Multiple sequence alignment - TraesCS3A01G207900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G207900 chr3A 100.000 4407 0 0 1 4407 366636140 366631734 0.000000e+00 8139.0
1 TraesCS3A01G207900 chr3A 92.063 756 56 3 1 752 67316616 67315861 0.000000e+00 1061.0
2 TraesCS3A01G207900 chr3A 86.579 909 111 10 3345 4245 47062522 47061617 0.000000e+00 992.0
3 TraesCS3A01G207900 chr3A 87.344 640 66 11 3345 3971 9829662 9829025 0.000000e+00 719.0
4 TraesCS3A01G207900 chr3B 96.644 1162 32 5 783 1943 369283963 369285118 0.000000e+00 1923.0
5 TraesCS3A01G207900 chr3B 95.491 998 39 4 2111 3104 369285127 369286122 0.000000e+00 1589.0
6 TraesCS3A01G207900 chr3B 87.772 736 81 8 3506 4236 603796345 603797076 0.000000e+00 852.0
7 TraesCS3A01G207900 chr3B 94.475 181 10 0 3097 3277 369286339 369286519 3.360000e-71 279.0
8 TraesCS3A01G207900 chr3B 90.710 183 15 2 1933 2114 755376096 755376277 4.400000e-60 243.0
9 TraesCS3A01G207900 chr3B 96.970 33 1 0 3292 3324 369286548 369286580 6.160000e-04 56.5
10 TraesCS3A01G207900 chr3D 94.887 1017 33 6 2114 3121 280281644 280280638 0.000000e+00 1572.0
11 TraesCS3A01G207900 chr3D 95.710 909 17 9 754 1645 280283203 280282300 0.000000e+00 1443.0
12 TraesCS3A01G207900 chr3D 86.874 899 99 13 3345 4234 240516626 240515738 0.000000e+00 989.0
13 TraesCS3A01G207900 chr3D 86.059 538 64 7 232 764 461330146 461329615 6.400000e-158 568.0
14 TraesCS3A01G207900 chr3D 94.662 281 15 0 1 281 477006422 477006142 1.880000e-118 436.0
15 TraesCS3A01G207900 chr3D 98.726 157 2 0 1645 1801 280282273 280282117 3.360000e-71 279.0
16 TraesCS3A01G207900 chr3D 95.513 156 6 1 1793 1947 280281804 280281649 9.470000e-62 248.0
17 TraesCS3A01G207900 chr3D 83.969 262 36 5 3515 3771 589664018 589664278 3.400000e-61 246.0
18 TraesCS3A01G207900 chr3D 83.969 262 36 5 3515 3771 589707712 589707972 3.400000e-61 246.0
19 TraesCS3A01G207900 chr3D 98.551 138 2 0 3115 3252 280279658 280279521 1.220000e-60 244.0
20 TraesCS3A01G207900 chr3D 91.525 177 13 2 1939 2114 46712945 46712770 4.400000e-60 243.0
21 TraesCS3A01G207900 chr6A 92.400 750 53 3 1 747 33288710 33289458 0.000000e+00 1066.0
22 TraesCS3A01G207900 chr6A 81.791 681 91 15 3537 4201 386316480 386315817 1.390000e-149 540.0
23 TraesCS3A01G207900 chr6A 84.848 297 38 6 3343 3634 386316634 386316340 4.310000e-75 292.0
24 TraesCS3A01G207900 chr6A 82.712 295 47 4 3344 3634 385751035 385750741 4.370000e-65 259.0
25 TraesCS3A01G207900 chr6A 79.167 264 39 12 3505 3765 54121213 54120963 7.580000e-38 169.0
26 TraesCS3A01G207900 chr2D 92.074 757 56 3 4 757 466686781 466686026 0.000000e+00 1062.0
27 TraesCS3A01G207900 chr2D 86.725 806 83 18 3342 4137 25746777 25747568 0.000000e+00 874.0
28 TraesCS3A01G207900 chr6D 91.953 758 55 4 1 752 16681219 16681976 0.000000e+00 1057.0
29 TraesCS3A01G207900 chr6D 90.710 183 15 2 1933 2114 293273713 293273894 4.400000e-60 243.0
30 TraesCS3A01G207900 chr6D 82.828 99 15 2 3780 3877 327021720 327021623 2.180000e-13 87.9
31 TraesCS3A01G207900 chr4D 92.021 752 54 5 4 750 505190968 505190218 0.000000e+00 1051.0
32 TraesCS3A01G207900 chr4D 89.960 757 41 12 1 752 25659055 25659781 0.000000e+00 944.0
33 TraesCS3A01G207900 chr4D 85.965 399 51 3 3502 3898 47525145 47524750 5.270000e-114 422.0
34 TraesCS3A01G207900 chr4D 90.164 183 16 2 1933 2114 25740218 25740399 2.050000e-58 237.0
35 TraesCS3A01G207900 chr4D 90.960 177 14 2 1939 2114 144738814 144738639 2.050000e-58 237.0
36 TraesCS3A01G207900 chr1D 87.667 900 101 9 3343 4233 373416221 373417119 0.000000e+00 1038.0
37 TraesCS3A01G207900 chr1D 79.564 367 58 13 3881 4233 440868740 440869103 3.400000e-61 246.0
38 TraesCS3A01G207900 chr1D 91.525 177 13 2 1939 2114 244450885 244450710 4.400000e-60 243.0
39 TraesCS3A01G207900 chr1D 78.533 368 60 15 3881 4233 355670653 355670290 1.600000e-54 224.0
40 TraesCS3A01G207900 chr7D 91.223 752 64 2 1 750 26613181 26612430 0.000000e+00 1022.0
41 TraesCS3A01G207900 chr7D 86.249 909 101 12 3342 4237 227560818 227559921 0.000000e+00 965.0
42 TraesCS3A01G207900 chr7D 86.014 572 63 10 3343 3909 509620428 509619869 8.160000e-167 597.0
43 TraesCS3A01G207900 chr7D 86.857 525 52 7 3345 3869 564659075 564658568 4.940000e-159 571.0
44 TraesCS3A01G207900 chr2B 86.496 896 112 7 3345 4233 20030591 20031484 0.000000e+00 976.0
45 TraesCS3A01G207900 chr6B 86.429 899 98 12 3345 4233 426817798 426818682 0.000000e+00 963.0
46 TraesCS3A01G207900 chr6B 83.853 706 88 12 3537 4232 426456040 426456729 0.000000e+00 649.0
47 TraesCS3A01G207900 chr6B 83.714 700 88 12 3544 4233 426456995 426457678 4.810000e-179 638.0
48 TraesCS3A01G207900 chr5D 89.592 759 72 6 1 754 430539710 430538954 0.000000e+00 957.0
49 TraesCS3A01G207900 chr5D 89.592 490 48 2 3345 3831 360978852 360979341 1.740000e-173 619.0
50 TraesCS3A01G207900 chr5D 90.710 183 15 2 1933 2114 109769002 109769183 4.400000e-60 243.0
51 TraesCS3A01G207900 chr5D 91.061 179 14 2 1933 2110 275709474 275709651 1.580000e-59 241.0
52 TraesCS3A01G207900 chr5D 80.303 264 37 12 3883 4133 361569412 361569673 7.530000e-43 185.0
53 TraesCS3A01G207900 chr5D 85.714 77 6 5 3883 3956 268877809 268877735 4.730000e-10 76.8
54 TraesCS3A01G207900 chr7A 87.183 710 84 7 3533 4237 237527003 237526296 0.000000e+00 800.0
55 TraesCS3A01G207900 chr1A 86.678 608 62 11 3345 3945 337017546 337018141 0.000000e+00 656.0
56 TraesCS3A01G207900 chr1A 81.265 411 61 9 3537 3945 558030741 558030345 7.110000e-83 318.0
57 TraesCS3A01G207900 chr1A 83.086 337 43 6 3345 3678 558030881 558030556 1.200000e-75 294.0
58 TraesCS3A01G207900 chr1A 77.737 274 44 9 3972 4231 381319559 381319289 7.630000e-33 152.0
59 TraesCS3A01G207900 chr1A 72.576 361 64 27 3885 4237 460328212 460328545 7.850000e-13 86.1
60 TraesCS3A01G207900 chr1B 88.060 536 60 3 3340 3871 319250869 319251404 2.240000e-177 632.0
