Multiple sequence alignment - TraesCS3A01G207100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G207100 chr3A 100.000 2360 0 0 1 2360 364527270 364529629 0.000000e+00 4359.0
1 TraesCS3A01G207100 chr3D 91.731 1560 86 25 561 2101 275891296 275889761 0.000000e+00 2126.0
2 TraesCS3A01G207100 chr3D 83.333 246 32 2 1 246 275891745 275891509 3.950000e-53 219.0
3 TraesCS3A01G207100 chr3B 95.041 1109 42 8 660 1762 363325198 363324097 0.000000e+00 1731.0
4 TraesCS3A01G207100 chr3B 86.498 237 31 1 287 522 513714937 513715173 2.330000e-65 259.0
5 TraesCS3A01G207100 chr3B 83.721 258 35 4 1 258 363325601 363325351 1.090000e-58 237.0
6 TraesCS3A01G207100 chr3B 83.333 120 10 3 1903 2012 363323863 363323744 4.150000e-18 102.0
7 TraesCS3A01G207100 chr3B 93.939 66 2 2 1644 1709 394456903 394456840 5.370000e-17 99.0
8 TraesCS3A01G207100 chr7A 95.556 180 8 0 2179 2358 536602267 536602088 2.970000e-74 289.0
9 TraesCS3A01G207100 chr7A 95.000 180 9 0 2181 2360 604648027 604647848 1.380000e-72 283.0
10 TraesCS3A01G207100 chr7A 94.054 185 11 0 2176 2360 41634580 41634764 4.970000e-72 281.0
11 TraesCS3A01G207100 chr7A 88.000 225 26 1 287 510 556166872 556166648 5.000000e-67 265.0
12 TraesCS3A01G207100 chr5A 95.028 181 9 0 2176 2356 466536350 466536170 3.840000e-73 285.0
13 TraesCS3A01G207100 chr5A 94.413 179 10 0 2180 2358 118418009 118417831 2.310000e-70 276.0
14 TraesCS3A01G207100 chr6D 95.455 176 8 0 2181 2356 168033845 168033670 4.970000e-72 281.0
15 TraesCS3A01G207100 chr6D 87.838 222 26 1 287 507 183016933 183017154 2.330000e-65 259.0
16 TraesCS3A01G207100 chr4A 89.908 218 21 1 291 507 621179984 621180201 1.790000e-71 279.0
17 TraesCS3A01G207100 chr2A 94.413 179 10 0 2180 2358 316792979 316793157 2.310000e-70 276.0
18 TraesCS3A01G207100 chr2A 93.956 182 11 0 2179 2360 389622193 389622012 2.310000e-70 276.0
19 TraesCS3A01G207100 chr1D 88.546 227 25 1 287 512 475239030 475238804 8.310000e-70 274.0
20 TraesCS3A01G207100 chr1D 95.000 60 2 1 1644 1703 254447187 254447245 2.500000e-15 93.5
21 TraesCS3A01G207100 chr7D 93.478 184 10 2 2176 2358 175353444 175353626 2.990000e-69 272.0
22 TraesCS3A01G207100 chr7D 86.638 232 29 2 287 517 326123057 326122827 3.010000e-64 255.0
23 TraesCS3A01G207100 chr2D 88.288 222 25 1 287 507 533664845 533665066 5.000000e-67 265.0
24 TraesCS3A01G207100 chr1A 87.444 223 27 1 291 512 14432940 14432718 3.010000e-64 255.0
25 TraesCS3A01G207100 chr5D 86.842 228 29 1 287 513 504478835 504479062 1.080000e-63 254.0
26 TraesCS3A01G207100 chr5D 95.000 60 2 1 1644 1703 6164763 6164705 2.500000e-15 93.5
27 TraesCS3A01G207100 chr5D 95.000 60 2 1 1644 1703 6262755 6262697 2.500000e-15 93.5
28 TraesCS3A01G207100 chr5D 95.000 60 2 1 1644 1703 6263270 6263212 2.500000e-15 93.5
29 TraesCS3A01G207100 chr5D 95.000 60 2 1 1644 1703 6263790 6263732 2.500000e-15 93.5
30 TraesCS3A01G207100 chrUn 95.000 60 2 1 1644 1703 414538893 414538835 2.500000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G207100 chr3A 364527270 364529629 2359 False 4359.0 4359 100.000 1 2360 1 chr3A.!!$F1 2359
1 TraesCS3A01G207100 chr3D 275889761 275891745 1984 True 1172.5 2126 87.532 1 2101 2 chr3D.!!$R1 2100
2 TraesCS3A01G207100 chr3B 363323744 363325601 1857 True 690.0 1731 87.365 1 2012 3 chr3B.!!$R2 2011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 605 0.625849 AGAATTTCCAGCCCGGTCAT 59.374 50.0 0.0 0.0 35.57 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2328 2495 0.028505 CCGCATGAGAGGCAAAATCG 59.971 55.0 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 2.279935 ATTGGTCACTTAAACCCGCA 57.720 45.000 0.00 0.00 35.84 5.69
122 123 2.919859 CAGACGTGCTCAGTTAGTGATG 59.080 50.000 0.00 0.00 33.51 3.07
152 153 5.399013 GTCCGTTTTGACCCTTCATTTATG 58.601 41.667 0.00 0.00 0.00 1.90
153 154 4.082463 TCCGTTTTGACCCTTCATTTATGC 60.082 41.667 0.00 0.00 0.00 3.14
154 155 4.321601 CCGTTTTGACCCTTCATTTATGCA 60.322 41.667 0.00 0.00 0.00 3.96
155 156 5.410067 CGTTTTGACCCTTCATTTATGCAT 58.590 37.500 3.79 3.79 0.00 3.96
156 157 5.868801 CGTTTTGACCCTTCATTTATGCATT 59.131 36.000 3.54 0.00 0.00 3.56
157 158 6.368516 CGTTTTGACCCTTCATTTATGCATTT 59.631 34.615 3.54 0.00 0.00 2.32
206 207 9.689501 TTTACATTCTTCCTAAATTATCCGGTT 57.310 29.630 0.00 0.00 0.00 4.44
231 232 6.465439 AATACGTGTGATTGGTAGAGATGA 57.535 37.500 0.00 0.00 0.00 2.92
234 235 4.462834 ACGTGTGATTGGTAGAGATGAAGA 59.537 41.667 0.00 0.00 0.00 2.87
236 237 5.355596 GTGTGATTGGTAGAGATGAAGAGG 58.644 45.833 0.00 0.00 0.00 3.69
250 251 8.435982 AGAGATGAAGAGGAAAAGAGAAAAGAA 58.564 33.333 0.00 0.00 0.00 2.52
260 261 9.868160 AGGAAAAGAGAAAAGAAAGAATAAGGA 57.132 29.630 0.00 0.00 0.00 3.36
273 274 8.875168 AGAAAGAATAAGGATAGTCATAGTGGG 58.125 37.037 0.00 0.00 0.00 4.61
274 275 7.560796 AAGAATAAGGATAGTCATAGTGGGG 57.439 40.000 0.00 0.00 0.00 4.96
275 276 6.026186 AGAATAAGGATAGTCATAGTGGGGG 58.974 44.000 0.00 0.00 0.00 5.40
276 277 3.726837 AAGGATAGTCATAGTGGGGGT 57.273 47.619 0.00 0.00 0.00 4.95
277 278 4.845530 AAGGATAGTCATAGTGGGGGTA 57.154 45.455 0.00 0.00 0.00 3.69
278 279 4.845530 AGGATAGTCATAGTGGGGGTAA 57.154 45.455 0.00 0.00 0.00 2.85
279 280 4.490706 AGGATAGTCATAGTGGGGGTAAC 58.509 47.826 0.00 0.00 0.00 2.50
280 281 4.172241 AGGATAGTCATAGTGGGGGTAACT 59.828 45.833 0.00 0.00 0.00 2.24
281 282 4.906060 GGATAGTCATAGTGGGGGTAACTT 59.094 45.833 0.00 0.00 0.00 2.66
282 283 6.080009 GGATAGTCATAGTGGGGGTAACTTA 58.920 44.000 0.00 0.00 0.00 2.24
283 284 6.210984 GGATAGTCATAGTGGGGGTAACTTAG 59.789 46.154 0.00 0.00 0.00 2.18
284 285 4.296056 AGTCATAGTGGGGGTAACTTAGG 58.704 47.826 0.00 0.00 0.00 2.69
285 286 4.035814 GTCATAGTGGGGGTAACTTAGGT 58.964 47.826 0.00 0.00 0.00 3.08
286 287 5.043130 AGTCATAGTGGGGGTAACTTAGGTA 60.043 44.000 0.00 0.00 0.00 3.08
287 288 5.662657 GTCATAGTGGGGGTAACTTAGGTAA 59.337 44.000 0.00 0.00 0.00 2.85
288 289 6.156775 GTCATAGTGGGGGTAACTTAGGTAAA 59.843 42.308 0.00 0.00 0.00 2.01
289 290 6.734755 TCATAGTGGGGGTAACTTAGGTAAAA 59.265 38.462 0.00 0.00 0.00 1.52
290 291 7.406739 TCATAGTGGGGGTAACTTAGGTAAAAT 59.593 37.037 0.00 0.00 0.00 1.82
291 292 6.473429 AGTGGGGGTAACTTAGGTAAAATT 57.527 37.500 0.00 0.00 0.00 1.82
