167 168 0.245539 GATGAGTTCCGGGTCAACGA 59.754 55.000 0.00 0.00 35.47 3.85
170 171 1.071071 TGAGTTCCGGGTCAACGAATT 59.929 47.619 0.00 0.00 35.47 2.17
171 172 1.463444 GAGTTCCGGGTCAACGAATTG 59.537 52.381 0.00 0.00 37.14 2.32
178 179 1.279846 GGGTCAACGAATTGGGAGGTA 59.720 52.381 0.00 0.00 36.39 3.08
194 195 1.704070 AGGTATAGGACTCGGATCCGT 59.296 52.381 32.15 15.85 44.22 4.69
196 197 2.228343 GGTATAGGACTCGGATCCGTTG 59.772 54.545 32.15 26.18 44.22 4.10
197 198 2.068834 ATAGGACTCGGATCCGTTGT 57.931 50.000 32.15 28.87 44.22 3.32
201 202 0.442699 GACTCGGATCCGTTGTTTGC 59.557 55.000 32.15 16.35 40.74 3.68
203 204 0.953471 CTCGGATCCGTTGTTTGCCA 60.953 55.000 32.15 10.04 40.74 4.92
208 209 1.184322 ATCCGTTGTTTGCCATGCCA 61.184 50.000 0.00 0.00 0.00 4.92
218 219 0.178967 TGCCATGCCAAAGAAGGTCA 60.179 50.000 0.00 0.00 0.00 4.02
228 229 0.457851 AAGAAGGTCAGAGATCGCCG 59.542 55.000 0.00 0.00 0.00 6.46
232 233 2.122167 GGTCAGAGATCGCCGGACT 61.122 63.158 5.05 0.00 0.00 3.85
234 235 1.077716 TCAGAGATCGCCGGACTGA 60.078 57.895 5.05 6.72 35.65 3.41
245 246 1.371183 CGGACTGAAGCTTGTGGGA 59.629 57.895 2.10 0.00 0.00 4.37
259 260 1.118838 GTGGGATGAGAGGAGTGGAG 58.881 60.000 0.00 0.00 0.00 3.86
260 261 0.689080 TGGGATGAGAGGAGTGGAGC 60.689 60.000 0.00 0.00 0.00 4.70
278 279 2.204090 GGAGGGGGTGGAGTGGAA 60.204 66.667 0.00 0.00 0.00 3.53
281 282 0.914417 GAGGGGGTGGAGTGGAATGA 60.914 60.000 0.00 0.00 0.00 2.57
286 287 2.557452 GGGGTGGAGTGGAATGAAATGT 60.557 50.000 0.00 0.00 0.00 2.71
288 289 4.340617 GGGTGGAGTGGAATGAAATGTAA 58.659 43.478 0.00 0.00 0.00 2.41
290 291 5.010282 GGTGGAGTGGAATGAAATGTAACT 58.990 41.667 0.00 0.00 0.00 2.24
303 304 5.702209 TGAAATGTAACTAGGGTTTCGTTCC 59.298 40.000 0.00 0.00 33.12 3.62
319 320 0.899720 TTCCGAGTGCGAATAGGGTT 59.100 50.000 0.00 0.00 40.82 4.11
326 327 4.662145 GAGTGCGAATAGGGTTCAATTTG 58.338 43.478 0.00 0.00 0.00 2.32
328 329 5.250200 AGTGCGAATAGGGTTCAATTTGTA 58.750 37.500 0.00 0.00 0.00 2.41
336 337 4.207165 AGGGTTCAATTTGTATGGGATCG 58.793 43.478 0.00 0.00 0.00 3.69
346 347 2.450304 TGGGATCGGATGGCCCAT 60.450 61.111 12.24 0.00 46.57 4.00
348 349 1.200760 TGGGATCGGATGGCCCATAG 61.201 60.000 12.24 0.00 46.57 2.23
350 351 0.036010 GGATCGGATGGCCCATAGTG 60.036 60.000 0.00 0.00 34.14 2.74
351 352 0.976641 GATCGGATGGCCCATAGTGA 59.023 55.000 0.00 0.00 34.14 3.41
354 355 0.535102 CGGATGGCCCATAGTGAACC 60.535 60.000 0.00 0.00 34.14 3.62
363 364 3.173965 CCCATAGTGAACCGGATCCTAT 58.826 50.000 9.46 12.24 0.00 2.57
368 369 3.850752 AGTGAACCGGATCCTATGAGAT 58.149 45.455 9.46 0.00 0.00 2.75
371 372 2.704190 ACCGGATCCTATGAGATGGT 57.296 50.000 9.46 3.92 0.00 3.55
379 380 2.430694 TCCTATGAGATGGTTGTGTCCG 59.569 50.000 0.00 0.00 0.00 4.79
380 381 2.430694 CCTATGAGATGGTTGTGTCCGA 59.569 50.000 0.00 0.00 0.00 4.55
381 382 3.118775 CCTATGAGATGGTTGTGTCCGAA 60.119 47.826 0.00 0.00 0.00 4.30
382 383 3.634397 ATGAGATGGTTGTGTCCGAAT 57.366 42.857 0.00 0.00 0.00 3.34
383 384 4.753516 ATGAGATGGTTGTGTCCGAATA 57.246 40.909 0.00 0.00 0.00 1.75
385 386 2.858344 GAGATGGTTGTGTCCGAATACG 59.142 50.000 0.00 0.00 39.43 3.06
386 387 1.326548 GATGGTTGTGTCCGAATACGC 59.673 52.381 0.00 0.00 38.29 4.42
387 388 0.671163 TGGTTGTGTCCGAATACGCC 60.671 55.000 0.00 0.00 38.29 5.68
389 390 1.446445 TTGTGTCCGAATACGCCCG 60.446 57.895 0.00 0.00 38.29 6.13
390 391 2.584143 GTGTCCGAATACGCCCGG 60.584 66.667 0.00 0.00 46.57 5.73
391 392 3.840594 TGTCCGAATACGCCCGGG 61.841 66.667 19.09 19.09 45.36 5.73
392 393 3.841758 GTCCGAATACGCCCGGGT 61.842 66.667 24.63 5.39 45.36 5.28
393 394 3.076278 TCCGAATACGCCCGGGTT 61.076 61.111 24.63 12.52 45.36 4.11
394 395 2.125024 CCGAATACGCCCGGGTTT 60.125 61.111 24.63 12.11 41.89 3.27
396 397 1.708193 CCGAATACGCCCGGGTTTTC 61.708 60.000 24.63 17.68 41.89 2.29
397 398 1.708193 CGAATACGCCCGGGTTTTCC 61.708 60.000 24.63 3.18 39.75 3.13
425 426 6.676558 ATCCAAATATGGGCTGGATATAAGG 58.323 40.000 2.13 0.99 46.01 2.69
427 428 6.125029 CCAAATATGGGCTGGATATAAGGAG 58.875 44.000 0.00 0.00 43.51 3.69
428 429 6.297243 CCAAATATGGGCTGGATATAAGGAGT 60.297 42.308 0.00 0.00 43.51 3.85
429 430 7.092444 CCAAATATGGGCTGGATATAAGGAGTA 60.092 40.741 0.00 0.00 43.51 2.59
430 431 7.682787 AATATGGGCTGGATATAAGGAGTAG 57.317 40.000 0.00 0.00 0.00 2.57
431 432 3.173965 TGGGCTGGATATAAGGAGTAGC 58.826 50.000 0.00 0.00 0.00 3.58
432 433 2.166664 GGGCTGGATATAAGGAGTAGCG 59.833 54.545 0.00 0.00 0.00 4.26
433 434 2.166664 GGCTGGATATAAGGAGTAGCGG 59.833 54.545 0.00 0.00 0.00 5.52
434 435 2.826725 GCTGGATATAAGGAGTAGCGGT 59.173 50.000 0.00 0.00 0.00 5.68
435 436 3.119424 GCTGGATATAAGGAGTAGCGGTC 60.119 52.174 0.00 0.00 0.00 4.79
436 437 4.079970 CTGGATATAAGGAGTAGCGGTCA 58.920 47.826 0.00 0.00 0.00 4.02
448 449 2.328099 GCGGTCAGCTCAGGTTTGG 61.328 63.158 0.00 0.00 44.04 3.28
449 450 1.672356 CGGTCAGCTCAGGTTTGGG 60.672 63.158 0.00 0.00 0.00 4.12
460 461 4.809673 CTCAGGTTTGGGCTGAATTTTAC 58.190 43.478 0.00 0.00 0.00 2.01
461 462 4.219115 TCAGGTTTGGGCTGAATTTTACA 58.781 39.130 0.00 0.00 0.00 2.41
462 463 4.280677 TCAGGTTTGGGCTGAATTTTACAG 59.719 41.667 0.00 0.00 38.27 2.74
463 464 3.578282 AGGTTTGGGCTGAATTTTACAGG 59.422 43.478 0.00 0.00 36.09 4.00
465 466 4.556233 GTTTGGGCTGAATTTTACAGGTC 58.444 43.478 0.00 0.00 36.09 3.85
466 467 2.802719 TGGGCTGAATTTTACAGGTCC 58.197 47.619 0.00 0.00 36.09 4.46
467 468 1.743394 GGGCTGAATTTTACAGGTCCG 59.257 52.381 0.00 0.00 36.09 4.79
468 469 1.743394 GGCTGAATTTTACAGGTCCGG 59.257 52.381 0.00 0.00 36.09 5.14
470 471 2.817844 GCTGAATTTTACAGGTCCGGTT 59.182 45.455 0.00 0.00 36.09 4.44
471 472 3.365969 GCTGAATTTTACAGGTCCGGTTG 60.366 47.826 0.00 1.20 36.09 3.77
472 473 3.150767 TGAATTTTACAGGTCCGGTTGG 58.849 45.455 0.00 0.00 0.00 3.77
473 474 3.181442 TGAATTTTACAGGTCCGGTTGGA 60.181 43.478 0.00 0.00 43.88 3.53
483 484 2.818751 TCCGGTTGGATAGCCATTTT 57.181 45.000 0.00 0.00 45.46 1.82
486 487 2.099098 CCGGTTGGATAGCCATTTTCAC 59.901 50.000 0.00 0.00 45.46 3.18