61 TraesCS3A01G207900 chr1B 84.505 555 64 13 3537 4081 452366548 452366006 3.020000e-146 529.0
62 TraesCS3A01G207900 chr1B 86.444 450 57 3 3345 3791 563122212 563122660 1.420000e-134 490.0
63 TraesCS3A01G207900 chr1B 86.989 269 33 2 3967 4233 319251725 319251993 7.160000e-78 302.0
64 TraesCS3A01G207900 chr5A 91.061 179 14 2 1933 2110 370564728 370564905 1.580000e-59 241.0
65 TraesCS3A01G207900 chr4B 84.236 203 30 2 3515 3716 599434732 599434531 3.480000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G207900 chr3A 366631734 366636140 4406 True 8139.000 8139 100.0000 1 4407 1 chr3A.!!$R4 4406
1 TraesCS3A01G207900 chr3A 67315861 67316616 755 True 1061.000 1061 92.0630 1 752 1 chr3A.!!$R3 751
2 TraesCS3A01G207900 chr3A 47061617 47062522 905 True 992.000 992 86.5790 3345 4245 1 chr3A.!!$R2 900
3 TraesCS3A01G207900 chr3A 9829025 9829662 637 True 719.000 719 87.3440 3345 3971 1 chr3A.!!$R1 626
4 TraesCS3A01G207900 chr3B 369283963 369286580 2617 False 961.875 1923 95.8950 783 3324 4 chr3B.!!$F3 2541
5 TraesCS3A01G207900 chr3B 603796345 603797076 731 False 852.000 852 87.7720 3506 4236 1 chr3B.!!$F1 730
6 TraesCS3A01G207900 chr3D 240515738 240516626 888 True 989.000 989 86.8740 3345 4234 1 chr3D.!!$R2 889
7 TraesCS3A01G207900 chr3D 280279521 280283203 3682 True 757.200 1572 96.6774 754 3252 5 chr3D.!!$R5 2498
8 TraesCS3A01G207900 chr3D 461329615 461330146 531 True 568.000 568 86.0590 232 764 1 chr3D.!!$R3 532
9 TraesCS3A01G207900 chr6A 33288710 33289458 748 False 1066.000 1066 92.4000 1 747 1 chr6A.!!$F1 746
10 TraesCS3A01G207900 chr6A 386315817 386316634 817 True 416.000 540 83.3195 3343 4201 2 chr6A.!!$R3 858
11 TraesCS3A01G207900 chr2D 466686026 466686781 755 True 1062.000 1062 92.0740 4 757 1 chr2D.!!$R1 753
12 TraesCS3A01G207900 chr2D 25746777 25747568 791 False 874.000 874 86.7250 3342 4137 1 chr2D.!!$F1 795
13 TraesCS3A01G207900 chr6D 16681219 16681976 757 False 1057.000 1057 91.9530 1 752 1 chr6D.!!$F1 751
14 TraesCS3A01G207900 chr4D 505190218 505190968 750 True 1051.000 1051 92.0210 4 750 1 chr4D.!!$R3 746
15 TraesCS3A01G207900 chr4D 25659055 25659781 726 False 944.000 944 89.9600 1 752 1 chr4D.!!$F1 751
16 TraesCS3A01G207900 chr1D 373416221 373417119 898 False 1038.000 1038 87.6670 3343 4233 1 chr1D.!!$F1 890
17 TraesCS3A01G207900 chr7D 26612430 26613181 751 True 1022.000 1022 91.2230 1 750 1 chr7D.!!$R1 749
18 TraesCS3A01G207900 chr7D 227559921 227560818 897 True 965.000 965 86.2490 3342 4237 1 chr7D.!!$R2 895
19 TraesCS3A01G207900 chr7D 509619869 509620428 559 True 597.000 597 86.0140 3343 3909 1 chr7D.!!$R3 566
20 TraesCS3A01G207900 chr7D 564658568 564659075 507 True 571.000 571 86.8570 3345 3869 1 chr7D.!!$R4 524
21 TraesCS3A01G207900 chr2B 20030591 20031484 893 False 976.000 976 86.4960 3345 4233 1 chr2B.!!$F1 888
22 TraesCS3A01G207900 chr6B 426817798 426818682 884 False 963.000 963 86.4290 3345 4233 1 chr6B.!!$F1 888
23 TraesCS3A01G207900 chr6B 426456040 426457678 1638 False 643.500 649 83.7835 3537 4233 2 chr6B.!!$F2 696
24 TraesCS3A01G207900 chr5D 430538954 430539710 756 True 957.000 957 89.5920 1 754 1 chr5D.!!$R2 753
25 TraesCS3A01G207900 chr7A 237526296 237527003 707 True 800.000 800 87.1830 3533 4237 1 chr7A.!!$R1 704
26 TraesCS3A01G207900 chr1A 337017546 337018141 595 False 656.000 656 86.6780 3345 3945 1 chr1A.!!$F1 600
27 TraesCS3A01G207900 chr1A 558030345 558030881 536 True 306.000 318 82.1755 3345 3945 2 chr1A.!!$R2 600
28 TraesCS3A01G207900 chr1B 452366006 452366548 542 True 529.000 529 84.5050 3537 4081 1 chr1B.!!$R1 544
29 TraesCS3A01G207900 chr1B 319250869 319251993 1124 False 467.000 632 87.5245 3340 4233 2 chr1B.!!$F2 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 502 0.651031 GTCGCGAGAAACCTAATGGC 59.349 55.0 10.24 0.0 45.01 4.40 F
1851 2235 0.892755 TGTAGGGTTGGAGCTACGTG 59.107 55.0 0.00 0.0 0.00 4.49 F
2121 2508 1.098050 GAGGGGTACATGCTTGCTTG 58.902 55.0 6.90 6.9 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2486 0.035056 GCAAGCATGTACCCCTCAGT 60.035 55.0 0.0 0.0 0.00 3.41 R
2756 3149 0.247736 ATCAGTTGAGCAGGTCGTCC 59.752 55.0 0.0 0.0 0.00 4.79 R
3879 6475 0.533755 CCCCTGCATTTCTAGGCGAG 60.534 60.0 0.0 0.0 32.67 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 204 2.280308 AGTCATGGTAGCCCCCTTAA 57.720 50.000 0.00 0.00 0.00 1.85
211 213 3.324268 GGTAGCCCCCTTAAGATACTGTC 59.676 52.174 3.36 0.00 0.00 3.51
269 273 1.290203 AGTTGCCTACGAATGATGCG 58.710 50.000 0.00 0.00 0.00 4.73
316 321 2.879646 TGTCCCACATGGTTTTTACGTC 59.120 45.455 0.00 0.00 34.77 4.34
319 324 2.291190 CCCACATGGTTTTTACGTCGTT 59.709 45.455 1.78 0.00 0.00 3.85
411 419 6.478512 AAATTGCCTCAACTAGAACCAAAA 57.521 33.333 0.00 0.00 0.00 2.44
418 426 6.294508 GCCTCAACTAGAACCAAAATTGCTTA 60.295 38.462 0.00 0.00 0.00 3.09
419 427 7.084486 CCTCAACTAGAACCAAAATTGCTTAC 58.916 38.462 0.00 0.00 0.00 2.34
439 454 9.123709 TGCTTACAAAAATTCATCGAAACATAC 57.876 29.630 0.00 0.00 0.00 2.39
487 502 0.651031 GTCGCGAGAAACCTAATGGC 59.349 55.000 10.24 0.00 45.01 4.40
495 510 3.404899 AGAAACCTAATGGCGAAAACGA 58.595 40.909 0.00 0.00 36.63 3.85
529 544 7.383687 TCTGACACTCGGTTCAAAAGTTATAT 58.616 34.615 0.00 0.00 0.00 0.86
530 545 7.876068 TCTGACACTCGGTTCAAAAGTTATATT 59.124 33.333 0.00 0.00 0.00 1.28
572 590 6.430308 GGAATAATGTGAGATGACATCAGCAT 59.570 38.462 17.57 13.86 35.43 3.79
607 625 2.845659 TCCTTAGTGACCATCCACCAT 58.154 47.619 0.00 0.00 37.76 3.55
617 635 1.372582 CATCCACCATCTGACAACGG 58.627 55.000 0.00 0.00 0.00 4.44
668 686 6.567891 GCCGTTTTCTTAGCAGTTTTATCACT 60.568 38.462 0.00 0.00 0.00 3.41
693 711 1.749063 AGATGCGTAGTCATCGGACAA 59.251 47.619 0.00 0.00 46.80 3.18
698 716 1.129998 CGTAGTCATCGGACAACTCGT 59.870 52.381 0.00 0.00 46.80 4.18
710 728 3.478724 AACTCGTGTGTGCGCTCGA 62.479 57.895 9.73 10.11 34.06 4.04
899 919 2.047844 CGACCACTCCACTGCCTG 60.048 66.667 0.00 0.00 0.00 4.85