292 293 6.866621 AGTGGGGGTAACTTAGGTAAAATTT 58.133 36.000 0.00 0.00 0.00 1.82
293 294 7.307550 AGTGGGGGTAACTTAGGTAAAATTTT 58.692 34.615 8.75 8.75 0.00 1.82
294 295 7.233962 AGTGGGGGTAACTTAGGTAAAATTTTG 59.766 37.037 13.76 0.00 0.00 2.44
295 296 6.014413 TGGGGGTAACTTAGGTAAAATTTTGC 60.014 38.462 13.76 11.93 0.00 3.68
296 297 6.211986 GGGGGTAACTTAGGTAAAATTTTGCT 59.788 38.462 16.98 7.37 0.00 3.91
297 298 7.256404 GGGGGTAACTTAGGTAAAATTTTGCTT 60.256 37.037 16.98 12.86 0.00 3.91
298 299 8.805175 GGGGTAACTTAGGTAAAATTTTGCTTA 58.195 33.333 16.98 11.91 0.00 3.09
303 304 9.705290 AACTTAGGTAAAATTTTGCTTATGTGG 57.295 29.630 21.14 11.55 29.10 4.17
304 305 7.817478 ACTTAGGTAAAATTTTGCTTATGTGGC 59.183 33.333 20.34 4.89 28.13 5.01
305 306 6.107901 AGGTAAAATTTTGCTTATGTGGCA 57.892 33.333 16.98 0.00 37.97 4.92
306 307 6.710278 AGGTAAAATTTTGCTTATGTGGCAT 58.290 32.000 16.98 0.00 39.54 4.40
307 308 6.594937 AGGTAAAATTTTGCTTATGTGGCATG 59.405 34.615 16.98 0.00 39.54 4.06
308 309 6.371271 GGTAAAATTTTGCTTATGTGGCATGT 59.629 34.615 16.98 0.00 39.54 3.21
309 310 7.547370 GGTAAAATTTTGCTTATGTGGCATGTA 59.453 33.333 16.98 0.00 39.54 2.29
310 311 7.976135 AAAATTTTGCTTATGTGGCATGTAA 57.024 28.000 1.75 0.00 39.54 2.41
311 312 8.564509 AAAATTTTGCTTATGTGGCATGTAAT 57.435 26.923 1.75 0.00 39.54 1.89
312 313 8.564509 AAATTTTGCTTATGTGGCATGTAATT 57.435 26.923 0.00 0.00 39.54 1.40
313 314 9.664332 AAATTTTGCTTATGTGGCATGTAATTA 57.336 25.926 0.00 0.00 39.54 1.40
314 315 9.664332 AATTTTGCTTATGTGGCATGTAATTAA 57.336 25.926 0.00 0.00 39.54 1.40
315 316 9.835389 ATTTTGCTTATGTGGCATGTAATTAAT 57.165 25.926 0.00 0.00 39.54 1.40
318 319 9.964303 TTGCTTATGTGGCATGTAATTAATAAG 57.036 29.630 0.00 3.22 39.54 1.73
319 320 8.575589 TGCTTATGTGGCATGTAATTAATAAGG 58.424 33.333 0.00 0.00 34.56 2.69
320 321 8.792633 GCTTATGTGGCATGTAATTAATAAGGA 58.207 33.333 0.00 0.00 30.56 3.36
323 324 8.627208 ATGTGGCATGTAATTAATAAGGAGAG 57.373 34.615 0.00 0.00 0.00 3.20
324 325 7.801104 TGTGGCATGTAATTAATAAGGAGAGA 58.199 34.615 0.00 0.00 0.00 3.10
325 326 7.933577 TGTGGCATGTAATTAATAAGGAGAGAG 59.066 37.037 0.00 0.00 0.00 3.20
326 327 7.389053 GTGGCATGTAATTAATAAGGAGAGAGG 59.611 40.741 0.00 0.00 0.00 3.69
327 328 7.072454 TGGCATGTAATTAATAAGGAGAGAGGT 59.928 37.037 0.00 0.00 0.00 3.85
328 329 7.389053 GGCATGTAATTAATAAGGAGAGAGGTG 59.611 40.741 0.00 0.00 0.00 4.00
329 330 7.934120 GCATGTAATTAATAAGGAGAGAGGTGT 59.066 37.037 0.00 0.00 0.00 4.16
330 331 9.838339 CATGTAATTAATAAGGAGAGAGGTGTT 57.162 33.333 0.00 0.00 0.00 3.32
336 337 8.896722 TTAATAAGGAGAGAGGTGTTTAGAGT 57.103 34.615 0.00 0.00 0.00 3.24
337 338 9.986157 TTAATAAGGAGAGAGGTGTTTAGAGTA 57.014 33.333 0.00 0.00 0.00 2.59
338 339 8.896722 AATAAGGAGAGAGGTGTTTAGAGTAA 57.103 34.615 0.00 0.00 0.00 2.24
339 340 9.495382 AATAAGGAGAGAGGTGTTTAGAGTAAT 57.505 33.333 0.00 0.00 0.00 1.89
368 369 4.178540 TGTTACTGTAACATAGCGCTTCC 58.821 43.478 25.14 0.00 43.23 3.46
369 370 2.311124 ACTGTAACATAGCGCTTCCC 57.689 50.000 18.68 0.00 0.00 3.97
370 371 1.209128 CTGTAACATAGCGCTTCCCG 58.791 55.000 18.68 4.15 40.75 5.14
371 372 0.818938 TGTAACATAGCGCTTCCCGA 59.181 50.000 18.68 0.00 40.02 5.14
372 373 1.205179 TGTAACATAGCGCTTCCCGAA 59.795 47.619 18.68 0.00 40.02 4.30
373 374 2.273557 GTAACATAGCGCTTCCCGAAA 58.726 47.619 18.68 0.00 40.02 3.46
374 375 1.816074 AACATAGCGCTTCCCGAAAA 58.184 45.000 18.68 0.00 40.02 2.29
375 376 1.816074 ACATAGCGCTTCCCGAAAAA 58.184 45.000 18.68 0.00 40.02 1.94
476 477 9.394767 ACTTAAACTAATGTCATATGCATGTCA 57.605 29.630 10.16 0.00 35.21 3.58
485 486 9.783081 AATGTCATATGCATGTCATTAGTCTAA 57.217 29.630 10.16 0.00 44.09 2.10
486 487 8.822652 TGTCATATGCATGTCATTAGTCTAAG 57.177 34.615 10.16 0.00 36.63 2.18
487 488 8.424133 TGTCATATGCATGTCATTAGTCTAAGT 58.576 33.333 10.16 0.00 36.63 2.24
488 489 9.265901 GTCATATGCATGTCATTAGTCTAAGTT 57.734 33.333 10.16 0.00 36.63 2.66
492 493 8.879342 ATGCATGTCATTAGTCTAAGTTACTC 57.121 34.615 0.00 0.00 29.16 2.59
493 494 7.265673 TGCATGTCATTAGTCTAAGTTACTCC 58.734 38.462 0.00 0.00 0.00 3.85
494 495 7.124298 TGCATGTCATTAGTCTAAGTTACTCCT 59.876 37.037 0.00 0.00 0.00 3.69
495 496 7.650104 GCATGTCATTAGTCTAAGTTACTCCTC 59.350 40.741 0.00 0.00 0.00 3.71
496 497 8.687242 CATGTCATTAGTCTAAGTTACTCCTCA 58.313 37.037 0.00 0.00 0.00 3.86
497 498 8.053026 TGTCATTAGTCTAAGTTACTCCTCAC 57.947 38.462 0.00 0.00 0.00 3.51
498 499 7.889073 TGTCATTAGTCTAAGTTACTCCTCACT 59.111 37.037 0.00 0.00 0.00 3.41
499 500 9.393512 GTCATTAGTCTAAGTTACTCCTCACTA 57.606 37.037 0.00 0.00 0.00 2.74
503 504 7.868906 AGTCTAAGTTACTCCTCACTATGAC 57.131 40.000 0.00 0.00 0.00 3.06
504 505 6.829811 AGTCTAAGTTACTCCTCACTATGACC 59.170 42.308 0.00 0.00 31.22 4.02
505 506 6.602406 GTCTAAGTTACTCCTCACTATGACCA 59.398 42.308 0.00 0.00 0.00 4.02
506 507 5.923733 AAGTTACTCCTCACTATGACCAG 57.076 43.478 0.00 0.00 0.00 4.00
508 509 4.951094 AGTTACTCCTCACTATGACCAGAC 59.049 45.833 0.00 0.00 0.00 3.51
513 514 5.654650 ACTCCTCACTATGACCAGACTAAAG 59.345 44.000 0.00 0.00 0.00 1.85
514 515 5.827756 TCCTCACTATGACCAGACTAAAGA 58.172 41.667 0.00 0.00 0.00 2.52
516 517 6.378564 TCCTCACTATGACCAGACTAAAGAAG 59.621 42.308 0.00 0.00 0.00 2.85
519 520 7.831753 TCACTATGACCAGACTAAAGAAGAAG 58.168 38.462 0.00 0.00 0.00 2.85
529 530 2.789409 AAAGAAGAAGATGGTCCGGG 57.211 50.000 0.00 0.00 0.00 5.73
530 531 0.912486 AAGAAGAAGATGGTCCGGGG 59.088 55.000 0.00 0.00 0.00 5.73
533 534 0.840722 AAGAAGATGGTCCGGGGTGT 60.841 55.000 0.00 0.00 0.00 4.16
536 537 4.796495 GATGGTCCGGGGTGTGCC 62.796 72.222 0.00 0.00 0.00 5.01
559 560 4.808649 GGATTGTCCGAGTCCGAC 57.191 61.111 4.83 4.83 38.22 4.79
579 598 5.506317 CCGACAAATATGAGAATTTCCAGCC 60.506 44.000 0.00 0.00 0.00 4.85
586 605 0.625849 AGAATTTCCAGCCCGGTCAT 59.374 50.000 0.00 0.00 35.57 3.06
609 631 2.996621 GGACAAAGTGAGAGGTTCGATG 59.003 50.000 0.00 0.00 0.00 3.84
616 640 1.546029 TGAGAGGTTCGATGGAGTGTG 59.454 52.381 0.00 0.00 0.00 3.82
659 683 0.981183 TTAGACATGACCGGGCAGTT 59.019 50.000 18.96 4.07 0.00 3.16
678 707 2.882137 GTTTGATTGGACGTTTGAGGGA 59.118 45.455 0.00 0.00 0.00 4.20
682 711 1.060729 TTGGACGTTTGAGGGATCCA 58.939 50.000 15.23 0.00 37.68 3.41
735 765 0.676782 GCTCCGGTGCTGGTAAACAT 60.677 55.000 20.97 0.00 0.00 2.71