487 488 2.223249 CGGTTGGATAGCCATTTTCACG 60.223 50.000 0.00 0.00 45.46 4.35
488 489 2.752903 GGTTGGATAGCCATTTTCACGT 59.247 45.455 0.00 0.00 45.46 4.49
489 490 3.192633 GGTTGGATAGCCATTTTCACGTT 59.807 43.478 0.00 0.00 45.46 3.99
490 491 4.165779 GTTGGATAGCCATTTTCACGTTG 58.834 43.478 0.00 0.00 45.46 4.10
494 495 4.201822 GGATAGCCATTTTCACGTTGAGTC 60.202 45.833 0.00 0.00 0.00 3.36
495 496 2.571212 AGCCATTTTCACGTTGAGTCA 58.429 42.857 0.00 0.00 0.00 3.41
496 497 2.290641 AGCCATTTTCACGTTGAGTCAC 59.709 45.455 0.00 0.00 0.00 3.67
499 500 2.296831 TTTTCACGTTGAGTCACCGA 57.703 45.000 17.56 0.00 0.00 4.69
501 502 2.060326 TTCACGTTGAGTCACCGATC 57.940 50.000 17.56 0.00 0.00 3.69
503 504 1.071019 CACGTTGAGTCACCGATCGG 61.071 60.000 32.20 32.20 42.03 4.18
505 506 0.797249 CGTTGAGTCACCGATCGGAC 60.797 60.000 39.55 27.19 38.96 4.79
506 507 0.242825 GTTGAGTCACCGATCGGACA 59.757 55.000 39.55 24.53 38.96 4.02
508 509 1.226717 GAGTCACCGATCGGACAGC 60.227 63.158 39.55 23.85 38.96 4.40
509 510 2.202756 GTCACCGATCGGACAGCC 60.203 66.667 39.55 17.87 38.96 4.85
510 511 3.458163 TCACCGATCGGACAGCCC 61.458 66.667 39.55 0.00 38.96 5.19
522 523 2.915659 CAGCCCGGCCCGACTATA 60.916 66.667 3.71 0.00 0.00 1.31
523 524 2.916181 AGCCCGGCCCGACTATAC 60.916 66.667 3.71 0.00 0.00 1.47
524 525 4.353437 GCCCGGCCCGACTATACG 62.353 72.222 3.71 0.00 0.00 3.06
644 1330 0.538516 ACATGGTTTTGGCACCGCTA 60.539 50.000 0.00 0.00 40.09 4.26
737 1426 5.738118 ATGCACAATCCTTTTTGTTGTTG 57.262 34.783 0.00 0.00 37.73 3.33
778 1517 3.109151 ACCTCCATTTCGTACACCCATA 58.891 45.455 0.00 0.00 0.00 2.74
1315 2103 2.174349 CGGCTGCGCTCTTTGTTC 59.826 61.111 9.73 0.00 0.00 3.18
1391 2179 1.904287 TCTGGTATGCGGCTTGTTTT 58.096 45.000 0.00 0.00 0.00 2.43
1429 2223 0.247458 GCGCTCGTGCTCAAATTCTC 60.247 55.000 7.97 0.00 36.97 2.87
1459 2257 4.863689 TGCGATTTGATTTGCATCGATTTT 59.136 33.333 7.74 0.00 41.96 1.82
1484 2288 2.320587 GCAACCAGACCTCGTGCTG 61.321 63.158 0.00 0.00 0.00 4.41
1519 2332 3.797039 TGATGGCCTTAGAATTCTGTCG 58.203 45.455 18.47 5.76 0.00 4.35
1567 2383 1.098712 AGCTCCCGTCTCTCGATCAC 61.099 60.000 0.00 0.00 42.86 3.06
1604 2426 3.153919 TCGAACTAATTGCTTGCCCTTT 58.846 40.909 0.00 0.00 0.00 3.11
1609 2431 6.183360 CGAACTAATTGCTTGCCCTTTGTATA 60.183 38.462 0.00 0.00 0.00 1.47
1892 2720 2.804368 AAGAGCTCGAGAACCGCGTG 62.804 60.000 18.75 0.00 38.37 5.34
2267 3107 4.248859 CTGTTAGTCTGGTTCATGAGGTG 58.751 47.826 0.00 0.00 0.00 4.00
2422 3505 6.542821 AGTCAACAAAGACATATTCTGGGAA 58.457 36.000 0.00 0.00 40.98 3.97
2570 3722 7.039784 TGTCTTGATTACTTTTATGCTGGCTTT 60.040 33.333 0.00 0.00 0.00 3.51
2573 3725 4.862902 TTACTTTTATGCTGGCTTTGCA 57.137 36.364 3.31 3.31 44.95 4.08
2821 5480 1.065491 ACAGCTTGGCGATTATGACCA 60.065 47.619 0.00 0.00 0.00 4.02
2829 5488 1.258982 GCGATTATGACCAGAACAGCG 59.741 52.381 0.00 0.00 0.00 5.18
2918 5577 9.950680 TTTGTCTTTTCTAAAGATGCTAACAAG 57.049 29.630 5.28 0.00 0.00 3.16
2919 5578 8.677148 TGTCTTTTCTAAAGATGCTAACAAGT 57.323 30.769 5.28 0.00 0.00 3.16
2920 5579 8.559536 TGTCTTTTCTAAAGATGCTAACAAGTG 58.440 33.333 5.28 0.00 0.00 3.16
2921 5580 8.774586 GTCTTTTCTAAAGATGCTAACAAGTGA 58.225 33.333 5.28 0.00 0.00 3.41
2922 5581 8.774586 TCTTTTCTAAAGATGCTAACAAGTGAC 58.225 33.333 0.00 0.00 0.00 3.67
2923 5582 8.677148 TTTTCTAAAGATGCTAACAAGTGACT 57.323 30.769 0.00 0.00 0.00 3.41
2924 5583 9.772973 TTTTCTAAAGATGCTAACAAGTGACTA 57.227 29.630 0.00 0.00 0.00 2.59
2925 5584 8.758633 TTCTAAAGATGCTAACAAGTGACTAC 57.241 34.615 0.00 0.00 0.00 2.73
2926 5585 7.892609 TCTAAAGATGCTAACAAGTGACTACA 58.107 34.615 0.00 0.00 0.00 2.74
2927 5586 8.531982 TCTAAAGATGCTAACAAGTGACTACAT 58.468 33.333 0.00 0.00 0.00 2.29
2928 5587 9.803315 CTAAAGATGCTAACAAGTGACTACATA 57.197 33.333 0.00 0.00 0.00 2.29
2929 5588 8.480643 AAAGATGCTAACAAGTGACTACATAC 57.519 34.615 0.00 0.00 0.00 2.39
2930 5589 6.266323 AGATGCTAACAAGTGACTACATACG 58.734 40.000 0.00 0.00 0.00 3.06
2931 5590 5.632244 TGCTAACAAGTGACTACATACGA 57.368 39.130 0.00 0.00 0.00 3.43
2932 5591 6.016213 TGCTAACAAGTGACTACATACGAA 57.984 37.500 0.00 0.00 0.00 3.85
2933 5592 6.090783 TGCTAACAAGTGACTACATACGAAG 58.909 40.000 0.00 0.00 0.00 3.79
2934 5593 5.004535 GCTAACAAGTGACTACATACGAAGC 59.995 44.000 0.00 0.00 0.00 3.86
2935 5594 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2936 5595 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
2937 5596 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
2938 5597 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
2939 5598 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
2940 5599 7.601130 ACAAGTGACTACATACGAAGCAAAATA 59.399 33.333 0.00 0.00 0.00 1.40
2941 5600 8.440059 CAAGTGACTACATACGAAGCAAAATAA 58.560 33.333 0.00 0.00 0.00 1.40
2942 5601 8.186178 AGTGACTACATACGAAGCAAAATAAG 57.814 34.615 0.00 0.00 0.00 1.73
2943 5602 7.817962 AGTGACTACATACGAAGCAAAATAAGT 59.182 33.333 0.00 0.00 0.00 2.24
2944 5603 7.898309 GTGACTACATACGAAGCAAAATAAGTG 59.102 37.037 0.00 0.00 0.00 3.16
2945 5604 7.815549 TGACTACATACGAAGCAAAATAAGTGA 59.184 33.333 0.00 0.00 0.00 3.41
2946 5605 8.542497 ACTACATACGAAGCAAAATAAGTGAA 57.458 30.769 0.00 0.00 0.00 3.18
2947 5606 9.162764 ACTACATACGAAGCAAAATAAGTGAAT 57.837 29.630 0.00 0.00 0.00 2.57
2948 5607 9.638300 CTACATACGAAGCAAAATAAGTGAATC 57.362 33.333 0.00 0.00 0.00 2.52
2949 5608 8.268850 ACATACGAAGCAAAATAAGTGAATCT 57.731 30.769 0.00 0.00 0.00 2.40
2950 5609 9.378551 ACATACGAAGCAAAATAAGTGAATCTA 57.621 29.630 0.00 0.00 0.00 1.98
2951 5610 9.638300 CATACGAAGCAAAATAAGTGAATCTAC 57.362 33.333 0.00 0.00 0.00 2.59
2952 5611 7.667043 ACGAAGCAAAATAAGTGAATCTACA 57.333 32.000 0.00 0.00 0.00 2.74
2953 5612 7.519002 ACGAAGCAAAATAAGTGAATCTACAC 58.481 34.615 0.00 0.00 40.60 2.90
3028 5687 9.855021 AAAAAGACAAATATTTAGGAATGGACG 57.145 29.630 0.00 0.00 0.00 4.79
3029 5688 7.568199 AAGACAAATATTTAGGAATGGACGG 57.432 36.000 0.00 0.00 0.00 4.79
3030 5689 6.895782 AGACAAATATTTAGGAATGGACGGA 58.104 36.000 0.00 0.00 0.00 4.69