1303 1323 1.480954 GGAGTCCCATACGAGCAAAGA 59.519 52.381 0.00 0.00 0.00 2.52
1351 1371 2.711542 AGAAATTAGACACTTGGGGCG 58.288 47.619 0.00 0.00 0.00 6.13
1389 1424 5.345202 CAGTCTGAATGAAAGATTTTGCTGC 59.655 40.000 0.00 0.00 0.00 5.25
1453 1488 2.614134 AGGAGAGCACCTTGTACTCT 57.386 50.000 0.00 0.00 38.79 3.24
1570 1605 1.447314 CAGTCCCGGAAAGGTACGC 60.447 63.158 0.73 0.00 38.74 4.42
1822 2206 9.084164 AGAAAACTGTGCTAGTATAACAATACG 57.916 33.333 0.00 0.00 39.18 3.06
1834 2218 2.743636 ACAATACGTGCTAGTGCTGT 57.256 45.000 0.00 0.00 40.48 4.40
1851 2235 0.892755 TGTAGGGTTGGAGCTACGTG 59.107 55.000 0.00 0.00 0.00 4.49
1866 2250 1.563924 ACGTGGGTGACAGGCTATTA 58.436 50.000 0.00 0.00 38.50 0.98
1941 2328 3.070159 TCAAGCCAGCAGAGGTATGTATC 59.930 47.826 0.00 0.00 0.00 2.24
1947 2334 5.105187 GCCAGCAGAGGTATGTATCATCATA 60.105 44.000 0.00 0.00 0.00 2.15
1948 2335 6.336566 CCAGCAGAGGTATGTATCATCATAC 58.663 44.000 7.92 7.92 45.27 2.39
1949 2336 6.154192 CCAGCAGAGGTATGTATCATCATACT 59.846 42.308 13.84 3.83 45.30 2.12
1950 2337 7.257003 CAGCAGAGGTATGTATCATCATACTC 58.743 42.308 13.84 10.32 45.30 2.59
1951 2338 6.379703 AGCAGAGGTATGTATCATCATACTCC 59.620 42.308 13.84 8.07 45.30 3.85
1952 2339 6.406400 GCAGAGGTATGTATCATCATACTCCC 60.406 46.154 13.84 6.33 45.30 4.30
1953 2340 6.894654 CAGAGGTATGTATCATCATACTCCCT 59.105 42.308 13.84 5.75 45.30 4.20
1954 2341 7.068103 CAGAGGTATGTATCATCATACTCCCTC 59.932 44.444 13.84 10.03 45.30 4.30
1955 2342 6.198639 AGGTATGTATCATCATACTCCCTCC 58.801 44.000 13.84 0.78 45.30 4.30
1956 2343 5.958380 GGTATGTATCATCATACTCCCTCCA 59.042 44.000 13.84 0.00 45.30 3.86
1957 2344 6.613271 GGTATGTATCATCATACTCCCTCCAT 59.387 42.308 13.84 0.00 45.30 3.41
1958 2345 7.126421 GGTATGTATCATCATACTCCCTCCATT 59.874 40.741 13.84 0.00 45.30 3.16
1959 2346 6.611613 TGTATCATCATACTCCCTCCATTC 57.388 41.667 0.00 0.00 36.55 2.67
1960 2347 5.485353 TGTATCATCATACTCCCTCCATTCC 59.515 44.000 0.00 0.00 36.55 3.01
1961 2348 4.219392 TCATCATACTCCCTCCATTCCT 57.781 45.455 0.00 0.00 0.00 3.36
1962 2349 5.354184 TCATCATACTCCCTCCATTCCTA 57.646 43.478 0.00 0.00 0.00 2.94
1963 2350 5.726560 TCATCATACTCCCTCCATTCCTAA 58.273 41.667 0.00 0.00 0.00 2.69
1964 2351 6.150332 TCATCATACTCCCTCCATTCCTAAA 58.850 40.000 0.00 0.00 0.00 1.85
1965 2352 6.794493 TCATCATACTCCCTCCATTCCTAAAT 59.206 38.462 0.00 0.00 0.00 1.40
1966 2353 7.961431 TCATCATACTCCCTCCATTCCTAAATA 59.039 37.037 0.00 0.00 0.00 1.40
1967 2354 8.776119 CATCATACTCCCTCCATTCCTAAATAT 58.224 37.037 0.00 0.00 0.00 1.28
1968 2355 8.757307 TCATACTCCCTCCATTCCTAAATATT 57.243 34.615 0.00 0.00 0.00 1.28
1969 2356 9.182642 TCATACTCCCTCCATTCCTAAATATTT 57.817 33.333 5.89 5.89 0.00 1.40
1970 2357 9.236006 CATACTCCCTCCATTCCTAAATATTTG 57.764 37.037 11.05 1.40 0.00 2.32
1971 2358 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
1972 2359 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
1973 2360 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
1974 2361 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
1975 2362 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
1976 2363 8.981659 CCCTCCATTCCTAAATATTTGTCTTTT 58.018 33.333 11.05 0.00 0.00 2.27
1993 2380 8.770438 TTGTCTTTTTAAAGATTGCAACAAGT 57.230 26.923 0.00 0.00 45.83 3.16
1994 2381 8.183830 TGTCTTTTTAAAGATTGCAACAAGTG 57.816 30.769 0.00 0.00 45.83 3.16
1995 2382 8.031864 TGTCTTTTTAAAGATTGCAACAAGTGA 58.968 29.630 0.00 0.00 45.83 3.41
1996 2383 8.321005 GTCTTTTTAAAGATTGCAACAAGTGAC 58.679 33.333 0.00 0.00 45.83 3.67
1997 2384 8.250332 TCTTTTTAAAGATTGCAACAAGTGACT 58.750 29.630 0.00 0.00 39.95 3.41
1998 2385 9.515020 CTTTTTAAAGATTGCAACAAGTGACTA 57.485 29.630 0.00 0.00 38.28 2.59
2004 2391 9.448438 AAAGATTGCAACAAGTGACTATATACA 57.552 29.630 0.00 0.00 0.00 2.29
2005 2392 9.448438 AAGATTGCAACAAGTGACTATATACAA 57.552 29.630 0.00 0.00 0.00 2.41
2006 2393 9.448438 AGATTGCAACAAGTGACTATATACAAA 57.552 29.630 0.00 0.00 0.00 2.83
2007 2394 9.708222 GATTGCAACAAGTGACTATATACAAAG 57.292 33.333 0.00 0.00 0.00 2.77
2008 2395 7.072177 TGCAACAAGTGACTATATACAAAGC 57.928 36.000 0.00 0.00 0.00 3.51
2009 2396 6.652900 TGCAACAAGTGACTATATACAAAGCA 59.347 34.615 0.00 0.00 0.00 3.91
2010 2397 7.174080 TGCAACAAGTGACTATATACAAAGCAA 59.826 33.333 0.00 0.00 0.00 3.91
2011 2398 8.020819 GCAACAAGTGACTATATACAAAGCAAA 58.979 33.333 0.00 0.00 0.00 3.68
2012 2399 9.891828 CAACAAGTGACTATATACAAAGCAAAA 57.108 29.630 0.00 0.00 0.00 2.44
2013 2400 9.893305 AACAAGTGACTATATACAAAGCAAAAC 57.107 29.630 0.00 0.00 0.00 2.43
2014 2401 8.227791 ACAAGTGACTATATACAAAGCAAAACG 58.772 33.333 0.00 0.00 0.00 3.60
2015 2402 8.440059 CAAGTGACTATATACAAAGCAAAACGA 58.560 33.333 0.00 0.00 0.00 3.85
2016 2403 8.186178 AGTGACTATATACAAAGCAAAACGAG 57.814 34.615 0.00 0.00 0.00 4.18
2017 2404 7.817962 AGTGACTATATACAAAGCAAAACGAGT 59.182 33.333 0.00 0.00 0.00 4.18
2018 2405 7.898309 GTGACTATATACAAAGCAAAACGAGTG 59.102 37.037 0.00 0.00 0.00 3.51
2019 2406 7.815549 TGACTATATACAAAGCAAAACGAGTGA 59.184 33.333 0.00 0.00 0.00 3.41
2020 2407 8.542497 ACTATATACAAAGCAAAACGAGTGAA 57.458 30.769 0.00 0.00 0.00 3.18
2021 2408 9.162764 ACTATATACAAAGCAAAACGAGTGAAT 57.837 29.630 0.00 0.00 0.00 2.57
2022 2409 9.638300 CTATATACAAAGCAAAACGAGTGAATC 57.362 33.333 0.00 0.00 0.00 2.52
2023 2410 4.900635 ACAAAGCAAAACGAGTGAATCT 57.099 36.364 0.00 0.00 0.00 2.40
2024 2411 7.667043 ATACAAAGCAAAACGAGTGAATCTA 57.333 32.000 0.00 0.00 0.00 1.98
2025 2412 5.748592 ACAAAGCAAAACGAGTGAATCTAC 58.251 37.500 0.00 0.00 0.00 2.59
2026 2413 5.295787 ACAAAGCAAAACGAGTGAATCTACA 59.704 36.000 0.00 0.00 0.00 2.74
2027 2414 4.992381 AGCAAAACGAGTGAATCTACAC 57.008 40.909 0.00 0.00 40.60 2.90
2074 2461 9.793259 ATCCGTATGTGATAGTCCATTTAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
2075 2462 9.621629 TCCGTATGTGATAGTCCATTTAAAATT 57.378 29.630 0.00 0.00 0.00 1.82