740 770 3.792716 GTGCTGGTAAACATGGCAC 57.207 52.632 5.44 5.44 44.53 5.01
767 797 1.059369 CTCGCAAGTCGGCAATTCG 59.941 57.895 0.00 0.00 39.05 3.34
817 847 4.568152 ATTCCAAGACGGTTGACAAAAG 57.432 40.909 1.56 0.00 35.57 2.27
963 999 2.202932 CCATCGCAGGGAGGAACG 60.203 66.667 0.00 0.00 0.00 3.95
1054 1090 3.344215 GCCGCATGCAGATCGAGG 61.344 66.667 19.57 9.84 40.77 4.63
1141 1177 1.065854 AGTACCAGTACGAGTACGGCT 60.066 52.381 17.41 5.72 42.92 5.52
1332 1371 2.301296 CAGATGGATCAAGGACCGCTAT 59.699 50.000 0.00 0.00 0.00 2.97
1383 1422 3.503363 GCAGTAGCGCAGGCAAGG 61.503 66.667 11.47 0.00 43.41 3.61
1415 1454 3.566273 AGATCGATCGAGCTGCAAG 57.434 52.632 32.99 0.00 39.61 4.01
1418 1457 2.159184 AGATCGATCGAGCTGCAAGAAA 60.159 45.455 32.99 0.69 39.61 2.52
1466 1505 6.000219 ACTCTACTTGTTTGTGATGCTTGAT 59.000 36.000 0.00 0.00 0.00 2.57
1625 1667 2.329614 GGTGGTTTGCATACGCGGT 61.330 57.895 12.47 0.00 42.97 5.68
1637 1679 0.601576 TACGCGGTTGCTGTTGATGT 60.602 50.000 12.47 0.00 39.65 3.06
1787 1829 8.934023 TTTAGTCAATTATTGTGTTCTTCCCT 57.066 30.769 4.77 0.00 0.00 4.20
1788 1830 8.561738 TTAGTCAATTATTGTGTTCTTCCCTC 57.438 34.615 4.77 0.00 0.00 4.30
1789 1831 5.643777 AGTCAATTATTGTGTTCTTCCCTCG 59.356 40.000 4.77 0.00 0.00 4.63
1790 1832 4.394920 TCAATTATTGTGTTCTTCCCTCGC 59.605 41.667 4.77 0.00 0.00 5.03
1794 1836 2.045561 TGTGTTCTTCCCTCGCAAAA 57.954 45.000 0.00 0.00 0.00 2.44
1795 1837 2.370349 TGTGTTCTTCCCTCGCAAAAA 58.630 42.857 0.00 0.00 0.00 1.94
1835 1974 3.604582 GAACTGGTCAGATTAGCTTGCT 58.395 45.455 4.84 0.00 0.00 3.91
1883 2040 4.036852 GGAAACCTGTATTCTTATGCCAGC 59.963 45.833 0.00 0.00 0.00 4.85
1886 2043 3.181450 ACCTGTATTCTTATGCCAGCTCC 60.181 47.826 0.00 0.00 0.00 4.70
1920 2077 1.275573 AGCCTACTTTTGACGAGGTCC 59.724 52.381 0.00 0.00 0.00 4.46
1937 2095 1.134068 GTCCCAGCCTCAACCTAATCC 60.134 57.143 0.00 0.00 0.00 3.01
1959 2125 2.993899 AGCTTACGAAGACCAAATGACG 59.006 45.455 0.00 0.00 0.00 4.35
2007 2174 9.549509 TGGATTTCATTAACTTTAAACGAATCG 57.450 29.630 0.00 0.00 0.00 3.34
2012 2179 9.588774 TTCATTAACTTTAAACGAATCGTCAAG 57.411 29.630 9.32 13.72 39.99 3.02
2013 2180 8.225107 TCATTAACTTTAAACGAATCGTCAAGG 58.775 33.333 9.32 9.43 39.99 3.61
2016 2183 3.405823 TTAAACGAATCGTCAAGGGGT 57.594 42.857 9.32 0.00 39.99 4.95
2019 2186 3.405823 AACGAATCGTCAAGGGGTTAA 57.594 42.857 9.32 0.00 39.99 2.01
2024 2191 4.023878 CGAATCGTCAAGGGGTTAAAAACA 60.024 41.667 0.00 0.00 0.00 2.83
2031 2198 6.342111 GTCAAGGGGTTAAAAACACAATGAA 58.658 36.000 0.00 0.00 36.19 2.57
2033 2200 6.155393 TCAAGGGGTTAAAAACACAATGAACT 59.845 34.615 0.00 0.00 36.19 3.01
2038 2205 7.929245 GGGGTTAAAAACACAATGAACTTACAT 59.071 33.333 0.00 0.00 36.19 2.29
2061 2228 9.358406 ACATCCAATCTTTGCATATTAGAATGA 57.642 29.630 0.00 0.00 0.00 2.57
2065 2232 9.976511 CCAATCTTTGCATATTAGAATGAACAT 57.023 29.630 0.00 0.00 0.00 2.71
2098 2265 8.810652 ATACAAACGCACAAAGACAAAATATT 57.189 26.923 0.00 0.00 0.00 1.28
2101 2268 6.904954 AACGCACAAAGACAAAATATTACG 57.095 33.333 0.00 0.00 0.00 3.18
2102 2269 4.849383 ACGCACAAAGACAAAATATTACGC 59.151 37.500 0.00 0.00 0.00 4.42
2103 2270 5.086058 CGCACAAAGACAAAATATTACGCT 58.914 37.500 0.00 0.00 0.00 5.07
2104 2271 5.225129 CGCACAAAGACAAAATATTACGCTC 59.775 40.000 0.00 0.00 0.00 5.03
2105 2272 6.314784 GCACAAAGACAAAATATTACGCTCT 58.685 36.000 0.00 0.00 0.00 4.09
2106 2273 6.466097 GCACAAAGACAAAATATTACGCTCTC 59.534 38.462 0.00 0.00 0.00 3.20
2107 2274 6.678663 CACAAAGACAAAATATTACGCTCTCG 59.321 38.462 0.00 0.00 42.43 4.04
2108 2275 6.588756 ACAAAGACAAAATATTACGCTCTCGA 59.411 34.615 0.00 0.00 39.41 4.04
2109 2276 6.570690 AAGACAAAATATTACGCTCTCGAC 57.429 37.500 0.00 0.00 39.41 4.20
2110 2277 5.041940 AGACAAAATATTACGCTCTCGACC 58.958 41.667 0.00 0.00 39.41 4.79
2111 2278 4.751060 ACAAAATATTACGCTCTCGACCA 58.249 39.130 0.00 0.00 39.41 4.02
2112 2279 4.565564 ACAAAATATTACGCTCTCGACCAC 59.434 41.667 0.00 0.00 39.41 4.16
2113 2280 2.682952 ATATTACGCTCTCGACCACG 57.317 50.000 0.00 0.00 39.41 4.94
2114 2281 0.028505 TATTACGCTCTCGACCACGC 59.971 55.000 0.00 0.00 39.41 5.34
2115 2282 2.609183 ATTACGCTCTCGACCACGCC 62.609 60.000 0.00 0.00 39.41 5.68
2117 2284 4.838486 CGCTCTCGACCACGCCTC 62.838 72.222 0.00 0.00 39.58 4.70
2118 2285 3.444805 GCTCTCGACCACGCCTCT 61.445 66.667 0.00 0.00 39.58 3.69
2119 2286 2.795297 CTCTCGACCACGCCTCTC 59.205 66.667 0.00 0.00 39.58 3.20
2120 2287 1.747367 CTCTCGACCACGCCTCTCT 60.747 63.158 0.00 0.00 39.58 3.10
2121 2288 1.303398 TCTCGACCACGCCTCTCTT 60.303 57.895 0.00 0.00 39.58 2.85
2122 2289 1.137825 CTCGACCACGCCTCTCTTC 59.862 63.158 0.00 0.00 39.58 2.87
2123 2290 2.202492 CGACCACGCCTCTCTTCG 60.202 66.667 0.00 0.00 0.00 3.79
2124 2291 2.963371 GACCACGCCTCTCTTCGT 59.037 61.111 0.00 0.00 39.79 3.85
2125 2292 1.642037 CGACCACGCCTCTCTTCGTA 61.642 60.000 0.00 0.00 37.14 3.43
2126 2293 0.179169 GACCACGCCTCTCTTCGTAC 60.179 60.000 0.00 0.00 37.14 3.67
2127 2294 1.226323 CCACGCCTCTCTTCGTACG 60.226 63.158 9.53 9.53 37.14 3.67
2128 2295 1.500844 CACGCCTCTCTTCGTACGT 59.499 57.895 16.05 0.00 37.14 3.57
2129 2296 0.723414 CACGCCTCTCTTCGTACGTA 59.277 55.000 16.05 4.53 37.14 3.57
2130 2297 1.005340 ACGCCTCTCTTCGTACGTAG 58.995 55.000 16.05 15.48 37.14 3.51
2131 2298 0.316032 CGCCTCTCTTCGTACGTAGC 60.316 60.000 16.05 4.14 0.00 3.58
2132 2299 0.029167 GCCTCTCTTCGTACGTAGCC 59.971 60.000 16.05 0.00 0.00 3.93
2133 2300 1.666054 CCTCTCTTCGTACGTAGCCT 58.334 55.000 16.05 0.00 0.00 4.58
2134 2301 1.331138 CCTCTCTTCGTACGTAGCCTG 59.669 57.143 16.05 8.73 0.00 4.85
2135 2302 2.277969 CTCTCTTCGTACGTAGCCTGA 58.722 52.381 16.05 12.14 0.00 3.86
2136 2303 2.277969 TCTCTTCGTACGTAGCCTGAG 58.722 52.381 16.05 13.43 0.00 3.35
2137 2304 2.093816 TCTCTTCGTACGTAGCCTGAGA 60.094 50.000 16.05 15.21 0.00 3.27
2138 2305 2.676839 CTCTTCGTACGTAGCCTGAGAA 59.323 50.000 16.05 0.00 0.00 2.87
2139 2306 3.276857 TCTTCGTACGTAGCCTGAGAAT 58.723 45.455 16.05 0.00 0.00 2.40
2140 2307 3.693085 TCTTCGTACGTAGCCTGAGAATT 59.307 43.478 16.05 0.00 0.00 2.17
2141 2308 3.416119 TCGTACGTAGCCTGAGAATTG 57.584 47.619 16.05 0.00 0.00 2.32
2142 2309 1.852895 CGTACGTAGCCTGAGAATTGC 59.147 52.381 7.22 0.00 0.00 3.56
2143 2310 2.202566 GTACGTAGCCTGAGAATTGCC 58.797 52.381 0.00 0.00 0.00 4.52
