Multiple sequence alignment - TraesCS3A01G208100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G208100 chr3A 100.000 7330 0 0 1 7330 366879834 366887163 0.000000e+00 13537.0
1 TraesCS3A01G208100 chr3A 94.304 913 39 4 1 902 60827575 60828485 0.000000e+00 1386.0
2 TraesCS3A01G208100 chr3A 92.117 926 48 4 1 902 740090225 740091149 0.000000e+00 1282.0
3 TraesCS3A01G208100 chr3A 98.548 482 7 0 6667 7148 632610135 632609654 0.000000e+00 852.0
4 TraesCS3A01G208100 chr3A 86.420 81 10 1 5368 5447 264954755 264954675 3.640000e-13 87.9
5 TraesCS3A01G208100 chr3D 94.513 1859 37 18 1921 3723 281002891 281004740 0.000000e+00 2808.0
6 TraesCS3A01G208100 chr3D 91.038 1618 98 19 3735 5332 119401286 119399696 0.000000e+00 2141.0
7 TraesCS3A01G208100 chr3D 93.347 1443 80 1 3942 5368 383166917 383168359 0.000000e+00 2119.0
8 TraesCS3A01G208100 chr3D 95.530 1141 27 2 5528 6667 281004992 281006109 0.000000e+00 1803.0
9 TraesCS3A01G208100 chr3D 97.921 962 15 3 972 1929 281001774 281002734 0.000000e+00 1661.0
10 TraesCS3A01G208100 chr3D 88.060 938 73 9 1 904 448310657 448311589 0.000000e+00 1075.0
11 TraesCS3A01G208100 chr3D 90.228 788 48 5 3758 4516 410316294 410315507 0.000000e+00 1002.0
12 TraesCS3A01G208100 chr3D 96.685 181 4 1 7152 7330 281006105 281006285 4.300000e-77 300.0
13 TraesCS3A01G208100 chr3D 93.413 167 8 2 5368 5534 281004726 281004889 2.040000e-60 244.0
14 TraesCS3A01G208100 chr3D 100.000 71 0 0 903 973 281001672 281001742 1.660000e-26 132.0
15 TraesCS3A01G208100 chr3D 89.796 49 4 1 3500 3548 400683939 400683986 2.210000e-05 62.1
16 TraesCS3A01G208100 chr3D 94.595 37 2 0 3410 3446 424005984 424006020 2.860000e-04 58.4
17 TraesCS3A01G208100 chr2D 93.349 1669 80 10 3729 5368 639930925 639929259 0.000000e+00 2438.0
18 TraesCS3A01G208100 chr2D 88.444 874 74 12 1 852 640885578 640886446 0.000000e+00 1029.0
19 TraesCS3A01G208100 chr2D 93.069 606 22 6 4 594 63681896 63681296 0.000000e+00 869.0
20 TraesCS3A01G208100 chr2D 97.059 102 3 0 3623 3724 428554879 428554980 9.780000e-39 172.0
21 TraesCS3A01G208100 chr2D 95.349 43 2 0 3499 3541 36748673 36748715 1.320000e-07 69.4
22 TraesCS3A01G208100 chr1D 93.305 1658 89 5 3729 5368 111815922 111814269 0.000000e+00 2427.0
23 TraesCS3A01G208100 chr1D 92.015 1653 100 3 3729 5368 11788660 11787027 0.000000e+00 2292.0
24 TraesCS3A01G208100 chr1D 90.607 1565 92 13 3821 5368 19053495 19051969 0.000000e+00 2025.0
25 TraesCS3A01G208100 chr1D 83.448 725 100 13 195 903 422272100 422272820 0.000000e+00 656.0
26 TraesCS3A01G208100 chr1D 87.729 546 36 11 3738 4253 21420185 21420729 6.290000e-170 608.0
27 TraesCS3A01G208100 chr1D 89.494 257 21 5 1 255 422271856 422272108 3.300000e-83 320.0
28 TraesCS3A01G208100 chr1D 77.202 193 35 4 724 907 35789827 35789635 3.620000e-18 104.0
29 TraesCS3A01G208100 chr1D 85.000 80 12 0 5368 5447 135679950 135679871 1.690000e-11 82.4
30 TraesCS3A01G208100 chr1D 93.182 44 3 0 3499 3542 346659705 346659748 1.710000e-06 65.8
31 TraesCS3A01G208100 chr1D 92.857 42 3 0 3500 3541 307830191 307830150 2.210000e-05 62.1
32 TraesCS3A01G208100 chr3B 92.958 1704 40 19 1741 3409 369103848 369105506 0.000000e+00 2409.0
33 TraesCS3A01G208100 chr3B 92.335 1670 94 12 3730 5368 141743334 141741668 0.000000e+00 2344.0
34 TraesCS3A01G208100 chr3B 92.644 1645 89 5 3753 5368 561033077 561034718 0.000000e+00 2338.0
35 TraesCS3A01G208100 chr3B 92.053 1661 101 13 3738 5368 172967104 172965445 0.000000e+00 2307.0
36 TraesCS3A01G208100 chr3B 95.725 1310 44 6 5368 6667 369105760 369107067 0.000000e+00 2098.0
37 TraesCS3A01G208100 chr3B 92.119 774 36 11 972 1731 369102701 369103463 0.000000e+00 1068.0
38 TraesCS3A01G208100 chr3B 81.681 928 131 29 1 902 8359150 8358236 0.000000e+00 736.0
39 TraesCS3A01G208100 chr3B 95.896 268 10 1 3456 3723 369105508 369105774 4.060000e-117 433.0
40 TraesCS3A01G208100 chr3B 96.648 179 6 0 7152 7330 369107063 369107241 1.550000e-76 298.0
41 TraesCS3A01G208100 chr3B 100.000 71 0 0 903 973 369102595 369102665 1.660000e-26 132.0
42 TraesCS3A01G208100 chr6B 92.400 1671 91 7 3729 5368 30289361 30291026 0.000000e+00 2350.0
43 TraesCS3A01G208100 chr6B 100.000 34 0 0 3413 3446 130830133 130830100 6.140000e-06 63.9
44 TraesCS3A01G208100 chr4B 92.423 1663 95 4 3735 5368 250760680 250759020 0.000000e+00 2344.0
45 TraesCS3A01G208100 chr4B 82.845 921 103 22 1 903 82274685 82275568 0.000000e+00 774.0
46 TraesCS3A01G208100 chr4B 89.850 532 37 4 1 516 109235591 109236121 0.000000e+00 667.0
47 TraesCS3A01G208100 chr4B 96.078 102 4 0 3623 3724 446519536 446519435 4.550000e-37 167.0
48 TraesCS3A01G208100 chr4B 95.238 42 2 0 3405 3446 262709910 262709951 4.750000e-07 67.6
49 TraesCS3A01G208100 chr4B 93.023 43 3 0 3499 3541 481601328 481601286 6.140000e-06 63.9
50 TraesCS3A01G208100 chr4B 97.143 35 1 0 3413 3447 3828821 3828787 7.940000e-05 60.2
51 TraesCS3A01G208100 chr4B 92.500 40 3 0 3500 3539 204335848 204335809 2.860000e-04 58.4
52 TraesCS3A01G208100 chr5D 92.787 1636 80 11 3769 5366 500980218 500981853 0.000000e+00 2333.0
53 TraesCS3A01G208100 chr5D 91.270 1661 109 11 3729 5372 397882203 397880562 0.000000e+00 2231.0
54 TraesCS3A01G208100 chr5D 86.984 945 73 20 1 899 60521437 60522377 0.000000e+00 1018.0
55 TraesCS3A01G208100 chr5D 85.791 936 90 22 1 902 382033243 382034169 0.000000e+00 952.0
56 TraesCS3A01G208100 chr5D 82.828 693 85 22 1 672 104114737 104114058 2.280000e-164 590.0
57 TraesCS3A01G208100 chr5D 96.040 101 4 0 3624 3724 412100258 412100158 1.640000e-36 165.0
58 TraesCS3A01G208100 chr5D 100.000 34 0 0 3413 3446 34874675 34874642 6.140000e-06 63.9
59 TraesCS3A01G208100 chr5D 89.796 49 4 1 3500 3548 446918259 446918212 2.210000e-05 62.1
60 TraesCS3A01G208100 chr5D 96.970 33 0 1 3410 3441 535546971 535547003 4.000000e-03 54.7
61 TraesCS3A01G208100 chr5B 92.392 1643 103 9 3729 5355 701706463 701704827 0.000000e+00 2322.0
62 TraesCS3A01G208100 chr5B 94.813 482 24 1 6667 7148 277805453 277805933 0.000000e+00 750.0
63 TraesCS3A01G208100 chr5B 85.481 551 64 11 1 545 113329561 113329021 1.790000e-155 560.0
64 TraesCS3A01G208100 chr5B 96.040 101 4 0 3624 3724 247347986 247348086 1.640000e-36 165.0
65 TraesCS3A01G208100 chr5B 93.333 45 2 1 3403 3446 312761948 312761904 1.710000e-06 65.8
66 TraesCS3A01G208100 chr5B 100.000 35 0 0 3412 3446 414456796 414456830 1.710000e-06 65.8
67 TraesCS3A01G208100 chr5B 100.000 34 0 0 3413 3446 63846752 63846719 6.140000e-06 63.9
68 TraesCS3A01G208100 chr6D 94.749 1333 70 0 4036 5368 358214727 358216059 0.000000e+00 2074.0
69 TraesCS3A01G208100 chr6D 87.648 931 82 11 1 902 80672827 80673753 0.000000e+00 1051.0
70 TraesCS3A01G208100 chr6D 86.589 947 78 20 1 902 448956417 448957359 0.000000e+00 1000.0
71 TraesCS3A01G208100 chr6D 82.410 921 121 29 1 902 77710176 77709278 0.000000e+00 765.0
72 TraesCS3A01G208100 chr6D 87.755 49 5 1 3500 3548 237751397 237751350 1.000000e-03 56.5
73 TraesCS3A01G208100 chr5A 94.627 912 38 8 1 902 523620388 523619478 0.000000e+00 1402.0
74 TraesCS3A01G208100 chr5A 95.752 612 24 2 1 611 612761453 612760843 0.000000e+00 985.0
75 TraesCS3A01G208100 chr5A 94.606 482 23 3 6667 7147 481920367 481919888 0.000000e+00 743.0
76 TraesCS3A01G208100 chr7A 93.963 911 41 6 1 902 665977842 665976937 0.000000e+00 1365.0
77 TraesCS3A01G208100 chr7A 92.125 927 45 6 1 902 94445473 94446396 0.000000e+00 1282.0
78 TraesCS3A01G208100 chr7A 94.595 481 25 1 6667 7147 696779264 696779743 0.000000e+00 743.0
79 TraesCS3A01G208100 chr7A 87.179 78 9 1 5368 5444 696806174 696806251 3.640000e-13 87.9
80 TraesCS3A01G208100 chr7A 100.000 33 0 0 872 904 666515257 666515289 2.210000e-05 62.1
81 TraesCS3A01G208100 chr4A 93.833 908 43 5 1 897 534199262 534200167 0.000000e+00 1354.0
82 TraesCS3A01G208100 chr4A 90.566 53 4 1 3500 3552 12401674 12401725 1.320000e-07 69.4
83 TraesCS3A01G208100 chr2A 93.304 911 49 8 1 902 690342358 690341451 0.000000e+00 1334.0
84 TraesCS3A01G208100 chr2A 92.986 499 31 4 6661 7159 766166286 766165792 0.000000e+00 725.0
85 TraesCS3A01G208100 chr2A 95.192 104 5 0 3621 3724 48408497 48408600 1.640000e-36 165.0
86 TraesCS3A01G208100 chr2A 96.040 101 4 0 3624 3724 758586738 758586638 1.640000e-36 165.0
87 TraesCS3A01G208100 chr1A 91.694 927 52 10 1 903 49344978 49345903 0.000000e+00 1262.0
88 TraesCS3A01G208100 chr1A 88.295 880 70 7 1 852 72585019 72584145 0.000000e+00 1024.0
89 TraesCS3A01G208100 chr1A 94.398 482 27 0 6667 7148 550705159 550704678 0.000000e+00 741.0
90 TraesCS3A01G208100 chr1A 94.387 481 26 1 6667 7147 32475866 32475387 0.000000e+00 737.0
91 TraesCS3A01G208100 chr1A 84.091 88 12 2 5362 5447 121462524 121462437 4.710000e-12 84.2
92 TraesCS3A01G208100 chr1A 100.000 34 0 0 3413 3446 572633145 572633112 6.140000e-06 63.9
93 TraesCS3A01G208100 chr1A 75.342 146 27 5 767 903 320288364 320288219 2.210000e-05 62.1
94 TraesCS3A01G208100 chr1A 97.222 36 1 0 872 907 585389871 585389836 2.210000e-05 62.1
95 TraesCS3A01G208100 chr1A 100.000 31 0 0 872 902 320289753 320289783 2.860000e-04 58.4
96 TraesCS3A01G208100 chr1A 100.000 31 0 0 872 902 562115851 562115881 2.860000e-04 58.4
97 TraesCS3A01G208100 chr7D 89.192 879 64 13 1 852 501825860 501826734 0.000000e+00 1068.0
98 TraesCS3A01G208100 chr7D 87.134 956 72 20 1 909 49877557 49876606 0.000000e+00 1037.0
99 TraesCS3A01G208100 chr7D 88.312 77 9 0 5368 5444 201879587 201879511 7.830000e-15 93.5
100 TraesCS3A01G208100 chr7D 87.179 78 9 1 5368 5444 91854906 91854983 3.640000e-13 87.9
101 TraesCS3A01G208100 chr7B 87.540 931 82 14 1 902 415417253 415416328 0.000000e+00 1046.0