2107 2494 8.581253 AAGACAAATATTTAGAAACTGAGGGG 57.419 34.615 0.00 0.00 0.00 4.79
2108 2495 7.699878 AGACAAATATTTAGAAACTGAGGGGT 58.300 34.615 0.00 0.00 0.00 4.95
2109 2496 8.832735 AGACAAATATTTAGAAACTGAGGGGTA 58.167 33.333 0.00 0.00 0.00 3.69
2121 2508 1.098050 GAGGGGTACATGCTTGCTTG 58.902 55.000 6.90 6.90 0.00 4.01
2166 2553 5.334569 GCAATTCAGACTGCCTTTAAACGTA 60.335 40.000 0.00 0.00 32.18 3.57
2284 2677 2.810439 TCTTTTGGCGGGAAAACATG 57.190 45.000 0.00 0.00 0.00 3.21
2756 3149 1.154016 CGGTCAGTACTGCACCTCG 60.154 63.158 27.39 18.49 32.39 4.63
2921 3317 9.661187 GTTGATTCTGTAATAGATTGCTTCATG 57.339 33.333 0.00 0.00 34.80 3.07
2976 3375 6.434340 ACTTAAAGCATCTTCCCCTAAAACTG 59.566 38.462 0.00 0.00 0.00 3.16
2986 3385 8.404107 TCTTCCCCTAAAACTGAACATTTTAG 57.596 34.615 9.33 9.33 44.16 1.85
3012 3411 6.608002 ACCACCTCCTACAAATTAACACAAAA 59.392 34.615 0.00 0.00 0.00 2.44
3015 3414 8.977505 CACCTCCTACAAATTAACACAAAATTG 58.022 33.333 0.00 0.00 0.00 2.32
3065 3464 5.601313 AGTTGTAGTCTAAGGTCACCAAAGA 59.399 40.000 0.00 0.00 0.00 2.52
3070 3469 6.936968 AGTCTAAGGTCACCAAAGATTAGT 57.063 37.500 0.00 0.00 0.00 2.24
3278 4887 4.579454 TTGTGCATACGATACTACCTCC 57.421 45.455 0.00 0.00 0.00 4.30
3279 4888 2.551032 TGTGCATACGATACTACCTCCG 59.449 50.000 0.00 0.00 0.00 4.63
3280 4889 1.538512 TGCATACGATACTACCTCCGC 59.461 52.381 0.00 0.00 0.00 5.54
3281 4890 1.135460 GCATACGATACTACCTCCGCC 60.135 57.143 0.00 0.00 0.00 6.13
3284 4893 1.700955 ACGATACTACCTCCGCCAAT 58.299 50.000 0.00 0.00 0.00 3.16
3285 4894 1.340248 ACGATACTACCTCCGCCAATG 59.660 52.381 0.00 0.00 0.00 2.82
3286 4895 1.797025 GATACTACCTCCGCCAATGC 58.203 55.000 0.00 0.00 0.00 3.56
3287 4896 1.070134 GATACTACCTCCGCCAATGCA 59.930 52.381 0.00 0.00 37.32 3.96
3288 4897 1.128200 TACTACCTCCGCCAATGCAT 58.872 50.000 0.00 0.00 37.32 3.96
3289 4898 1.128200 ACTACCTCCGCCAATGCATA 58.872 50.000 0.00 0.00 37.32 3.14
3292 4901 2.949177 ACCTCCGCCAATGCATAATA 57.051 45.000 0.00 0.00 37.32 0.98
3334 4957 9.196552 GATTAGTATTTTAGATGCATTTTGGGC 57.803 33.333 0.00 0.00 0.00 5.36
3335 4958 5.591099 AGTATTTTAGATGCATTTTGGGCG 58.409 37.500 0.00 0.00 0.00 6.13
3336 4959 2.292103 TTTAGATGCATTTTGGGCGC 57.708 45.000 0.00 0.00 0.00 6.53
3337 4960 1.473258 TTAGATGCATTTTGGGCGCT 58.527 45.000 7.64 0.00 0.00 5.92
3338 4961 0.740149 TAGATGCATTTTGGGCGCTG 59.260 50.000 7.64 0.00 0.00 5.18
3339 4962 2.125431 ATGCATTTTGGGCGCTGC 60.125 55.556 7.64 8.96 35.21 5.25
3340 4963 2.567564 GATGCATTTTGGGCGCTGCT 62.568 55.000 16.57 4.17 35.66 4.24
3341 4964 1.321805 ATGCATTTTGGGCGCTGCTA 61.322 50.000 16.57 5.42 35.66 3.49
3342 4965 1.517039 GCATTTTGGGCGCTGCTAC 60.517 57.895 7.64 0.00 0.00 3.58
3343 4966 1.226379 CATTTTGGGCGCTGCTACG 60.226 57.895 7.64 0.00 0.00 3.51
3401 5024 2.849880 TGTTGCAGAAACAAGTCAGC 57.150 45.000 0.00 0.00 45.85 4.26
3432 5055 3.826754 CGACTGAGCTGCGCCCTA 61.827 66.667 4.18 0.00 0.00 3.53
3433 5056 2.818132 GACTGAGCTGCGCCCTAT 59.182 61.111 4.18 0.00 0.00 2.57
3492 5121 2.806237 GGCGCGTAGGAGCTACTT 59.194 61.111 2.22 0.00 39.15 2.24
3496 5125 1.599916 GCGCGTAGGAGCTACTTTAGG 60.600 57.143 2.22 0.00 35.06 2.69
3507 5136 5.662456 GAGCTACTTTAGGTCCGAAATCTT 58.338 41.667 0.00 0.00 45.14 2.40
3512 5141 5.968254 ACTTTAGGTCCGAAATCTTCTCTC 58.032 41.667 0.00 0.00 0.00 3.20
3514 5143 2.821437 AGGTCCGAAATCTTCTCTCCA 58.179 47.619 0.00 0.00 0.00 3.86
3515 5144 3.173965 AGGTCCGAAATCTTCTCTCCAA 58.826 45.455 0.00 0.00 0.00 3.53
3517 5146 4.226168 AGGTCCGAAATCTTCTCTCCAATT 59.774 41.667 0.00 0.00 0.00 2.32
3518 5147 4.944317 GGTCCGAAATCTTCTCTCCAATTT 59.056 41.667 0.00 0.00 0.00 1.82
3519 5148 5.065346 GGTCCGAAATCTTCTCTCCAATTTC 59.935 44.000 0.00 0.00 35.67 2.17
3520 5149 5.065346 GTCCGAAATCTTCTCTCCAATTTCC 59.935 44.000 0.00 0.00 35.62 3.13
3524 5153 5.786121 AATCTTCTCTCCAATTTCCTCCA 57.214 39.130 0.00 0.00 0.00 3.86
3531 5160 4.655963 TCTCCAATTTCCTCCAACAAGAG 58.344 43.478 0.00 0.00 0.00 2.85
3532 5161 3.157087 TCCAATTTCCTCCAACAAGAGC 58.843 45.455 0.00 0.00 32.17 4.09
3533 5162 3.160269 CCAATTTCCTCCAACAAGAGCT 58.840 45.455 0.00 0.00 32.17 4.09
3534 5163 3.575687 CCAATTTCCTCCAACAAGAGCTT 59.424 43.478 0.00 0.00 32.17 3.74
3535 5164 4.039609 CCAATTTCCTCCAACAAGAGCTTT 59.960 41.667 0.00 0.00 32.17 3.51
3570 5202 9.240734 ACTTTCTCATCTCTAATTTCTTGCAAT 57.759 29.630 0.00 0.00 0.00 3.56
3642 6227 5.365314 TCCCCTGTTGCAAAAACTCTTATTT 59.635 36.000 0.00 0.00 0.00 1.40
3745 6332 5.065731 CCCTTGCTACAAAAATTGCAACAAA 59.934 36.000 0.00 0.00 39.98 2.83
3751 6338 7.495279 TGCTACAAAAATTGCAACAAAATCTCT 59.505 29.630 0.00 0.00 32.12 3.10
3825 6420 1.134521 AGAAACTTGGAGTGTGCGTGA 60.135 47.619 0.00 0.00 0.00 4.35
3849 6445 3.743911 CGTAAAGTGTTGTGATGTGGCTA 59.256 43.478 0.00 0.00 0.00 3.93
4025 6847 4.547367 CCCGCCGCCCTCCTAAAG 62.547 72.222 0.00 0.00 0.00 1.85
4043 6865 2.906458 CCAGAAGCATCGCCCTCT 59.094 61.111 0.00 0.00 0.00 3.69
4052 6874 0.820226 CATCGCCCTCTCAGAGACAA 59.180 55.000 2.09 0.00 0.00 3.18
4071 6893 1.374758 GAGTCAACGGAGGCCAGTG 60.375 63.158 5.01 0.00 0.00 3.66
4102 6925 6.156748 TGCTTATCCGAAACAATAGCTCTA 57.843 37.500 0.00 0.00 0.00 2.43
4185 7008 0.243907 CGATCCAACGGACACAGAGT 59.756 55.000 0.00 0.00 32.98 3.24
4237 7060 5.714047 CTGAAGGTAAGCTTTTCCCATTTC 58.286 41.667 3.20 8.66 0.00 2.17
4241 7064 5.583932 AGGTAAGCTTTTCCCATTTCAGAT 58.416 37.500 3.20 0.00 0.00 2.90
4243 7066 7.182060 AGGTAAGCTTTTCCCATTTCAGATAA 58.818 34.615 3.20 0.00 0.00 1.75
4244 7067 7.122799 AGGTAAGCTTTTCCCATTTCAGATAAC 59.877 37.037 3.20 0.00 0.00 1.89
4245 7068 5.921962 AGCTTTTCCCATTTCAGATAACC 57.078 39.130 0.00 0.00 0.00 2.85
4246 7069 5.583932 AGCTTTTCCCATTTCAGATAACCT 58.416 37.500 0.00 0.00 0.00 3.50
4247 7070 6.019108 AGCTTTTCCCATTTCAGATAACCTT 58.981 36.000 0.00 0.00 0.00 3.50
4248 7071 7.182060 AGCTTTTCCCATTTCAGATAACCTTA 58.818 34.615 0.00 0.00 0.00 2.69