2144 2311 0.107654 ACGTAGCCTGAGAATTGCCC 60.108 55.000 0.00 0.00 0.00 5.36
2145 2312 0.107703 CGTAGCCTGAGAATTGCCCA 60.108 55.000 0.00 0.00 0.00 5.36
2146 2313 1.383523 GTAGCCTGAGAATTGCCCAC 58.616 55.000 0.00 0.00 0.00 4.61
2147 2314 1.065126 GTAGCCTGAGAATTGCCCACT 60.065 52.381 0.00 0.00 0.00 4.00
2148 2315 0.407139 AGCCTGAGAATTGCCCACTT 59.593 50.000 0.00 0.00 0.00 3.16
2149 2316 0.813821 GCCTGAGAATTGCCCACTTC 59.186 55.000 0.00 0.00 0.00 3.01
2150 2317 1.467920 CCTGAGAATTGCCCACTTCC 58.532 55.000 0.00 0.00 0.00 3.46
2151 2318 1.272092 CCTGAGAATTGCCCACTTCCA 60.272 52.381 0.00 0.00 0.00 3.53
2152 2319 1.815003 CTGAGAATTGCCCACTTCCAC 59.185 52.381 0.00 0.00 0.00 4.02
2153 2320 1.177401 GAGAATTGCCCACTTCCACC 58.823 55.000 0.00 0.00 0.00 4.61
2154 2321 0.251787 AGAATTGCCCACTTCCACCC 60.252 55.000 0.00 0.00 0.00 4.61
2155 2322 1.229177 AATTGCCCACTTCCACCCC 60.229 57.895 0.00 0.00 0.00 4.95
2156 2323 1.739608 AATTGCCCACTTCCACCCCT 61.740 55.000 0.00 0.00 0.00 4.79
2157 2324 0.849094 ATTGCCCACTTCCACCCCTA 60.849 55.000 0.00 0.00 0.00 3.53
2158 2325 0.849094 TTGCCCACTTCCACCCCTAT 60.849 55.000 0.00 0.00 0.00 2.57
2159 2326 1.279025 TGCCCACTTCCACCCCTATC 61.279 60.000 0.00 0.00 0.00 2.08
2160 2327 1.279025 GCCCACTTCCACCCCTATCA 61.279 60.000 0.00 0.00 0.00 2.15
2161 2328 1.295020 CCCACTTCCACCCCTATCAA 58.705 55.000 0.00 0.00 0.00 2.57
2162 2329 1.852965 CCCACTTCCACCCCTATCAAT 59.147 52.381 0.00 0.00 0.00 2.57
2163 2330 2.423373 CCCACTTCCACCCCTATCAATG 60.423 54.545 0.00 0.00 0.00 2.82
2164 2331 2.301346 CACTTCCACCCCTATCAATGC 58.699 52.381 0.00 0.00 0.00 3.56
2165 2332 1.922447 ACTTCCACCCCTATCAATGCA 59.078 47.619 0.00 0.00 0.00 3.96
2166 2333 2.311542 ACTTCCACCCCTATCAATGCAA 59.688 45.455 0.00 0.00 0.00 4.08
2167 2334 3.052642 ACTTCCACCCCTATCAATGCAAT 60.053 43.478 0.00 0.00 0.00 3.56
2168 2335 2.948115 TCCACCCCTATCAATGCAATG 58.052 47.619 0.00 0.00 0.00 2.82
2169 2336 1.965643 CCACCCCTATCAATGCAATGG 59.034 52.381 1.05 0.00 0.00 3.16
2170 2337 2.669781 CACCCCTATCAATGCAATGGT 58.330 47.619 1.05 0.00 0.00 3.55
2171 2338 3.436325 CCACCCCTATCAATGCAATGGTA 60.436 47.826 1.05 0.00 0.00 3.25
2172 2339 4.410099 CACCCCTATCAATGCAATGGTAT 58.590 43.478 1.05 0.00 0.00 2.73
2173 2340 4.219070 CACCCCTATCAATGCAATGGTATG 59.781 45.833 1.05 0.00 0.00 2.39
2174 2341 3.194116 CCCCTATCAATGCAATGGTATGC 59.806 47.826 1.05 0.00 46.58 3.14
2184 2351 4.906065 GCAATGGTATGCATCTTGAGAA 57.094 40.909 0.19 0.00 45.70 2.87
2185 2352 5.252969 GCAATGGTATGCATCTTGAGAAA 57.747 39.130 0.19 0.00 45.70 2.52
2186 2353 5.653507 GCAATGGTATGCATCTTGAGAAAA 58.346 37.500 0.19 0.00 45.70 2.29
2187 2354 6.278363 GCAATGGTATGCATCTTGAGAAAAT 58.722 36.000 0.19 0.00 45.70 1.82
2188 2355 6.759827 GCAATGGTATGCATCTTGAGAAAATT 59.240 34.615 0.19 0.00 45.70 1.82
2189 2356 7.042925 GCAATGGTATGCATCTTGAGAAAATTC 60.043 37.037 0.19 0.00 45.70 2.17
2190 2357 6.455360 TGGTATGCATCTTGAGAAAATTCC 57.545 37.500 0.19 0.00 0.00 3.01
2191 2358 6.189859 TGGTATGCATCTTGAGAAAATTCCT 58.810 36.000 0.19 0.00 0.00 3.36
2192 2359 6.664816 TGGTATGCATCTTGAGAAAATTCCTT 59.335 34.615 0.19 0.00 0.00 3.36
2193 2360 7.833682 TGGTATGCATCTTGAGAAAATTCCTTA 59.166 33.333 0.19 0.00 0.00 2.69
2194 2361 8.854117 GGTATGCATCTTGAGAAAATTCCTTAT 58.146 33.333 0.19 0.00 0.00 1.73
2197 2364 8.991243 TGCATCTTGAGAAAATTCCTTATTTG 57.009 30.769 0.00 0.00 36.57 2.32
2198 2365 8.805175 TGCATCTTGAGAAAATTCCTTATTTGA 58.195 29.630 0.00 0.00 36.57 2.69
2199 2366 9.080915 GCATCTTGAGAAAATTCCTTATTTGAC 57.919 33.333 0.00 0.00 36.57 3.18
2202 2369 9.354673 TCTTGAGAAAATTCCTTATTTGACACT 57.645 29.630 0.00 0.00 36.57 3.55
2203 2370 9.403110 CTTGAGAAAATTCCTTATTTGACACTG 57.597 33.333 0.00 0.00 36.57 3.66
2204 2371 8.463930 TGAGAAAATTCCTTATTTGACACTGT 57.536 30.769 0.00 0.00 36.57 3.55
2205 2372 8.567948 TGAGAAAATTCCTTATTTGACACTGTC 58.432 33.333 1.86 1.86 36.57 3.51
2206 2373 8.697507 AGAAAATTCCTTATTTGACACTGTCT 57.302 30.769 10.54 0.00 36.57 3.41
2207 2374 9.136323 AGAAAATTCCTTATTTGACACTGTCTT 57.864 29.630 10.54 0.00 36.57 3.01
2221 2388 8.974060 TGACACTGTCTTAAAATTTAGTTCCT 57.026 30.769 10.54 0.00 33.15 3.36
2222 2389 9.403583 TGACACTGTCTTAAAATTTAGTTCCTT 57.596 29.630 10.54 0.00 33.15 3.36
2234 2401 7.718334 AATTTAGTTCCTTATTTGACCCTGG 57.282 36.000 0.00 0.00 0.00 4.45
2235 2402 6.457159 TTTAGTTCCTTATTTGACCCTGGA 57.543 37.500 0.00 0.00 0.00 3.86
2236 2403 6.457159 TTAGTTCCTTATTTGACCCTGGAA 57.543 37.500 0.00 0.00 0.00 3.53
2237 2404 5.333566 AGTTCCTTATTTGACCCTGGAAA 57.666 39.130 0.00 0.00 35.68 3.13
2238 2405 5.711698 AGTTCCTTATTTGACCCTGGAAAA 58.288 37.500 0.00 0.00 35.68 2.29
2239 2406 6.140377 AGTTCCTTATTTGACCCTGGAAAAA 58.860 36.000 0.00 0.00 35.68 1.94
2266 2433 9.682465 ATTTTCTTCCCTATTTAACACTAGTCC 57.318 33.333 0.00 0.00 0.00 3.85
2267 2434 8.445361 TTTCTTCCCTATTTAACACTAGTCCT 57.555 34.615 0.00 0.00 0.00 3.85
2268 2435 9.551339 TTTCTTCCCTATTTAACACTAGTCCTA 57.449 33.333 0.00 0.00 0.00 2.94
2269 2436 9.551339 TTCTTCCCTATTTAACACTAGTCCTAA 57.449 33.333 0.00 0.00 0.00 2.69
2270 2437 9.551339 TCTTCCCTATTTAACACTAGTCCTAAA 57.449 33.333 0.00 0.33 0.00 1.85
2288 2455 9.993454 AGTCCTAAATTTTATTCCCTATACGAC 57.007 33.333 0.00 0.00 0.00 4.34
2289 2456 9.768662 GTCCTAAATTTTATTCCCTATACGACA 57.231 33.333 0.00 0.00 0.00 4.35
2290 2457 9.768662 TCCTAAATTTTATTCCCTATACGACAC 57.231 33.333 0.00 0.00 0.00 3.67
2291 2458 9.774413 CCTAAATTTTATTCCCTATACGACACT 57.226 33.333 0.00 0.00 0.00 3.55
2294 2461 8.672823 AATTTTATTCCCTATACGACACTTCC 57.327 34.615 0.00 0.00 0.00 3.46
2295 2462 5.443185 TTATTCCCTATACGACACTTCCG 57.557 43.478 0.00 0.00 0.00 4.30
2296 2463 2.425143 TCCCTATACGACACTTCCGT 57.575 50.000 0.00 0.00 43.26 4.69
2297 2464 2.292267 TCCCTATACGACACTTCCGTC 58.708 52.381 0.00 0.00 40.95 4.79
2298 2465 1.336125 CCCTATACGACACTTCCGTCC 59.664 57.143 0.00 0.00 40.95 4.79
2299 2466 2.019249 CCTATACGACACTTCCGTCCA 58.981 52.381 0.00 0.00 40.95 4.02
2300 2467 2.621998 CCTATACGACACTTCCGTCCAT 59.378 50.000 0.00 0.00 40.95 3.41
2301 2468 3.067742 CCTATACGACACTTCCGTCCATT 59.932 47.826 0.00 0.00 40.95 3.16
2302 2469 3.604875 ATACGACACTTCCGTCCATTT 57.395 42.857 0.00 0.00 40.95 2.32
2303 2470 2.249844 ACGACACTTCCGTCCATTTT 57.750 45.000 0.00 0.00 34.97 1.82