102 TraesCS3A01G208100 chr7B 84.047 934 105 21 4 902 144749370 144748446 0.000000e+00 859.0
103 TraesCS3A01G208100 chr7B 93.802 484 29 1 6665 7148 39917371 39916889 0.000000e+00 726.0
104 TraesCS3A01G208100 chr7B 91.837 49 3 1 3500 3548 529956295 529956342 4.750000e-07 67.6
105 TraesCS3A01G208100 chr7B 97.368 38 1 0 3409 3446 708003558 708003521 1.710000e-06 65.8
106 TraesCS3A01G208100 chr7B 97.368 38 1 0 3409 3446 708032190 708032153 1.710000e-06 65.8
107 TraesCS3A01G208100 chr6A 89.915 823 49 4 113 902 36427231 36428052 0.000000e+00 1029.0
108 TraesCS3A01G208100 chr6A 95.010 481 23 1 6667 7147 60530915 60530436 0.000000e+00 754.0
109 TraesCS3A01G208100 chr6A 82.222 135 19 4 767 896 438589713 438589579 2.160000e-20 111.0
110 TraesCS3A01G208100 chr6A 92.857 42 3 0 3500 3541 158049181 158049140 2.210000e-05 62.1
111 TraesCS3A01G208100 chr4D 86.114 893 61 24 1 852 30904156 30903286 0.000000e+00 904.0
112 TraesCS3A01G208100 chr4D 86.158 773 74 16 161 902 496006303 496005533 0.000000e+00 804.0
113 TraesCS3A01G208100 chr4D 100.000 83 0 0 1 83 496006435 496006353 3.540000e-33 154.0
114 TraesCS3A01G208100 chr4D 90.566 53 4 1 3500 3552 455531416 455531467 1.320000e-07 69.4
115 TraesCS3A01G208100 chr4D 100.000 37 0 0 127 163 496006351 496006315 1.320000e-07 69.4
116 TraesCS3A01G208100 chr4D 100.000 34 0 0 3413 3446 24455801 24455834 6.140000e-06 63.9
117 TraesCS3A01G208100 chr4D 93.023 43 3 0 3499 3541 391719343 391719301 6.140000e-06 63.9
118 TraesCS3A01G208100 chr4D 97.059 34 1 0 3413 3446 224554272 224554305 2.860000e-04 58.4
119 TraesCS3A01G208100 chr4D 90.476 42 4 0 3500 3541 47984293 47984334 1.000000e-03 56.5
120 TraesCS3A01G208100 chr1B 89.631 569 32 14 3767 4310 484261590 484261024 0.000000e+00 699.0
121 TraesCS3A01G208100 chr1B 88.312 77 8 1 5368 5444 596377169 596377244 2.820000e-14 91.6
122 TraesCS3A01G208100 chrUn 91.022 323 14 2 1 308 87002049 87002371 8.790000e-114 422.0
123 TraesCS3A01G208100 chrUn 91.022 323 14 2 1 308 298336234 298336556 8.790000e-114 422.0
124 TraesCS3A01G208100 chrUn 91.022 323 14 2 1 308 298384280 298383958 8.790000e-114 422.0
125 TraesCS3A01G208100 chrUn 96.040 101 4 0 3624 3724 320881578 320881678 1.640000e-36 165.0
126 TraesCS3A01G208100 chrUn 89.796 49 4 1 3500 3548 28955432 28955479 2.210000e-05 62.1
127 TraesCS3A01G208100 chrUn 100.000 31 0 0 3497 3527 436061852 436061822 2.860000e-04 58.4
128 TraesCS3A01G208100 chrUn 100.000 31 0 0 3497 3527 454147246 454147216 2.860000e-04 58.4
129 TraesCS3A01G208100 chrUn 87.755 49 5 1 3500 3548 29029198 29029245 1.000000e-03 56.5
130 TraesCS3A01G208100 chrUn 94.118 34 2 0 3494 3527 480537694 480537727 1.300000e-02 52.8
131 TraesCS3A01G208100 chr2B 97.500 40 1 0 3502 3541 439884312 439884273 1.320000e-07 69.4
132 TraesCS3A01G208100 chr2B 97.436 39 0 1 3409 3446 264582698 264582660 1.710000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G208100 chr3A 366879834 366887163 7329 False 13537.000000 13537 100.000000 1 7330 1 chr3A.!!$F2 7329
1 TraesCS3A01G208100 chr3A 60827575 60828485 910 False 1386.000000 1386 94.304000 1 902 1 chr3A.!!$F1 901
2 TraesCS3A01G208100 chr3A 740090225 740091149 924 False 1282.000000 1282 92.117000 1 902 1 chr3A.!!$F3 901
3 TraesCS3A01G208100 chr3D 119399696 119401286 1590 True 2141.000000 2141 91.038000 3735 5332 1 chr3D.!!$R1 1597
4 TraesCS3A01G208100 chr3D 383166917 383168359 1442 False 2119.000000 2119 93.347000 3942 5368 1 chr3D.!!$F1 1426
5 TraesCS3A01G208100 chr3D 281001672 281006285 4613 False 1158.000000 2808 96.343667 903 7330 6 chr3D.!!$F5 6427
6 TraesCS3A01G208100 chr3D 448310657 448311589 932 False 1075.000000 1075 88.060000 1 904 1 chr3D.!!$F4 903
7 TraesCS3A01G208100 chr3D 410315507 410316294 787 True 1002.000000 1002 90.228000 3758 4516 1 chr3D.!!$R2 758
8 TraesCS3A01G208100 chr2D 639929259 639930925 1666 True 2438.000000 2438 93.349000 3729 5368 1 chr2D.!!$R2 1639
9 TraesCS3A01G208100 chr2D 640885578 640886446 868 False 1029.000000 1029 88.444000 1 852 1 chr2D.!!$F3 851
10 TraesCS3A01G208100 chr2D 63681296 63681896 600 True 869.000000 869 93.069000 4 594 1 chr2D.!!$R1 590
11 TraesCS3A01G208100 chr1D 111814269 111815922 1653 True 2427.000000 2427 93.305000 3729 5368 1 chr1D.!!$R4 1639
12 TraesCS3A01G208100 chr1D 11787027 11788660 1633 True 2292.000000 2292 92.015000 3729 5368 1 chr1D.!!$R1 1639
13 TraesCS3A01G208100 chr1D 19051969 19053495 1526 True 2025.000000 2025 90.607000 3821 5368 1 chr1D.!!$R2 1547
14 TraesCS3A01G208100 chr1D 21420185 21420729 544 False 608.000000 608 87.729000 3738 4253 1 chr1D.!!$F1 515
15 TraesCS3A01G208100 chr1D 422271856 422272820 964 False 488.000000 656 86.471000 1 903 2 chr1D.!!$F3 902
16 TraesCS3A01G208100 chr3B 141741668 141743334 1666 True 2344.000000 2344 92.335000 3730 5368 1 chr3B.!!$R2 1638
17 TraesCS3A01G208100 chr3B 561033077 561034718 1641 False 2338.000000 2338 92.644000 3753 5368 1 chr3B.!!$F1 1615
18 TraesCS3A01G208100 chr3B 172965445 172967104 1659 True 2307.000000 2307 92.053000 3738 5368 1 chr3B.!!$R3 1630
19 TraesCS3A01G208100 chr3B 369102595 369107241 4646 False 1073.000000 2409 95.557667 903 7330 6 chr3B.!!$F2 6427
20 TraesCS3A01G208100 chr3B 8358236 8359150 914 True 736.000000 736 81.681000 1 902 1 chr3B.!!$R1 901
21 TraesCS3A01G208100 chr6B 30289361 30291026 1665 False 2350.000000 2350 92.400000 3729 5368 1 chr6B.!!$F1 1639
22 TraesCS3A01G208100 chr4B 250759020 250760680 1660 True 2344.000000 2344 92.423000 3735 5368 1 chr4B.!!$R3 1633
23 TraesCS3A01G208100 chr4B 82274685 82275568 883 False 774.000000 774 82.845000 1 903 1 chr4B.!!$F1 902
24 TraesCS3A01G208100 chr4B 109235591 109236121 530 False 667.000000 667 89.850000 1 516 1 chr4B.!!$F2 515
25 TraesCS3A01G208100 chr5D 500980218 500981853 1635 False 2333.000000 2333 92.787000 3769 5366 1 chr5D.!!$F3 1597
26 TraesCS3A01G208100 chr5D 397880562 397882203 1641 True 2231.000000 2231 91.270000 3729 5372 1 chr5D.!!$R3 1643
27 TraesCS3A01G208100 chr5D 60521437 60522377 940 False 1018.000000 1018 86.984000 1 899 1 chr5D.!!$F1 898
28 TraesCS3A01G208100 chr5D 382033243 382034169 926 False 952.000000 952 85.791000 1 902 1 chr5D.!!$F2 901
29 TraesCS3A01G208100 chr5D 104114058 104114737 679 True 590.000000 590 82.828000 1 672 1 chr5D.!!$R2 671
30 TraesCS3A01G208100 chr5B 701704827 701706463 1636 True 2322.000000 2322 92.392000 3729 5355 1 chr5B.!!$R4 1626
31 TraesCS3A01G208100 chr5B 113329021 113329561 540 True 560.000000 560 85.481000 1 545 1 chr5B.!!$R2 544
32 TraesCS3A01G208100 chr6D 358214727 358216059 1332 False 2074.000000 2074 94.749000 4036 5368 1 chr6D.!!$F2 1332
33 TraesCS3A01G208100 chr6D 80672827 80673753 926 False 1051.000000 1051 87.648000 1 902 1 chr6D.!!$F1 901
34 TraesCS3A01G208100 chr6D 448956417 448957359 942 False 1000.000000 1000 86.589000 1 902 1 chr6D.!!$F3 901
35 TraesCS3A01G208100 chr6D 77709278 77710176 898 True 765.000000 765 82.410000 1 902 1 chr6D.!!$R1 901
36 TraesCS3A01G208100 chr5A 523619478 523620388 910 True 1402.000000 1402 94.627000 1 902 1 chr5A.!!$R2 901
37 TraesCS3A01G208100 chr5A 612760843 612761453 610 True 985.000000 985 95.752000 1 611 1 chr5A.!!$R3 610
38 TraesCS3A01G208100 chr7A 665976937 665977842 905 True 1365.000000 1365 93.963000 1 902 1 chr7A.!!$R1 901
39 TraesCS3A01G208100 chr7A 94445473 94446396 923 False 1282.000000 1282 92.125000 1 902 1 chr7A.!!$F1 901
40 TraesCS3A01G208100 chr4A 534199262 534200167 905 False 1354.000000 1354 93.833000 1 897 1 chr4A.!!$F2 896
41 TraesCS3A01G208100 chr2A 690341451 690342358 907 True 1334.000000 1334 93.304000 1 902 1 chr2A.!!$R1 901
42 TraesCS3A01G208100 chr1A 49344978 49345903 925 False 1262.000000 1262 91.694000 1 903 1 chr1A.!!$F1 902
43 TraesCS3A01G208100 chr1A 72584145 72585019 874 True 1024.000000 1024 88.295000 1 852 1 chr1A.!!$R2 851
44 TraesCS3A01G208100 chr7D 501825860 501826734 874 False 1068.000000 1068 89.192000 1 852 1 chr7D.!!$F2 851
45 TraesCS3A01G208100 chr7D 49876606 49877557 951 True 1037.000000 1037 87.134000 1 909 1 chr7D.!!$R1 908
46 TraesCS3A01G208100 chr7B 415416328 415417253 925 True 1046.000000 1046 87.540000 1 902 1 chr7B.!!$R3 901
47 TraesCS3A01G208100 chr7B 144748446 144749370 924 True 859.000000 859 84.047000 4 902 1 chr7B.!!$R2 898
48 TraesCS3A01G208100 chr6A 36427231 36428052 821 False 1029.000000 1029 89.915000 113 902 1 chr6A.!!$F1 789
49 TraesCS3A01G208100 chr4D 30903286 30904156 870 True 904.000000 904 86.114000 1 852 1 chr4D.!!$R1 851
50 TraesCS3A01G208100 chr4D 496005533 496006435 902 True 342.466667 804 95.386000 1 902 3 chr4D.!!$R3 901
51 TraesCS3A01G208100 chr1B 484261024 484261590 566 True 699.000000 699 89.631000 3767 4310 1 chr1B.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 966 0.109272 CTAGCTGCCTCGACGTTTGA 60.109 55.000 0.00 0.00 0.00 2.69 F
1537 1802 2.046023 TGGACTCTGCCATTGCCG 60.046 61.111 0.00 0.00 36.33 5.69 F
1547 1812 2.480610 CCATTGCCGCGGCTACATT 61.481 57.895 45.79 24.88 42.51 2.71 F
2408 3240 2.747855 GCCGGTCTCTTGGCCTTG 60.748 66.667 3.32 0.00 45.73 3.61 F
3372 4262 0.103337 AGGAGGAAAACCCCTTCCCT 60.103 55.000 0.00 0.00 45.28 4.20 F
3373 4263 0.331954 GGAGGAAAACCCCTTCCCTC 59.668 60.000 0.00 0.00 45.28 4.30 F
3376 4266 0.331954 GGAAAACCCCTTCCCTCTCC 59.668 60.000 0.00 0.00 39.26 3.71 F
4592 5556 0.393808 AGACGGTGCACAGGTTGTTT 60.394 50.000 21.15 0.00 0.00 2.83 F
4896 5860 0.179111 GATGGCGACGGATCTTGACA 60.179 55.000 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2943 1.886542 GGGAAGCGACCAAATCAAACT 59.113 47.619 4.76 0.00 0.00 2.66 R