4249 7072 7.122799 AGCTTTTCCCATTTCAGATAACCTTAC 59.877 37.037 0.00 0.00 0.00 2.34
4250 7073 7.122799 GCTTTTCCCATTTCAGATAACCTTACT 59.877 37.037 0.00 0.00 0.00 2.24
4251 7074 8.950007 TTTTCCCATTTCAGATAACCTTACTT 57.050 30.769 0.00 0.00 0.00 2.24
4252 7075 8.950007 TTTCCCATTTCAGATAACCTTACTTT 57.050 30.769 0.00 0.00 0.00 2.66
4253 7076 8.950007 TTCCCATTTCAGATAACCTTACTTTT 57.050 30.769 0.00 0.00 0.00 2.27
4254 7077 8.950007 TCCCATTTCAGATAACCTTACTTTTT 57.050 30.769 0.00 0.00 0.00 1.94
4284 7107 9.993454 ATGTAAGACACATATAGTAGTACTCGA 57.007 33.333 5.96 0.00 46.34 4.04
4285 7108 9.993454 TGTAAGACACATATAGTAGTACTCGAT 57.007 33.333 5.96 0.00 30.04 3.59
4287 7110 7.815398 AGACACATATAGTAGTACTCGATCG 57.185 40.000 9.36 9.36 0.00 3.69
4288 7111 6.812656 AGACACATATAGTAGTACTCGATCGG 59.187 42.308 16.41 8.65 0.00 4.18
4289 7112 6.462500 ACACATATAGTAGTACTCGATCGGT 58.538 40.000 16.41 14.22 0.00 4.69
4290 7113 6.933521 ACACATATAGTAGTACTCGATCGGTT 59.066 38.462 16.41 4.90 0.00 4.44
4291 7114 7.095313 ACACATATAGTAGTACTCGATCGGTTG 60.095 40.741 16.41 8.58 0.00 3.77
4292 7115 6.370994 ACATATAGTAGTACTCGATCGGTTGG 59.629 42.308 16.41 6.06 0.00 3.77
4293 7116 2.996631 AGTAGTACTCGATCGGTTGGT 58.003 47.619 16.41 11.45 0.00 3.67
4294 7117 2.681848 AGTAGTACTCGATCGGTTGGTG 59.318 50.000 16.41 1.86 0.00 4.17
4295 7118 1.542492 AGTACTCGATCGGTTGGTGT 58.458 50.000 16.41 7.50 0.00 4.16
4296 7119 1.201647 AGTACTCGATCGGTTGGTGTG 59.798 52.381 16.41 0.00 0.00 3.82
4297 7120 1.068055 GTACTCGATCGGTTGGTGTGT 60.068 52.381 16.41 4.59 0.00 3.72
4298 7121 1.250328 ACTCGATCGGTTGGTGTGTA 58.750 50.000 16.41 0.00 0.00 2.90
4299 7122 1.068055 ACTCGATCGGTTGGTGTGTAC 60.068 52.381 16.41 0.00 0.00 2.90
4300 7123 0.960286 TCGATCGGTTGGTGTGTACA 59.040 50.000 16.41 0.00 0.00 2.90
4301 7124 1.340568 TCGATCGGTTGGTGTGTACAA 59.659 47.619 16.41 0.00 0.00 2.41
4302 7125 1.458064 CGATCGGTTGGTGTGTACAAC 59.542 52.381 7.38 0.00 45.60 3.32
4303 7126 1.458064 GATCGGTTGGTGTGTACAACG 59.542 52.381 0.00 0.00 46.89 4.10
4304 7127 0.530211 TCGGTTGGTGTGTACAACGG 60.530 55.000 0.00 8.86 46.89 4.44
4305 7128 1.650363 GGTTGGTGTGTACAACGGC 59.350 57.895 0.00 0.00 46.89 5.68
4306 7129 1.650363 GTTGGTGTGTACAACGGCC 59.350 57.895 0.00 0.00 38.83 6.13
4307 7130 1.888172 TTGGTGTGTACAACGGCCG 60.888 57.895 26.86 26.86 36.03 6.13
4308 7131 2.029369 GGTGTGTACAACGGCCGA 59.971 61.111 35.90 6.02 0.00 5.54
4309 7132 2.025418 GGTGTGTACAACGGCCGAG 61.025 63.158 35.90 25.60 0.00 4.63
4310 7133 2.356553 TGTGTACAACGGCCGAGC 60.357 61.111 35.90 16.38 0.00 5.03
4311 7134 2.356553 GTGTACAACGGCCGAGCA 60.357 61.111 35.90 18.81 0.00 4.26
4312 7135 1.740296 GTGTACAACGGCCGAGCAT 60.740 57.895 35.90 16.48 0.00 3.79
4313 7136 1.004320 TGTACAACGGCCGAGCATT 60.004 52.632 35.90 13.43 0.00 3.56
4314 7137 1.017177 TGTACAACGGCCGAGCATTC 61.017 55.000 35.90 17.03 0.00 2.67
4315 7138 0.739813 GTACAACGGCCGAGCATTCT 60.740 55.000 35.90 3.57 0.00 2.40
4316 7139 0.459585 TACAACGGCCGAGCATTCTC 60.460 55.000 35.90 0.00 35.99 2.87
4317 7140 1.448540 CAACGGCCGAGCATTCTCT 60.449 57.895 35.90 1.64 37.19 3.10
4318 7141 1.448540 AACGGCCGAGCATTCTCTG 60.449 57.895 35.90 0.00 37.19 3.35
4319 7142 2.172483 AACGGCCGAGCATTCTCTGT 62.172 55.000 35.90 0.00 37.19 3.41
4320 7143 1.448540 CGGCCGAGCATTCTCTGTT 60.449 57.895 24.07 0.00 37.19 3.16
4321 7144 1.424493 CGGCCGAGCATTCTCTGTTC 61.424 60.000 24.07 0.00 37.19 3.18
4322 7145 1.092345 GGCCGAGCATTCTCTGTTCC 61.092 60.000 0.00 0.00 37.19 3.62
4323 7146 1.092345 GCCGAGCATTCTCTGTTCCC 61.092 60.000 0.00 0.00 37.19 3.97
4324 7147 0.539051 CCGAGCATTCTCTGTTCCCT 59.461 55.000 0.00 0.00 37.19 4.20
4325 7148 1.757118 CCGAGCATTCTCTGTTCCCTA 59.243 52.381 0.00 0.00 37.19 3.53
4326 7149 2.223923 CCGAGCATTCTCTGTTCCCTAG 60.224 54.545 0.00 0.00 37.19 3.02
4327 7150 2.801342 CGAGCATTCTCTGTTCCCTAGC 60.801 54.545 0.00 0.00 37.19 3.42
4328 7151 1.488393 AGCATTCTCTGTTCCCTAGCC 59.512 52.381 0.00 0.00 0.00 3.93
4329 7152 1.488393 GCATTCTCTGTTCCCTAGCCT 59.512 52.381 0.00 0.00 0.00 4.58
4330 7153 2.700897 GCATTCTCTGTTCCCTAGCCTA 59.299 50.000 0.00 0.00 0.00 3.93
4331 7154 3.244044 GCATTCTCTGTTCCCTAGCCTAG 60.244 52.174 0.00 0.00 0.00 3.02
4332 7155 2.074729 TCTCTGTTCCCTAGCCTAGC 57.925 55.000 0.00 0.00 0.00 3.42
4333 7156 1.571457 TCTCTGTTCCCTAGCCTAGCT 59.429 52.381 0.00 0.00 43.41 3.32
4334 7157 1.960689 CTCTGTTCCCTAGCCTAGCTC 59.039 57.143 0.00 0.00 40.44 4.09
4335 7158 1.044611 CTGTTCCCTAGCCTAGCTCC 58.955 60.000 0.00 0.00 40.44 4.70
4336 7159 0.755698 TGTTCCCTAGCCTAGCTCCG 60.756 60.000 0.00 0.00 40.44 4.63
4337 7160 1.833049 TTCCCTAGCCTAGCTCCGC 60.833 63.158 0.00 0.00 40.44 5.54
4338 7161 2.203567 CCCTAGCCTAGCTCCGCT 60.204 66.667 11.79 11.79 40.44 5.52
4339 7162 2.272447 CCCTAGCCTAGCTCCGCTC 61.272 68.421 10.54 0.00 40.44 5.03
4340 7163 2.272447 CCTAGCCTAGCTCCGCTCC 61.272 68.421 10.54 0.00 40.44 4.70
4341 7164 2.203509 TAGCCTAGCTCCGCTCCC 60.204 66.667 10.54 0.00 40.44 4.30
4342 7165 2.985539 CTAGCCTAGCTCCGCTCCCA 62.986 65.000 10.54 0.00 40.44 4.37
4343 7166 2.373338 TAGCCTAGCTCCGCTCCCAT 62.373 60.000 10.54 0.00 40.44 4.00
4344 7167 1.908793 GCCTAGCTCCGCTCCCATA 60.909 63.158 0.00 0.00 40.44 2.74
4345 7168 1.261238 GCCTAGCTCCGCTCCCATAT 61.261 60.000 0.00 0.00 40.44 1.78
4346 7169 0.820871 CCTAGCTCCGCTCCCATATC 59.179 60.000 0.00 0.00 40.44 1.63
4347 7170 0.453793 CTAGCTCCGCTCCCATATCG 59.546 60.000 0.00 0.00 40.44 2.92
4348 7171 1.595993 TAGCTCCGCTCCCATATCGC 61.596 60.000 0.00 0.00 40.44 4.58
4349 7172 2.262915 CTCCGCTCCCATATCGCC 59.737 66.667 0.00 0.00 0.00 5.54
4350 7173 3.633094 CTCCGCTCCCATATCGCCG 62.633 68.421 0.00 0.00 0.00 6.46
4351 7174 4.742201 CCGCTCCCATATCGCCGG 62.742 72.222 0.00 0.00 0.00 6.13
4354 7177 4.742201 CTCCCATATCGCCGGCGG 62.742 72.222 44.95 29.83 40.25 6.13
4380 7203 4.736896 GCCACCGTCGACCACCTC 62.737 72.222 10.58 0.00 0.00 3.85