3031 5690 6.992715 AGACAAATATTTAGGAATGGACGGAG 59.007 38.462 0.00 0.00 0.00 4.63
3283 5947 9.516314 GTTTTGTTGATAAGCCTTGGAATATAC 57.484 33.333 0.00 0.00 0.00 1.47
3359 6844 5.649831 GCCACTATCTTTTGAGAACATTCCT 59.350 40.000 0.00 0.00 0.00 3.36
3436 6940 4.841246 ACTCTCTTTCCCTAACTGTCACAT 59.159 41.667 0.00 0.00 0.00 3.21
3493 7007 7.229506 GGCTGAACATGCTAATTAATCTTACCT 59.770 37.037 0.00 0.00 0.00 3.08
3697 7212 3.047877 CCTCGTCCGCCCAACAAC 61.048 66.667 0.00 0.00 0.00 3.32
3705 7220 0.680921 CCGCCCAACAACATCAGGAT 60.681 55.000 0.00 0.00 0.00 3.24
3710 7225 1.272648 CCAACAACATCAGGATGGGGT 60.273 52.381 13.40 7.96 42.91 4.95
4194 7718 2.050077 CTGAGCAGCGTGACGACA 60.050 61.111 10.10 0.00 0.00 4.35
4403 7927 5.591067 AGAAGATTAGAAGGTACTCAGACGG 59.409 44.000 0.00 0.00 38.49 4.79
4528 8052 6.401367 CGAAATGCCAATTTTCTTCATGTTCC 60.401 38.462 0.00 0.00 36.10 3.62
4529 8053 3.911868 TGCCAATTTTCTTCATGTTCCG 58.088 40.909 0.00 0.00 0.00 4.30
4589 8208 6.237201 CGACAAATGGCGTTTTTATTAGCTTC 60.237 38.462 0.99 0.00 42.66 3.86
4591 8210 6.926272 ACAAATGGCGTTTTTATTAGCTTCAA 59.074 30.769 0.99 0.00 0.00 2.69
4643 8262 4.502645 CGGCAAAACCAAGTTCAAAAGTAG 59.497 41.667 0.00 0.00 39.03 2.57
4676 8295 9.606631 AAAATAAAAGACATTAGGCAACAACAA 57.393 25.926 0.00 0.00 41.41 2.83
4680 8299 6.952773 AAGACATTAGGCAACAACAAAGTA 57.047 33.333 0.00 0.00 41.41 2.24
4685 8304 8.956533 ACATTAGGCAACAACAAAGTAAAAAT 57.043 26.923 0.00 0.00 41.41 1.82
4719 8338 6.350277 CGGACACCTGAATATATTACTCCCTC 60.350 46.154 0.00 0.00 0.00 4.30
4739 8358 5.127031 CCCTCCAATCCAAAATAAATGTCGT 59.873 40.000 0.00 0.00 0.00 4.34
4754 8373 6.481954 AAATGTCGTAGCTTTGAACTAAGG 57.518 37.500 0.00 0.00 0.00 2.69
4758 8377 6.514947 TGTCGTAGCTTTGAACTAAGGTTAA 58.485 36.000 0.00 0.00 37.14 2.01
4762 8381 7.874016 TCGTAGCTTTGAACTAAGGTTAATTCA 59.126 33.333 0.00 0.00 37.14 2.57
4766 8385 7.939588 AGCTTTGAACTAAGGTTAATTCAGAGT 59.060 33.333 11.06 0.31 36.29 3.24
4772 8391 9.274206 GAACTAAGGTTAATTCAGAGTGAAAGT 57.726 33.333 0.00 0.00 36.49 2.66
4824 8451 7.410174 AGAGGAGAGATATAGGTACCAAGATG 58.590 42.308 15.94 0.00 0.00 2.90
4835 8462 2.397751 CCAAGATGTGGCATCGTCC 58.602 57.895 0.00 0.00 41.72 4.79
4841 8468 1.940613 GATGTGGCATCGTCCCTTAAC 59.059 52.381 0.00 0.00 0.00 2.01
4843 8470 0.390735 GTGGCATCGTCCCTTAACGT 60.391 55.000 0.00 0.00 43.08 3.99
4845 8472 0.390735 GGCATCGTCCCTTAACGTGT 60.391 55.000 0.00 0.00 43.08 4.49
4849 8476 3.304190 GCATCGTCCCTTAACGTGTTTTT 60.304 43.478 0.00 0.00 43.08 1.94
4904 8531 5.063186 CGTGATTCTGAAGAGATGGTTCTTG 59.937 44.000 0.00 0.00 37.53 3.02
4909 8536 5.928976 TCTGAAGAGATGGTTCTTGTCAAA 58.071 37.500 0.00 0.00 37.53 2.69
4925 8552 2.095567 GTCAAAGATGAGTGCATTGCGT 60.096 45.455 3.84 0.00 35.88 5.24
4932 8559 1.089920 GAGTGCATTGCGTGAATCCT 58.910 50.000 3.84 0.00 0.00 3.24
4956 8583 7.275560 CCTAAATTTTTCAAAGGATGGTAAGCG 59.724 37.037 0.00 0.00 0.00 4.68
4962 8589 1.453155 AAGGATGGTAAGCGCAACAG 58.547 50.000 11.47 0.00 0.00 3.16
4978 8605 3.181487 GCAACAGATGGACTCTCTCTCTC 60.181 52.174 0.00 0.00 29.16 3.20
4980 8607 4.156455 ACAGATGGACTCTCTCTCTCTC 57.844 50.000 0.00 0.00 29.16 3.20
4981 8608 3.782523 ACAGATGGACTCTCTCTCTCTCT 59.217 47.826 0.00 0.00 29.16 3.10
4982 8609 4.141620 ACAGATGGACTCTCTCTCTCTCTC 60.142 50.000 0.00 0.00 29.16 3.20
4984 8611 4.346418 AGATGGACTCTCTCTCTCTCTCTC 59.654 50.000 0.00 0.00 0.00 3.20
4985 8612 3.449918 TGGACTCTCTCTCTCTCTCTCA 58.550 50.000 0.00 0.00 0.00 3.27
4986 8613 4.040047 TGGACTCTCTCTCTCTCTCTCAT 58.960 47.826 0.00 0.00 0.00 2.90
4987 8614 4.101585 TGGACTCTCTCTCTCTCTCTCATC 59.898 50.000 0.00 0.00 0.00 2.92
4988 8615 4.101585 GGACTCTCTCTCTCTCTCTCATCA 59.898 50.000 0.00 0.00 0.00 3.07
4989 8616 5.221803 GGACTCTCTCTCTCTCTCTCATCAT 60.222 48.000 0.00 0.00 0.00 2.45
4990 8617 5.618236 ACTCTCTCTCTCTCTCTCATCATG 58.382 45.833 0.00 0.00 0.00 3.07
4992 8619 3.140623 TCTCTCTCTCTCTCATCATGCG 58.859 50.000 0.00 0.00 0.00 4.73
4993 8620 2.880268 CTCTCTCTCTCTCATCATGCGT 59.120 50.000 0.00 0.00 0.00 5.24
5014 8647 4.537015 GTGAGTAAAATGCACAGAACCAC 58.463 43.478 0.00 0.00 32.96 4.16
5021 8654 2.719531 TGCACAGAACCACCACTTTA 57.280 45.000 0.00 0.00 0.00 1.85
5026 8659 3.560068 CACAGAACCACCACTTTAGTGTC 59.440 47.826 8.91 0.19 44.21 3.67
5036 8669 3.546020 CCACTTTAGTGTCACAACTTGCG 60.546 47.826 5.62 0.00 44.21 4.85
5047 8680 3.003897 TCACAACTTGCGTAAAACCATCC 59.996 43.478 0.00 0.00 0.00 3.51
5072 8705 7.125113 CCTTTACAAAACATGACATTTTGCAC 58.875 34.615 15.97 0.00 46.43 4.57
5128 8761 9.003112 CACTAATGAAAAATGCTAAGTGATTCG 57.997 33.333 0.00 0.00 36.13 3.34
5129 8762 6.875926 AATGAAAAATGCTAAGTGATTCGC 57.124 33.333 0.00 0.00 0.00 4.70
5132 8765 5.181056 TGAAAAATGCTAAGTGATTCGCTGA 59.819 36.000 0.00 0.00 0.00 4.26
5133 8766 5.824904 AAAATGCTAAGTGATTCGCTGAT 57.175 34.783 0.00 0.00 0.00 2.90
5134 8767 4.808077 AATGCTAAGTGATTCGCTGATG 57.192 40.909 0.00 0.00 0.00 3.07
5141 8774 4.039151 AGTGATTCGCTGATGTCACTAG 57.961 45.455 17.14 0.00 46.76 2.57
5144 8777 4.032217 GTGATTCGCTGATGTCACTAGTTG 59.968 45.833 0.00 0.00 38.29 3.16
5150 8783 3.624861 GCTGATGTCACTAGTTGATTGGG 59.375 47.826 0.00 0.00 36.32 4.12
5218 8952 2.368875 TGTTGACTTGGTCTTCTCTCCC 59.631 50.000 0.00 0.00 33.15 4.30
5226 8960 0.833949 GTCTTCTCTCCCCCACCATC 59.166 60.000 0.00 0.00 0.00 3.51
5229 8963 4.227134 CTCTCCCCCACCATCGCG 62.227 72.222 0.00 0.00 0.00 5.87
5249 8983 4.168291 CTCCTCCCTTGCCTCGGC 62.168 72.222 0.00 0.00 42.35 5.54
5278 9012 3.616721 AGGCGCACGACACTCCTT 61.617 61.111 10.83 0.00 0.00 3.36
5288 9022 0.606673 GACACTCCTTTGCCTGGTCC 60.607 60.000 0.00 0.00 0.00 4.46
5293 9027 2.348998 CTTTGCCTGGTCCGAGCT 59.651 61.111 4.71 0.00 0.00 4.09
5310 9044 2.282674 TAGCGAGTCCACCGGTGT 60.283 61.111 31.80 15.16 38.28 4.16
5334 9068 2.501610 GTGGATCTCGCACCTCCC 59.498 66.667 0.00 0.00 0.00 4.30
5350 9084 1.191489 TCCCAGTTCGTGGCAGATGA 61.191 55.000 0.00 0.00 46.45 2.92