2486 3318 2.038007 TTGCTCTCCTCGCCCTCT 59.962 61.111 0.00 0.00 0.00 3.69 R
3008 3840 2.432628 GACCACTCAAGGACGCGG 60.433 66.667 12.47 0.00 0.00 6.46 R
4159 5100 0.320683 CATGCCGCCGATGGATCTAA 60.321 55.000 0.00 0.00 0.00 2.10 R
4592 5556 0.037590 CCGTCCCAAGAAATCCACCA 59.962 55.000 0.00 0.00 0.00 4.17 R
4761 5725 0.243365 GACACATGAATGCCGCCAAA 59.757 50.000 0.00 0.00 0.00 3.28 R
4896 5860 0.611062 AATCTGCACTGCACCATGCT 60.611 50.000 12.64 0.00 45.31 3.79 R
6227 7311 0.250727 TTGCCAGTTTAGCCGCTTCT 60.251 50.000 0.00 0.00 0.00 2.85 R
6790 7874 0.026285 CAAACGGATTGGATCGCGTC 59.974 55.000 5.77 2.75 35.94 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
329 507 9.574516 AAACACAAGGAGTATATGTCTTCTTTT 57.425 29.630 1.93 0.00 29.27 2.27
330 508 9.574516 AACACAAGGAGTATATGTCTTCTTTTT 57.425 29.630 1.93 0.00 29.27 1.94
489 670 3.470888 AACTCGGGGATGCTCCGG 61.471 66.667 5.83 0.00 46.78 5.14
678 891 0.955905 GGACCTTGGCGTTTTAAGCA 59.044 50.000 0.00 0.00 36.08 3.91
679 892 1.335597 GGACCTTGGCGTTTTAAGCAC 60.336 52.381 0.00 0.00 36.08 4.40
753 966 0.109272 CTAGCTGCCTCGACGTTTGA 60.109 55.000 0.00 0.00 0.00 2.69
1537 1802 2.046023 TGGACTCTGCCATTGCCG 60.046 61.111 0.00 0.00 36.33 5.69
1546 1811 2.901840 CCATTGCCGCGGCTACAT 60.902 61.111 45.79 32.19 42.51 2.29
1547 1812 2.480610 CCATTGCCGCGGCTACATT 61.481 57.895 45.79 24.88 42.51 2.71
1763 2426 4.083855 ACTGCTGTTAATGTTGATGTGTCG 60.084 41.667 0.00 0.00 0.00 4.35
1768 2431 6.129457 GCTGTTAATGTTGATGTGTCGAAAAC 60.129 38.462 0.00 0.00 0.00 2.43
2111 2943 4.075682 CAGTCTCAGTCAGTAAGGAGTCA 58.924 47.826 0.00 0.00 0.00 3.41
2345 3177 3.058160 CCTTCCACCAAGGCGCTG 61.058 66.667 7.64 0.00 45.76 5.18
2408 3240 2.747855 GCCGGTCTCTTGGCCTTG 60.748 66.667 3.32 0.00 45.73 3.61
2497 3329 3.385384 CAGCACAGAGGGCGAGGA 61.385 66.667 0.00 0.00 36.08 3.71
2500 3332 3.074999 GCACAGAGGGCGAGGAGAG 62.075 68.421 0.00 0.00 0.00 3.20
3256 4113 8.715191 ATCAGTTTCTCAGTTCATCAATACTC 57.285 34.615 0.00 0.00 0.00 2.59
3332 4222 4.023021 GTGTAGCTGTAGGTACTCATAGCC 60.023 50.000 18.63 0.00 46.08 3.93
3368 4258 5.135533 TCTTTAGAAAGGAGGAAAACCCCTT 59.864 40.000 2.29 0.00 41.70 3.95
3371 4261 0.784495 AAGGAGGAAAACCCCTTCCC 59.216 55.000 0.00 0.00 45.28 3.97
3372 4262 0.103337 AGGAGGAAAACCCCTTCCCT 60.103 55.000 0.00 0.00 45.28 4.20
3373 4263 0.331954 GGAGGAAAACCCCTTCCCTC 59.668 60.000 0.00 0.00 45.28 4.30
3374 4264 1.373536 GAGGAAAACCCCTTCCCTCT 58.626 55.000 0.00 0.00 45.28 3.69
3375 4265 1.282447 GAGGAAAACCCCTTCCCTCTC 59.718 57.143 0.00 0.00 45.28 3.20
3376 4266 0.331954 GGAAAACCCCTTCCCTCTCC 59.668 60.000 0.00 0.00 39.26 3.71
3377 4267 1.073098 GAAAACCCCTTCCCTCTCCA 58.927 55.000 0.00 0.00 0.00 3.86
3378 4268 1.641192 GAAAACCCCTTCCCTCTCCAT 59.359 52.381 0.00 0.00 0.00 3.41
3421 4311 7.770897 CACATAGCCATATTTATTACTCCCTCC 59.229 40.741 0.00 0.00 0.00 4.30
3422 4312 5.422214 AGCCATATTTATTACTCCCTCCG 57.578 43.478 0.00 0.00 0.00 4.63
3423 4313 4.844655 AGCCATATTTATTACTCCCTCCGT 59.155 41.667 0.00 0.00 0.00 4.69
3426 4316 5.338137 CCATATTTATTACTCCCTCCGTCCC 60.338 48.000 0.00 0.00 0.00 4.46
3427 4317 2.852714 TTATTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
3428 4318 3.339713 TTATTACTCCCTCCGTCCCAT 57.660 47.619 0.00 0.00 0.00 4.00
3430 4320 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
3431 4321 2.077687 TACTCCCTCCGTCCCATAAC 57.922 55.000 0.00 0.00 0.00 1.89
3479 4369 9.427821 AAGAGTAGAACATAAGTACCATCATCT 57.572 33.333 0.00 0.00 0.00 2.90
3489 4379 8.633561 CATAAGTACCATCATCTAGAACACTCA 58.366 37.037 0.00 0.00 0.00 3.41
3630 4520 0.685458 TCTAACCCGTGCTACTCCCC 60.685 60.000 0.00 0.00 0.00 4.81
3653 4543 6.709397 CCCCCGTTCCTAAATATAAGTCTTTC 59.291 42.308 0.00 0.00 0.00 2.62
3727 4617 9.950496 AGAGTGTAGATTCACTTATTTTGATGT 57.050 29.630 0.98 0.00 46.81 3.06
3880 4805 1.139947 CTTCTTCCCTCCTCGCGTC 59.860 63.158 5.77 0.00 0.00 5.19
4254 5195 2.183679 GTGAGGTTCTGTCTGGATCCT 58.816 52.381 14.23 0.00 37.92 3.24
4327 5268 1.228215 CATGGTGTGGTGCAGTCCA 60.228 57.895 0.00 0.00 34.85 4.02
4519 5482 1.600636 CCCACGATGGCACTGTTGT 60.601 57.895 0.00 0.00 35.79 3.32
4592 5556 0.393808 AGACGGTGCACAGGTTGTTT 60.394 50.000 21.15 0.00 0.00 2.83
4724 5688 1.280421 GAAGCTCCCAACTCCACTCAT 59.720 52.381 0.00 0.00 0.00 2.90
4816 5780 1.651240 CGGCATTCTTGGAGGTGCAG 61.651 60.000 0.00 0.00 39.27 4.41
4896 5860 0.179111 GATGGCGACGGATCTTGACA 60.179 55.000 0.00 0.00 0.00 3.58
4950 5916 4.148825 GGATGGACTCGCGCAGGT 62.149 66.667 8.75 4.83 0.00 4.00
5016 5982 0.250510 TGGCACGGTAGATGCAACAA 60.251 50.000 0.00 0.00 45.27 2.83
5042 6008 1.135915 CTCTGAAGATGGACTCGTGGG 59.864 57.143 0.00 0.00 0.00 4.61
5147 6113 0.405585 CCTGGTTGGGACCTCATGTT 59.594 55.000 0.00 0.00 46.66 2.71
5175 6141 3.957497 TGTTTAGGTTTGGCTGTGATGTT 59.043 39.130 0.00 0.00 0.00 2.71
5291 6257 7.386848 GCTGTTGTATGACTTTGTAAGGTCTTA 59.613 37.037 8.11 4.09 34.01 2.10
5300 6266 9.871238 TGACTTTGTAAGGTCTTATGAGAATAC 57.129 33.333 8.11 0.00 32.66 1.89
5326 6292 3.814268 GTGGCCGCATGCATCGTT 61.814 61.111 19.57 0.00 43.89 3.85
5445 6412 6.317088 TGTATTTAAGAACGGAGTGAGTACG 58.683 40.000 0.00 0.00 45.00 3.67
5521 6488 4.248691 AGTAAGGACCACGTACAAGTTC 57.751 45.455 0.00 0.00 36.63 3.01
5544 6619 7.750229 TCATCATGTAGCTCTGAAAGTTTTT 57.250 32.000 0.00 0.00 33.76 1.94
5631 6714 9.974980 AAAACACACTCATTACGGAAATTTAAT 57.025 25.926 0.00 0.00 0.00 1.40
5683 6767 7.064134 ACACTCGATATGCGACTTAAATTTTGA 59.936 33.333 0.00 0.00 45.59 2.69
5686 6770 6.905076 TCGATATGCGACTTAAATTTTGAAGC 59.095 34.615 0.00 0.00 45.59 3.86
5753 6837 1.631898 GGGGGCAGGTTTAGTAGTTGA 59.368 52.381 0.00 0.00 0.00 3.18
5910 6994 0.777446 TAGAGCAAACAAGCCCCCTT 59.223 50.000 0.00 0.00 34.23 3.95
6227 7311 2.851263 AAGGATGTTACTCGGCAACA 57.149 45.000 0.96 0.96 40.01 3.33
6341 7425 2.363038 CACCTTGTAATGGATGGGCATG 59.637 50.000 0.00 0.00 34.70 4.06
6568 7652 3.009723 GTTGCTGAGTAAAGGCTGCATA 58.990 45.455 0.50 0.00 38.47 3.14
6660 7744 3.381590 GCCCTTGTTTTCTTCAGACAGTT 59.618 43.478 0.00 0.00 0.00 3.16
6661 7745 4.142160 GCCCTTGTTTTCTTCAGACAGTTT 60.142 41.667 0.00 0.00 0.00 2.66
6662 7746 5.067283 GCCCTTGTTTTCTTCAGACAGTTTA 59.933 40.000 0.00 0.00 0.00 2.01
6663 7747 6.239036 GCCCTTGTTTTCTTCAGACAGTTTAT 60.239 38.462 0.00 0.00 0.00 1.40
6664 7748 7.040686 GCCCTTGTTTTCTTCAGACAGTTTATA 60.041 37.037 0.00 0.00 0.00 0.98
6665 7749 8.507249 CCCTTGTTTTCTTCAGACAGTTTATAG 58.493 37.037 0.00 0.00 0.00 1.31
6666 7750 8.017946 CCTTGTTTTCTTCAGACAGTTTATAGC 58.982 37.037 0.00 0.00 0.00 2.97
6667 7751 8.445275 TTGTTTTCTTCAGACAGTTTATAGCA 57.555 30.769 0.00 0.00 0.00 3.49
6668 7752 8.621532 TGTTTTCTTCAGACAGTTTATAGCAT 57.378 30.769 0.00 0.00 0.00 3.79
6669 7753 9.719355 TGTTTTCTTCAGACAGTTTATAGCATA 57.281 29.630 0.00 0.00 0.00 3.14
6671 7755 9.944376 TTTTCTTCAGACAGTTTATAGCATAGT 57.056 29.630 0.00 0.00 0.00 2.12
6672 7756 9.944376 TTTCTTCAGACAGTTTATAGCATAGTT 57.056 29.630 0.00 0.00 0.00 2.24
6673 7757 8.932945 TCTTCAGACAGTTTATAGCATAGTTG 57.067 34.615 0.00 0.00 0.00 3.16
6684 7768 2.193306 GCATAGTTGCCATGTTTCCG 57.807 50.000 0.00 0.00 43.38 4.30
6685 7769 1.202290 GCATAGTTGCCATGTTTCCGG 60.202 52.381 0.00 0.00 43.38 5.14
6686 7770 2.091541 CATAGTTGCCATGTTTCCGGT 58.908 47.619 0.00 0.00 0.00 5.28
6687 7771 3.275143 CATAGTTGCCATGTTTCCGGTA 58.725 45.455 0.00 0.00 0.00 4.02
6688 7772 1.530323 AGTTGCCATGTTTCCGGTAC 58.470 50.000 0.00 1.45 0.00 3.34
6701 7785 4.584688 GGTACGGTTGGAACGAGG 57.415 61.111 0.00 0.00 34.93 4.63
6702 7786 1.966762 GGTACGGTTGGAACGAGGA 59.033 57.895 0.00 0.00 34.93 3.71
6703 7787 0.318120 GGTACGGTTGGAACGAGGAA 59.682 55.000 0.00 0.00 34.93 3.36
6704 7788 1.422388 GTACGGTTGGAACGAGGAAC 58.578 55.000 0.00 0.00 34.93 3.62
6722 7806 3.198582 GGGAACGAGGGACGAGAG 58.801 66.667 0.00 0.00 45.77 3.20
6733 7817 2.282251 ACGAGAGTCGGTGGCTGA 60.282 61.111 0.86 0.00 45.59 4.26
6734 7818 1.901948 ACGAGAGTCGGTGGCTGAA 60.902 57.895 0.86 0.00 45.59 3.02
6735 7819 1.289066 CGAGAGTCGGTGGCTGAAA 59.711 57.895 0.00 0.00 36.00 2.69
6736 7820 0.319555 CGAGAGTCGGTGGCTGAAAA 60.320 55.000 0.00 0.00 36.00 2.29
6737 7821 1.872237 CGAGAGTCGGTGGCTGAAAAA 60.872 52.381 0.00 0.00 36.00 1.94
6761 7845 7.844493 AAATAGGATACAACGAGGGTATACA 57.156 36.000 5.01 0.03 35.01 2.29
6762 7846 8.431910 AAATAGGATACAACGAGGGTATACAT 57.568 34.615 5.01 0.00 35.01 2.29
6763 7847 5.979288 AGGATACAACGAGGGTATACATC 57.021 43.478 5.01 1.38 35.01 3.06
6764 7848 5.642165 AGGATACAACGAGGGTATACATCT 58.358 41.667 5.01 1.40 35.01 2.90
6765 7849 5.711036 AGGATACAACGAGGGTATACATCTC 59.289 44.000 5.01 9.79 35.01 2.75
6766 7850 5.711036 GGATACAACGAGGGTATACATCTCT 59.289 44.000 17.62 5.75 33.18 3.10
6767 7851 6.127952 GGATACAACGAGGGTATACATCTCTC 60.128 46.154 17.62 11.65 33.18 3.20
6769 7853 3.766068 ACGAGGGTATACATCTCTCGA 57.234 47.619 27.53 0.00 46.89 4.04
6770 7854 4.082665 ACGAGGGTATACATCTCTCGAA 57.917 45.455 27.53 0.00 46.89 3.71
6771 7855 4.653868 ACGAGGGTATACATCTCTCGAAT 58.346 43.478 27.53 14.13 46.89 3.34
6772 7856 4.456222 ACGAGGGTATACATCTCTCGAATG 59.544 45.833 27.53 14.06 46.89 2.67
6773 7857 4.695928 CGAGGGTATACATCTCTCGAATGA 59.304 45.833 21.59 0.00 46.89 2.57
6774 7858 5.355630 CGAGGGTATACATCTCTCGAATGAT 59.644 44.000 21.59 0.00 46.89 2.45
6775 7859 6.127869 CGAGGGTATACATCTCTCGAATGATT 60.128 42.308 21.59 0.00 46.89 2.57
6776 7860 7.546250 AGGGTATACATCTCTCGAATGATTT 57.454 36.000 5.01 0.00 0.00 2.17
6777 7861 7.967908 AGGGTATACATCTCTCGAATGATTTT 58.032 34.615 5.01 0.00 0.00 1.82
6778 7862 8.432805 AGGGTATACATCTCTCGAATGATTTTT 58.567 33.333 5.01 0.00 0.00 1.94
6807 7891 4.104143 GACGCGATCCAATCCGTT 57.896 55.556 15.93 0.00 36.69 4.44