4381 7204 4.065281 CCACCGTCGACCACCTCC 62.065 72.222 10.58 0.00 0.00 4.30
4382 7205 4.065281 CACCGTCGACCACCTCCC 62.065 72.222 10.58 0.00 0.00 4.30
4385 7208 3.450115 CGTCGACCACCTCCCCTC 61.450 72.222 10.58 0.00 0.00 4.30
4386 7209 3.075641 GTCGACCACCTCCCCTCC 61.076 72.222 3.51 0.00 0.00 4.30
4387 7210 4.753662 TCGACCACCTCCCCTCCG 62.754 72.222 0.00 0.00 0.00 4.63
4389 7212 3.075641 GACCACCTCCCCTCCGTC 61.076 72.222 0.00 0.00 0.00 4.79
4390 7213 4.716977 ACCACCTCCCCTCCGTCC 62.717 72.222 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 0.985760 TAGGCGGCTTTGGACCTAAA 59.014 50.000 19.76 0.00 31.85 1.85
202 204 3.982516 TCAAGGTAGGCTGACAGTATCT 58.017 45.455 3.99 2.73 0.00 1.98
211 213 5.562890 GCAACTTAGTTTTCAAGGTAGGCTG 60.563 44.000 0.00 0.00 0.00 4.85
411 419 8.586570 TGTTTCGATGAATTTTTGTAAGCAAT 57.413 26.923 0.00 0.00 34.18 3.56
607 625 0.973632 ATGTACCTGCCGTTGTCAGA 59.026 50.000 0.00 0.00 33.54 3.27
617 635 0.811616 CCTCCTTGCGATGTACCTGC 60.812 60.000 0.00 0.00 0.00 4.85
668 686 2.287608 CCGATGACTACGCATCTGCTAA 60.288 50.000 0.09 0.00 41.90 3.09
680 698 2.095415 CACACGAGTTGTCCGATGACTA 60.095 50.000 0.00 0.00 42.28 2.59
682 700 1.060713 CACACGAGTTGTCCGATGAC 58.939 55.000 0.00 0.00 42.12 3.06
693 711 3.961197 TCGAGCGCACACACGAGT 61.961 61.111 11.47 0.00 34.06 4.18
698 716 4.700365 CGGAGTCGAGCGCACACA 62.700 66.667 11.47 0.00 39.00 3.72
781 799 1.682451 GCCAGGTGCGGACCACTATA 61.682 60.000 28.90 0.00 45.98 1.31
1303 1323 2.287427 CGAGACGCTAAATCATACCGGT 60.287 50.000 13.98 13.98 0.00 5.28
1351 1371 0.321122 AGACTGCAAGCTAGGTGCAC 60.321 55.000 8.80 8.80 46.76 4.57
1389 1424 5.361857 ACCTGAGCCAATCATCCAAATTAAG 59.638 40.000 0.00 0.00 37.28 1.85
1453 1488 1.834856 CTGGACTCAGCTCTGCCCAA 61.835 60.000 0.00 0.00 33.86 4.12
1570 1605 7.225145 TGAAAATATAGAACCATAACGAACGGG 59.775 37.037 0.00 0.00 0.00 5.28
1822 2206 1.676014 CCAACCCTACAGCACTAGCAC 60.676 57.143 0.00 0.00 45.49 4.40
1834 2218 0.974010 CCCACGTAGCTCCAACCCTA 60.974 60.000 0.00 0.00 0.00 3.53
1851 2235 1.608283 GCCGATAATAGCCTGTCACCC 60.608 57.143 0.00 0.00 0.00 4.61
1941 2328 6.439636 TTTAGGAATGGAGGGAGTATGATG 57.560 41.667 0.00 0.00 0.00 3.07
1947 2334 7.129504 AGACAAATATTTAGGAATGGAGGGAGT 59.870 37.037 0.00 0.00 0.00 3.85
1948 2335 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
1949 2336 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
1950 2337 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
1967 2354 9.213799 ACTTGTTGCAATCTTTAAAAAGACAAA 57.786 25.926 0.59 0.00 46.80 2.83
1968 2355 8.655092 CACTTGTTGCAATCTTTAAAAAGACAA 58.345 29.630 0.59 5.36 46.80 3.18
1969 2356 8.031864 TCACTTGTTGCAATCTTTAAAAAGACA 58.968 29.630 0.59 0.00 46.80 3.41
1970 2357 8.321005 GTCACTTGTTGCAATCTTTAAAAAGAC 58.679 33.333 0.59 0.00 46.80 3.01
1972 2359 8.411318 AGTCACTTGTTGCAATCTTTAAAAAG 57.589 30.769 0.59 0.00 37.36 2.27
1978 2365 9.448438 TGTATATAGTCACTTGTTGCAATCTTT 57.552 29.630 0.59 0.00 0.00 2.52
1979 2366 9.448438 TTGTATATAGTCACTTGTTGCAATCTT 57.552 29.630 0.59 0.00 0.00 2.40
1980 2367 9.448438 TTTGTATATAGTCACTTGTTGCAATCT 57.552 29.630 0.59 0.00 0.00 2.40
1981 2368 9.708222 CTTTGTATATAGTCACTTGTTGCAATC 57.292 33.333 0.59 0.00 0.00 2.67
1982 2369 8.184192 GCTTTGTATATAGTCACTTGTTGCAAT 58.816 33.333 0.59 0.00 0.00 3.56
1983 2370 7.174080 TGCTTTGTATATAGTCACTTGTTGCAA 59.826 33.333 0.00 0.00 0.00 4.08
1984 2371 6.652900 TGCTTTGTATATAGTCACTTGTTGCA 59.347 34.615 0.00 0.00 0.00 4.08
1985 2372 7.072177 TGCTTTGTATATAGTCACTTGTTGC 57.928 36.000 0.00 0.00 0.00 4.17
1986 2373 9.891828 TTTTGCTTTGTATATAGTCACTTGTTG 57.108 29.630 0.00 0.00 0.00 3.33
1987 2374 9.893305 GTTTTGCTTTGTATATAGTCACTTGTT 57.107 29.630 0.00 0.00 0.00 2.83
1988 2375 8.227791 CGTTTTGCTTTGTATATAGTCACTTGT 58.772 33.333 0.00 0.00 0.00 3.16
1989 2376 8.440059 TCGTTTTGCTTTGTATATAGTCACTTG 58.560 33.333 0.00 0.00 0.00 3.16
1990 2377 8.542497 TCGTTTTGCTTTGTATATAGTCACTT 57.458 30.769 0.00 0.00 0.00 3.16
1991 2378 7.817962 ACTCGTTTTGCTTTGTATATAGTCACT 59.182 33.333 0.00 0.00 0.00 3.41
1992 2379 7.898309 CACTCGTTTTGCTTTGTATATAGTCAC 59.102 37.037 0.00 0.00 0.00 3.67
1993 2380 7.815549 TCACTCGTTTTGCTTTGTATATAGTCA 59.184 33.333 0.00 0.00 0.00 3.41
1994 2381 8.181487 TCACTCGTTTTGCTTTGTATATAGTC 57.819 34.615 0.00 0.00 0.00 2.59
1995 2382 8.542497 TTCACTCGTTTTGCTTTGTATATAGT 57.458 30.769 0.00 0.00 0.00 2.12
1996 2383 9.638300 GATTCACTCGTTTTGCTTTGTATATAG 57.362 33.333 0.00 0.00 0.00 1.31
1997 2384 9.378551 AGATTCACTCGTTTTGCTTTGTATATA 57.621 29.630 0.00 0.00 0.00 0.86
1998 2385 8.268850 AGATTCACTCGTTTTGCTTTGTATAT 57.731 30.769 0.00 0.00 0.00 0.86
1999 2386 7.667043 AGATTCACTCGTTTTGCTTTGTATA 57.333 32.000 0.00 0.00 0.00 1.47
2000 2387 6.560253 AGATTCACTCGTTTTGCTTTGTAT 57.440 33.333 0.00 0.00 0.00 2.29
2001 2388 6.480651 TGTAGATTCACTCGTTTTGCTTTGTA 59.519 34.615 0.00 0.00 0.00 2.41
2002 2389 4.900635 AGATTCACTCGTTTTGCTTTGT 57.099 36.364 0.00 0.00 0.00 2.83
2003 2390 5.621228 GTGTAGATTCACTCGTTTTGCTTTG 59.379 40.000 0.00 0.00 35.68 2.77
2004 2391 5.527582 AGTGTAGATTCACTCGTTTTGCTTT 59.472 36.000 0.00 0.00 44.07 3.51
2005 2392 5.057149 AGTGTAGATTCACTCGTTTTGCTT 58.943 37.500 0.00 0.00 44.07 3.91
2006 2393 4.632153 AGTGTAGATTCACTCGTTTTGCT 58.368 39.130 0.00 0.00 44.07 3.91
2007 2394 4.992381 AGTGTAGATTCACTCGTTTTGC 57.008 40.909 0.00 0.00 44.07 3.68
2048 2435 9.793259 ATTTTAAATGGACTATCACATACGGAT 57.207 29.630 0.00 0.00 0.00 4.18
2049 2436 9.621629 AATTTTAAATGGACTATCACATACGGA 57.378 29.630 0.00 0.00 0.00 4.69
2081 2468 9.025041 CCCCTCAGTTTCTAAATATTTGTCTTT 57.975 33.333 11.05 0.00 0.00 2.52
2082 2469 8.170730 ACCCCTCAGTTTCTAAATATTTGTCTT 58.829 33.333 11.05 0.00 0.00 3.01
2083 2470 7.699878 ACCCCTCAGTTTCTAAATATTTGTCT 58.300 34.615 11.05 0.00 0.00 3.41
2084 2471 7.939784 ACCCCTCAGTTTCTAAATATTTGTC 57.060 36.000 11.05 0.00 0.00 3.18
2085 2472 8.387813 TGTACCCCTCAGTTTCTAAATATTTGT 58.612 33.333 11.05 0.00 0.00 2.83