5353 9087 0.926155 CAGTTCGTGGCAGATGATCG 59.074 55.000 0.00 0.00 0.00 3.69
5371 9105 4.459089 GCGTGGGAGGAGGCAGAC 62.459 72.222 0.00 0.00 0.00 3.51
5373 9107 2.607750 GTGGGAGGAGGCAGACCA 60.608 66.667 0.00 0.00 39.06 4.02
5378 9112 1.220477 GAGGAGGCAGACCAAGCTC 59.780 63.158 0.00 0.00 39.06 4.09
5387 9121 1.185618 AGACCAAGCTCGTGCACCTA 61.186 55.000 12.15 0.00 42.74 3.08
5424 9158 2.801996 CGTGGTAAACGCTCGCGA 60.802 61.111 18.98 9.26 46.99 5.87
5439 9173 2.876645 CGAGAAGCGCGGTCTGTC 60.877 66.667 19.56 5.70 0.00 3.51
5440 9174 2.258591 GAGAAGCGCGGTCTGTCA 59.741 61.111 19.56 0.00 0.00 3.58
5441 9175 1.803519 GAGAAGCGCGGTCTGTCAG 60.804 63.158 19.56 0.00 0.00 3.51
5442 9176 3.482783 GAAGCGCGGTCTGTCAGC 61.483 66.667 12.91 0.00 0.00 4.26
5443 9177 4.299547 AAGCGCGGTCTGTCAGCA 62.300 61.111 12.91 0.00 37.09 4.41
5446 9180 4.731612 CGCGGTCTGTCAGCAGCT 62.732 66.667 0.00 0.00 42.29 4.24
5447 9181 2.813042 GCGGTCTGTCAGCAGCTC 60.813 66.667 0.00 0.00 42.29 4.09
5448 9182 2.969016 CGGTCTGTCAGCAGCTCT 59.031 61.111 0.00 0.00 42.29 4.09
5449 9183 1.153862 CGGTCTGTCAGCAGCTCTC 60.154 63.158 0.00 0.00 42.29 3.20
5450 9184 1.217779 GGTCTGTCAGCAGCTCTCC 59.782 63.158 0.00 0.00 42.29 3.71
5451 9185 1.257055 GGTCTGTCAGCAGCTCTCCT 61.257 60.000 0.00 0.00 42.29 3.69
5452 9186 0.607620 GTCTGTCAGCAGCTCTCCTT 59.392 55.000 0.00 0.00 42.29 3.36
5453 9187 0.894141 TCTGTCAGCAGCTCTCCTTC 59.106 55.000 0.00 0.00 42.29 3.46
5454 9188 0.607112 CTGTCAGCAGCTCTCCTTCA 59.393 55.000 0.00 0.00 35.77 3.02
5457 9191 1.810441 CAGCAGCTCTCCTTCAGCG 60.810 63.158 0.00 0.00 42.14 5.18
5458 9192 1.981312 AGCAGCTCTCCTTCAGCGA 60.981 57.895 0.00 0.00 42.14 4.93
5459 9193 1.809209 GCAGCTCTCCTTCAGCGAC 60.809 63.158 0.00 0.00 42.14 5.19
5460 9194 1.588597 CAGCTCTCCTTCAGCGACA 59.411 57.895 0.00 0.00 42.14 4.35
5461 9195 0.175302 CAGCTCTCCTTCAGCGACAT 59.825 55.000 0.00 0.00 42.14 3.06
5462 9196 0.459489 AGCTCTCCTTCAGCGACATC 59.541 55.000 0.00 0.00 42.14 3.06
5463 9197 0.459489 GCTCTCCTTCAGCGACATCT 59.541 55.000 0.00 0.00 0.00 2.90
5464 9198 1.134848 GCTCTCCTTCAGCGACATCTT 60.135 52.381 0.00 0.00 0.00 2.40
5482 9216 3.423154 CGTCAGAAGGGCGCCAAC 61.423 66.667 30.85 18.26 0.00 3.77
5484 9218 2.032528 TCAGAAGGGCGCCAACAG 59.967 61.111 30.85 15.11 0.00 3.16
5485 9219 2.032528 CAGAAGGGCGCCAACAGA 59.967 61.111 30.85 0.00 0.00 3.41
5487 9221 1.600916 AGAAGGGCGCCAACAGAAC 60.601 57.895 30.85 8.87 0.00 3.01
5488 9222 1.896660 GAAGGGCGCCAACAGAACA 60.897 57.895 30.85 0.00 0.00 3.18
5490 9224 1.455383 AAGGGCGCCAACAGAACAAG 61.455 55.000 30.85 0.00 0.00 3.16
5492 9226 1.896660 GGCGCCAACAGAACAAGGA 60.897 57.895 24.80 0.00 0.00 3.36
5493 9227 1.282875 GCGCCAACAGAACAAGGAC 59.717 57.895 0.00 0.00 0.00 3.85
5495 9229 1.282875 GCCAACAGAACAAGGACGC 59.717 57.895 0.00 0.00 0.00 5.19
5496 9230 1.444119 GCCAACAGAACAAGGACGCA 61.444 55.000 0.00 0.00 0.00 5.24
5499 9233 0.468226 AACAGAACAAGGACGCAGGA 59.532 50.000 0.00 0.00 0.00 3.86
5500 9234 0.468226 ACAGAACAAGGACGCAGGAA 59.532 50.000 0.00 0.00 0.00 3.36
5501 9235 0.868406 CAGAACAAGGACGCAGGAAC 59.132 55.000 0.00 0.00 0.00 3.62
5502 9236 0.600255 AGAACAAGGACGCAGGAACG 60.600 55.000 0.00 0.00 39.50 3.95
5509 9243 4.655527 ACGCAGGAACGTCTGAAG 57.344 55.556 8.35 4.07 44.43 3.02
5510 9244 2.038690 ACGCAGGAACGTCTGAAGA 58.961 52.632 8.35 0.00 44.43 2.87
5513 9247 1.347817 GCAGGAACGTCTGAAGAGCG 61.348 60.000 8.35 0.00 36.93 5.03
5514 9248 1.080434 AGGAACGTCTGAAGAGCGC 60.080 57.895 0.00 0.00 0.00 5.92
5515 9249 2.437343 GGAACGTCTGAAGAGCGCG 61.437 63.158 0.00 0.00 0.00 6.86
5545 9279 3.762247 CCACCAGGCCCATTTGCG 61.762 66.667 0.00 0.00 0.00 4.85
5546 9280 4.440127 CACCAGGCCCATTTGCGC 62.440 66.667 0.00 0.00 0.00 6.09
5547 9281 4.992740 ACCAGGCCCATTTGCGCA 62.993 61.111 5.66 5.66 0.00 6.09
5548 9282 3.693471 CCAGGCCCATTTGCGCAA 61.693 61.111 21.02 21.02 0.00 4.85
5549 9283 2.343018 CAGGCCCATTTGCGCAAA 59.657 55.556 35.19 35.19 34.46 3.68
5551 9285 1.907807 AGGCCCATTTGCGCAAAGA 60.908 52.632 35.62 18.83 33.32 2.52
5552 9286 1.005156 GGCCCATTTGCGCAAAGAA 60.005 52.632 35.62 18.08 33.32 2.52
5553 9287 0.602372 GGCCCATTTGCGCAAAGAAA 60.602 50.000 35.62 17.70 33.32 2.52
5554 9288 0.512518 GCCCATTTGCGCAAAGAAAC 59.487 50.000 35.62 22.87 33.32 2.78
5555 9289 0.783579 CCCATTTGCGCAAAGAAACG 59.216 50.000 35.62 21.80 33.32 3.60
5556 9290 1.486439 CCATTTGCGCAAAGAAACGT 58.514 45.000 35.62 18.76 33.32 3.99
5558 9292 1.451651 CATTTGCGCAAAGAAACGTCC 59.548 47.619 35.62 0.00 33.32 4.79
5559 9293 0.248702 TTTGCGCAAAGAAACGTCCC 60.249 50.000 30.63 0.00 0.00 4.46
5560 9294 2.065906 TTGCGCAAAGAAACGTCCCC 62.066 55.000 22.78 0.00 0.00 4.81
5561 9295 2.554272 CGCAAAGAAACGTCCCCG 59.446 61.111 0.00 0.00 40.83 5.73
5562 9296 2.951458 GCAAAGAAACGTCCCCGG 59.049 61.111 0.00 0.00 38.78 5.73
5565 9299 1.228033 AAAGAAACGTCCCCGGTGG 60.228 57.895 0.00 0.82 38.78 4.61
5567 9301 4.324991 GAAACGTCCCCGGTGGCT 62.325 66.667 0.00 0.00 38.78 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.552365 ACATGGATCCGGCCGCAG 62.552 66.667 22.85 7.49 0.00 5.18
37 38 0.753262 AGCGGGAATCTATTGCGTCT 59.247 50.000 0.00 0.00 0.00 4.18
39 40 0.532862 CCAGCGGGAATCTATTGCGT 60.533 55.000 0.00 0.00 35.59 5.24
79 80 3.965026 CTGGGAGGAGTCCGCCTGA 62.965 68.421 28.64 16.03 45.05 3.86
81 82 4.787280 CCTGGGAGGAGTCCGCCT 62.787 72.222 28.64 0.00 45.05 5.52
82 83 4.779733 TCCTGGGAGGAGTCCGCC 62.780 72.222 23.05 23.05 45.05 6.13
101 102 2.348888 CCCGCCTTACACTCCGTCT 61.349 63.158 0.00 0.00 0.00 4.18
103 104 4.078516 GCCCGCCTTACACTCCGT 62.079 66.667 0.00 0.00 0.00 4.69
111 112 1.223487 GAGATGGTTGCCCGCCTTA 59.777 57.895 0.00 0.00 0.00 2.69
117 118 1.529309 GAGGAGGAGATGGTTGCCC 59.471 63.158 0.00 0.00 0.00 5.36
119 120 1.144936 CCGAGGAGGAGATGGTTGC 59.855 63.158 0.00 0.00 45.00 4.17
120 121 1.690219 CCCCGAGGAGGAGATGGTTG 61.690 65.000 0.00 0.00 45.00 3.77
121 122 1.383248 CCCCGAGGAGGAGATGGTT 60.383 63.158 0.00 0.00 45.00 3.67