6808 7892 2.380081 GACGCGATCCAATCCGTTT 58.620 52.632 15.93 0.00 36.69 3.60
6809 7893 0.026285 GACGCGATCCAATCCGTTTG 59.974 55.000 15.93 0.00 36.69 2.93
6819 7903 2.623535 CAATCCGTTTGGGTACGATGA 58.376 47.619 0.00 0.00 43.99 2.92
6820 7904 3.004171 CAATCCGTTTGGGTACGATGAA 58.996 45.455 0.00 0.00 43.99 2.57
6821 7905 2.083167 TCCGTTTGGGTACGATGAAC 57.917 50.000 0.00 0.00 43.99 3.18
6822 7906 1.081094 CCGTTTGGGTACGATGAACC 58.919 55.000 0.00 0.00 43.99 3.62
6826 7910 3.302129 GGGTACGATGAACCCGGT 58.698 61.111 0.00 0.00 46.95 5.28
6827 7911 2.503775 GGGTACGATGAACCCGGTA 58.496 57.895 0.00 0.00 46.95 4.02
6828 7912 0.103026 GGGTACGATGAACCCGGTAC 59.897 60.000 0.00 0.00 46.95 3.34
6845 7929 3.009301 GTACGGTACCATGAATCGAGG 57.991 52.381 13.54 0.00 0.00 4.63
6846 7930 1.771565 ACGGTACCATGAATCGAGGA 58.228 50.000 13.54 0.00 0.00 3.71
6847 7931 2.104967 ACGGTACCATGAATCGAGGAA 58.895 47.619 13.54 0.00 0.00 3.36
6848 7932 2.159142 ACGGTACCATGAATCGAGGAAC 60.159 50.000 13.54 0.00 0.00 3.62
6849 7933 2.159156 CGGTACCATGAATCGAGGAACA 60.159 50.000 13.54 0.00 0.00 3.18
6850 7934 3.195661 GGTACCATGAATCGAGGAACAC 58.804 50.000 7.15 0.00 0.00 3.32
6851 7935 3.369052 GGTACCATGAATCGAGGAACACA 60.369 47.826 7.15 0.00 0.00 3.72
6852 7936 2.977914 ACCATGAATCGAGGAACACAG 58.022 47.619 0.00 0.00 0.00 3.66
6853 7937 2.303022 ACCATGAATCGAGGAACACAGT 59.697 45.455 0.00 0.00 0.00 3.55
6854 7938 3.244561 ACCATGAATCGAGGAACACAGTT 60.245 43.478 0.00 0.00 0.00 3.16
6855 7939 3.753272 CCATGAATCGAGGAACACAGTTT 59.247 43.478 0.00 0.00 0.00 2.66
6856 7940 4.142816 CCATGAATCGAGGAACACAGTTTC 60.143 45.833 0.00 0.00 0.00 2.78
6857 7941 4.336889 TGAATCGAGGAACACAGTTTCT 57.663 40.909 0.00 0.00 0.00 2.52
6858 7942 4.058124 TGAATCGAGGAACACAGTTTCTG 58.942 43.478 0.00 0.00 37.52 3.02
6859 7943 4.202212 TGAATCGAGGAACACAGTTTCTGA 60.202 41.667 3.70 0.00 35.18 3.27
6860 7944 3.812156 TCGAGGAACACAGTTTCTGAA 57.188 42.857 3.70 0.00 35.18 3.02
6861 7945 3.717707 TCGAGGAACACAGTTTCTGAAG 58.282 45.455 3.70 0.00 35.18 3.02
6862 7946 3.383505 TCGAGGAACACAGTTTCTGAAGA 59.616 43.478 3.70 0.00 35.18 2.87
6863 7947 4.119862 CGAGGAACACAGTTTCTGAAGAA 58.880 43.478 3.70 0.00 35.18 2.52
6864 7948 4.025647 CGAGGAACACAGTTTCTGAAGAAC 60.026 45.833 3.70 0.00 35.18 3.01
6865 7949 3.871594 AGGAACACAGTTTCTGAAGAACG 59.128 43.478 3.70 0.00 35.18 3.95
6866 7950 3.869246 GGAACACAGTTTCTGAAGAACGA 59.131 43.478 3.70 0.00 35.18 3.85
6867 7951 4.260253 GGAACACAGTTTCTGAAGAACGAC 60.260 45.833 3.70 0.00 35.18 4.34
6868 7952 2.858344 ACACAGTTTCTGAAGAACGACG 59.142 45.455 3.70 0.00 35.18 5.12
6869 7953 3.113322 CACAGTTTCTGAAGAACGACGA 58.887 45.455 0.00 0.00 35.18 4.20
6870 7954 3.061139 CACAGTTTCTGAAGAACGACGAC 60.061 47.826 0.00 0.00 35.18 4.34
6871 7955 3.181489 ACAGTTTCTGAAGAACGACGACT 60.181 43.478 0.00 0.00 35.18 4.18
6872 7956 3.797256 CAGTTTCTGAAGAACGACGACTT 59.203 43.478 0.00 6.81 32.44 3.01
6873 7957 4.267928 CAGTTTCTGAAGAACGACGACTTT 59.732 41.667 0.00 0.00 32.44 2.66
6874 7958 4.267928 AGTTTCTGAAGAACGACGACTTTG 59.732 41.667 0.00 4.90 33.13 2.77
6875 7959 3.431922 TCTGAAGAACGACGACTTTGT 57.568 42.857 0.00 0.00 0.00 2.83
6876 7960 3.113322 TCTGAAGAACGACGACTTTGTG 58.887 45.455 0.00 2.45 0.00 3.33
6877 7961 3.113322 CTGAAGAACGACGACTTTGTGA 58.887 45.455 0.00 0.00 0.00 3.58
6878 7962 2.855963 TGAAGAACGACGACTTTGTGAC 59.144 45.455 0.00 0.00 0.00 3.67
6879 7963 1.474017 AGAACGACGACTTTGTGACG 58.526 50.000 0.00 0.00 39.53 4.35
6880 7964 0.501435 GAACGACGACTTTGTGACGG 59.499 55.000 0.00 0.00 38.09 4.79
6881 7965 0.179129 AACGACGACTTTGTGACGGT 60.179 50.000 0.00 0.00 38.09 4.83
6882 7966 0.593263 ACGACGACTTTGTGACGGTC 60.593 55.000 0.00 0.00 38.09 4.79
6883 7967 0.593008 CGACGACTTTGTGACGGTCA 60.593 55.000 6.76 6.76 38.09 4.02
6884 7968 1.129326 GACGACTTTGTGACGGTCAG 58.871 55.000 11.83 2.17 38.09 3.51
6885 7969 0.874607 ACGACTTTGTGACGGTCAGC 60.875 55.000 11.83 7.36 38.09 4.26
6886 7970 0.874175 CGACTTTGTGACGGTCAGCA 60.874 55.000 11.83 9.87 0.00 4.41
6887 7971 1.512926 GACTTTGTGACGGTCAGCAT 58.487 50.000 11.83 0.00 0.00 3.79
6888 7972 1.873591 GACTTTGTGACGGTCAGCATT 59.126 47.619 11.83 0.00 0.00 3.56
6889 7973 1.873591 ACTTTGTGACGGTCAGCATTC 59.126 47.619 11.83 0.00 0.00 2.67
6890 7974 1.197721 CTTTGTGACGGTCAGCATTCC 59.802 52.381 11.83 0.00 0.00 3.01
6891 7975 0.396435 TTGTGACGGTCAGCATTCCT 59.604 50.000 11.83 0.00 0.00 3.36
6892 7976 0.396435 TGTGACGGTCAGCATTCCTT 59.604 50.000 11.83 0.00 0.00 3.36
6893 7977 0.798776 GTGACGGTCAGCATTCCTTG 59.201 55.000 11.83 0.00 0.00 3.61
6907 7991 5.192327 CATTCCTTGCTGTTAATGGATCC 57.808 43.478 4.20 4.20 0.00 3.36
6908 7992 3.297134 TCCTTGCTGTTAATGGATCCC 57.703 47.619 9.90 0.00 0.00 3.85
6909 7993 2.852449 TCCTTGCTGTTAATGGATCCCT 59.148 45.455 9.90 0.00 0.00 4.20
6910 7994 3.269381 TCCTTGCTGTTAATGGATCCCTT 59.731 43.478 9.90 8.54 0.00 3.95
6911 7995 3.382546 CCTTGCTGTTAATGGATCCCTTG 59.617 47.826 9.90 0.00 0.00 3.61
6912 7996 2.378038 TGCTGTTAATGGATCCCTTGC 58.622 47.619 9.90 6.10 0.00 4.01
6913 7997 2.291475 TGCTGTTAATGGATCCCTTGCA 60.291 45.455 9.90 8.72 0.00 4.08
6914 7998 2.760092 GCTGTTAATGGATCCCTTGCAA 59.240 45.455 9.90 0.00 0.00 4.08
6915 7999 3.385755 GCTGTTAATGGATCCCTTGCAAT 59.614 43.478 9.90 0.00 0.00 3.56
6916 8000 4.141869 GCTGTTAATGGATCCCTTGCAATT 60.142 41.667 9.90 3.59 0.00 2.32
6917 8001 5.068987 GCTGTTAATGGATCCCTTGCAATTA 59.931 40.000 9.90 2.56 0.00 1.40
6918 8002 6.406849 GCTGTTAATGGATCCCTTGCAATTAA 60.407 38.462 9.90 8.74 0.00 1.40
6919 8003 7.673641 TGTTAATGGATCCCTTGCAATTAAT 57.326 32.000 9.90 0.00 0.00 1.40
6920 8004 7.499292 TGTTAATGGATCCCTTGCAATTAATG 58.501 34.615 9.90 0.00 0.00 1.90
6921 8005 5.556006 AATGGATCCCTTGCAATTAATGG 57.444 39.130 9.90 0.00 0.00 3.16
6922 8006 4.262891 TGGATCCCTTGCAATTAATGGA 57.737 40.909 9.90 1.92 0.00 3.41
6923 8007 3.960102 TGGATCCCTTGCAATTAATGGAC 59.040 43.478 9.90 0.00 29.04 4.02
6924 8008 4.218312 GGATCCCTTGCAATTAATGGACT 58.782 43.478 0.00 0.00 29.04 3.85
6925 8009 5.103728 TGGATCCCTTGCAATTAATGGACTA 60.104 40.000 9.90 0.00 29.04 2.59
6926 8010 5.474876 GGATCCCTTGCAATTAATGGACTAG 59.525 44.000 0.00 0.00 29.04 2.57
6927 8011 5.708736 TCCCTTGCAATTAATGGACTAGA 57.291 39.130 0.00 0.00 0.00 2.43
6928 8012 5.684704 TCCCTTGCAATTAATGGACTAGAG 58.315 41.667 0.00 0.00 0.00 2.43
6929 8013 4.823989 CCCTTGCAATTAATGGACTAGAGG 59.176 45.833 0.00 0.00 0.00 3.69
6930 8014 5.397899 CCCTTGCAATTAATGGACTAGAGGA 60.398 44.000 0.00 0.00 27.94 3.71
6931 8015 6.122277 CCTTGCAATTAATGGACTAGAGGAA 58.878 40.000 0.00 0.00 27.94 3.36
6932 8016 6.261826 CCTTGCAATTAATGGACTAGAGGAAG 59.738 42.308 0.00 0.00 27.94 3.46
6933 8017 6.560003 TGCAATTAATGGACTAGAGGAAGA 57.440 37.500 0.00 0.00 0.00 2.87
6934 8018 6.957631 TGCAATTAATGGACTAGAGGAAGAA 58.042 36.000 0.00 0.00 0.00 2.52
6935 8019 6.823689 TGCAATTAATGGACTAGAGGAAGAAC 59.176 38.462 0.00 0.00 0.00 3.01
6936 8020 6.018669 GCAATTAATGGACTAGAGGAAGAACG 60.019 42.308 0.00 0.00 0.00 3.95
6937 8021 7.265673 CAATTAATGGACTAGAGGAAGAACGA 58.734 38.462 0.00 0.00 0.00 3.85
6938 8022 4.993029 AATGGACTAGAGGAAGAACGAG 57.007 45.455 0.00 0.00 0.00 4.18
6939 8023 3.715638 TGGACTAGAGGAAGAACGAGA 57.284 47.619 0.00 0.00 0.00 4.04
6940 8024 4.030314 TGGACTAGAGGAAGAACGAGAA 57.970 45.455 0.00 0.00 0.00 2.87
6941 8025 4.011023 TGGACTAGAGGAAGAACGAGAAG 58.989 47.826 0.00 0.00 0.00 2.85
6942 8026 4.011698 GGACTAGAGGAAGAACGAGAAGT 58.988 47.826 0.00 0.00 0.00 3.01
6943 8027 4.095334 GGACTAGAGGAAGAACGAGAAGTC 59.905 50.000 0.00 0.00 0.00 3.01
6944 8028 4.011698 ACTAGAGGAAGAACGAGAAGTCC 58.988 47.826 0.00 0.00 0.00 3.85
6945 8029 3.163616 AGAGGAAGAACGAGAAGTCCT 57.836 47.619 0.00 0.00 41.49 3.85
6946 8030 3.502356 AGAGGAAGAACGAGAAGTCCTT 58.498 45.455 0.00 0.00 38.85 3.36
6947 8031 3.257127 AGAGGAAGAACGAGAAGTCCTTG 59.743 47.826 0.00 0.00 38.85 3.61
6948 8032 3.231818 AGGAAGAACGAGAAGTCCTTGA 58.768 45.455 0.00 0.00 35.06 3.02
6949 8033 3.257127 AGGAAGAACGAGAAGTCCTTGAG 59.743 47.826 0.00 0.00 35.06 3.02
6950 8034 3.256136 GGAAGAACGAGAAGTCCTTGAGA 59.744 47.826 0.00 0.00 0.00 3.27
6951 8035 4.262079 GGAAGAACGAGAAGTCCTTGAGAA 60.262 45.833 0.00 0.00 0.00 2.87
6952 8036 4.939052 AGAACGAGAAGTCCTTGAGAAA 57.061 40.909 0.00 0.00 0.00 2.52
6953 8037 5.277857 AGAACGAGAAGTCCTTGAGAAAA 57.722 39.130 0.00 0.00 0.00 2.29
6954 8038 5.293560 AGAACGAGAAGTCCTTGAGAAAAG 58.706 41.667 0.00 0.00 0.00 2.27
6955 8039 4.939052 ACGAGAAGTCCTTGAGAAAAGA 57.061 40.909 0.00 0.00 0.00 2.52
6956 8040 5.277857 ACGAGAAGTCCTTGAGAAAAGAA 57.722 39.130 0.00 0.00 0.00 2.52
6957 8041 5.671493 ACGAGAAGTCCTTGAGAAAAGAAA 58.329 37.500 0.00 0.00 0.00 2.52
6958 8042 5.524281 ACGAGAAGTCCTTGAGAAAAGAAAC 59.476 40.000 0.00 0.00 0.00 2.78
6959 8043 5.332656 CGAGAAGTCCTTGAGAAAAGAAACG 60.333 44.000 0.00 0.00 0.00 3.60
6960 8044 5.671493 AGAAGTCCTTGAGAAAAGAAACGA 58.329 37.500 0.00 0.00 0.00 3.85
6961 8045 5.524281 AGAAGTCCTTGAGAAAAGAAACGAC 59.476 40.000 0.00 0.00 0.00 4.34
6962 8046 3.802685 AGTCCTTGAGAAAAGAAACGACG 59.197 43.478 0.00 0.00 0.00 5.12
6963 8047 3.059800 GTCCTTGAGAAAAGAAACGACGG 60.060 47.826 0.00 0.00 0.00 4.79
6964 8048 2.349532 CCTTGAGAAAAGAAACGACGGC 60.350 50.000 0.00 0.00 0.00 5.68
6965 8049 0.856641 TGAGAAAAGAAACGACGGCG 59.143 50.000 10.39 10.39 44.79 6.46
6978 8062 3.483261 CGACGGCGTGAGTAAATTATG 57.517 47.619 21.19 0.00 0.00 1.90
6979 8063 2.347292 CGACGGCGTGAGTAAATTATGC 60.347 50.000 21.19 0.00 0.00 3.14
6980 8064 1.937899 ACGGCGTGAGTAAATTATGCC 59.062 47.619 13.76 0.00 41.88 4.40
6981 8065 2.210116 CGGCGTGAGTAAATTATGCCT 58.790 47.619 0.00 0.00 42.86 4.75
6982 8066 2.612212 CGGCGTGAGTAAATTATGCCTT 59.388 45.455 0.00 0.00 42.86 4.35