2304 2471 3.389925 ACGACACTTCCGTCCATTTTA 57.610 42.857 0.00 0.00 34.97 1.52
2305 2472 3.731089 ACGACACTTCCGTCCATTTTAA 58.269 40.909 0.00 0.00 34.97 1.52
2306 2473 3.744426 ACGACACTTCCGTCCATTTTAAG 59.256 43.478 0.00 0.00 34.97 1.85
2307 2474 3.424433 CGACACTTCCGTCCATTTTAAGC 60.424 47.826 0.00 0.00 31.91 3.09
2308 2475 2.817844 ACACTTCCGTCCATTTTAAGCC 59.182 45.455 0.00 0.00 0.00 4.35
2309 2476 3.081804 CACTTCCGTCCATTTTAAGCCT 58.918 45.455 0.00 0.00 0.00 4.58
2310 2477 4.258543 CACTTCCGTCCATTTTAAGCCTA 58.741 43.478 0.00 0.00 0.00 3.93
2311 2478 4.698304 CACTTCCGTCCATTTTAAGCCTAA 59.302 41.667 0.00 0.00 0.00 2.69
2312 2479 5.182380 CACTTCCGTCCATTTTAAGCCTAAA 59.818 40.000 0.00 0.00 0.00 1.85
2313 2480 5.949952 ACTTCCGTCCATTTTAAGCCTAAAT 59.050 36.000 0.00 0.00 0.00 1.40
2314 2481 5.828299 TCCGTCCATTTTAAGCCTAAATG 57.172 39.130 8.17 8.17 40.81 2.32
2315 2482 5.502079 TCCGTCCATTTTAAGCCTAAATGA 58.498 37.500 14.08 0.00 42.72 2.57
2316 2483 5.355910 TCCGTCCATTTTAAGCCTAAATGAC 59.644 40.000 14.08 8.84 42.72 3.06
2317 2484 5.124776 CCGTCCATTTTAAGCCTAAATGACA 59.875 40.000 14.08 0.00 42.72 3.58
2318 2485 6.027749 CGTCCATTTTAAGCCTAAATGACAC 58.972 40.000 14.08 10.26 42.72 3.67
2319 2486 6.330278 GTCCATTTTAAGCCTAAATGACACC 58.670 40.000 14.08 0.83 42.72 4.16
2320 2487 6.152831 GTCCATTTTAAGCCTAAATGACACCT 59.847 38.462 14.08 0.00 42.72 4.00
2321 2488 6.152661 TCCATTTTAAGCCTAAATGACACCTG 59.847 38.462 14.08 1.57 42.72 4.00
2322 2489 6.152661 CCATTTTAAGCCTAAATGACACCTGA 59.847 38.462 14.08 0.00 42.72 3.86
2323 2490 7.309744 CCATTTTAAGCCTAAATGACACCTGAA 60.310 37.037 14.08 0.00 42.72 3.02
2324 2491 7.589958 TTTTAAGCCTAAATGACACCTGAAA 57.410 32.000 0.00 0.00 0.00 2.69
2325 2492 7.589958 TTTAAGCCTAAATGACACCTGAAAA 57.410 32.000 0.00 0.00 0.00 2.29
2326 2493 5.712152 AAGCCTAAATGACACCTGAAAAG 57.288 39.130 0.00 0.00 0.00 2.27
2327 2494 4.985538 AGCCTAAATGACACCTGAAAAGA 58.014 39.130 0.00 0.00 0.00 2.52
2328 2495 4.762251 AGCCTAAATGACACCTGAAAAGAC 59.238 41.667 0.00 0.00 0.00 3.01
2329 2496 4.378459 GCCTAAATGACACCTGAAAAGACG 60.378 45.833 0.00 0.00 0.00 4.18
2330 2497 4.994852 CCTAAATGACACCTGAAAAGACGA 59.005 41.667 0.00 0.00 0.00 4.20
2331 2498 5.643777 CCTAAATGACACCTGAAAAGACGAT 59.356 40.000 0.00 0.00 0.00 3.73
2332 2499 6.149474 CCTAAATGACACCTGAAAAGACGATT 59.851 38.462 0.00 0.00 0.00 3.34
2333 2500 6.391227 AAATGACACCTGAAAAGACGATTT 57.609 33.333 0.00 0.00 0.00 2.17
2334 2501 6.391227 AATGACACCTGAAAAGACGATTTT 57.609 33.333 0.00 0.00 0.00 1.82
2335 2502 5.168526 TGACACCTGAAAAGACGATTTTG 57.831 39.130 7.63 0.00 0.00 2.44
2336 2503 3.964909 ACACCTGAAAAGACGATTTTGC 58.035 40.909 7.63 0.00 0.00 3.68
2337 2504 3.243401 ACACCTGAAAAGACGATTTTGCC 60.243 43.478 7.63 0.00 0.00 4.52
2338 2505 3.004734 CACCTGAAAAGACGATTTTGCCT 59.995 43.478 7.63 0.00 0.00 4.75
2339 2506 3.253432 ACCTGAAAAGACGATTTTGCCTC 59.747 43.478 7.63 0.00 0.00 4.70
2340 2507 3.503748 CCTGAAAAGACGATTTTGCCTCT 59.496 43.478 7.63 0.00 0.00 3.69
2341 2508 4.378874 CCTGAAAAGACGATTTTGCCTCTC 60.379 45.833 7.63 0.00 0.00 3.20
2342 2509 4.133820 TGAAAAGACGATTTTGCCTCTCA 58.866 39.130 7.63 0.00 0.00 3.27
2343 2510 4.761739 TGAAAAGACGATTTTGCCTCTCAT 59.238 37.500 7.63 0.00 0.00 2.90
2344 2511 4.691860 AAAGACGATTTTGCCTCTCATG 57.308 40.909 0.00 0.00 0.00 3.07
2345 2512 2.012673 AGACGATTTTGCCTCTCATGC 58.987 47.619 0.00 0.00 0.00 4.06
2346 2513 0.729116 ACGATTTTGCCTCTCATGCG 59.271 50.000 0.00 0.00 0.00 4.73
2347 2514 0.028505 CGATTTTGCCTCTCATGCGG 59.971 55.000 0.00 0.00 0.00 5.69
2348 2515 1.098050 GATTTTGCCTCTCATGCGGT 58.902 50.000 0.00 0.00 0.00 5.68
2349 2516 2.288666 GATTTTGCCTCTCATGCGGTA 58.711 47.619 0.00 0.00 0.00 4.02
2350 2517 2.418368 TTTTGCCTCTCATGCGGTAT 57.582 45.000 0.00 0.00 0.00 2.73
2351 2518 3.552132 TTTTGCCTCTCATGCGGTATA 57.448 42.857 0.00 0.00 0.00 1.47
2352 2519 3.769739 TTTGCCTCTCATGCGGTATAT 57.230 42.857 0.00 0.00 0.00 0.86
2353 2520 2.749280 TGCCTCTCATGCGGTATATG 57.251 50.000 0.00 0.00 0.00 1.78
2354 2521 1.970640 TGCCTCTCATGCGGTATATGT 59.029 47.619 0.00 0.00 0.00 2.29
2355 2522 2.289010 TGCCTCTCATGCGGTATATGTG 60.289 50.000 0.00 0.00 0.00 3.21
2356 2523 2.289072 GCCTCTCATGCGGTATATGTGT 60.289 50.000 0.00 0.00 0.00 3.72
2357 2524 3.320626 CCTCTCATGCGGTATATGTGTG 58.679 50.000 0.00 0.00 0.00 3.82
2358 2525 3.243873 CCTCTCATGCGGTATATGTGTGT 60.244 47.826 0.00 0.00 0.00 3.72
2359 2526 3.716601 TCTCATGCGGTATATGTGTGTG 58.283 45.455 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.528489 ACTGTATTTAATCACCAAAACAGGTAT 57.472 29.630 0.00 0.00 40.77 2.73
24 25 9.959749 TTCTGAACTGTATTTAATCACCAAAAC 57.040 29.630 0.00 0.00 0.00 2.43
27 28 9.739276 ATCTTCTGAACTGTATTTAATCACCAA 57.261 29.630 0.00 0.00 0.00 3.67
102 103 2.094494 CCATCACTAACTGAGCACGTCT 60.094 50.000 0.00 0.00 30.20 4.18
122 123 1.568025 GTCAAAACGGACGTGCTCC 59.432 57.895 5.27 0.00 35.33 4.70
155 156 9.845740 AAGGACATAGTTACATGCATACATAAA 57.154 29.630 0.00 0.00 33.67 1.40
156 157 9.845740 AAAGGACATAGTTACATGCATACATAA 57.154 29.630 0.00 0.00 33.67 1.90
206 207 8.002984 TCATCTCTACCAATCACACGTATTTA 57.997 34.615 0.00 0.00 0.00 1.40
211 212 4.462834 TCTTCATCTCTACCAATCACACGT 59.537 41.667 0.00 0.00 0.00 4.49
234 235 9.868160 TCCTTATTCTTTCTTTTCTCTTTTCCT 57.132 29.630 0.00 0.00 0.00 3.36
250 251 6.502158 CCCCCACTATGACTATCCTTATTCTT 59.498 42.308 0.00 0.00 0.00 2.52
258 259 4.490706 AGTTACCCCCACTATGACTATCC 58.509 47.826 0.00 0.00 0.00 2.59
259 260 6.210984 CCTAAGTTACCCCCACTATGACTATC 59.789 46.154 0.00 0.00 0.00 2.08
260 261 6.082707 CCTAAGTTACCCCCACTATGACTAT 58.917 44.000 0.00 0.00 0.00 2.12
261 262 5.043130 ACCTAAGTTACCCCCACTATGACTA 60.043 44.000 0.00 0.00 0.00 2.59
262 263 4.265169 ACCTAAGTTACCCCCACTATGACT 60.265 45.833 0.00 0.00 0.00 3.41
263 264 4.035814 ACCTAAGTTACCCCCACTATGAC 58.964 47.826 0.00 0.00 0.00 3.06
264 265 4.357313 ACCTAAGTTACCCCCACTATGA 57.643 45.455 0.00 0.00 0.00 2.15
265 266 6.564557 TTTACCTAAGTTACCCCCACTATG 57.435 41.667 0.00 0.00 0.00 2.23
266 267 7.776291 ATTTTACCTAAGTTACCCCCACTAT 57.224 36.000 0.00 0.00 0.00 2.12
267 268 7.587375 AATTTTACCTAAGTTACCCCCACTA 57.413 36.000 0.00 0.00 0.00 2.74
268 269 6.473429 AATTTTACCTAAGTTACCCCCACT 57.527 37.500 0.00 0.00 0.00 4.00