142 143 2.656069 CCCGGAACTCATCCCACGT 61.656 63.158 0.73 0.00 46.39 4.49
150 151 0.682852 ATTCGTTGACCCGGAACTCA 59.317 50.000 0.73 0.00 0.00 3.41
154 155 0.606944 CCCAATTCGTTGACCCGGAA 60.607 55.000 0.73 0.00 0.00 4.30
160 161 4.100498 TCCTATACCTCCCAATTCGTTGAC 59.900 45.833 0.00 0.00 0.00 3.18
167 168 3.116862 TCCGAGTCCTATACCTCCCAATT 60.117 47.826 0.00 0.00 0.00 2.32
170 171 1.526315 TCCGAGTCCTATACCTCCCA 58.474 55.000 0.00 0.00 0.00 4.37
171 172 2.621147 GGATCCGAGTCCTATACCTCCC 60.621 59.091 0.00 0.00 35.32 4.30
178 179 2.068834 ACAACGGATCCGAGTCCTAT 57.931 50.000 39.55 13.57 42.83 2.57
194 195 2.485124 CCTTCTTTGGCATGGCAAACAA 60.485 45.455 35.64 30.49 0.00 2.83
196 197 1.070601 ACCTTCTTTGGCATGGCAAAC 59.929 47.619 35.64 0.79 0.00 2.93
197 198 1.344114 GACCTTCTTTGGCATGGCAAA 59.656 47.619 36.17 36.17 0.00 3.68
201 202 2.089980 CTCTGACCTTCTTTGGCATGG 58.910 52.381 0.00 0.00 0.00 3.66
203 204 3.681034 CGATCTCTGACCTTCTTTGGCAT 60.681 47.826 0.00 0.00 0.00 4.40
208 209 1.134965 CGGCGATCTCTGACCTTCTTT 60.135 52.381 0.00 0.00 0.00 2.52
218 219 2.010582 GCTTCAGTCCGGCGATCTCT 62.011 60.000 9.30 0.00 0.00 3.10
228 229 1.003580 TCATCCCACAAGCTTCAGTCC 59.996 52.381 0.00 0.00 0.00 3.85
232 233 1.280133 CCTCTCATCCCACAAGCTTCA 59.720 52.381 0.00 0.00 0.00 3.02
234 235 1.558756 CTCCTCTCATCCCACAAGCTT 59.441 52.381 0.00 0.00 0.00 3.74
245 246 0.754957 CTCCGCTCCACTCCTCTCAT 60.755 60.000 0.00 0.00 0.00 2.90
260 261 4.715130 TCCACTCCACCCCCTCCG 62.715 72.222 0.00 0.00 0.00 4.63
278 279 6.373495 GGAACGAAACCCTAGTTACATTTCAT 59.627 38.462 0.00 0.00 34.19 2.57
303 304 2.004583 TTGAACCCTATTCGCACTCG 57.995 50.000 0.00 0.00 0.00 4.18
319 320 4.397420 CCATCCGATCCCATACAAATTGA 58.603 43.478 0.00 0.00 0.00 2.57
326 327 1.299976 GGGCCATCCGATCCCATAC 59.700 63.158 4.39 0.00 39.82 2.39
328 329 2.450304 TGGGCCATCCGATCCCAT 60.450 61.111 0.00 0.00 44.62 4.00
336 337 0.535102 CGGTTCACTATGGGCCATCC 60.535 60.000 25.07 15.80 0.00 3.51
346 347 4.448720 TCTCATAGGATCCGGTTCACTA 57.551 45.455 14.36 12.41 0.00 2.74
348 349 3.306364 CCATCTCATAGGATCCGGTTCAC 60.306 52.174 14.36 4.19 0.00 3.18
350 351 2.900546 ACCATCTCATAGGATCCGGTTC 59.099 50.000 5.98 1.67 0.00 3.62
351 352 2.977808 ACCATCTCATAGGATCCGGTT 58.022 47.619 5.98 0.00 0.00 4.44
354 355 3.070159 ACACAACCATCTCATAGGATCCG 59.930 47.826 5.98 0.00 0.00 4.18
363 364 3.674955 CGTATTCGGACACAACCATCTCA 60.675 47.826 0.00 0.00 0.00 3.27
368 369 0.671163 GGCGTATTCGGACACAACCA 60.671 55.000 0.00 0.00 37.56 3.67
371 372 1.446445 CGGGCGTATTCGGACACAA 60.446 57.895 0.00 0.00 37.56 3.33
379 380 1.378882 GGGAAAACCCGGGCGTATTC 61.379 60.000 24.08 18.89 35.07 1.75
380 381 1.378911 GGGAAAACCCGGGCGTATT 60.379 57.895 24.08 10.69 35.07 1.89
381 382 1.928714 ATGGGAAAACCCGGGCGTAT 61.929 55.000 24.08 3.93 39.07 3.06
382 383 1.270414 TATGGGAAAACCCGGGCGTA 61.270 55.000 24.08 5.82 39.07 4.42
383 384 1.928714 ATATGGGAAAACCCGGGCGT 61.929 55.000 24.08 5.74 39.07 5.68
385 386 0.826256 GGATATGGGAAAACCCGGGC 60.826 60.000 24.08 3.19 39.07 6.13
386 387 0.553819 TGGATATGGGAAAACCCGGG 59.446 55.000 22.25 22.25 39.07 5.73
387 388 2.445682 TTGGATATGGGAAAACCCGG 57.554 50.000 0.00 0.00 39.07 5.73
402 403 5.795343 TCCTTATATCCAGCCCATATTTGGA 59.205 40.000 3.41 0.00 46.92 3.53
405 406 6.977244 ACTCCTTATATCCAGCCCATATTT 57.023 37.500 0.00 0.00 0.00 1.40
406 407 6.100424 GCTACTCCTTATATCCAGCCCATATT 59.900 42.308 0.00 0.00 0.00 1.28
407 408 5.604650 GCTACTCCTTATATCCAGCCCATAT 59.395 44.000 0.00 0.00 0.00 1.78
409 410 3.777522 GCTACTCCTTATATCCAGCCCAT 59.222 47.826 0.00 0.00 0.00 4.00
411 412 2.166664 CGCTACTCCTTATATCCAGCCC 59.833 54.545 0.00 0.00 0.00 5.19
413 414 2.826725 ACCGCTACTCCTTATATCCAGC 59.173 50.000 0.00 0.00 0.00 4.85
414 415 4.079970 TGACCGCTACTCCTTATATCCAG 58.920 47.826 0.00 0.00 0.00 3.86
415 416 4.079970 CTGACCGCTACTCCTTATATCCA 58.920 47.826 0.00 0.00 0.00 3.41
416 417 3.119424 GCTGACCGCTACTCCTTATATCC 60.119 52.174 0.00 0.00 35.14 2.59
417 418 4.099380 GCTGACCGCTACTCCTTATATC 57.901 50.000 0.00 0.00 35.14 1.63
430 431 2.328099 CCAAACCTGAGCTGACCGC 61.328 63.158 0.00 0.00 39.57 5.68
431 432 1.672356 CCCAAACCTGAGCTGACCG 60.672 63.158 0.00 0.00 0.00 4.79
432 433 1.973812 GCCCAAACCTGAGCTGACC 60.974 63.158 0.00 0.00 0.00 4.02
433 434 1.073897 AGCCCAAACCTGAGCTGAC 59.926 57.895 0.00 0.00 33.41 3.51
434 435 3.580084 AGCCCAAACCTGAGCTGA 58.420 55.556 0.00 0.00 33.41 4.26
435 436 3.677527 CAGCCCAAACCTGAGCTG 58.322 61.111 0.00 0.00 45.92 4.24
436 437 0.407139 ATTCAGCCCAAACCTGAGCT 59.593 50.000 0.00 0.00 40.16 4.09
439 440 4.219115 TGTAAAATTCAGCCCAAACCTGA 58.781 39.130 0.00 0.00 37.54 3.86
441 442 3.578282 CCTGTAAAATTCAGCCCAAACCT 59.422 43.478 0.00 0.00 0.00 3.50
442 443 3.323691 ACCTGTAAAATTCAGCCCAAACC 59.676 43.478 0.00 0.00 0.00 3.27
443 444 4.556233 GACCTGTAAAATTCAGCCCAAAC 58.444 43.478 0.00 0.00 0.00 2.93
444 445 3.576550 GGACCTGTAAAATTCAGCCCAAA 59.423 43.478 0.00 0.00 0.00 3.28
445 446 3.161866 GGACCTGTAAAATTCAGCCCAA 58.838 45.455 0.00 0.00 0.00 4.12
446 447 2.802719 GGACCTGTAAAATTCAGCCCA 58.197 47.619 0.00 0.00 0.00 5.36
448 449 1.743394 CCGGACCTGTAAAATTCAGCC 59.257 52.381 0.00 0.00 0.00 4.85
449 450 2.433436 ACCGGACCTGTAAAATTCAGC 58.567 47.619 9.46 0.00 0.00 4.26
450 451 3.190535 CCAACCGGACCTGTAAAATTCAG 59.809 47.826 9.46 0.00 0.00 3.02
451 452 3.150767 CCAACCGGACCTGTAAAATTCA 58.849 45.455 9.46 0.00 0.00 2.57
452 453 3.414269 TCCAACCGGACCTGTAAAATTC 58.586 45.455 9.46 0.00 35.91 2.17
453 454 3.512219 TCCAACCGGACCTGTAAAATT 57.488 42.857 9.46 0.00 35.91 1.82
456 457 2.093341 GCTATCCAACCGGACCTGTAAA 60.093 50.000 9.46 0.00 46.79 2.01
458 459 1.117150 GCTATCCAACCGGACCTGTA 58.883 55.000 9.46 0.00 46.79 2.74
460 461 1.146263 GGCTATCCAACCGGACCTG 59.854 63.158 9.46 1.64 46.79 4.00
461 462 0.694444 ATGGCTATCCAACCGGACCT 60.694 55.000 9.46 0.00 46.79 3.85
462 463 0.182775 AATGGCTATCCAACCGGACC 59.817 55.000 9.46 0.00 46.79 4.46