2086 2473 8.801882 TGTACCCCTCAGTTTCTAAATATTTG 57.198 34.615 11.05 1.65 0.00 2.32
2087 2474 9.408648 CATGTACCCCTCAGTTTCTAAATATTT 57.591 33.333 5.89 5.89 0.00 1.40
2088 2475 7.502561 GCATGTACCCCTCAGTTTCTAAATATT 59.497 37.037 0.00 0.00 0.00 1.28
2089 2476 6.998673 GCATGTACCCCTCAGTTTCTAAATAT 59.001 38.462 0.00 0.00 0.00 1.28
2090 2477 6.157994 AGCATGTACCCCTCAGTTTCTAAATA 59.842 38.462 0.00 0.00 0.00 1.40
2091 2478 5.044846 AGCATGTACCCCTCAGTTTCTAAAT 60.045 40.000 0.00 0.00 0.00 1.40
2092 2479 4.288626 AGCATGTACCCCTCAGTTTCTAAA 59.711 41.667 0.00 0.00 0.00 1.85
2093 2480 3.844211 AGCATGTACCCCTCAGTTTCTAA 59.156 43.478 0.00 0.00 0.00 2.10
2094 2481 3.450904 AGCATGTACCCCTCAGTTTCTA 58.549 45.455 0.00 0.00 0.00 2.10
2095 2482 2.269940 AGCATGTACCCCTCAGTTTCT 58.730 47.619 0.00 0.00 0.00 2.52
2096 2483 2.749621 CAAGCATGTACCCCTCAGTTTC 59.250 50.000 0.00 0.00 0.00 2.78
2097 2484 2.795329 CAAGCATGTACCCCTCAGTTT 58.205 47.619 0.00 0.00 0.00 2.66
2098 2485 1.614317 GCAAGCATGTACCCCTCAGTT 60.614 52.381 0.00 0.00 0.00 3.16
2099 2486 0.035056 GCAAGCATGTACCCCTCAGT 60.035 55.000 0.00 0.00 0.00 3.41
2100 2487 0.254178 AGCAAGCATGTACCCCTCAG 59.746 55.000 0.00 0.00 0.00 3.35
2101 2488 0.698238 AAGCAAGCATGTACCCCTCA 59.302 50.000 0.00 0.00 0.00 3.86
2102 2489 1.098050 CAAGCAAGCATGTACCCCTC 58.902 55.000 0.00 0.00 0.00 4.30
2103 2490 0.405585 ACAAGCAAGCATGTACCCCT 59.594 50.000 0.54 0.00 0.00 4.79
2104 2491 1.202348 GAACAAGCAAGCATGTACCCC 59.798 52.381 3.17 0.00 0.00 4.95
2105 2492 1.885887 TGAACAAGCAAGCATGTACCC 59.114 47.619 3.17 0.00 0.00 3.69
2106 2493 3.207474 CTGAACAAGCAAGCATGTACC 57.793 47.619 3.17 0.46 0.00 3.34
2121 2508 1.238439 TGGCTGTGCTTAAGCTGAAC 58.762 50.000 26.90 17.55 42.66 3.18
2204 2591 8.438676 CAAGTTACCTTGTAAGATCCCAATAG 57.561 38.462 0.00 0.00 42.61 1.73
2233 2625 9.674824 GCATATGGAATGATAAGAAAAGACAAG 57.325 33.333 4.56 0.00 0.00 3.16
2252 2645 4.107622 CGCCAAAAGAAAGAAGCATATGG 58.892 43.478 4.56 0.00 0.00 2.74
2284 2677 8.670804 AGTTATATAAGCGTCAACGATCATAC 57.329 34.615 6.75 0.00 43.02 2.39
2321 2714 8.572185 TCGATCACCAAGATAAAATGTGAAAAA 58.428 29.630 0.00 0.00 39.19 1.94
2756 3149 0.247736 ATCAGTTGAGCAGGTCGTCC 59.752 55.000 0.00 0.00 0.00 4.79
2921 3317 1.740025 GGCAACCAGTGAGCTGTTATC 59.260 52.381 0.00 0.00 41.02 1.75
2937 3333 4.345257 TGCTTTAAGTTTACAATGGGGCAA 59.655 37.500 0.00 0.00 0.00 4.52
2976 3375 5.801380 TGTAGGAGGTGGTCTAAAATGTTC 58.199 41.667 0.00 0.00 0.00 3.18
2986 3385 5.310451 TGTGTTAATTTGTAGGAGGTGGTC 58.690 41.667 0.00 0.00 0.00 4.02
3065 3464 8.697292 GGTGAGAAAACTATCTAGGACACTAAT 58.303 37.037 0.00 0.00 0.00 1.73
3070 3469 6.497259 ACTTGGTGAGAAAACTATCTAGGACA 59.503 38.462 0.00 0.00 0.00 4.02
3258 4867 2.551032 CGGAGGTAGTATCGTATGCACA 59.449 50.000 0.00 0.00 0.00 4.57
3266 4875 1.935300 GCATTGGCGGAGGTAGTATCG 60.935 57.143 0.00 0.00 0.00 2.92
3324 4947 1.517039 GTAGCAGCGCCCAAAATGC 60.517 57.895 2.29 6.32 38.97 3.56
3325 4948 1.226379 CGTAGCAGCGCCCAAAATG 60.226 57.895 2.29 0.00 0.00 2.32
3326 4949 3.187058 CGTAGCAGCGCCCAAAAT 58.813 55.556 2.29 0.00 0.00 1.82
3339 4962 3.264897 GTGAGCATGCGGGCGTAG 61.265 66.667 13.01 0.00 39.27 3.51
3340 4963 3.716539 GAGTGAGCATGCGGGCGTA 62.717 63.158 13.01 0.00 39.27 4.42
3353 4976 7.097342 GTTTGTTACGAGAAATAACGAGTGA 57.903 36.000 0.00 0.00 35.65 3.41
3401 5024 4.078516 GTCGGGGTCGGGTCAAGG 62.079 72.222 0.00 0.00 36.95 3.61
3492 5121 4.350245 TGGAGAGAAGATTTCGGACCTAA 58.650 43.478 0.00 0.00 34.02 2.69
3496 5125 5.065346 GGAAATTGGAGAGAAGATTTCGGAC 59.935 44.000 0.00 0.00 38.66 4.79
3498 5127 5.189180 AGGAAATTGGAGAGAAGATTTCGG 58.811 41.667 0.00 0.00 38.66 4.30
3504 5133 4.350816 TGTTGGAGGAAATTGGAGAGAAGA 59.649 41.667 0.00 0.00 0.00 2.87
3507 5136 4.350816 TCTTGTTGGAGGAAATTGGAGAGA 59.649 41.667 0.00 0.00 0.00 3.10
3512 5141 3.160269 AGCTCTTGTTGGAGGAAATTGG 58.840 45.455 0.00 0.00 34.21 3.16
3514 5143 4.651045 ACAAAGCTCTTGTTGGAGGAAATT 59.349 37.500 8.03 0.00 34.21 1.82
3515 5144 4.218312 ACAAAGCTCTTGTTGGAGGAAAT 58.782 39.130 8.03 0.00 34.21 2.17
3517 5146 3.297134 ACAAAGCTCTTGTTGGAGGAA 57.703 42.857 8.03 0.00 34.21 3.36
3518 5147 3.297134 AACAAAGCTCTTGTTGGAGGA 57.703 42.857 19.48 0.00 40.70 3.71
3524 5153 3.119495 AGTTTCGCAACAAAGCTCTTGTT 60.119 39.130 16.38 16.38 42.75 2.83
3531 5160 3.434637 TGAGAAAGTTTCGCAACAAAGC 58.565 40.909 18.22 0.00 36.53 3.51
3532 5161 5.514279 AGATGAGAAAGTTTCGCAACAAAG 58.486 37.500 23.14 0.00 42.63 2.77
3533 5162 5.296780 AGAGATGAGAAAGTTTCGCAACAAA 59.703 36.000 23.14 2.82 42.63 2.83
3534 5163 4.816385 AGAGATGAGAAAGTTTCGCAACAA 59.184 37.500 23.14 3.17 42.63 2.83
3535 5164 4.380531 AGAGATGAGAAAGTTTCGCAACA 58.619 39.130 23.14 15.24 42.63 3.33
3570 5202 4.334203 TGACTTTTCGCAACAAAGCTCTTA 59.666 37.500 0.00 0.00 35.02 2.10
3642 6227 7.833285 AGGGTCTTATTGCAAAAAGTTAGAA 57.167 32.000 1.71 0.00 0.00 2.10
3678 6263 4.728882 GCACGGCATGAGATGTCTTTTTAG 60.729 45.833 0.00 0.00 31.27 1.85
3745 6332 4.891566 GCGACACGACCAGAGATT 57.108 55.556 0.00 0.00 0.00 2.40
3825 6420 3.242936 GCCACATCACAACACTTTACGTT 60.243 43.478 0.00 0.00 0.00 3.99
3849 6445 3.560636 GGCACCACCAATACTAGACAT 57.439 47.619 0.00 0.00 38.86 3.06
3879 6475 0.533755 CCCCTGCATTTCTAGGCGAG 60.534 60.000 0.00 0.00 32.67 5.03
3912 6521 1.062198 TCCAGCAGGTATGGATGGAGA 60.062 52.381 0.00 0.00 45.23 3.71
3913 6522 1.427809 TCCAGCAGGTATGGATGGAG 58.572 55.000 0.00 0.00 45.23 3.86
3916 6529 1.269988 CGACTCCAGCAGGTATGGATG 60.270 57.143 0.00 0.00 45.64 3.51
3970 6791 2.896801 CGGGCATATCCAACGCAGC 61.897 63.158 0.00 0.00 36.21 5.25
4025 6847 2.899339 GAGGGCGATGCTTCTGGC 60.899 66.667 8.61 8.61 42.22 4.85
4034 6856 1.110442 CTTGTCTCTGAGAGGGCGAT 58.890 55.000 9.97 0.00 0.00 4.58
4043 6865 2.554462 CTCCGTTGACTCTTGTCTCTGA 59.446 50.000 0.00 0.00 43.29 3.27
4052 6874 1.534235 ACTGGCCTCCGTTGACTCT 60.534 57.895 3.32 0.00 0.00 3.24