269 270 7.380536 CAAAATTTTACCTAAGTTACCCCCAC 58.619 38.462 2.44 0.00 0.00 4.61
270 271 6.014413 GCAAAATTTTACCTAAGTTACCCCCA 60.014 38.462 2.44 0.00 0.00 4.96
271 272 6.211986 AGCAAAATTTTACCTAAGTTACCCCC 59.788 38.462 2.44 0.00 0.00 5.40
272 273 7.235935 AGCAAAATTTTACCTAAGTTACCCC 57.764 36.000 2.44 0.00 0.00 4.95
277 278 9.705290 CCACATAAGCAAAATTTTACCTAAGTT 57.295 29.630 2.44 0.00 0.00 2.66
278 279 7.817478 GCCACATAAGCAAAATTTTACCTAAGT 59.183 33.333 2.44 0.00 0.00 2.24
279 280 7.816995 TGCCACATAAGCAAAATTTTACCTAAG 59.183 33.333 2.44 0.00 37.28 2.18
280 281 7.671302 TGCCACATAAGCAAAATTTTACCTAA 58.329 30.769 2.44 0.00 37.28 2.69
281 282 7.233389 TGCCACATAAGCAAAATTTTACCTA 57.767 32.000 2.44 0.00 37.28 3.08
282 283 6.107901 TGCCACATAAGCAAAATTTTACCT 57.892 33.333 2.44 0.44 37.28 3.08
283 284 6.371271 ACATGCCACATAAGCAAAATTTTACC 59.629 34.615 2.44 0.00 44.83 2.85
284 285 7.363205 ACATGCCACATAAGCAAAATTTTAC 57.637 32.000 2.44 0.00 44.83 2.01
285 286 9.664332 ATTACATGCCACATAAGCAAAATTTTA 57.336 25.926 2.44 0.00 44.83 1.52
286 287 7.976135 TTACATGCCACATAAGCAAAATTTT 57.024 28.000 0.00 0.00 44.83 1.82
287 288 8.564509 AATTACATGCCACATAAGCAAAATTT 57.435 26.923 0.00 0.00 44.83 1.82
288 289 9.664332 TTAATTACATGCCACATAAGCAAAATT 57.336 25.926 0.00 0.00 44.83 1.82
289 290 9.835389 ATTAATTACATGCCACATAAGCAAAAT 57.165 25.926 0.00 0.00 44.83 1.82
292 293 9.964303 CTTATTAATTACATGCCACATAAGCAA 57.036 29.630 0.00 0.00 44.83 3.91
293 294 8.575589 CCTTATTAATTACATGCCACATAAGCA 58.424 33.333 0.00 0.00 45.94 3.91
294 295 8.792633 TCCTTATTAATTACATGCCACATAAGC 58.207 33.333 0.00 0.00 0.00 3.09
297 298 9.725019 CTCTCCTTATTAATTACATGCCACATA 57.275 33.333 0.00 0.00 0.00 2.29
298 299 8.439971 TCTCTCCTTATTAATTACATGCCACAT 58.560 33.333 0.00 0.00 0.00 3.21
299 300 7.801104 TCTCTCCTTATTAATTACATGCCACA 58.199 34.615 0.00 0.00 0.00 4.17
300 301 7.389053 CCTCTCTCCTTATTAATTACATGCCAC 59.611 40.741 0.00 0.00 0.00 5.01
301 302 7.072454 ACCTCTCTCCTTATTAATTACATGCCA 59.928 37.037 0.00 0.00 0.00 4.92
302 303 7.389053 CACCTCTCTCCTTATTAATTACATGCC 59.611 40.741 0.00 0.00 0.00 4.40
303 304 7.934120 ACACCTCTCTCCTTATTAATTACATGC 59.066 37.037 0.00 0.00 0.00 4.06
304 305 9.838339 AACACCTCTCTCCTTATTAATTACATG 57.162 33.333 0.00 0.00 0.00 3.21
310 311 9.495382 ACTCTAAACACCTCTCTCCTTATTAAT 57.505 33.333 0.00 0.00 0.00 1.40
311 312 8.896722 ACTCTAAACACCTCTCTCCTTATTAA 57.103 34.615 0.00 0.00 0.00 1.40
312 313 9.986157 TTACTCTAAACACCTCTCTCCTTATTA 57.014 33.333 0.00 0.00 0.00 0.98
313 314 8.896722 TTACTCTAAACACCTCTCTCCTTATT 57.103 34.615 0.00 0.00 0.00 1.40
347 348 3.554731 GGGAAGCGCTATGTTACAGTAAC 59.445 47.826 12.05 15.58 39.11 2.50
348 349 3.735820 CGGGAAGCGCTATGTTACAGTAA 60.736 47.826 12.05 0.00 0.00 2.24
349 350 2.223641 CGGGAAGCGCTATGTTACAGTA 60.224 50.000 12.05 0.00 0.00 2.74
350 351 1.470979 CGGGAAGCGCTATGTTACAGT 60.471 52.381 12.05 0.00 0.00 3.55
351 352 1.202371 TCGGGAAGCGCTATGTTACAG 60.202 52.381 12.05 0.00 0.00 2.74
352 353 0.818938 TCGGGAAGCGCTATGTTACA 59.181 50.000 12.05 0.00 0.00 2.41
353 354 1.930567 TTCGGGAAGCGCTATGTTAC 58.069 50.000 12.05 0.00 0.00 2.50
354 355 2.676632 TTTCGGGAAGCGCTATGTTA 57.323 45.000 12.05 0.00 0.00 2.41
355 356 1.816074 TTTTCGGGAAGCGCTATGTT 58.184 45.000 12.05 0.00 0.00 2.71
356 357 1.816074 TTTTTCGGGAAGCGCTATGT 58.184 45.000 12.05 0.00 0.00 2.29
450 451 9.394767 TGACATGCATATGACATTAGTTTAAGT 57.605 29.630 6.97 1.86 34.79 2.24
460 461 9.433153 CTTAGACTAATGACATGCATATGACAT 57.567 33.333 6.97 6.84 46.57 3.06
461 462 8.424133 ACTTAGACTAATGACATGCATATGACA 58.576 33.333 6.97 4.57 41.75 3.58
462 463 8.824159 ACTTAGACTAATGACATGCATATGAC 57.176 34.615 6.97 0.00 35.78 3.06
466 467 9.967346 GAGTAACTTAGACTAATGACATGCATA 57.033 33.333 0.00 0.00 35.78 3.14
467 468 7.928706 GGAGTAACTTAGACTAATGACATGCAT 59.071 37.037 0.00 0.00 39.43 3.96
468 469 7.124298 AGGAGTAACTTAGACTAATGACATGCA 59.876 37.037 0.00 0.00 0.00 3.96
469 470 7.493367 AGGAGTAACTTAGACTAATGACATGC 58.507 38.462 0.00 0.00 0.00 4.06
470 471 8.687242 TGAGGAGTAACTTAGACTAATGACATG 58.313 37.037 0.00 0.00 0.00 3.21
471 472 8.688151 GTGAGGAGTAACTTAGACTAATGACAT 58.312 37.037 0.00 0.00 0.00 3.06
472 473 7.889073 AGTGAGGAGTAACTTAGACTAATGACA 59.111 37.037 0.00 0.00 0.00 3.58
473 474 8.283699 AGTGAGGAGTAACTTAGACTAATGAC 57.716 38.462 0.00 0.00 0.00 3.06
477 478 9.393512 GTCATAGTGAGGAGTAACTTAGACTAA 57.606 37.037 0.00 0.00 31.58 2.24
478 479 7.992033 GGTCATAGTGAGGAGTAACTTAGACTA 59.008 40.741 0.00 0.00 33.27 2.59
479 480 6.829811 GGTCATAGTGAGGAGTAACTTAGACT 59.170 42.308 0.00 0.00 33.27 3.24
480 481 6.602406 TGGTCATAGTGAGGAGTAACTTAGAC 59.398 42.308 0.00 0.00 32.58 2.59
481 482 6.728411 TGGTCATAGTGAGGAGTAACTTAGA 58.272 40.000 0.00 0.00 0.00 2.10
482 483 6.829298 TCTGGTCATAGTGAGGAGTAACTTAG 59.171 42.308 0.00 0.00 0.00 2.18
483 484 6.602406 GTCTGGTCATAGTGAGGAGTAACTTA 59.398 42.308 0.00 0.00 0.00 2.24
484 485 5.419471 GTCTGGTCATAGTGAGGAGTAACTT 59.581 44.000 0.00 0.00 0.00 2.66
485 486 4.951094 GTCTGGTCATAGTGAGGAGTAACT 59.049 45.833 0.00 0.00 0.00 2.24
486 487 4.951094 AGTCTGGTCATAGTGAGGAGTAAC 59.049 45.833 0.00 0.00 0.00 2.50
487 488 5.194473 AGTCTGGTCATAGTGAGGAGTAA 57.806 43.478 0.00 0.00 0.00 2.24
488 489 4.864483 AGTCTGGTCATAGTGAGGAGTA 57.136 45.455 0.00 0.00 0.00 2.59
489 490 3.748645 AGTCTGGTCATAGTGAGGAGT 57.251 47.619 0.00 0.00 0.00 3.85
490 491 5.888724 TCTTTAGTCTGGTCATAGTGAGGAG 59.111 44.000 0.00 0.00 0.00 3.69
491 492 5.827756 TCTTTAGTCTGGTCATAGTGAGGA 58.172 41.667 0.00 0.00 0.00 3.71
492 493 6.378564 TCTTCTTTAGTCTGGTCATAGTGAGG 59.621 42.308 0.00 0.00 0.00 3.86
493 494 7.397892 TCTTCTTTAGTCTGGTCATAGTGAG 57.602 40.000 0.00 0.00 0.00 3.51
494 495 7.670140 TCTTCTTCTTTAGTCTGGTCATAGTGA 59.330 37.037 0.00 0.00 0.00 3.41
495 496 7.831753 TCTTCTTCTTTAGTCTGGTCATAGTG 58.168 38.462 0.00 0.00 0.00 2.74
496 497 8.474025 CATCTTCTTCTTTAGTCTGGTCATAGT 58.526 37.037 0.00 0.00 0.00 2.12
497 498 7.925483 CCATCTTCTTCTTTAGTCTGGTCATAG 59.075 40.741 0.00 0.00 0.00 2.23
498 499 7.400339 ACCATCTTCTTCTTTAGTCTGGTCATA 59.600 37.037 0.00 0.00 28.61 2.15
499 500 6.214412 ACCATCTTCTTCTTTAGTCTGGTCAT 59.786 38.462 0.00 0.00 28.61 3.06