463 464 2.052782 AAATGGCTATCCAACCGGAC 57.947 50.000 9.46 0.00 46.79 4.79
471 472 3.689649 ACTCAACGTGAAAATGGCTATCC 59.310 43.478 0.00 0.00 0.00 2.59
472 473 4.391830 TGACTCAACGTGAAAATGGCTATC 59.608 41.667 0.00 0.00 0.00 2.08
473 474 4.154195 GTGACTCAACGTGAAAATGGCTAT 59.846 41.667 0.00 0.00 0.00 2.97
475 476 2.290641 GTGACTCAACGTGAAAATGGCT 59.709 45.455 0.00 0.00 0.00 4.75
476 477 2.604614 GGTGACTCAACGTGAAAATGGC 60.605 50.000 0.00 0.00 0.00 4.40
477 478 2.349438 CGGTGACTCAACGTGAAAATGG 60.349 50.000 8.40 0.00 39.94 3.16
478 479 2.542178 TCGGTGACTCAACGTGAAAATG 59.458 45.455 15.94 0.00 45.50 2.32
481 482 2.400399 GATCGGTGACTCAACGTGAAA 58.600 47.619 15.94 0.00 45.50 2.69
482 483 1.664874 CGATCGGTGACTCAACGTGAA 60.665 52.381 15.94 0.00 45.50 3.18
483 484 0.109919 CGATCGGTGACTCAACGTGA 60.110 55.000 15.94 0.00 45.50 4.35
486 487 0.797249 GTCCGATCGGTGACTCAACG 60.797 60.000 32.15 10.39 46.80 4.10
487 488 0.242825 TGTCCGATCGGTGACTCAAC 59.757 55.000 32.15 21.26 36.47 3.18
488 489 0.526211 CTGTCCGATCGGTGACTCAA 59.474 55.000 32.15 9.80 36.47 3.02
489 490 1.934220 GCTGTCCGATCGGTGACTCA 61.934 60.000 32.15 21.13 36.47 3.41
490 491 1.226717 GCTGTCCGATCGGTGACTC 60.227 63.158 32.15 18.21 36.47 3.36
505 506 2.915659 TATAGTCGGGCCGGGCTG 60.916 66.667 30.31 30.31 0.00 4.85
506 507 2.916181 GTATAGTCGGGCCGGGCT 60.916 66.667 28.80 22.06 0.00 5.19
508 509 3.677648 CCGTATAGTCGGGCCGGG 61.678 72.222 27.98 13.71 45.88 5.73
523 524 1.586564 GATTCTCTCACGTCCGCCG 60.587 63.158 0.00 0.00 44.03 6.46
524 525 1.022735 TAGATTCTCTCACGTCCGCC 58.977 55.000 0.00 0.00 0.00 6.13
525 526 2.290916 TGATAGATTCTCTCACGTCCGC 59.709 50.000 0.00 0.00 0.00 5.54
526 527 4.553756 TTGATAGATTCTCTCACGTCCG 57.446 45.455 1.50 0.00 0.00 4.79
534 535 7.662258 CCATCTTCATGCTTTGATAGATTCTCT 59.338 37.037 0.00 0.00 33.60 3.10
737 1426 5.306394 AGGTTTAGTTAGTTGCTTCTGGAC 58.694 41.667 0.00 0.00 0.00 4.02
1315 2103 2.588314 GCGAGGCTGCTGATCTGG 60.588 66.667 0.00 0.00 0.00 3.86
1382 2170 5.511729 GTGCGATCAACTAATAAAACAAGCC 59.488 40.000 0.00 0.00 0.00 4.35
1391 2179 2.833794 GCAGGGTGCGATCAACTAATA 58.166 47.619 0.00 0.00 31.71 0.98
1429 2223 4.356289 TGCAAATCAAATCGCAGATGATG 58.644 39.130 0.00 0.00 45.12 3.07
1459 2257 0.250467 GAGGTCTGGTTGCTGCAGAA 60.250 55.000 20.43 2.96 0.00 3.02
1498 2302 3.197766 ACGACAGAATTCTAAGGCCATCA 59.802 43.478 7.86 0.00 0.00 3.07
1507 2320 6.849502 ACTTACATTCGACGACAGAATTCTA 58.150 36.000 7.86 0.00 36.30 2.10
1519 2332 4.030134 AGGATCACGACTTACATTCGAC 57.970 45.455 0.00 0.00 39.83 4.20
1567 2383 1.154782 CGATCGCATGAATTCGCCG 60.155 57.895 0.26 3.61 0.00 6.46
1609 2431 6.540189 CACGTTCTCCAGATATTCATCCTTTT 59.460 38.462 0.00 0.00 0.00 2.27
2046 2874 3.790437 CTCCCGCTCCACCTGCAT 61.790 66.667 0.00 0.00 0.00 3.96
2228 3056 2.032681 GCGGTGGAAACCTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
2267 3107 7.765307 TGAAATCAAGAATTAGGAATGCACTC 58.235 34.615 0.00 0.00 0.00 3.51
2497 3600 8.081633 TGTGAACTATTTTGTTGGATTTGCTAG 58.918 33.333 0.00 0.00 0.00 3.42
2726 4304 5.690464 AGAGCCAGATGAGAATAACAACT 57.310 39.130 0.00 0.00 0.00 3.16
2727 4305 5.448360 GCAAGAGCCAGATGAGAATAACAAC 60.448 44.000 0.00 0.00 33.58 3.32
2792 5451 1.164411 CGCCAAGCTGTGACCATAAA 58.836 50.000 0.00 0.00 0.00 1.40
2793 5452 0.323302 TCGCCAAGCTGTGACCATAA 59.677 50.000 0.00 0.00 0.00 1.90
2794 5453 0.541392 ATCGCCAAGCTGTGACCATA 59.459 50.000 0.00 0.00 0.00 2.74
2821 5480 6.992063 AAGATGATAAAATGTCGCTGTTCT 57.008 33.333 0.00 0.00 0.00 3.01
2892 5551 9.950680 CTTGTTAGCATCTTTAGAAAAGACAAA 57.049 29.630 4.32 0.00 0.00 2.83
2893 5552 9.120538 ACTTGTTAGCATCTTTAGAAAAGACAA 57.879 29.630 4.32 3.87 0.00 3.18
2894 5553 8.559536 CACTTGTTAGCATCTTTAGAAAAGACA 58.440 33.333 4.32 0.00 0.00 3.41
2895 5554 8.774586 TCACTTGTTAGCATCTTTAGAAAAGAC 58.225 33.333 4.32 0.00 0.00 3.01
2896 5555 8.774586 GTCACTTGTTAGCATCTTTAGAAAAGA 58.225 33.333 4.68 4.68 0.00 2.52
2897 5556 8.778358 AGTCACTTGTTAGCATCTTTAGAAAAG 58.222 33.333 0.00 0.00 0.00 2.27
2898 5557 8.677148 AGTCACTTGTTAGCATCTTTAGAAAA 57.323 30.769 0.00 0.00 0.00 2.29
2899 5558 9.204570 GTAGTCACTTGTTAGCATCTTTAGAAA 57.795 33.333 0.00 0.00 0.00 2.52
2900 5559 8.364894 TGTAGTCACTTGTTAGCATCTTTAGAA 58.635 33.333 0.00 0.00 0.00 2.10
2901 5560 7.892609 TGTAGTCACTTGTTAGCATCTTTAGA 58.107 34.615 0.00 0.00 0.00 2.10
2902 5561 8.709386 ATGTAGTCACTTGTTAGCATCTTTAG 57.291 34.615 0.00 0.00 0.00 1.85
2903 5562 9.582431 GTATGTAGTCACTTGTTAGCATCTTTA 57.418 33.333 0.00 0.00 0.00 1.85
2904 5563 7.275779 CGTATGTAGTCACTTGTTAGCATCTTT 59.724 37.037 0.00 0.00 0.00 2.52
2905 5564 6.752351 CGTATGTAGTCACTTGTTAGCATCTT 59.248 38.462 0.00 0.00 0.00 2.40
2906 5565 6.095021 TCGTATGTAGTCACTTGTTAGCATCT 59.905 38.462 0.00 0.00 0.00 2.90
2907 5566 6.263344 TCGTATGTAGTCACTTGTTAGCATC 58.737 40.000 0.00 0.00 0.00 3.91
2908 5567 6.203808 TCGTATGTAGTCACTTGTTAGCAT 57.796 37.500 0.00 0.00 0.00 3.79
2909 5568 5.632244 TCGTATGTAGTCACTTGTTAGCA 57.368 39.130 0.00 0.00 0.00 3.49
2910 5569 5.004535 GCTTCGTATGTAGTCACTTGTTAGC 59.995 44.000 0.00 0.00 0.00 3.09
2911 5570 6.090783 TGCTTCGTATGTAGTCACTTGTTAG 58.909 40.000 0.00 0.00 0.00 2.34
2912 5571 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
2913 5572 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2914 5573 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
2915 5574 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
2916 5575 8.542497 TTATTTTGCTTCGTATGTAGTCACTT 57.458 30.769 0.00 0.00 0.00 3.16
2917 5576 7.817962 ACTTATTTTGCTTCGTATGTAGTCACT 59.182 33.333 0.00 0.00 0.00 3.41
2918 5577 7.898309 CACTTATTTTGCTTCGTATGTAGTCAC 59.102 37.037 0.00 0.00 0.00 3.67
2919 5578 7.815549 TCACTTATTTTGCTTCGTATGTAGTCA 59.184 33.333 0.00 0.00 0.00 3.41
2920 5579 8.181487 TCACTTATTTTGCTTCGTATGTAGTC 57.819 34.615 0.00 0.00 0.00 2.59
2921 5580 8.542497 TTCACTTATTTTGCTTCGTATGTAGT 57.458 30.769 0.00 0.00 0.00 2.73
2922 5581 9.638300 GATTCACTTATTTTGCTTCGTATGTAG 57.362 33.333 0.00 0.00 0.00 2.74