6983 8067 3.546020 CGGCGTGAGTAAATTATGCCTTG 60.546 47.826 0.00 0.00 42.86 3.61
6984 8068 3.363178 GCGTGAGTAAATTATGCCTTGC 58.637 45.455 0.00 0.00 0.00 4.01
6985 8069 3.607439 CGTGAGTAAATTATGCCTTGCG 58.393 45.455 0.00 0.00 0.00 4.85
6986 8070 3.063452 CGTGAGTAAATTATGCCTTGCGT 59.937 43.478 0.00 0.00 0.00 5.24
6987 8071 4.436852 CGTGAGTAAATTATGCCTTGCGTT 60.437 41.667 0.00 0.00 0.00 4.84
6988 8072 5.399013 GTGAGTAAATTATGCCTTGCGTTT 58.601 37.500 0.00 0.00 0.00 3.60
6989 8073 5.861787 GTGAGTAAATTATGCCTTGCGTTTT 59.138 36.000 0.00 0.00 0.00 2.43
6990 8074 6.364976 GTGAGTAAATTATGCCTTGCGTTTTT 59.635 34.615 0.00 0.00 0.00 1.94
6991 8075 6.364706 TGAGTAAATTATGCCTTGCGTTTTTG 59.635 34.615 0.00 0.00 0.00 2.44
6992 8076 4.403015 AAATTATGCCTTGCGTTTTTGC 57.597 36.364 0.00 0.00 0.00 3.68
6993 8077 2.810439 TTATGCCTTGCGTTTTTGCT 57.190 40.000 0.00 0.00 35.36 3.91
6994 8078 2.063156 TATGCCTTGCGTTTTTGCTG 57.937 45.000 0.00 0.00 35.36 4.41
6995 8079 0.104671 ATGCCTTGCGTTTTTGCTGT 59.895 45.000 0.00 0.00 35.36 4.40
6996 8080 0.108424 TGCCTTGCGTTTTTGCTGTT 60.108 45.000 0.00 0.00 35.36 3.16
6997 8081 0.301388 GCCTTGCGTTTTTGCTGTTG 59.699 50.000 0.00 0.00 35.36 3.33
6998 8082 0.929615 CCTTGCGTTTTTGCTGTTGG 59.070 50.000 0.00 0.00 35.36 3.77
6999 8083 1.470632 CCTTGCGTTTTTGCTGTTGGA 60.471 47.619 0.00 0.00 35.36 3.53
7000 8084 2.472816 CTTGCGTTTTTGCTGTTGGAT 58.527 42.857 0.00 0.00 35.36 3.41
7001 8085 2.132740 TGCGTTTTTGCTGTTGGATC 57.867 45.000 0.00 0.00 35.36 3.36
7002 8086 1.269517 TGCGTTTTTGCTGTTGGATCC 60.270 47.619 4.20 4.20 35.36 3.36
7003 8087 1.000274 GCGTTTTTGCTGTTGGATCCT 60.000 47.619 14.23 0.00 0.00 3.24
7004 8088 2.922335 GCGTTTTTGCTGTTGGATCCTC 60.922 50.000 14.23 6.93 0.00 3.71
7005 8089 2.665519 CGTTTTTGCTGTTGGATCCTCG 60.666 50.000 14.23 0.00 0.00 4.63
7006 8090 2.552315 GTTTTTGCTGTTGGATCCTCGA 59.448 45.455 14.23 0.00 0.00 4.04
7007 8091 2.559698 TTTGCTGTTGGATCCTCGAA 57.440 45.000 14.23 0.00 0.00 3.71
7008 8092 1.808411 TTGCTGTTGGATCCTCGAAC 58.192 50.000 14.23 9.82 35.94 3.95
7009 8093 0.036388 TGCTGTTGGATCCTCGAACC 60.036 55.000 14.23 0.00 34.73 3.62
7010 8094 0.250513 GCTGTTGGATCCTCGAACCT 59.749 55.000 14.23 0.00 34.73 3.50
7011 8095 2.009042 GCTGTTGGATCCTCGAACCTG 61.009 57.143 14.23 6.30 34.73 4.00
7012 8096 1.550524 CTGTTGGATCCTCGAACCTGA 59.449 52.381 14.23 0.00 34.73 3.86
7013 8097 1.974957 TGTTGGATCCTCGAACCTGAA 59.025 47.619 14.23 0.00 34.73 3.02
7014 8098 2.571653 TGTTGGATCCTCGAACCTGAAT 59.428 45.455 14.23 0.00 34.73 2.57
7015 8099 3.198872 GTTGGATCCTCGAACCTGAATC 58.801 50.000 14.23 0.00 30.26 2.52
7016 8100 1.409064 TGGATCCTCGAACCTGAATCG 59.591 52.381 14.23 0.00 41.53 3.34
7017 8101 1.681793 GGATCCTCGAACCTGAATCGA 59.318 52.381 3.84 0.00 46.18 3.59
7022 8106 0.456221 TCGAACCTGAATCGAGGAGC 59.544 55.000 5.89 0.00 43.76 4.70
7023 8107 0.528684 CGAACCTGAATCGAGGAGCC 60.529 60.000 5.89 0.00 42.76 4.70
7024 8108 0.528684 GAACCTGAATCGAGGAGCCG 60.529 60.000 5.89 0.00 36.51 5.52
7025 8109 0.970937 AACCTGAATCGAGGAGCCGA 60.971 55.000 5.89 0.00 43.16 5.54
7026 8110 1.066587 CCTGAATCGAGGAGCCGAC 59.933 63.158 0.00 0.00 41.70 4.79
7027 8111 1.388065 CCTGAATCGAGGAGCCGACT 61.388 60.000 0.00 0.00 41.70 4.18
7028 8112 0.248825 CTGAATCGAGGAGCCGACTG 60.249 60.000 0.00 0.00 41.70 3.51
7029 8113 1.590259 GAATCGAGGAGCCGACTGC 60.590 63.158 0.00 0.00 41.70 4.40
7048 8132 3.669354 GGAGACGCCGAATCTTCAT 57.331 52.632 0.00 0.00 0.00 2.57
7049 8133 1.492720 GGAGACGCCGAATCTTCATC 58.507 55.000 0.00 0.00 0.00 2.92
7050 8134 1.124462 GAGACGCCGAATCTTCATCG 58.876 55.000 0.00 0.00 39.92 3.84
7051 8135 0.738975 AGACGCCGAATCTTCATCGA 59.261 50.000 0.00 0.00 42.76 3.59
7052 8136 1.134367 AGACGCCGAATCTTCATCGAA 59.866 47.619 0.00 0.00 42.76 3.71
7053 8137 2.128035 GACGCCGAATCTTCATCGAAT 58.872 47.619 0.00 0.00 42.76 3.34
7054 8138 2.128035 ACGCCGAATCTTCATCGAATC 58.872 47.619 0.00 0.00 42.76 2.52
7055 8139 1.123217 CGCCGAATCTTCATCGAATCG 59.877 52.381 0.00 0.00 42.76 3.34
7056 8140 2.128035 GCCGAATCTTCATCGAATCGT 58.872 47.619 1.52 0.00 42.76 3.73
7057 8141 3.305964 GCCGAATCTTCATCGAATCGTA 58.694 45.455 1.52 0.00 42.76 3.43
7058 8142 3.119792 GCCGAATCTTCATCGAATCGTAC 59.880 47.826 1.52 0.00 42.76 3.67
7059 8143 4.537965 CCGAATCTTCATCGAATCGTACT 58.462 43.478 1.52 0.00 42.76 2.73
7060 8144 4.380087 CCGAATCTTCATCGAATCGTACTG 59.620 45.833 1.52 0.00 42.76 2.74
7061 8145 5.205565 CGAATCTTCATCGAATCGTACTGA 58.794 41.667 1.52 2.07 42.76 3.41
7062 8146 5.681543 CGAATCTTCATCGAATCGTACTGAA 59.318 40.000 1.52 9.63 42.76 3.02
7063 8147 6.360947 CGAATCTTCATCGAATCGTACTGAAT 59.639 38.462 14.40 4.93 42.76 2.57
7064 8148 7.408815 CGAATCTTCATCGAATCGTACTGAATC 60.409 40.741 14.40 10.42 42.76 2.52
7065 8149 5.520632 TCTTCATCGAATCGTACTGAATCC 58.479 41.667 14.40 0.00 0.00 3.01
7066 8150 3.885358 TCATCGAATCGTACTGAATCCG 58.115 45.455 1.52 0.00 0.00 4.18
7067 8151 3.562557 TCATCGAATCGTACTGAATCCGA 59.437 43.478 1.52 0.00 34.79 4.55
7068 8152 3.329743 TCGAATCGTACTGAATCCGAC 57.670 47.619 1.52 0.00 32.86 4.79
7069 8153 2.032550 TCGAATCGTACTGAATCCGACC 59.967 50.000 1.52 0.00 32.86 4.79
7070 8154 2.033049 CGAATCGTACTGAATCCGACCT 59.967 50.000 0.00 0.00 32.86 3.85
7071 8155 3.630101 GAATCGTACTGAATCCGACCTC 58.370 50.000 0.00 0.00 32.86 3.85
7072 8156 1.012086 TCGTACTGAATCCGACCTCG 58.988 55.000 0.00 0.00 39.44 4.63
7073 8157 0.731417 CGTACTGAATCCGACCTCGT 59.269 55.000 0.00 0.00 37.74 4.18
7074 8158 1.131883 CGTACTGAATCCGACCTCGTT 59.868 52.381 0.00 0.00 37.74 3.85
7075 8159 2.790468 CGTACTGAATCCGACCTCGTTC 60.790 54.545 0.00 0.00 37.74 3.95
7076 8160 0.531200 ACTGAATCCGACCTCGTTCC 59.469 55.000 0.00 0.00 37.74 3.62
7077 8161 0.179108 CTGAATCCGACCTCGTTCCC 60.179 60.000 0.00 0.00 37.74 3.97
7078 8162 1.226888 GAATCCGACCTCGTTCCCG 60.227 63.158 0.00 0.00 37.74 5.14
7079 8163 1.660560 GAATCCGACCTCGTTCCCGA 61.661 60.000 0.00 0.00 41.73 5.14
7080 8164 1.252904 AATCCGACCTCGTTCCCGAA 61.253 55.000 0.00 0.00 43.69 4.30
7081 8165 1.041447 ATCCGACCTCGTTCCCGAAT 61.041 55.000 0.00 0.00 43.69 3.34
7082 8166 1.226888 CCGACCTCGTTCCCGAATC 60.227 63.158 0.00 0.00 43.69 2.52
7083 8167 1.226888 CGACCTCGTTCCCGAATCC 60.227 63.158 0.00 0.00 43.69 3.01
7084 8168 1.226888 GACCTCGTTCCCGAATCCG 60.227 63.158 0.00 0.00 43.69 4.18
7085 8169 1.660560 GACCTCGTTCCCGAATCCGA 61.661 60.000 0.00 0.00 43.69 4.55
7086 8170 1.041447 ACCTCGTTCCCGAATCCGAT 61.041 55.000 0.00 0.00 43.69 4.18
7087 8171 0.104304 CCTCGTTCCCGAATCCGATT 59.896 55.000 0.00 0.00 43.69 3.34
7088 8172 1.488527 CTCGTTCCCGAATCCGATTC 58.511 55.000 10.64 10.64 43.69 2.52
7089 8173 0.103572 TCGTTCCCGAATCCGATTCC 59.896 55.000 14.28 0.92 40.86 3.01
7090 8174 1.213094 CGTTCCCGAATCCGATTCCG 61.213 60.000 14.28 8.61 38.22 4.30
7101 8185 3.588277 CGATTCCGGGTCGATGAAT 57.412 52.632 20.80 3.31 41.40 2.57
7102 8186 1.419374 CGATTCCGGGTCGATGAATC 58.581 55.000 20.80 11.06 41.40 2.52
7103 8187 1.269569 CGATTCCGGGTCGATGAATCA 60.270 52.381 20.80 0.00 42.78 2.57
7104 8188 2.801699 CGATTCCGGGTCGATGAATCAA 60.802 50.000 20.80 0.00 42.78 2.57
7105 8189 2.309528 TTCCGGGTCGATGAATCAAG 57.690 50.000 0.00 0.00 0.00 3.02
7106 8190 1.480789 TCCGGGTCGATGAATCAAGA 58.519 50.000 0.00 0.00 0.00 3.02
7107 8191 2.039418 TCCGGGTCGATGAATCAAGAT 58.961 47.619 0.00 0.00 0.00 2.40
7108 8192 2.035961 TCCGGGTCGATGAATCAAGATC 59.964 50.000 0.00 0.00 0.00 2.75
7109 8193 2.054363 CGGGTCGATGAATCAAGATCG 58.946 52.381 0.00 0.00 42.29 3.69
7110 8194 2.287608 CGGGTCGATGAATCAAGATCGA 60.288 50.000 3.62 3.62 46.17 3.59
7113 8197 3.650070 TCGATGAATCAAGATCGAGGG 57.350 47.619 3.62 0.00 44.13 4.30
7114 8198 3.222603 TCGATGAATCAAGATCGAGGGA 58.777 45.455 3.62 0.00 44.13 4.20
7115 8199 3.004839 TCGATGAATCAAGATCGAGGGAC 59.995 47.826 3.62 0.00 44.13 4.46
7116 8200 2.871182 TGAATCAAGATCGAGGGACG 57.129 50.000 0.00 0.00 44.09 4.79
7117 8201 1.409064 TGAATCAAGATCGAGGGACGG 59.591 52.381 0.00 0.00 42.82 4.79
7118 8202 0.105039 AATCAAGATCGAGGGACGGC 59.895 55.000 0.00 0.00 42.82 5.68
7119 8203 1.749334 ATCAAGATCGAGGGACGGCC 61.749 60.000 0.00 0.00 42.82 6.13
7120 8204 2.042843 AAGATCGAGGGACGGCCT 60.043 61.111 7.57 0.00 42.82 5.19
7121 8205 1.107538 CAAGATCGAGGGACGGCCTA 61.108 60.000 7.57 0.00 42.82 3.93
7122 8206 1.108132 AAGATCGAGGGACGGCCTAC 61.108 60.000 7.57 0.00 42.82 3.18
7123 8207 2.521224 ATCGAGGGACGGCCTACC 60.521 66.667 7.57 3.54 42.82 3.18
7133 8217 3.709633 GGCCTACCGTTCCCCGTT 61.710 66.667 0.00 0.00 33.66 4.44
7134 8218 2.348620 GCCTACCGTTCCCCGTTT 59.651 61.111 0.00 0.00 33.66 3.60
7135 8219 1.742880 GCCTACCGTTCCCCGTTTC 60.743 63.158 0.00 0.00 33.66 2.78
7136 8220 1.078918 CCTACCGTTCCCCGTTTCC 60.079 63.158 0.00 0.00 33.66 3.13
7137 8221 1.446618 CTACCGTTCCCCGTTTCCG 60.447 63.158 0.00 0.00 33.66 4.30
7149 8233 2.304751 CGTTTCCGGCTACTATGGTT 57.695 50.000 0.00 0.00 0.00 3.67
7150 8234 2.624636 CGTTTCCGGCTACTATGGTTT 58.375 47.619 0.00 0.00 0.00 3.27
7311 8397 2.682856 TGTCTTGTCTTGTTGGTTGCTC 59.317 45.455 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
673 886 2.736995 GCTGACGTGGCGTGCTTA 60.737 61.111 0.00 0.00 41.37 3.09
753 966 1.873591 CTAGCGTTTCAAGCCAACACT 59.126 47.619 0.00 0.00 34.64 3.55
877 1100 4.566004 CCGAAATCACTGTTCTGACCTTA 58.434 43.478 0.00 0.00 0.00 2.69
1349 1609 4.687215 TGAGCCGTGTGAGCCTGC 62.687 66.667 0.00 0.00 0.00 4.85
1372 1632 4.395959 AGTTGTTGACGTTGAGGTAGAA 57.604 40.909 0.00 0.00 0.00 2.10
1537 1802 1.946768 TCCAAGCAATAATGTAGCCGC 59.053 47.619 0.00 0.00 0.00 6.53
1546 1811 6.038161 ACGAATCGAATCAATCCAAGCAATAA 59.962 34.615 10.55 0.00 0.00 1.40
1547 1812 5.527214 ACGAATCGAATCAATCCAAGCAATA 59.473 36.000 10.55 0.00 0.00 1.90