500 501 5.544176 ACCATCTTCTTCTTTAGTCTGGTCA 59.456 40.000 0.00 0.00 28.61 4.02
501 502 6.043854 ACCATCTTCTTCTTTAGTCTGGTC 57.956 41.667 0.00 0.00 28.61 4.02
502 503 5.046231 GGACCATCTTCTTCTTTAGTCTGGT 60.046 44.000 0.00 0.00 37.19 4.00
503 504 5.423886 GGACCATCTTCTTCTTTAGTCTGG 58.576 45.833 0.00 0.00 0.00 3.86
504 505 5.105752 CGGACCATCTTCTTCTTTAGTCTG 58.894 45.833 0.00 0.00 0.00 3.51
505 506 4.160626 CCGGACCATCTTCTTCTTTAGTCT 59.839 45.833 0.00 0.00 0.00 3.24
506 507 4.434520 CCGGACCATCTTCTTCTTTAGTC 58.565 47.826 0.00 0.00 0.00 2.59
508 509 3.432326 CCCCGGACCATCTTCTTCTTTAG 60.432 52.174 0.73 0.00 0.00 1.85
513 514 0.107654 CACCCCGGACCATCTTCTTC 60.108 60.000 0.73 0.00 0.00 2.87
514 515 0.840722 ACACCCCGGACCATCTTCTT 60.841 55.000 0.73 0.00 0.00 2.52
516 517 1.078426 CACACCCCGGACCATCTTC 60.078 63.158 0.73 0.00 0.00 2.87
519 520 4.796495 GGCACACCCCGGACCATC 62.796 72.222 0.73 0.00 0.00 3.51
542 543 0.245539 TTGTCGGACTCGGACAATCC 59.754 55.000 21.96 0.00 34.29 3.01
544 545 2.762535 ATTTGTCGGACTCGGACAAT 57.237 45.000 24.77 15.65 36.81 2.71
550 551 6.292381 GGAAATTCTCATATTTGTCGGACTCG 60.292 42.308 9.88 0.00 37.82 4.18
554 555 5.296780 GCTGGAAATTCTCATATTTGTCGGA 59.703 40.000 0.00 0.00 0.00 4.55
558 559 4.339247 CGGGCTGGAAATTCTCATATTTGT 59.661 41.667 0.00 0.00 0.00 2.83
559 560 4.261741 CCGGGCTGGAAATTCTCATATTTG 60.262 45.833 6.48 0.00 42.00 2.32
579 598 2.496070 TCTCACTTTGTCCTATGACCGG 59.504 50.000 0.00 0.00 41.01 5.28
586 605 3.493334 TCGAACCTCTCACTTTGTCCTA 58.507 45.455 0.00 0.00 0.00 2.94
625 649 9.581099 GGTCATGTCTAAACAGAAAAAGAAAAA 57.419 29.630 0.00 0.00 39.20 1.94
626 650 7.913297 CGGTCATGTCTAAACAGAAAAAGAAAA 59.087 33.333 0.00 0.00 39.20 2.29
627 651 7.414436 CGGTCATGTCTAAACAGAAAAAGAAA 58.586 34.615 0.00 0.00 39.20 2.52
628 652 6.017440 CCGGTCATGTCTAAACAGAAAAAGAA 60.017 38.462 0.00 0.00 39.20 2.52
629 653 5.468746 CCGGTCATGTCTAAACAGAAAAAGA 59.531 40.000 0.00 0.00 39.20 2.52
630 654 5.334879 CCCGGTCATGTCTAAACAGAAAAAG 60.335 44.000 0.00 0.00 39.20 2.27
631 655 4.517453 CCCGGTCATGTCTAAACAGAAAAA 59.483 41.667 0.00 0.00 39.20 1.94
641 665 0.981183 AAACTGCCCGGTCATGTCTA 59.019 50.000 0.00 0.00 0.00 2.59
647 671 0.893270 CCAATCAAACTGCCCGGTCA 60.893 55.000 0.00 0.00 0.00 4.02
648 672 0.608035 TCCAATCAAACTGCCCGGTC 60.608 55.000 0.00 0.00 0.00 4.79
649 673 0.893727 GTCCAATCAAACTGCCCGGT 60.894 55.000 0.00 0.00 0.00 5.28
650 674 1.883021 GTCCAATCAAACTGCCCGG 59.117 57.895 0.00 0.00 0.00 5.73
659 683 2.940994 TCCCTCAAACGTCCAATCAA 57.059 45.000 0.00 0.00 0.00 2.57
678 707 5.046878 TGTCTTACACCGTCTACAAATGGAT 60.047 40.000 0.00 0.00 0.00 3.41
727 757 0.596082 AGCAACGTGCCATGTTTACC 59.404 50.000 0.00 0.00 46.52 2.85
735 765 2.892334 GCGAGAAAGCAACGTGCCA 61.892 57.895 6.39 0.00 46.52 4.92
767 797 4.569162 CCAATTGCAATTCCATGACATCAC 59.431 41.667 21.70 0.00 0.00 3.06
817 847 4.760047 ACGGGAGGTGTCGCATGC 62.760 66.667 7.91 7.91 35.33 4.06
944 979 1.153349 GTTCCTCCCTGCGATGGTC 60.153 63.158 0.00 0.00 0.00 4.02
963 999 2.074113 GCAGGGGGAGATGGGATTCC 62.074 65.000 0.00 0.00 0.00 3.01
1332 1371 2.697761 GCCGTAGACGAGGTGCAGA 61.698 63.158 3.07 0.00 43.02 4.26
1383 1422 0.997932 CGATCTGCTCTGTGCTGTTC 59.002 55.000 3.20 6.46 43.37 3.18
1448 1487 4.921515 CCTTGATCAAGCATCACAAACAAG 59.078 41.667 27.01 7.40 41.56 3.16
1466 1505 8.197592 TGTTTACCTATCTTTACTGACCTTGA 57.802 34.615 0.00 0.00 0.00 3.02
1625 1667 4.633565 GGAAAAACCAAACATCAACAGCAA 59.366 37.500 0.00 0.00 38.79 3.91
1667 1709 8.519526 TGAAGTTGTTGATGTTTATATTGGTCC 58.480 33.333 0.00 0.00 0.00 4.46
1732 1774 7.378966 TCATAAAACCAAACAACAACAACTCA 58.621 30.769 0.00 0.00 0.00 3.41
1769 1811 4.331968 TGCGAGGGAAGAACACAATAATT 58.668 39.130 0.00 0.00 0.00 1.40
1770 1812 3.950397 TGCGAGGGAAGAACACAATAAT 58.050 40.909 0.00 0.00 0.00 1.28
1772 1814 3.410631 TTGCGAGGGAAGAACACAATA 57.589 42.857 0.00 0.00 0.00 1.90
1773 1815 2.270352 TTGCGAGGGAAGAACACAAT 57.730 45.000 0.00 0.00 0.00 2.71
1774 1816 2.045561 TTTGCGAGGGAAGAACACAA 57.954 45.000 0.00 0.00 0.00 3.33
1775 1817 2.045561 TTTTGCGAGGGAAGAACACA 57.954 45.000 0.00 0.00 0.00 3.72
1835 1974 1.741401 CCTTCCACGCAATCGCAGA 60.741 57.895 0.00 0.00 45.75 4.26
1883 2040 1.590932 GCTATGTCACAGCCATGGAG 58.409 55.000 18.40 9.72 32.68 3.86
1920 2077 1.748591 GCTGGATTAGGTTGAGGCTGG 60.749 57.143 0.00 0.00 0.00 4.85
1937 2095 3.181530 CGTCATTTGGTCTTCGTAAGCTG 60.182 47.826 0.00 0.00 37.18 4.24
1996 2163 3.405823 ACCCCTTGACGATTCGTTTAA 57.594 42.857 13.72 10.72 41.37 1.52
2001 2168 4.023878 TGTTTTTAACCCCTTGACGATTCG 60.024 41.667 4.14 4.14 0.00 3.34
2007 2174 5.908341 TCATTGTGTTTTTAACCCCTTGAC 58.092 37.500 0.00 0.00 0.00 3.18
2012 2179 7.266400 TGTAAGTTCATTGTGTTTTTAACCCC 58.734 34.615 0.00 0.00 0.00 4.95
2013 2180 8.880878 ATGTAAGTTCATTGTGTTTTTAACCC 57.119 30.769 0.00 0.00 0.00 4.11
2019 2186 8.641541 AGATTGGATGTAAGTTCATTGTGTTTT 58.358 29.630 0.00 0.00 0.00 2.43
2024 2191 7.092716 GCAAAGATTGGATGTAAGTTCATTGT 58.907 34.615 0.00 0.00 0.00 2.71
2031 2198 9.851686 TCTAATATGCAAAGATTGGATGTAAGT 57.148 29.630 7.27 0.00 42.01 2.24
2038 2205 9.187996 TGTTCATTCTAATATGCAAAGATTGGA 57.812 29.630 0.00 0.00 34.77 3.53
2061 2228 9.464714 TTTGTGCGTTTGTATTGTTTATATGTT 57.535 25.926 0.00 0.00 0.00 2.71
2062 2229 9.123709 CTTTGTGCGTTTGTATTGTTTATATGT 57.876 29.630 0.00 0.00 0.00 2.29
2065 2232 8.343366 TGTCTTTGTGCGTTTGTATTGTTTATA 58.657 29.630 0.00 0.00 0.00 0.98
2071 2238 5.940603 TTTGTCTTTGTGCGTTTGTATTG 57.059 34.783 0.00 0.00 0.00 1.90
2074 2241 9.171701 GTAATATTTTGTCTTTGTGCGTTTGTA 57.828 29.630 0.00 0.00 0.00 2.41
2077 2244 6.129300 GCGTAATATTTTGTCTTTGTGCGTTT 60.129 34.615 0.00 0.00 0.00 3.60
2098 2265 3.807538 GGCGTGGTCGAGAGCGTA 61.808 66.667 0.00 0.00 39.71 4.42
2101 2268 3.404141 GAGAGGCGTGGTCGAGAGC 62.404 68.421 0.00 0.00 39.71 4.09
2102 2269 1.309499 AAGAGAGGCGTGGTCGAGAG 61.309 60.000 0.00 0.00 39.71 3.20
2103 2270 1.303398 AAGAGAGGCGTGGTCGAGA 60.303 57.895 0.00 0.00 39.71 4.04
2104 2271 1.137825 GAAGAGAGGCGTGGTCGAG 59.862 63.158 0.00 0.00 39.71 4.04
2105 2272 2.687805 CGAAGAGAGGCGTGGTCGA 61.688 63.158 0.00 0.00 39.71 4.20
2106 2273 1.642037 TACGAAGAGAGGCGTGGTCG 61.642 60.000 0.00 0.00 41.35 4.79
2107 2274 0.179169 GTACGAAGAGAGGCGTGGTC 60.179 60.000 0.00 0.00 41.35 4.02