2923 5582 9.378551 AGATTCACTTATTTTGCTTCGTATGTA 57.621 29.630 0.00 0.00 0.00 2.29
2924 5583 8.268850 AGATTCACTTATTTTGCTTCGTATGT 57.731 30.769 0.00 0.00 0.00 2.29
2925 5584 9.638300 GTAGATTCACTTATTTTGCTTCGTATG 57.362 33.333 0.00 0.00 0.00 2.39
2926 5585 9.378551 TGTAGATTCACTTATTTTGCTTCGTAT 57.621 29.630 0.00 0.00 0.00 3.06
2927 5586 8.653338 GTGTAGATTCACTTATTTTGCTTCGTA 58.347 33.333 0.00 0.00 35.68 3.43
2928 5587 7.387948 AGTGTAGATTCACTTATTTTGCTTCGT 59.612 33.333 0.00 0.00 44.92 3.85
2929 5588 7.743104 AGTGTAGATTCACTTATTTTGCTTCG 58.257 34.615 0.00 0.00 44.92 3.79
2930 5589 8.940952 AGAGTGTAGATTCACTTATTTTGCTTC 58.059 33.333 0.98 0.00 46.81 3.86
2931 5590 8.854614 AGAGTGTAGATTCACTTATTTTGCTT 57.145 30.769 0.98 0.00 46.81 3.91
2932 5591 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
3002 5661 9.855021 CGTCCATTCCTAAATATTTGTCTTTTT 57.145 29.630 11.05 0.00 0.00 1.94
3003 5662 8.466798 CCGTCCATTCCTAAATATTTGTCTTTT 58.533 33.333 11.05 0.00 0.00 2.27
3004 5663 7.832187 TCCGTCCATTCCTAAATATTTGTCTTT 59.168 33.333 11.05 0.00 0.00 2.52
3005 5664 7.343357 TCCGTCCATTCCTAAATATTTGTCTT 58.657 34.615 11.05 0.00 0.00 3.01
3006 5665 6.895782 TCCGTCCATTCCTAAATATTTGTCT 58.104 36.000 11.05 0.00 0.00 3.41
3007 5666 6.766467 ACTCCGTCCATTCCTAAATATTTGTC 59.234 38.462 11.05 0.00 0.00 3.18
3008 5667 6.659824 ACTCCGTCCATTCCTAAATATTTGT 58.340 36.000 11.05 0.00 0.00 2.83
3009 5668 7.387948 CCTACTCCGTCCATTCCTAAATATTTG 59.612 40.741 11.05 1.40 0.00 2.32
3010 5669 7.072076 ACCTACTCCGTCCATTCCTAAATATTT 59.928 37.037 5.89 5.89 0.00 1.40
3011 5670 6.557633 ACCTACTCCGTCCATTCCTAAATATT 59.442 38.462 0.00 0.00 0.00 1.28
3012 5671 6.082707 ACCTACTCCGTCCATTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
3013 5672 5.461327 ACCTACTCCGTCCATTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
3014 5673 4.296056 ACCTACTCCGTCCATTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
3015 5674 3.716431 ACCTACTCCGTCCATTCCTAAA 58.284 45.455 0.00 0.00 0.00 1.85
3016 5675 3.393426 ACCTACTCCGTCCATTCCTAA 57.607 47.619 0.00 0.00 0.00 2.69
3017 5676 3.028850 CAACCTACTCCGTCCATTCCTA 58.971 50.000 0.00 0.00 0.00 2.94
3018 5677 1.831736 CAACCTACTCCGTCCATTCCT 59.168 52.381 0.00 0.00 0.00 3.36
3019 5678 1.829222 TCAACCTACTCCGTCCATTCC 59.171 52.381 0.00 0.00 0.00 3.01
3020 5679 3.604875 TTCAACCTACTCCGTCCATTC 57.395 47.619 0.00 0.00 0.00 2.67
3021 5680 3.071892 TGTTTCAACCTACTCCGTCCATT 59.928 43.478 0.00 0.00 0.00 3.16
3022 5681 2.635915 TGTTTCAACCTACTCCGTCCAT 59.364 45.455 0.00 0.00 0.00 3.41
3023 5682 2.036733 CTGTTTCAACCTACTCCGTCCA 59.963 50.000 0.00 0.00 0.00 4.02
3024 5683 2.685100 CTGTTTCAACCTACTCCGTCC 58.315 52.381 0.00 0.00 0.00 4.79
3025 5684 2.067013 GCTGTTTCAACCTACTCCGTC 58.933 52.381 0.00 0.00 0.00 4.79
3026 5685 1.414919 TGCTGTTTCAACCTACTCCGT 59.585 47.619 0.00 0.00 0.00 4.69
3027 5686 2.163818 TGCTGTTTCAACCTACTCCG 57.836 50.000 0.00 0.00 0.00 4.63
3028 5687 6.555315 CATAATTGCTGTTTCAACCTACTCC 58.445 40.000 0.00 0.00 0.00 3.85
3029 5688 6.030228 GCATAATTGCTGTTTCAACCTACTC 58.970 40.000 0.00 0.00 45.77 2.59
3030 5689 5.954335 GCATAATTGCTGTTTCAACCTACT 58.046 37.500 0.00 0.00 45.77 2.57
3113 5776 7.360575 ACTTATTCGTTTGGAGTTCACATAC 57.639 36.000 0.00 0.00 0.00 2.39
3168 5832 8.362639 GGATGTTATGGAATAATGCATCAACTT 58.637 33.333 0.00 0.00 40.91 2.66
3234 5898 4.561326 CGTGAATTCTCCCCATTTTGCTTT 60.561 41.667 7.05 0.00 0.00 3.51
3283 5947 8.083828 ACAGGGAGAAACTGGCATATATATAG 57.916 38.462 0.00 0.00 40.23 1.31
3359 6844 1.064017 AGACTTTGCACTTGTGGGGAA 60.064 47.619 2.81 0.00 0.00 3.97
3436 6940 4.380531 GGAGACTGCCGATATTGAATTCA 58.619 43.478 3.38 3.38 0.00 2.57
3538 7053 2.943978 CGTTCGCCTCCCTCAGGTT 61.944 63.158 0.00 0.00 45.61 3.50
3697 7212 0.754217 CTGCCAACCCCATCCTGATG 60.754 60.000 0.00 0.00 38.51 3.07
3819 7337 3.346631 GAAGAGCGCGGGGTCGTAA 62.347 63.158 23.48 0.00 45.26 3.18
4063 7587 0.976641 TTCTCCAGATGCTCGTGGTT 59.023 50.000 0.00 0.00 35.14 3.67
4194 7718 4.988598 CGGGCGTGCAAGTCCACT 62.989 66.667 23.17 0.00 35.10 4.00
4262 7786 3.672295 CTCTTGGACCTCGCCAGCC 62.672 68.421 0.00 0.00 39.52 4.85
4353 7877 2.926242 TGGAACCCGTCTGTCCCC 60.926 66.667 0.00 0.00 0.00 4.81
4403 7927 2.289945 ACTGATCAGGAGCTTGTCAACC 60.290 50.000 26.08 0.00 0.00 3.77
4528 8052 2.993471 GCACCCCTTCAACATGCCG 61.993 63.158 0.00 0.00 0.00 5.69
4529 8053 2.973082 GCACCCCTTCAACATGCC 59.027 61.111 0.00 0.00 0.00 4.40
4621 8240 5.656480 TCTACTTTTGAACTTGGTTTTGCC 58.344 37.500 0.00 0.00 37.90 4.52
4652 8271 9.260002 CTTTGTTGTTGCCTAATGTCTTTTATT 57.740 29.630 0.00 0.00 0.00 1.40
4653 8272 8.421002 ACTTTGTTGTTGCCTAATGTCTTTTAT 58.579 29.630 0.00 0.00 0.00 1.40
4689 8308 9.924650 GAGTAATATATTCAGGTGTCCGTTATT 57.075 33.333 0.00 0.00 0.00 1.40
4690 8309 8.529476 GGAGTAATATATTCAGGTGTCCGTTAT 58.471 37.037 0.00 0.00 0.00 1.89
4691 8310 7.039504 GGGAGTAATATATTCAGGTGTCCGTTA 60.040 40.741 0.00 0.00 0.00 3.18
4719 8338 6.795399 AGCTACGACATTTATTTTGGATTGG 58.205 36.000 0.00 0.00 0.00 3.16
4739 8358 9.436957 CTCTGAATTAACCTTAGTTCAAAGCTA 57.563 33.333 4.99 0.00 38.40 3.32
4766 8385 9.959749 GATCCACAATTGTAAGTAAAACTTTCA 57.040 29.630 11.53 0.00 39.51 2.69
4780 8407 6.962182 TCCTCTAGATTTGATCCACAATTGT 58.038 36.000 4.92 4.92 38.36 2.71
4782 8409 7.346698 TCTCTCCTCTAGATTTGATCCACAATT 59.653 37.037 0.00 0.00 38.36 2.32
4797 8424 8.153221 TCTTGGTACCTATATCTCTCCTCTAG 57.847 42.308 14.36 0.00 0.00 2.43
4824 8451 0.390735 ACGTTAAGGGACGATGCCAC 60.391 55.000 4.29 0.00 45.47 5.01
4850 8477 9.206870 CTTGCTTTGGCTTCATAGATTTAAAAA 57.793 29.630 0.00 0.00 39.59 1.94
4851 8478 8.584157 TCTTGCTTTGGCTTCATAGATTTAAAA 58.416 29.630 0.00 0.00 39.59 1.52
4874 8501 4.527509 TCTCTTCAGAATCACGCTTCTT 57.472 40.909 0.00 0.00 33.18 2.52
4886 8513 5.551305 TTGACAAGAACCATCTCTTCAGA 57.449 39.130 0.00 0.00 33.25 3.27
4904 8531 2.095567 ACGCAATGCACTCATCTTTGAC 60.096 45.455 5.91 0.00 31.27 3.18