2111 2943 1.886542 GGGAAGCGACCAAATCAAACT 59.113 47.619 4.76 0.00 0.00 2.66
2486 3318 2.038007 TTGCTCTCCTCGCCCTCT 59.962 61.111 0.00 0.00 0.00 3.69
2594 3426 3.003763 ACCTCCTGCGAGAACCCC 61.004 66.667 0.00 0.00 38.52 4.95
3008 3840 2.432628 GACCACTCAAGGACGCGG 60.433 66.667 12.47 0.00 0.00 6.46
3227 4084 5.005740 TGATGAACTGAGAAACTGATTGGG 58.994 41.667 0.00 0.00 0.00 4.12
3332 4222 5.010012 TCCTTTCTAAAGAAAAGCAAGCAGG 59.990 40.000 6.61 2.40 42.72 4.85
3368 4258 2.910977 CCATGATGATGATGGAGAGGGA 59.089 50.000 4.81 0.00 42.81 4.20
3371 4261 4.618920 TCACCATGATGATGATGGAGAG 57.381 45.455 17.90 7.10 42.81 3.20
3447 4337 9.636789 TGGTACTTATGTTCTACTCTTAGCATA 57.363 33.333 0.00 0.00 0.00 3.14
3450 4340 8.630917 TGATGGTACTTATGTTCTACTCTTAGC 58.369 37.037 0.00 0.00 0.00 3.09
3465 4355 8.589701 TTGAGTGTTCTAGATGATGGTACTTA 57.410 34.615 0.00 0.00 0.00 2.24
3479 4369 9.871238 GTACTTAGGATGATTTTGAGTGTTCTA 57.129 33.333 0.00 0.00 0.00 2.10
3489 4379 6.674419 ACAGAGGGAGTACTTAGGATGATTTT 59.326 38.462 0.00 0.00 0.00 1.82
3630 4520 9.694137 CTAGAAAGACTTATATTTAGGAACGGG 57.306 37.037 0.00 0.00 0.00 5.28
3723 4613 0.817654 GCAGGGGCTTGGTTTACATC 59.182 55.000 0.00 0.00 36.96 3.06
3724 4614 0.965363 CGCAGGGGCTTGGTTTACAT 60.965 55.000 0.00 0.00 38.10 2.29
3725 4615 1.602323 CGCAGGGGCTTGGTTTACA 60.602 57.895 0.00 0.00 38.10 2.41
3726 4616 1.583495 GACGCAGGGGCTTGGTTTAC 61.583 60.000 0.00 0.00 38.10 2.01
3727 4617 1.302993 GACGCAGGGGCTTGGTTTA 60.303 57.895 0.00 0.00 38.10 2.01
4159 5100 0.320683 CATGCCGCCGATGGATCTAA 60.321 55.000 0.00 0.00 0.00 2.10
4235 5176 2.182827 CAGGATCCAGACAGAACCTCA 58.817 52.381 15.82 0.00 36.96 3.86
4314 5255 1.073025 GGACATGGACTGCACCACA 59.927 57.895 0.00 0.00 43.03 4.17
4342 5283 0.391661 AAAGCAGATCGCCGTCACAT 60.392 50.000 6.02 0.00 44.04 3.21
4391 5332 4.208686 GAGAAGGATCCCGCGCGT 62.209 66.667 29.95 10.71 0.00 6.01
4448 5411 0.324738 CACCACTGGAGCCTAGGAGA 60.325 60.000 14.75 0.00 0.00 3.71
4491 5454 2.366837 ATCGTGGGATCCCTGGCA 60.367 61.111 31.05 13.03 36.94 4.92
4592 5556 0.037590 CCGTCCCAAGAAATCCACCA 59.962 55.000 0.00 0.00 0.00 4.17
4761 5725 0.243365 GACACATGAATGCCGCCAAA 59.757 50.000 0.00 0.00 0.00 3.28
4896 5860 0.611062 AATCTGCACTGCACCATGCT 60.611 50.000 12.64 0.00 45.31 3.79
5016 5982 4.707448 ACGAGTCCATCTTCAGAGTTGTAT 59.293 41.667 0.00 0.00 29.87 2.29
5144 6110 6.322712 ACAGCCAAACCTAAACATCTAAAACA 59.677 34.615 0.00 0.00 0.00 2.83
5147 6113 6.065374 TCACAGCCAAACCTAAACATCTAAA 58.935 36.000 0.00 0.00 0.00 1.85
5175 6141 3.332485 AGTCTGGGCCTAATACCAAACAA 59.668 43.478 4.53 0.00 36.09 2.83
5291 6257 6.204882 GCGGCCACTTTATTAAGTATTCTCAT 59.795 38.462 2.24 0.00 42.67 2.90
5300 6266 2.098934 TGCATGCGGCCACTTTATTAAG 59.901 45.455 14.09 0.00 43.89 1.85
5326 6292 1.457643 CCCCGGCCTCTACATCTGA 60.458 63.158 0.00 0.00 0.00 3.27
5333 6299 2.122989 GATGACCCCCGGCCTCTA 60.123 66.667 0.00 0.00 0.00 2.43
5422 6389 5.741040 CCGTACTCACTCCGTTCTTAAATAC 59.259 44.000 0.00 0.00 0.00 1.89
5445 6412 1.401905 GGATGCAACCGATGAAAGACC 59.598 52.381 0.00 0.00 0.00 3.85
5631 6714 5.069781 AGTTTGTGCTTTACTTTGGGCATTA 59.930 36.000 0.00 0.00 37.05 1.90
5683 6767 2.123033 GGTTGGGTGGGGTTGCTT 60.123 61.111 0.00 0.00 0.00 3.91
5686 6770 2.917227 GCTGGTTGGGTGGGGTTG 60.917 66.667 0.00 0.00 0.00 3.77
5753 6837 2.818169 TTTGGAGACACAGCCGGCT 61.818 57.895 27.08 27.08 42.67 5.52
6227 7311 0.250727 TTGCCAGTTTAGCCGCTTCT 60.251 50.000 0.00 0.00 0.00 2.85
6266 7350 3.003793 GTCTTTGCTCAGGGTTTTCACTC 59.996 47.826 0.00 0.00 0.00 3.51
6328 7412 1.140052 CACATTGCATGCCCATCCATT 59.860 47.619 16.68 0.00 0.00 3.16
6666 7750 2.091541 ACCGGAAACATGGCAACTATG 58.908 47.619 9.46 0.00 37.61 2.23
6667 7751 2.507407 ACCGGAAACATGGCAACTAT 57.493 45.000 9.46 0.00 37.61 2.12
6668 7752 2.702261 GTACCGGAAACATGGCAACTA 58.298 47.619 9.46 0.00 37.61 2.24
6669 7753 1.530323 GTACCGGAAACATGGCAACT 58.470 50.000 9.46 0.00 37.61 3.16
6670 7754 0.167251 CGTACCGGAAACATGGCAAC 59.833 55.000 9.46 0.00 0.00 4.17
6671 7755 2.545875 CGTACCGGAAACATGGCAA 58.454 52.632 9.46 0.00 0.00 4.52
6672 7756 4.287580 CGTACCGGAAACATGGCA 57.712 55.556 9.46 0.00 0.00 4.92
6683 7767 1.444895 CCTCGTTCCAACCGTACCG 60.445 63.158 0.00 0.00 0.00 4.02
6684 7768 0.318120 TTCCTCGTTCCAACCGTACC 59.682 55.000 0.00 0.00 0.00 3.34
6685 7769 1.422388 GTTCCTCGTTCCAACCGTAC 58.578 55.000 0.00 0.00 0.00 3.67
6686 7770 0.039256 CGTTCCTCGTTCCAACCGTA 60.039 55.000 0.00 0.00 34.52 4.02
6687 7771 1.300388 CGTTCCTCGTTCCAACCGT 60.300 57.895 0.00 0.00 34.52 4.83
6688 7772 2.025418 CCGTTCCTCGTTCCAACCG 61.025 63.158 0.00 0.00 37.94 4.44
6689 7773 1.670083 CCCGTTCCTCGTTCCAACC 60.670 63.158 0.00 0.00 37.94 3.77
6690 7774 0.249996 TTCCCGTTCCTCGTTCCAAC 60.250 55.000 0.00 0.00 37.94 3.77
6691 7775 0.249996 GTTCCCGTTCCTCGTTCCAA 60.250 55.000 0.00 0.00 37.94 3.53
6692 7776 1.368579 GTTCCCGTTCCTCGTTCCA 59.631 57.895 0.00 0.00 37.94 3.53
6693 7777 1.735559 CGTTCCCGTTCCTCGTTCC 60.736 63.158 0.00 0.00 37.94 3.62
6694 7778 0.731855 CTCGTTCCCGTTCCTCGTTC 60.732 60.000 0.00 0.00 37.94 3.95
6695 7779 1.288127 CTCGTTCCCGTTCCTCGTT 59.712 57.895 0.00 0.00 37.94 3.85
6696 7780 2.633509 CCTCGTTCCCGTTCCTCGT 61.634 63.158 0.00 0.00 37.94 4.18
6697 7781 2.181021 CCTCGTTCCCGTTCCTCG 59.819 66.667 0.00 0.00 39.52 4.63
6698 7782 1.980772 TCCCTCGTTCCCGTTCCTC 60.981 63.158 0.00 0.00 35.01 3.71
6699 7783 2.118951 TCCCTCGTTCCCGTTCCT 59.881 61.111 0.00 0.00 35.01 3.36
6700 7784 2.263852 GTCCCTCGTTCCCGTTCC 59.736 66.667 0.00 0.00 35.01 3.62
6701 7785 2.126189 CGTCCCTCGTTCCCGTTC 60.126 66.667 0.00 0.00 35.01 3.95
6702 7786 2.598394 TCGTCCCTCGTTCCCGTT 60.598 61.111 0.00 0.00 40.80 4.44
6703 7787 3.060615 CTCGTCCCTCGTTCCCGT 61.061 66.667 0.00 0.00 40.80 5.28
6704 7788 2.749044 TCTCGTCCCTCGTTCCCG 60.749 66.667 0.00 0.00 40.80 5.14
6705 7789 1.655885 GACTCTCGTCCCTCGTTCCC 61.656 65.000 0.00 0.00 40.80 3.97
6706 7790 1.801983 GACTCTCGTCCCTCGTTCC 59.198 63.158 0.00 0.00 40.80 3.62
6707 7791 1.424635 CGACTCTCGTCCCTCGTTC 59.575 63.158 0.00 0.00 40.80 3.95
6708 7792 2.039405 CCGACTCTCGTCCCTCGTT 61.039 63.158 0.00 0.00 38.40 3.85
6709 7793 2.436292 CCGACTCTCGTCCCTCGT 60.436 66.667 0.00 0.00 38.40 4.18
6710 7794 2.436292 ACCGACTCTCGTCCCTCG 60.436 66.667 0.00 0.00 38.40 4.63
6711 7795 2.408241 CCACCGACTCTCGTCCCTC 61.408 68.421 0.00 0.00 38.40 4.30
6712 7796 2.361357 CCACCGACTCTCGTCCCT 60.361 66.667 0.00 0.00 38.40 4.20
6713 7797 4.131088 GCCACCGACTCTCGTCCC 62.131 72.222 0.00 0.00 38.40 4.46
6714 7798 3.063084 AGCCACCGACTCTCGTCC 61.063 66.667 0.00 0.00 38.40 4.79
6715 7799 1.863662 TTCAGCCACCGACTCTCGTC 61.864 60.000 0.00 0.00 38.40 4.20
6716 7800 1.461091 TTTCAGCCACCGACTCTCGT 61.461 55.000 0.00 0.00 38.40 4.18
6717 7801 0.319555 TTTTCAGCCACCGACTCTCG 60.320 55.000 0.00 0.00 40.07 4.04
6718 7802 1.878953 TTTTTCAGCCACCGACTCTC 58.121 50.000 0.00 0.00 0.00 3.20
6735 7819 8.707449 TGTATACCCTCGTTGTATCCTATTTTT 58.293 33.333 0.00 0.00 31.60 1.94
6736 7820 8.253867 TGTATACCCTCGTTGTATCCTATTTT 57.746 34.615 0.00 0.00 31.60 1.82
6737 7821 7.844493 TGTATACCCTCGTTGTATCCTATTT 57.156 36.000 0.00 0.00 31.60 1.40
6738 7822 7.894364 AGATGTATACCCTCGTTGTATCCTATT 59.106 37.037 0.00 0.00 31.60 1.73
6739 7823 7.411808 AGATGTATACCCTCGTTGTATCCTAT 58.588 38.462 0.00 0.00 31.60 2.57
6740 7824 6.787170 AGATGTATACCCTCGTTGTATCCTA 58.213 40.000 0.00 0.00 31.60 2.94
6741 7825 5.642165 AGATGTATACCCTCGTTGTATCCT 58.358 41.667 0.00 0.00 31.60 3.24
6742 7826 5.711036 AGAGATGTATACCCTCGTTGTATCC 59.289 44.000 13.43 0.00 31.60 2.59
6743 7827 6.402334 CGAGAGATGTATACCCTCGTTGTATC 60.402 46.154 17.99 6.13 41.02 2.24
6744 7828 5.411977 CGAGAGATGTATACCCTCGTTGTAT 59.588 44.000 17.99 0.00 41.02 2.29
6745 7829 4.753610 CGAGAGATGTATACCCTCGTTGTA 59.246 45.833 17.99 0.00 41.02 2.41
6746 7830 3.564644 CGAGAGATGTATACCCTCGTTGT 59.435 47.826 17.99 4.69 41.02 3.32
6747 7831 3.813724 TCGAGAGATGTATACCCTCGTTG 59.186 47.826 21.90 13.98 44.73 4.10
6748 7832 4.082665 TCGAGAGATGTATACCCTCGTT 57.917 45.455 21.90 8.10 44.73 3.85
6749 7833 3.766068 TCGAGAGATGTATACCCTCGT 57.234 47.619 21.90 11.03 44.73 4.18
6750 7834 4.695928 TCATTCGAGAGATGTATACCCTCG 59.304 45.833 19.20 19.20 45.50 4.63
6751 7835 6.767524 ATCATTCGAGAGATGTATACCCTC 57.232 41.667 12.10 12.10 41.60 4.30
6752 7836 7.546250 AAATCATTCGAGAGATGTATACCCT 57.454 36.000 0.00 0.00 41.60 4.34
6753 7837 8.608844 AAAAATCATTCGAGAGATGTATACCC 57.391 34.615 0.00 0.00 41.60 3.69
6790 7874 0.026285 CAAACGGATTGGATCGCGTC 59.974 55.000 5.77 2.75 35.94 5.19
6791 7875 2.086510 CAAACGGATTGGATCGCGT 58.913 52.632 5.77 0.00 37.64 6.01
6792 7876 4.974468 CAAACGGATTGGATCGCG 57.026 55.556 0.00 0.00 35.27 5.87
6799 7883 2.623535 TCATCGTACCCAAACGGATTG 58.376 47.619 0.00 0.00 43.05 2.67
6800 7884 3.004862 GTTCATCGTACCCAAACGGATT 58.995 45.455 0.00 0.00 43.05 3.01
6801 7885 2.624636 GTTCATCGTACCCAAACGGAT 58.375 47.619 0.00 0.00 43.05 4.18
6802 7886 1.338011 GGTTCATCGTACCCAAACGGA 60.338 52.381 0.00 0.00 43.05 4.69
6803 7887 1.081094 GGTTCATCGTACCCAAACGG 58.919 55.000 0.00 0.00 43.05 4.44
6810 7894 0.248621 CGTACCGGGTTCATCGTACC 60.249 60.000 4.31 0.00 34.82 3.34
6811 7895 0.248621 CCGTACCGGGTTCATCGTAC 60.249 60.000 4.31 0.00 44.15 3.67
6812 7896 2.105984 CCGTACCGGGTTCATCGTA 58.894 57.895 4.31 0.00 44.15 3.43
6813 7897 2.887360 CCGTACCGGGTTCATCGT 59.113 61.111 4.31 0.00 44.15 3.73
6825 7909 2.620115 TCCTCGATTCATGGTACCGTAC 59.380 50.000 6.23 0.00 0.00 3.67
6826 7910 2.934887 TCCTCGATTCATGGTACCGTA 58.065 47.619 6.23 0.00 0.00 4.02
6827 7911 1.771565 TCCTCGATTCATGGTACCGT 58.228 50.000 7.57 3.49 0.00 4.83