4071 6893 1.295792 TTCGGATAAGCATTCGTGCC 58.704 50.000 0.00 0.00 34.53 5.01
4128 6951 4.717313 GAACGGCCCCGCTTTCCT 62.717 66.667 6.63 0.00 44.19 3.36
4204 7027 2.398498 CTTACCTTCAGCCGATCGATG 58.602 52.381 18.66 14.94 0.00 3.84
4209 7032 2.789409 AAAGCTTACCTTCAGCCGAT 57.211 45.000 0.00 0.00 38.09 4.18
4259 7082 9.993454 ATCGAGTACTACTATATGTGTCTTACA 57.007 33.333 0.00 0.00 44.87 2.41
4261 7084 9.351570 CGATCGAGTACTACTATATGTGTCTTA 57.648 37.037 10.26 0.00 0.00 2.10
4262 7085 7.331440 CCGATCGAGTACTACTATATGTGTCTT 59.669 40.741 18.66 0.00 0.00 3.01
4263 7086 6.812656 CCGATCGAGTACTACTATATGTGTCT 59.187 42.308 18.66 0.00 0.00 3.41
4264 7087 6.589523 ACCGATCGAGTACTACTATATGTGTC 59.410 42.308 18.66 0.00 0.00 3.67
4265 7088 6.462500 ACCGATCGAGTACTACTATATGTGT 58.538 40.000 18.66 0.00 0.00 3.72
4266 7089 6.964741 ACCGATCGAGTACTACTATATGTG 57.035 41.667 18.66 0.00 0.00 3.21
4267 7090 6.370994 CCAACCGATCGAGTACTACTATATGT 59.629 42.308 18.66 0.00 0.00 2.29
4268 7091 6.370994 ACCAACCGATCGAGTACTACTATATG 59.629 42.308 18.66 4.78 0.00 1.78
4269 7092 6.370994 CACCAACCGATCGAGTACTACTATAT 59.629 42.308 18.66 0.00 0.00 0.86
4270 7093 5.698089 CACCAACCGATCGAGTACTACTATA 59.302 44.000 18.66 0.00 0.00 1.31
4271 7094 4.514441 CACCAACCGATCGAGTACTACTAT 59.486 45.833 18.66 0.00 0.00 2.12
4272 7095 3.873361 CACCAACCGATCGAGTACTACTA 59.127 47.826 18.66 0.00 0.00 1.82
4273 7096 2.681848 CACCAACCGATCGAGTACTACT 59.318 50.000 18.66 0.00 0.00 2.57
4274 7097 2.421424 ACACCAACCGATCGAGTACTAC 59.579 50.000 18.66 0.00 0.00 2.73
4275 7098 2.421073 CACACCAACCGATCGAGTACTA 59.579 50.000 18.66 0.00 0.00 1.82
4276 7099 1.201647 CACACCAACCGATCGAGTACT 59.798 52.381 18.66 0.00 0.00 2.73
4277 7100 1.068055 ACACACCAACCGATCGAGTAC 60.068 52.381 18.66 0.00 0.00 2.73
4278 7101 1.250328 ACACACCAACCGATCGAGTA 58.750 50.000 18.66 0.00 0.00 2.59
4279 7102 1.068055 GTACACACCAACCGATCGAGT 60.068 52.381 18.66 10.13 0.00 4.18
4280 7103 1.068125 TGTACACACCAACCGATCGAG 60.068 52.381 18.66 9.42 0.00 4.04
4281 7104 0.960286 TGTACACACCAACCGATCGA 59.040 50.000 18.66 0.00 0.00 3.59
4282 7105 1.458064 GTTGTACACACCAACCGATCG 59.542 52.381 8.51 8.51 36.94 3.69
4283 7106 1.458064 CGTTGTACACACCAACCGATC 59.542 52.381 0.00 0.00 39.16 3.69
4284 7107 1.504359 CGTTGTACACACCAACCGAT 58.496 50.000 0.00 0.00 39.16 4.18
4285 7108 0.530211 CCGTTGTACACACCAACCGA 60.530 55.000 0.00 0.00 39.16 4.69
4286 7109 1.935925 CCGTTGTACACACCAACCG 59.064 57.895 0.00 0.00 39.16 4.44
4287 7110 1.650363 GCCGTTGTACACACCAACC 59.350 57.895 0.00 0.00 39.16 3.77
4288 7111 1.650363 GGCCGTTGTACACACCAAC 59.350 57.895 0.00 0.00 39.01 3.77
4289 7112 1.888172 CGGCCGTTGTACACACCAA 60.888 57.895 19.50 0.00 0.00 3.67
4290 7113 2.280254 CGGCCGTTGTACACACCA 60.280 61.111 19.50 0.00 0.00 4.17
4291 7114 2.025418 CTCGGCCGTTGTACACACC 61.025 63.158 27.15 0.00 0.00 4.16
4292 7115 2.664436 GCTCGGCCGTTGTACACAC 61.664 63.158 27.15 1.89 0.00 3.82
4293 7116 2.356553 GCTCGGCCGTTGTACACA 60.357 61.111 27.15 1.04 0.00 3.72
4294 7117 1.296056 AATGCTCGGCCGTTGTACAC 61.296 55.000 27.15 8.32 0.00 2.90
4295 7118 1.004320 AATGCTCGGCCGTTGTACA 60.004 52.632 27.15 16.93 0.00 2.90
4296 7119 0.739813 AGAATGCTCGGCCGTTGTAC 60.740 55.000 27.15 13.30 0.00 2.90
4297 7120 0.459585 GAGAATGCTCGGCCGTTGTA 60.460 55.000 27.15 18.72 0.00 2.41
4298 7121 1.741770 GAGAATGCTCGGCCGTTGT 60.742 57.895 27.15 10.65 0.00 3.32
4299 7122 1.448540 AGAGAATGCTCGGCCGTTG 60.449 57.895 27.15 19.90 45.98 4.10
4300 7123 1.448540 CAGAGAATGCTCGGCCGTT 60.449 57.895 27.15 12.38 45.98 4.44
4301 7124 2.172483 AACAGAGAATGCTCGGCCGT 62.172 55.000 27.15 4.54 45.98 5.68
4302 7125 1.424493 GAACAGAGAATGCTCGGCCG 61.424 60.000 22.12 22.12 45.98 6.13
4303 7126 1.092345 GGAACAGAGAATGCTCGGCC 61.092 60.000 0.00 0.00 45.98 6.13
4304 7127 1.092345 GGGAACAGAGAATGCTCGGC 61.092 60.000 0.00 0.00 45.98 5.54
4305 7128 0.539051 AGGGAACAGAGAATGCTCGG 59.461 55.000 0.00 0.00 45.98 4.63
4306 7129 2.801342 GCTAGGGAACAGAGAATGCTCG 60.801 54.545 0.00 0.00 45.98 5.03
4307 7130 2.484594 GGCTAGGGAACAGAGAATGCTC 60.485 54.545 0.00 0.00 41.62 4.26
4308 7131 1.488393 GGCTAGGGAACAGAGAATGCT 59.512 52.381 0.00 0.00 0.00 3.79
4309 7132 1.488393 AGGCTAGGGAACAGAGAATGC 59.512 52.381 0.00 0.00 0.00 3.56
4310 7133 3.244044 GCTAGGCTAGGGAACAGAGAATG 60.244 52.174 22.40 0.00 0.00 2.67
4311 7134 2.969262 GCTAGGCTAGGGAACAGAGAAT 59.031 50.000 22.40 0.00 0.00 2.40
4312 7135 2.023888 AGCTAGGCTAGGGAACAGAGAA 60.024 50.000 22.40 0.00 36.99 2.87
4313 7136 1.571457 AGCTAGGCTAGGGAACAGAGA 59.429 52.381 22.40 0.00 36.99 3.10
4314 7137 1.960689 GAGCTAGGCTAGGGAACAGAG 59.039 57.143 22.40 0.00 39.88 3.35
4315 7138 1.411787 GGAGCTAGGCTAGGGAACAGA 60.412 57.143 22.40 0.00 39.88 3.41
4316 7139 1.044611 GGAGCTAGGCTAGGGAACAG 58.955 60.000 22.40 0.00 39.88 3.16
4317 7140 0.755698 CGGAGCTAGGCTAGGGAACA 60.756 60.000 22.40 0.00 39.88 3.18
4318 7141 2.042800 CGGAGCTAGGCTAGGGAAC 58.957 63.158 22.40 6.25 39.88 3.62
4319 7142 4.601042 CGGAGCTAGGCTAGGGAA 57.399 61.111 22.40 0.00 39.88 3.97
4332 7155 2.262915 GGCGATATGGGAGCGGAG 59.737 66.667 0.00 0.00 37.45 4.63
4333 7156 3.680786 CGGCGATATGGGAGCGGA 61.681 66.667 0.00 0.00 37.45 5.54
4334 7157 4.742201 CCGGCGATATGGGAGCGG 62.742 72.222 9.30 0.00 37.45 5.52
4363 7186 4.736896 GAGGTGGTCGACGGTGGC 62.737 72.222 9.92 0.00 0.00 5.01
4364 7187 4.065281 GGAGGTGGTCGACGGTGG 62.065 72.222 9.92 0.00 0.00 4.61
4365 7188 4.065281 GGGAGGTGGTCGACGGTG 62.065 72.222 9.92 0.00 0.00 4.94
4368 7191 3.450115 GAGGGGAGGTGGTCGACG 61.450 72.222 9.92 0.00 0.00 5.12
4369 7192 3.075641 GGAGGGGAGGTGGTCGAC 61.076 72.222 7.13 7.13 0.00 4.20
4370 7193 4.753662 CGGAGGGGAGGTGGTCGA 62.754 72.222 0.00 0.00 0.00 4.20
4372 7195 3.075641 GACGGAGGGGAGGTGGTC 61.076 72.222 0.00 0.00 0.00 4.02
4373 7196 4.716977 GGACGGAGGGGAGGTGGT 62.717 72.222 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.