4909 8536 1.812235 TTCACGCAATGCACTCATCT 58.188 45.000 5.91 0.00 31.27 2.90
4925 8552 8.879227 ACCATCCTTTGAAAAATTTAGGATTCA 58.121 29.630 14.29 7.59 41.73 2.57
4932 8559 6.588373 GCGCTTACCATCCTTTGAAAAATTTA 59.412 34.615 0.00 0.00 0.00 1.40
4952 8579 0.322975 AGAGTCCATCTGTTGCGCTT 59.677 50.000 9.73 0.00 36.69 4.68
4956 8583 2.760092 AGAGAGAGAGTCCATCTGTTGC 59.240 50.000 0.00 0.00 38.84 4.17
4962 8589 4.101585 TGAGAGAGAGAGAGAGAGTCCATC 59.898 50.000 0.00 0.00 0.00 3.51
4978 8605 2.867287 ACTCACGCATGATGAGAGAG 57.133 50.000 25.85 18.52 45.46 3.20
4980 8607 5.735324 CATTTTACTCACGCATGATGAGAG 58.265 41.667 25.85 18.10 45.46 3.20
4981 8608 4.034394 GCATTTTACTCACGCATGATGAGA 59.966 41.667 25.85 12.24 45.46 3.27
4984 8611 3.787634 GTGCATTTTACTCACGCATGATG 59.212 43.478 0.00 0.00 34.66 3.07
4985 8612 3.439825 TGTGCATTTTACTCACGCATGAT 59.560 39.130 0.00 0.00 34.66 2.45
4986 8613 2.810852 TGTGCATTTTACTCACGCATGA 59.189 40.909 0.00 0.00 34.66 3.07
4987 8614 3.120234 TCTGTGCATTTTACTCACGCATG 60.120 43.478 0.00 0.00 34.66 4.06
4988 8615 3.073678 TCTGTGCATTTTACTCACGCAT 58.926 40.909 0.00 0.00 34.66 4.73
4989 8616 2.488952 TCTGTGCATTTTACTCACGCA 58.511 42.857 0.00 0.00 33.69 5.24
4990 8617 3.226347 GTTCTGTGCATTTTACTCACGC 58.774 45.455 0.00 0.00 33.69 5.34
4992 8619 4.537015 GTGGTTCTGTGCATTTTACTCAC 58.463 43.478 0.00 0.00 0.00 3.51
4993 8620 3.568007 GGTGGTTCTGTGCATTTTACTCA 59.432 43.478 0.00 0.00 0.00 3.41
5036 8669 8.145122 TCATGTTTTGTAAAGGGATGGTTTTAC 58.855 33.333 0.00 1.32 39.21 2.01
5047 8680 7.125113 GTGCAAAATGTCATGTTTTGTAAAGG 58.875 34.615 16.75 0.00 44.40 3.11
5072 8705 2.157668 CACTGTCAATTCTTCGGTTCGG 59.842 50.000 0.00 0.00 0.00 4.30
5128 8761 3.624861 CCCAATCAACTAGTGACATCAGC 59.375 47.826 0.00 0.00 39.72 4.26
5129 8762 3.624861 GCCCAATCAACTAGTGACATCAG 59.375 47.826 0.00 0.00 39.72 2.90
5132 8765 2.357154 GGGCCCAATCAACTAGTGACAT 60.357 50.000 19.95 0.00 39.72 3.06
5133 8766 1.004277 GGGCCCAATCAACTAGTGACA 59.996 52.381 19.95 0.00 39.72 3.58
5134 8767 1.004277 TGGGCCCAATCAACTAGTGAC 59.996 52.381 26.33 0.00 39.72 3.67
5141 8774 1.228862 ACAGGTGGGCCCAATCAAC 60.229 57.895 30.64 14.31 34.66 3.18
5144 8777 2.438434 CGACAGGTGGGCCCAATC 60.438 66.667 30.64 22.18 34.66 2.67
5166 8799 7.913674 TGTGTAATTTTCTTTTTGCCAACTT 57.086 28.000 0.00 0.00 0.00 2.66
5229 8963 3.803162 GAGGCAAGGGAGGAGGGC 61.803 72.222 0.00 0.00 0.00 5.19
5230 8964 3.474570 CGAGGCAAGGGAGGAGGG 61.475 72.222 0.00 0.00 0.00 4.30
5278 9012 3.019003 GCTAGCTCGGACCAGGCAA 62.019 63.158 7.70 0.00 0.00 4.52
5288 9022 2.409651 GGTGGACTCGCTAGCTCG 59.590 66.667 13.93 5.86 0.00 5.03
5293 9027 2.282674 ACACCGGTGGACTCGCTA 60.283 61.111 36.47 0.00 34.19 4.26
5316 9050 2.105128 GGAGGTGCGAGATCCACG 59.895 66.667 5.69 5.69 34.08 4.94
5334 9068 0.926155 CGATCATCTGCCACGAACTG 59.074 55.000 0.00 0.00 0.00 3.16
5370 9104 0.602905 GTTAGGTGCACGAGCTTGGT 60.603 55.000 11.45 0.00 42.74 3.67
5371 9105 1.626654 CGTTAGGTGCACGAGCTTGG 61.627 60.000 11.45 0.00 40.20 3.61
5373 9107 1.663739 TCGTTAGGTGCACGAGCTT 59.336 52.632 11.45 0.00 41.66 3.74
5387 9121 2.286833 CGAACATGAACAACACCTCGTT 59.713 45.455 0.00 0.00 38.83 3.85
5424 9158 2.259818 CTGACAGACCGCGCTTCT 59.740 61.111 5.56 3.89 0.00 2.85
5438 9172 1.595882 GCTGAAGGAGAGCTGCTGA 59.404 57.895 7.01 0.00 33.37 4.26
5439 9173 1.810441 CGCTGAAGGAGAGCTGCTG 60.810 63.158 7.01 0.00 34.03 4.41
5440 9174 1.981312 TCGCTGAAGGAGAGCTGCT 60.981 57.895 0.00 0.00 34.03 4.24
5441 9175 1.809209 GTCGCTGAAGGAGAGCTGC 60.809 63.158 0.00 0.00 34.03 5.25
5442 9176 0.175302 ATGTCGCTGAAGGAGAGCTG 59.825 55.000 0.00 0.00 34.03 4.24
5443 9177 0.459489 GATGTCGCTGAAGGAGAGCT 59.541 55.000 0.00 0.00 34.03 4.09
5446 9180 1.133216 CGAAGATGTCGCTGAAGGAGA 59.867 52.381 0.00 0.00 44.14 3.71
5447 9181 1.554392 CGAAGATGTCGCTGAAGGAG 58.446 55.000 0.00 0.00 44.14 3.69
5448 9182 3.721625 CGAAGATGTCGCTGAAGGA 57.278 52.632 0.00 0.00 44.14 3.36
5462 9196 2.815647 GGCGCCCTTCTGACGAAG 60.816 66.667 18.11 0.00 45.00 3.79
5463 9197 3.171828 TTGGCGCCCTTCTGACGAA 62.172 57.895 26.77 4.72 0.00 3.85
5464 9198 3.621805 TTGGCGCCCTTCTGACGA 61.622 61.111 26.77 0.00 0.00 4.20
5466 9200 2.281484 TGTTGGCGCCCTTCTGAC 60.281 61.111 26.77 13.02 0.00 3.51
5467 9201 2.032528 CTGTTGGCGCCCTTCTGA 59.967 61.111 26.77 0.00 0.00 3.27
5468 9202 1.600636 TTCTGTTGGCGCCCTTCTG 60.601 57.895 26.77 17.10 0.00 3.02
5469 9203 1.600916 GTTCTGTTGGCGCCCTTCT 60.601 57.895 26.77 0.00 0.00 2.85
5470 9204 1.452145 TTGTTCTGTTGGCGCCCTTC 61.452 55.000 26.77 14.69 0.00 3.46
5472 9206 1.898574 CTTGTTCTGTTGGCGCCCT 60.899 57.895 26.77 0.00 0.00 5.19
5474 9208 1.896660 TCCTTGTTCTGTTGGCGCC 60.897 57.895 22.73 22.73 0.00 6.53
5476 9210 1.569493 CGTCCTTGTTCTGTTGGCG 59.431 57.895 0.00 0.00 0.00 5.69
5479 9213 0.588252 CCTGCGTCCTTGTTCTGTTG 59.412 55.000 0.00 0.00 0.00 3.33
5482 9216 0.868406 GTTCCTGCGTCCTTGTTCTG 59.132 55.000 0.00 0.00 0.00 3.02
5484 9218 0.878961 ACGTTCCTGCGTCCTTGTTC 60.879 55.000 0.00 0.00 41.71 3.18
5485 9219 1.145377 ACGTTCCTGCGTCCTTGTT 59.855 52.632 0.00 0.00 41.71 2.83
5493 9227 1.347817 GCTCTTCAGACGTTCCTGCG 61.348 60.000 0.00 0.00 34.28 5.18
5495 9229 1.347817 GCGCTCTTCAGACGTTCCTG 61.348 60.000 0.00 0.00 35.55 3.86
5496 9230 1.080434 GCGCTCTTCAGACGTTCCT 60.080 57.895 0.00 0.00 0.00 3.36
5499 9233 3.106407 GCGCGCTCTTCAGACGTT 61.106 61.111 26.67 0.00 0.00 3.99
5500 9234 3.955234 GAGCGCGCTCTTCAGACGT 62.955 63.158 44.82 17.93 39.80 4.34
5501 9235 3.243892 GAGCGCGCTCTTCAGACG 61.244 66.667 44.82 0.00 39.80 4.18
5529 9263 4.440127 GCGCAAATGGGCCTGGTG 62.440 66.667 11.02 0.32 46.68 4.17
5537 9271 1.451651 GACGTTTCTTTGCGCAAATGG 59.548 47.619 33.64 23.39 0.00 3.16
5539 9273 1.601914 GGGACGTTTCTTTGCGCAAAT 60.602 47.619 33.64 19.30 0.00 2.32
5540 9274 0.248702 GGGACGTTTCTTTGCGCAAA 60.249 50.000 31.75 31.75 0.00 3.68
5543 9277 2.254350 GGGGACGTTTCTTTGCGC 59.746 61.111 0.00 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.