6828 7912 2.159156 TGTTCCTCGATTCATGGTACCG 60.159 50.000 7.57 0.00 0.00 4.02
6829 7913 3.195661 GTGTTCCTCGATTCATGGTACC 58.804 50.000 4.43 4.43 0.00 3.34
6830 7914 3.857052 TGTGTTCCTCGATTCATGGTAC 58.143 45.455 0.00 0.00 0.00 3.34
6831 7915 3.513912 ACTGTGTTCCTCGATTCATGGTA 59.486 43.478 0.00 0.00 0.00 3.25
6832 7916 2.303022 ACTGTGTTCCTCGATTCATGGT 59.697 45.455 0.00 0.00 0.00 3.55
6833 7917 2.977914 ACTGTGTTCCTCGATTCATGG 58.022 47.619 0.00 0.00 0.00 3.66
6834 7918 4.692625 AGAAACTGTGTTCCTCGATTCATG 59.307 41.667 0.00 0.00 0.00 3.07
6835 7919 4.692625 CAGAAACTGTGTTCCTCGATTCAT 59.307 41.667 0.00 0.00 0.00 2.57
6836 7920 4.058124 CAGAAACTGTGTTCCTCGATTCA 58.942 43.478 0.00 0.00 0.00 2.57
6837 7921 4.307432 TCAGAAACTGTGTTCCTCGATTC 58.693 43.478 0.00 0.00 32.61 2.52
6838 7922 4.336889 TCAGAAACTGTGTTCCTCGATT 57.663 40.909 0.00 0.00 32.61 3.34
6839 7923 4.039245 TCTTCAGAAACTGTGTTCCTCGAT 59.961 41.667 0.00 0.00 32.61 3.59
6840 7924 3.383505 TCTTCAGAAACTGTGTTCCTCGA 59.616 43.478 0.00 0.00 32.61 4.04
6841 7925 3.717707 TCTTCAGAAACTGTGTTCCTCG 58.282 45.455 0.00 0.00 32.61 4.63
6842 7926 4.025647 CGTTCTTCAGAAACTGTGTTCCTC 60.026 45.833 0.00 0.00 35.58 3.71
6843 7927 3.871594 CGTTCTTCAGAAACTGTGTTCCT 59.128 43.478 0.00 0.00 35.58 3.36
6844 7928 3.869246 TCGTTCTTCAGAAACTGTGTTCC 59.131 43.478 0.00 0.00 35.58 3.62
6845 7929 4.548346 CGTCGTTCTTCAGAAACTGTGTTC 60.548 45.833 0.00 0.00 35.58 3.18
6846 7930 3.306166 CGTCGTTCTTCAGAAACTGTGTT 59.694 43.478 0.00 0.00 35.58 3.32
6847 7931 2.858344 CGTCGTTCTTCAGAAACTGTGT 59.142 45.455 0.00 0.00 35.58 3.72
6848 7932 3.061139 GTCGTCGTTCTTCAGAAACTGTG 60.061 47.826 0.00 0.00 35.58 3.66
6849 7933 3.114065 GTCGTCGTTCTTCAGAAACTGT 58.886 45.455 0.00 0.00 35.58 3.55
6850 7934 3.372954 AGTCGTCGTTCTTCAGAAACTG 58.627 45.455 0.00 0.00 35.58 3.16
6851 7935 3.712091 AGTCGTCGTTCTTCAGAAACT 57.288 42.857 0.00 0.00 35.58 2.66
6852 7936 4.032558 ACAAAGTCGTCGTTCTTCAGAAAC 59.967 41.667 0.00 0.00 35.58 2.78
6853 7937 4.032445 CACAAAGTCGTCGTTCTTCAGAAA 59.968 41.667 0.00 0.00 35.58 2.52
6854 7938 3.550275 CACAAAGTCGTCGTTCTTCAGAA 59.450 43.478 0.00 0.00 0.00 3.02
6855 7939 3.113322 CACAAAGTCGTCGTTCTTCAGA 58.887 45.455 0.00 0.00 0.00 3.27
6856 7940 3.061139 GTCACAAAGTCGTCGTTCTTCAG 60.061 47.826 0.00 0.00 0.00 3.02
6857 7941 2.855963 GTCACAAAGTCGTCGTTCTTCA 59.144 45.455 0.00 0.00 0.00 3.02
6858 7942 2.098021 CGTCACAAAGTCGTCGTTCTTC 60.098 50.000 0.00 0.00 0.00 2.87
6859 7943 1.850441 CGTCACAAAGTCGTCGTTCTT 59.150 47.619 0.00 0.00 0.00 2.52
6860 7944 1.474017 CGTCACAAAGTCGTCGTTCT 58.526 50.000 0.00 0.00 0.00 3.01
6861 7945 0.501435 CCGTCACAAAGTCGTCGTTC 59.499 55.000 0.00 0.00 0.00 3.95
6862 7946 0.179129 ACCGTCACAAAGTCGTCGTT 60.179 50.000 0.00 0.00 0.00 3.85
6863 7947 0.593263 GACCGTCACAAAGTCGTCGT 60.593 55.000 0.00 0.00 0.00 4.34
6864 7948 0.593008 TGACCGTCACAAAGTCGTCG 60.593 55.000 0.00 0.00 33.09 5.12
6865 7949 1.129326 CTGACCGTCACAAAGTCGTC 58.871 55.000 0.00 0.00 33.09 4.20
6866 7950 0.874607 GCTGACCGTCACAAAGTCGT 60.875 55.000 0.00 0.00 33.09 4.34
6867 7951 0.874175 TGCTGACCGTCACAAAGTCG 60.874 55.000 0.00 0.00 33.09 4.18
6868 7952 1.512926 ATGCTGACCGTCACAAAGTC 58.487 50.000 0.00 0.00 0.00 3.01
6869 7953 1.873591 GAATGCTGACCGTCACAAAGT 59.126 47.619 0.00 0.00 0.00 2.66
6870 7954 1.197721 GGAATGCTGACCGTCACAAAG 59.802 52.381 0.00 0.00 0.00 2.77
6871 7955 1.202758 AGGAATGCTGACCGTCACAAA 60.203 47.619 0.00 0.00 0.00 2.83
6872 7956 0.396435 AGGAATGCTGACCGTCACAA 59.604 50.000 0.00 0.00 0.00 3.33
6873 7957 0.396435 AAGGAATGCTGACCGTCACA 59.604 50.000 0.00 1.94 0.00 3.58
6874 7958 0.798776 CAAGGAATGCTGACCGTCAC 59.201 55.000 0.00 0.00 0.00 3.67
6875 7959 3.231734 CAAGGAATGCTGACCGTCA 57.768 52.632 0.29 0.29 0.00 4.35
6885 7969 4.038402 GGGATCCATTAACAGCAAGGAATG 59.962 45.833 15.23 0.00 31.17 2.67
6886 7970 4.078980 AGGGATCCATTAACAGCAAGGAAT 60.079 41.667 15.23 0.00 31.17 3.01
6887 7971 3.269381 AGGGATCCATTAACAGCAAGGAA 59.731 43.478 15.23 0.00 31.17 3.36
6888 7972 2.852449 AGGGATCCATTAACAGCAAGGA 59.148 45.455 15.23 0.00 0.00 3.36
6889 7973 3.303351 AGGGATCCATTAACAGCAAGG 57.697 47.619 15.23 0.00 0.00 3.61
6890 7974 3.181483 GCAAGGGATCCATTAACAGCAAG 60.181 47.826 12.07 0.00 0.00 4.01
6891 7975 2.760092 GCAAGGGATCCATTAACAGCAA 59.240 45.455 12.07 0.00 0.00 3.91
6892 7976 2.291475 TGCAAGGGATCCATTAACAGCA 60.291 45.455 12.07 14.09 0.00 4.41
6893 7977 2.378038 TGCAAGGGATCCATTAACAGC 58.622 47.619 12.07 11.53 0.00 4.40
6894 7978 5.603170 AATTGCAAGGGATCCATTAACAG 57.397 39.130 12.07 0.23 0.00 3.16
6895 7979 7.418827 CCATTAATTGCAAGGGATCCATTAACA 60.419 37.037 12.07 10.46 30.83 2.41
6896 7980 6.930722 CCATTAATTGCAAGGGATCCATTAAC 59.069 38.462 12.07 7.82 30.83 2.01
6897 7981 6.843333 TCCATTAATTGCAAGGGATCCATTAA 59.157 34.615 12.07 12.37 33.61 1.40
6898 7982 6.267471 GTCCATTAATTGCAAGGGATCCATTA 59.733 38.462 12.07 3.65 40.25 1.90
6899 7983 5.070847 GTCCATTAATTGCAAGGGATCCATT 59.929 40.000 15.23 10.59 40.25 3.16
6900 7984 4.590222 GTCCATTAATTGCAAGGGATCCAT 59.410 41.667 15.23 2.55 40.25 3.41
6901 7985 3.960102 GTCCATTAATTGCAAGGGATCCA 59.040 43.478 15.23 0.00 40.25 3.41
6902 7986 4.218312 AGTCCATTAATTGCAAGGGATCC 58.782 43.478 4.94 1.92 40.25 3.36
6903 7987 6.299141 TCTAGTCCATTAATTGCAAGGGATC 58.701 40.000 4.94 2.80 40.25 3.36
6904 7988 6.266131 TCTAGTCCATTAATTGCAAGGGAT 57.734 37.500 4.94 0.00 40.25 3.85
6905 7989 5.397899 CCTCTAGTCCATTAATTGCAAGGGA 60.398 44.000 4.94 3.97 36.08 4.20
6906 7990 4.823989 CCTCTAGTCCATTAATTGCAAGGG 59.176 45.833 4.94 1.48 0.00 3.95
6907 7991 5.684704 TCCTCTAGTCCATTAATTGCAAGG 58.315 41.667 4.94 0.00 0.00 3.61
6908 7992 7.050377 TCTTCCTCTAGTCCATTAATTGCAAG 58.950 38.462 4.94 0.00 0.00 4.01
6909 7993 6.957631 TCTTCCTCTAGTCCATTAATTGCAA 58.042 36.000 0.00 0.00 0.00 4.08
6910 7994 6.560003 TCTTCCTCTAGTCCATTAATTGCA 57.440 37.500 0.00 0.00 0.00 4.08
6911 7995 6.018669 CGTTCTTCCTCTAGTCCATTAATTGC 60.019 42.308 0.00 0.00 0.00 3.56
6912 7996 7.265673 TCGTTCTTCCTCTAGTCCATTAATTG 58.734 38.462 0.00 0.00 0.00 2.32
6913 7997 7.342284 TCTCGTTCTTCCTCTAGTCCATTAATT 59.658 37.037 0.00 0.00 0.00 1.40
6914 7998 6.834451 TCTCGTTCTTCCTCTAGTCCATTAAT 59.166 38.462 0.00 0.00 0.00 1.40
6915 7999 6.185511 TCTCGTTCTTCCTCTAGTCCATTAA 58.814 40.000 0.00 0.00 0.00 1.40
6916 8000 5.752650 TCTCGTTCTTCCTCTAGTCCATTA 58.247 41.667 0.00 0.00 0.00 1.90
6917 8001 4.601084 TCTCGTTCTTCCTCTAGTCCATT 58.399 43.478 0.00 0.00 0.00 3.16
6918 8002 4.237976 TCTCGTTCTTCCTCTAGTCCAT 57.762 45.455 0.00 0.00 0.00 3.41
6919 8003 3.715638 TCTCGTTCTTCCTCTAGTCCA 57.284 47.619 0.00 0.00 0.00 4.02
6920 8004 4.011698 ACTTCTCGTTCTTCCTCTAGTCC 58.988 47.826 0.00 0.00 0.00 3.85
6921 8005 4.095334 GGACTTCTCGTTCTTCCTCTAGTC 59.905 50.000 0.00 0.00 0.00 2.59
6922 8006 4.011698 GGACTTCTCGTTCTTCCTCTAGT 58.988 47.826 0.00 0.00 0.00 2.57
6923 8007 4.266714 AGGACTTCTCGTTCTTCCTCTAG 58.733 47.826 0.00 0.00 30.40 2.43
6924 8008 4.304048 AGGACTTCTCGTTCTTCCTCTA 57.696 45.455 0.00 0.00 30.40 2.43
6925 8009 3.163616 AGGACTTCTCGTTCTTCCTCT 57.836 47.619 0.00 0.00 30.40 3.69
6926 8010 3.256136 TCAAGGACTTCTCGTTCTTCCTC 59.744 47.826 0.00 0.00 39.51 3.71
6927 8011 3.231818 TCAAGGACTTCTCGTTCTTCCT 58.768 45.455 0.00 0.00 39.51 3.36
6928 8012 3.256136 TCTCAAGGACTTCTCGTTCTTCC 59.744 47.826 0.00 0.00 39.51 3.46
6929 8013 4.506886 TCTCAAGGACTTCTCGTTCTTC 57.493 45.455 0.00 0.00 39.51 2.87
6930 8014 4.939052 TTCTCAAGGACTTCTCGTTCTT 57.061 40.909 0.00 0.00 42.34 2.52
6931 8015 4.939052 TTTCTCAAGGACTTCTCGTTCT 57.061 40.909 0.00 0.00 30.69 3.01
6932 8016 5.290386 TCTTTTCTCAAGGACTTCTCGTTC 58.710 41.667 0.00 0.00 0.00 3.95
6933 8017 5.277857 TCTTTTCTCAAGGACTTCTCGTT 57.722 39.130 0.00 0.00 0.00 3.85
6934 8018 4.939052 TCTTTTCTCAAGGACTTCTCGT 57.061 40.909 0.00 0.00 0.00 4.18
6935 8019 5.332656 CGTTTCTTTTCTCAAGGACTTCTCG 60.333 44.000 0.00 0.00 0.00 4.04
6936 8020 5.753921 TCGTTTCTTTTCTCAAGGACTTCTC 59.246 40.000 0.00 0.00 0.00 2.87
6937 8021 5.524281 GTCGTTTCTTTTCTCAAGGACTTCT 59.476 40.000 0.00 0.00 34.14 2.85
6938 8022 5.556570 CGTCGTTTCTTTTCTCAAGGACTTC 60.557 44.000 0.00 0.00 34.57 3.01
6939 8023 4.270325 CGTCGTTTCTTTTCTCAAGGACTT 59.730 41.667 0.00 0.00 34.57 3.01
6940 8024 3.802685 CGTCGTTTCTTTTCTCAAGGACT 59.197 43.478 0.00 0.00 34.57 3.85
6941 8025 3.059800 CCGTCGTTTCTTTTCTCAAGGAC 60.060 47.826 0.00 0.00 33.79 3.85
6942 8026 3.128349 CCGTCGTTTCTTTTCTCAAGGA 58.872 45.455 0.00 0.00 0.00 3.36
6943 8027 2.349532 GCCGTCGTTTCTTTTCTCAAGG 60.350 50.000 0.00 0.00 0.00 3.61
6944 8028 2.659291 CGCCGTCGTTTCTTTTCTCAAG 60.659 50.000 0.00 0.00 0.00 3.02
6945 8029 1.259507 CGCCGTCGTTTCTTTTCTCAA 59.740 47.619 0.00 0.00 0.00 3.02
6946 8030 0.856641 CGCCGTCGTTTCTTTTCTCA 59.143 50.000 0.00 0.00 0.00 3.27
6947 8031 3.633774 CGCCGTCGTTTCTTTTCTC 57.366 52.632 0.00 0.00 0.00 2.87
6958 8042 2.347292 GCATAATTTACTCACGCCGTCG 60.347 50.000 0.00 0.00 42.43 5.12
6959 8043 2.033151 GGCATAATTTACTCACGCCGTC 60.033 50.000 0.00 0.00 0.00 4.79
6960 8044 1.937899 GGCATAATTTACTCACGCCGT 59.062 47.619 0.00 0.00 0.00 5.68
6961 8045 2.210116 AGGCATAATTTACTCACGCCG 58.790 47.619 0.00 0.00 42.90 6.46
6962 8046 3.792124 GCAAGGCATAATTTACTCACGCC 60.792 47.826 0.00 0.00 38.36 5.68
6963 8047 3.363178 GCAAGGCATAATTTACTCACGC 58.637 45.455 0.00 0.00 0.00 5.34
6964 8048 3.063452 ACGCAAGGCATAATTTACTCACG 59.937 43.478 0.00 0.00 46.39 4.35
6965 8049 4.616181 ACGCAAGGCATAATTTACTCAC 57.384 40.909 0.00 0.00 46.39 3.51
6966 8050 5.637006 AAACGCAAGGCATAATTTACTCA 57.363 34.783 0.00 0.00 46.39 3.41
6967 8051 6.669741 GCAAAAACGCAAGGCATAATTTACTC 60.670 38.462 0.00 0.00 46.39 2.59
6968 8052 5.120053 GCAAAAACGCAAGGCATAATTTACT 59.880 36.000 0.00 0.00 46.39 2.24
6969 8053 5.120053 AGCAAAAACGCAAGGCATAATTTAC 59.880 36.000 0.00 0.00 46.39 2.01
6970 8054 5.119898 CAGCAAAAACGCAAGGCATAATTTA 59.880 36.000 0.00 0.00 46.39 1.40
6971 8055 4.064388 AGCAAAAACGCAAGGCATAATTT 58.936 34.783 0.00 0.00 46.39 1.82
6972 8056 3.432933 CAGCAAAAACGCAAGGCATAATT 59.567 39.130 0.00 0.00 46.39 1.40
6973 8057 2.995258 CAGCAAAAACGCAAGGCATAAT 59.005 40.909 0.00 0.00 46.39 1.28
6974 8058 2.223923 ACAGCAAAAACGCAAGGCATAA 60.224 40.909 0.00 0.00 46.39 1.90
6975 8059 1.339610 ACAGCAAAAACGCAAGGCATA 59.660 42.857 0.00 0.00 46.39 3.14
6976 8060 0.104671 ACAGCAAAAACGCAAGGCAT 59.895 45.000 0.00 0.00 46.39 4.40
6977 8061 0.108424 AACAGCAAAAACGCAAGGCA 60.108 45.000 0.00 0.00 46.39 4.75
6978 8062 0.301388 CAACAGCAAAAACGCAAGGC 59.699 50.000 0.00 0.00 46.39 4.35
6979 8063 0.929615 CCAACAGCAAAAACGCAAGG 59.070 50.000 0.00 0.00 46.39 3.61
6981 8065 2.468831 GATCCAACAGCAAAAACGCAA 58.531 42.857 0.00 0.00 0.00 4.85
6982 8066 1.269517 GGATCCAACAGCAAAAACGCA 60.270 47.619 6.95 0.00 0.00 5.24
6983 8067 1.000274 AGGATCCAACAGCAAAAACGC 60.000 47.619 15.82 0.00 0.00 4.84
6984 8068 2.665519 CGAGGATCCAACAGCAAAAACG 60.666 50.000 15.82 0.00 0.00 3.60
6985 8069 2.552315 TCGAGGATCCAACAGCAAAAAC 59.448 45.455 15.82 0.00 0.00 2.43
6986 8070 2.857483 TCGAGGATCCAACAGCAAAAA 58.143 42.857 15.82 0.00 0.00 1.94
6987 8071 2.552315 GTTCGAGGATCCAACAGCAAAA 59.448 45.455 15.82 0.00 0.00 2.44
6988 8072 2.151202 GTTCGAGGATCCAACAGCAAA 58.849 47.619 15.82 0.00 0.00 3.68
6989 8073 1.610624 GGTTCGAGGATCCAACAGCAA 60.611 52.381 15.82 0.00 0.00 3.91
6990 8074 0.036388 GGTTCGAGGATCCAACAGCA 60.036 55.000 15.82 0.00 0.00 4.41
6991 8075 0.250513 AGGTTCGAGGATCCAACAGC 59.749 55.000 15.82 4.47 0.00 4.40
6992 8076 1.550524 TCAGGTTCGAGGATCCAACAG 59.449 52.381 15.82 6.65 0.00 3.16
6993 8077 1.639722 TCAGGTTCGAGGATCCAACA 58.360 50.000 15.82 0.00 0.00 3.33
6994 8078 2.762535 TTCAGGTTCGAGGATCCAAC 57.237 50.000 15.82 9.70 0.00 3.77
6995 8079 2.159099 CGATTCAGGTTCGAGGATCCAA 60.159 50.000 15.82 0.00 38.88 3.53
6996 8080 1.409064 CGATTCAGGTTCGAGGATCCA 59.591 52.381 15.82 0.00 38.88 3.41
6997 8081 1.681793 TCGATTCAGGTTCGAGGATCC 59.318 52.381 2.48 2.48 40.44 3.36
7003 8087 0.456221 GCTCCTCGATTCAGGTTCGA 59.544 55.000 0.00 0.00 42.87 3.71
7004 8088 0.528684 GGCTCCTCGATTCAGGTTCG 60.529 60.000 0.00 0.00 37.94 3.95
7005 8089 0.528684 CGGCTCCTCGATTCAGGTTC 60.529 60.000 0.00 0.00 34.76 3.62
7006 8090 0.970937 TCGGCTCCTCGATTCAGGTT 60.971 55.000 0.00 0.00 34.76 3.50
7007 8091 1.379977 TCGGCTCCTCGATTCAGGT 60.380 57.895 0.00 0.00 34.76 4.00
7008 8092 1.066587 GTCGGCTCCTCGATTCAGG 59.933 63.158 0.00 0.00 41.40 3.86
7009 8093 0.248825 CAGTCGGCTCCTCGATTCAG 60.249 60.000 0.00 0.00 41.40 3.02
7010 8094 1.809869 CAGTCGGCTCCTCGATTCA 59.190 57.895 0.00 0.00 41.40 2.57
7011 8095 1.590259 GCAGTCGGCTCCTCGATTC 60.590 63.158 0.00 0.00 41.40 2.52
7012 8096 2.496817 GCAGTCGGCTCCTCGATT 59.503 61.111 0.00 0.00 41.40 3.34
7013 8097 3.893763 CGCAGTCGGCTCCTCGAT 61.894 66.667 0.00 0.00 41.40 3.59
7030 8114 1.492720 GATGAAGATTCGGCGTCTCC 58.507 55.000 6.85 0.00 0.00 3.71
7031 8115 1.124462 CGATGAAGATTCGGCGTCTC 58.876 55.000 6.85 5.01 33.05 3.36
7032 8116 0.738975 TCGATGAAGATTCGGCGTCT 59.261 50.000 6.85 0.00 37.22 4.18
7033 8117 1.556564 TTCGATGAAGATTCGGCGTC 58.443 50.000 6.85 0.00 37.22 5.19
7034 8118 2.128035 GATTCGATGAAGATTCGGCGT 58.872 47.619 6.85 0.00 37.22 5.68
7035 8119 1.123217 CGATTCGATGAAGATTCGGCG 59.877 52.381 0.00 0.00 39.14 6.46
7036 8120 2.128035 ACGATTCGATGAAGATTCGGC 58.872 47.619 13.95 0.00 43.84 5.54
7037 8121 4.380087 CAGTACGATTCGATGAAGATTCGG 59.620 45.833 13.95 0.00 43.84 4.30
7038 8122 5.205565 TCAGTACGATTCGATGAAGATTCG 58.794 41.667 13.95 8.94 44.58 3.34
7039 8123 7.148885 GGATTCAGTACGATTCGATGAAGATTC 60.149 40.741 13.95 12.64 33.84 2.52
7040 8124 6.642950 GGATTCAGTACGATTCGATGAAGATT 59.357 38.462 13.95 5.62 33.84 2.40
7041 8125 6.153067 GGATTCAGTACGATTCGATGAAGAT 58.847 40.000 13.95 6.24 33.84 2.40
7042 8126 5.520632 GGATTCAGTACGATTCGATGAAGA 58.479 41.667 13.95 1.36 33.84 2.87
7043 8127 4.380087 CGGATTCAGTACGATTCGATGAAG 59.620 45.833 13.95 5.29 35.67 3.02
7044 8128 4.035909 TCGGATTCAGTACGATTCGATGAA 59.964 41.667 13.95 17.83 38.54 2.57
7045 8129 3.562557 TCGGATTCAGTACGATTCGATGA 59.437 43.478 13.95 10.63 38.54 2.92
7046 8130 3.664486 GTCGGATTCAGTACGATTCGATG 59.336 47.826 13.95 8.49 46.68 3.84
7047 8131 3.304525 GGTCGGATTCAGTACGATTCGAT 60.305 47.826 13.95 0.00 46.68 3.59
7048 8132 2.032550 GGTCGGATTCAGTACGATTCGA 59.967 50.000 13.95 6.31 46.68 3.71
7049 8133 2.033049 AGGTCGGATTCAGTACGATTCG 59.967 50.000 4.14 4.14 46.68 3.34
7050 8134 3.630101 GAGGTCGGATTCAGTACGATTC 58.370 50.000 0.00 0.00 46.68 2.52
7051 8135 2.033049 CGAGGTCGGATTCAGTACGATT 59.967 50.000 0.00 0.00 46.68 3.34
7052 8136 1.602851 CGAGGTCGGATTCAGTACGAT 59.397 52.381 0.00 0.00 46.68 3.73
7053 8137 1.012086 CGAGGTCGGATTCAGTACGA 58.988 55.000 0.00 0.00 42.00 3.43
7054 8138 0.731417 ACGAGGTCGGATTCAGTACG 59.269 55.000 4.13 0.00 44.95 3.67
7055 8139 2.479219 GGAACGAGGTCGGATTCAGTAC 60.479 54.545 4.13 0.00 44.95 2.73
7056 8140 1.747355 GGAACGAGGTCGGATTCAGTA 59.253 52.381 4.13 0.00 44.95 2.74
7057 8141 0.531200 GGAACGAGGTCGGATTCAGT 59.469 55.000 4.13 0.00 44.95 3.41
7058 8142 0.179108 GGGAACGAGGTCGGATTCAG 60.179 60.000 4.13 0.00 44.95 3.02
7059 8143 1.895238 GGGAACGAGGTCGGATTCA 59.105 57.895 4.13 0.00 44.95 2.57
7060 8144 4.829588 GGGAACGAGGTCGGATTC 57.170 61.111 4.13 0.00 44.95 2.52
7072 8156 2.601562 CGGAATCGGATTCGGGAAC 58.398 57.895 23.25 10.70 40.17 3.62
7083 8167 1.269569 TGATTCATCGACCCGGAATCG 60.270 52.381 18.79 18.79 46.17 3.34
7084 8168 2.526304 TGATTCATCGACCCGGAATC 57.474 50.000 0.73 17.35 44.43 2.52
7085 8169 2.434336 TCTTGATTCATCGACCCGGAAT 59.566 45.455 0.73 0.00 34.16 3.01
7086 8170 1.828595 TCTTGATTCATCGACCCGGAA 59.171 47.619 0.73 0.00 0.00 4.30
7087 8171 1.480789 TCTTGATTCATCGACCCGGA 58.519 50.000 0.73 0.00 0.00 5.14
7088 8172 2.408050 GATCTTGATTCATCGACCCGG 58.592 52.381 0.00 0.00 0.00 5.73
7089 8173 2.054363 CGATCTTGATTCATCGACCCG 58.946 52.381 2.70 0.96 43.83 5.28
7090 8174 3.312828 CTCGATCTTGATTCATCGACCC 58.687 50.000 6.73 0.00 44.56 4.46
7091 8175 3.312828 CCTCGATCTTGATTCATCGACC 58.687 50.000 6.73 0.00 44.56 4.79
7092 8176 3.004839 TCCCTCGATCTTGATTCATCGAC 59.995 47.826 6.73 0.00 44.56 4.20
7093 8177 3.004839 GTCCCTCGATCTTGATTCATCGA 59.995 47.826 9.71 9.71 46.63 3.59
7094 8178 3.312828 GTCCCTCGATCTTGATTCATCG 58.687 50.000 2.47 2.47 42.72 3.84
7095 8179 3.312828 CGTCCCTCGATCTTGATTCATC 58.687 50.000 0.00 0.00 42.86 2.92
7096 8180 2.036475 CCGTCCCTCGATCTTGATTCAT 59.964 50.000 0.00 0.00 42.86 2.57
7097 8181 1.409064 CCGTCCCTCGATCTTGATTCA 59.591 52.381 0.00 0.00 42.86 2.57
7098 8182 1.870167 GCCGTCCCTCGATCTTGATTC 60.870 57.143 0.00 0.00 42.86 2.52
7099 8183 0.105039 GCCGTCCCTCGATCTTGATT 59.895 55.000 0.00 0.00 42.86 2.57
7100 8184 1.742768 GCCGTCCCTCGATCTTGAT 59.257 57.895 0.00 0.00 42.86 2.57
7101 8185 2.423898 GGCCGTCCCTCGATCTTGA 61.424 63.158 0.00 0.00 42.86 3.02
7102 8186 1.107538 TAGGCCGTCCCTCGATCTTG 61.108 60.000 0.00 0.00 44.96 3.02
7103 8187 1.108132 GTAGGCCGTCCCTCGATCTT 61.108 60.000 0.00 0.00 44.96 2.40
7104 8188 1.528776 GTAGGCCGTCCCTCGATCT 60.529 63.158 0.00 0.00 44.96 2.75
7105 8189 2.562876 GGTAGGCCGTCCCTCGATC 61.563 68.421 0.00 0.00 44.96 3.69
7106 8190 2.521224 GGTAGGCCGTCCCTCGAT 60.521 66.667 0.00 0.00 44.96 3.59
7116 8200 3.258228 AAACGGGGAACGGTAGGCC 62.258 63.158 0.00 0.00 45.59 5.19
7117 8201 1.742880 GAAACGGGGAACGGTAGGC 60.743 63.158 0.00 0.00 45.59 3.93
7118 8202 1.078918 GGAAACGGGGAACGGTAGG 60.079 63.158 0.00 0.00 45.59 3.18
7119 8203 4.604114 GGAAACGGGGAACGGTAG 57.396 61.111 0.00 0.00 45.59 3.18
7130 8214 5.632347 CTATAAACCATAGTAGCCGGAAACG 59.368 44.000 5.05 0.00 41.81 3.60
7131 8215 5.407691 GCTATAAACCATAGTAGCCGGAAAC 59.592 44.000 5.05 1.02 39.17 2.78
7132 8216 5.306160 AGCTATAAACCATAGTAGCCGGAAA 59.694 40.000 5.05 0.00 40.21 3.13
7133 8217 4.836736 AGCTATAAACCATAGTAGCCGGAA 59.163 41.667 5.05 0.00 40.21 4.30
7134 8218 4.413760 AGCTATAAACCATAGTAGCCGGA 58.586 43.478 5.05 0.00 40.21 5.14
7135 8219 4.463186 AGAGCTATAAACCATAGTAGCCGG 59.537 45.833 0.00 0.00 40.21 6.13
7136 8220 5.646577 AGAGCTATAAACCATAGTAGCCG 57.353 43.478 0.00 0.00 40.21 5.52
7137 8221 6.647067 CACAAGAGCTATAAACCATAGTAGCC 59.353 42.308 0.00 0.00 40.21 3.93
7138 8222 7.382759 GTCACAAGAGCTATAAACCATAGTAGC 59.617 40.741 0.00 0.00 39.17 3.58
7139 8223 8.634444 AGTCACAAGAGCTATAAACCATAGTAG 58.366 37.037 0.00 0.00 39.17 2.57
7140 8224 8.534954 AGTCACAAGAGCTATAAACCATAGTA 57.465 34.615 0.00 0.00 39.17 1.82
7141 8225 7.418025 GGAGTCACAAGAGCTATAAACCATAGT 60.418 40.741 0.00 0.00 39.17 2.12
7142 8226 6.926272 GGAGTCACAAGAGCTATAAACCATAG 59.074 42.308 0.00 0.00 39.84 2.23
7143 8227 6.183360 GGGAGTCACAAGAGCTATAAACCATA 60.183 42.308 0.00 0.00 0.00 2.74
7144 8228 5.396884 GGGAGTCACAAGAGCTATAAACCAT 60.397 44.000 0.00 0.00 0.00 3.55
7145 8229 4.081087 GGGAGTCACAAGAGCTATAAACCA 60.081 45.833 0.00 0.00 0.00 3.67
7146 8230 4.081087 TGGGAGTCACAAGAGCTATAAACC 60.081 45.833 0.00 0.00 0.00 3.27
7147 8231 5.086104 TGGGAGTCACAAGAGCTATAAAC 57.914 43.478 0.00 0.00 0.00 2.01
7148 8232 5.248477 ACTTGGGAGTCACAAGAGCTATAAA 59.752 40.000 36.07 0.00 46.27 1.40
7149 8233 4.777896 ACTTGGGAGTCACAAGAGCTATAA 59.222 41.667 36.07 0.00 46.27 0.98
7150 8234 4.160439 CACTTGGGAGTCACAAGAGCTATA 59.840 45.833 36.07 0.24 46.27 1.31
7269 8353 1.951602 GCAATCCATAGCTCACATGCA 59.048 47.619 0.00 0.00 34.99 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.