2108 2275 1.881602 GTACGAAGAGAGGCGTGGT 59.118 57.895 0.00 0.00 41.35 4.16
2109 2276 1.226323 CGTACGAAGAGAGGCGTGG 60.226 63.158 10.44 0.00 41.35 4.94
2110 2277 0.723414 TACGTACGAAGAGAGGCGTG 59.277 55.000 24.41 0.00 41.35 5.34
2111 2278 1.005340 CTACGTACGAAGAGAGGCGT 58.995 55.000 24.41 0.00 43.86 5.68
2112 2279 0.316032 GCTACGTACGAAGAGAGGCG 60.316 60.000 24.41 0.26 0.00 5.52
2113 2280 0.029167 GGCTACGTACGAAGAGAGGC 59.971 60.000 24.41 17.21 0.00 4.70
2114 2281 1.331138 CAGGCTACGTACGAAGAGAGG 59.669 57.143 24.41 1.71 0.00 3.69
2115 2282 2.277969 TCAGGCTACGTACGAAGAGAG 58.722 52.381 24.41 11.26 0.00 3.20
2116 2283 2.093816 TCTCAGGCTACGTACGAAGAGA 60.094 50.000 24.41 18.80 0.00 3.10
2117 2284 2.277969 TCTCAGGCTACGTACGAAGAG 58.722 52.381 24.41 16.13 0.00 2.85
2118 2285 2.391616 TCTCAGGCTACGTACGAAGA 57.608 50.000 24.41 9.34 0.00 2.87
2119 2286 3.694535 ATTCTCAGGCTACGTACGAAG 57.305 47.619 24.41 7.24 0.00 3.79
2120 2287 3.766151 CAATTCTCAGGCTACGTACGAA 58.234 45.455 24.41 2.13 0.00 3.85
2121 2288 2.479049 GCAATTCTCAGGCTACGTACGA 60.479 50.000 24.41 4.69 0.00 3.43
2122 2289 1.852895 GCAATTCTCAGGCTACGTACG 59.147 52.381 15.01 15.01 0.00 3.67
2123 2290 2.202566 GGCAATTCTCAGGCTACGTAC 58.797 52.381 0.00 0.00 0.00 3.67
2124 2291 1.138266 GGGCAATTCTCAGGCTACGTA 59.862 52.381 0.00 0.00 0.00 3.57
2125 2292 0.107654 GGGCAATTCTCAGGCTACGT 60.108 55.000 0.00 0.00 0.00 3.57
2126 2293 0.107703 TGGGCAATTCTCAGGCTACG 60.108 55.000 0.00 0.00 0.00 3.51
2127 2294 1.065126 AGTGGGCAATTCTCAGGCTAC 60.065 52.381 0.00 0.00 41.13 3.58
2128 2295 1.289160 AGTGGGCAATTCTCAGGCTA 58.711 50.000 0.00 0.00 0.00 3.93
2129 2296 0.407139 AAGTGGGCAATTCTCAGGCT 59.593 50.000 0.00 0.00 0.00 4.58
2130 2297 0.813821 GAAGTGGGCAATTCTCAGGC 59.186 55.000 0.00 0.00 33.14 4.85
2131 2298 1.272092 TGGAAGTGGGCAATTCTCAGG 60.272 52.381 0.00 0.00 35.88 3.86
2132 2299 1.815003 GTGGAAGTGGGCAATTCTCAG 59.185 52.381 0.00 0.00 35.88 3.35
2133 2300 1.547675 GGTGGAAGTGGGCAATTCTCA 60.548 52.381 0.00 0.00 35.88 3.27
2134 2301 1.177401 GGTGGAAGTGGGCAATTCTC 58.823 55.000 0.00 0.00 35.88 2.87
2135 2302 0.251787 GGGTGGAAGTGGGCAATTCT 60.252 55.000 0.00 0.00 35.88 2.40
2136 2303 1.257750 GGGGTGGAAGTGGGCAATTC 61.258 60.000 0.00 0.00 34.94 2.17
2137 2304 1.229177 GGGGTGGAAGTGGGCAATT 60.229 57.895 0.00 0.00 0.00 2.32
2138 2305 0.849094 TAGGGGTGGAAGTGGGCAAT 60.849 55.000 0.00 0.00 0.00 3.56
2139 2306 0.849094 ATAGGGGTGGAAGTGGGCAA 60.849 55.000 0.00 0.00 0.00 4.52
2140 2307 1.230149 ATAGGGGTGGAAGTGGGCA 60.230 57.895 0.00 0.00 0.00 5.36
2141 2308 1.279025 TGATAGGGGTGGAAGTGGGC 61.279 60.000 0.00 0.00 0.00 5.36
2142 2309 1.295020 TTGATAGGGGTGGAAGTGGG 58.705 55.000 0.00 0.00 0.00 4.61
2143 2310 2.936202 CATTGATAGGGGTGGAAGTGG 58.064 52.381 0.00 0.00 0.00 4.00
2144 2311 2.301346 GCATTGATAGGGGTGGAAGTG 58.699 52.381 0.00 0.00 0.00 3.16
2145 2312 1.922447 TGCATTGATAGGGGTGGAAGT 59.078 47.619 0.00 0.00 0.00 3.01
2146 2313 2.734755 TGCATTGATAGGGGTGGAAG 57.265 50.000 0.00 0.00 0.00 3.46
2147 2314 3.298619 CATTGCATTGATAGGGGTGGAA 58.701 45.455 2.33 0.00 0.00 3.53
2148 2315 2.424667 CCATTGCATTGATAGGGGTGGA 60.425 50.000 10.14 0.00 0.00 4.02
2149 2316 1.965643 CCATTGCATTGATAGGGGTGG 59.034 52.381 10.14 0.00 0.00 4.61
2150 2317 2.669781 ACCATTGCATTGATAGGGGTG 58.330 47.619 10.14 0.00 0.00 4.61
2151 2318 4.410099 CATACCATTGCATTGATAGGGGT 58.590 43.478 10.14 1.26 0.00 4.95
2152 2319 3.194116 GCATACCATTGCATTGATAGGGG 59.806 47.826 10.14 0.00 42.31 4.79
2153 2320 4.445452 GCATACCATTGCATTGATAGGG 57.555 45.455 10.14 0.00 42.31 3.53
2163 2330 4.906065 TTCTCAAGATGCATACCATTGC 57.094 40.909 0.00 0.00 43.07 3.56
2164 2331 7.437267 GGAATTTTCTCAAGATGCATACCATTG 59.563 37.037 0.00 3.16 33.29 2.82
2165 2332 7.343833 AGGAATTTTCTCAAGATGCATACCATT 59.656 33.333 0.00 0.00 33.29 3.16
2166 2333 6.837568 AGGAATTTTCTCAAGATGCATACCAT 59.162 34.615 0.00 0.00 36.70 3.55
2167 2334 6.189859 AGGAATTTTCTCAAGATGCATACCA 58.810 36.000 0.00 0.00 0.00 3.25
2168 2335 6.705863 AGGAATTTTCTCAAGATGCATACC 57.294 37.500 0.00 0.00 0.00 2.73
2171 2338 9.595823 CAAATAAGGAATTTTCTCAAGATGCAT 57.404 29.630 0.00 0.00 35.54 3.96
2172 2339 8.805175 TCAAATAAGGAATTTTCTCAAGATGCA 58.195 29.630 0.00 0.00 35.54 3.96
2173 2340 9.080915 GTCAAATAAGGAATTTTCTCAAGATGC 57.919 33.333 0.00 0.00 35.54 3.91
2176 2343 9.354673 AGTGTCAAATAAGGAATTTTCTCAAGA 57.645 29.630 0.00 0.00 35.54 3.02
2177 2344 9.403110 CAGTGTCAAATAAGGAATTTTCTCAAG 57.597 33.333 0.00 0.00 35.54 3.02
2178 2345 8.912988 ACAGTGTCAAATAAGGAATTTTCTCAA 58.087 29.630 0.00 0.00 35.54 3.02
2179 2346 8.463930 ACAGTGTCAAATAAGGAATTTTCTCA 57.536 30.769 0.00 0.00 35.54 3.27
2180 2347 8.787852 AGACAGTGTCAAATAAGGAATTTTCTC 58.212 33.333 24.73 0.00 35.54 2.87
2181 2348 8.697507 AGACAGTGTCAAATAAGGAATTTTCT 57.302 30.769 24.73 0.00 35.54 2.52
2195 2362 9.403583 AGGAACTAAATTTTAAGACAGTGTCAA 57.596 29.630 24.73 10.81 36.02 3.18
2196 2363 8.974060 AGGAACTAAATTTTAAGACAGTGTCA 57.026 30.769 24.73 4.33 36.02 3.58
2208 2375 8.593679 CCAGGGTCAAATAAGGAACTAAATTTT 58.406 33.333 0.00 0.00 38.49 1.82
2209 2376 7.953493 TCCAGGGTCAAATAAGGAACTAAATTT 59.047 33.333 0.00 0.00 38.49 1.82
2210 2377 7.475299 TCCAGGGTCAAATAAGGAACTAAATT 58.525 34.615 0.00 0.00 38.49 1.82
2211 2378 7.039722 TCCAGGGTCAAATAAGGAACTAAAT 57.960 36.000 0.00 0.00 38.49 1.40
2212 2379 6.457159 TCCAGGGTCAAATAAGGAACTAAA 57.543 37.500 0.00 0.00 38.49 1.85
2213 2380 6.457159 TTCCAGGGTCAAATAAGGAACTAA 57.543 37.500 0.00 0.00 38.49 2.24
2214 2381 6.457159 TTTCCAGGGTCAAATAAGGAACTA 57.543 37.500 0.00 0.00 38.49 2.24
2216 2383 6.413783 TTTTTCCAGGGTCAAATAAGGAAC 57.586 37.500 0.00 0.00 35.10 3.62
2240 2407 9.682465 GGACTAGTGTTAAATAGGGAAGAAAAT 57.318 33.333 0.00 0.00 0.00 1.82
2241 2408 8.887393 AGGACTAGTGTTAAATAGGGAAGAAAA 58.113 33.333 0.00 0.00 0.00 2.29
2242 2409 8.445361 AGGACTAGTGTTAAATAGGGAAGAAA 57.555 34.615 0.00 0.00 0.00 2.52
2243 2410 9.551339 TTAGGACTAGTGTTAAATAGGGAAGAA 57.449 33.333 0.00 0.00 0.00 2.52
2244 2411 9.551339 TTTAGGACTAGTGTTAAATAGGGAAGA 57.449 33.333 0.00 0.00 0.00 2.87
2262 2429 9.993454 GTCGTATAGGGAATAAAATTTAGGACT 57.007 33.333 0.00 0.00 0.00 3.85
2263 2430 9.768662 TGTCGTATAGGGAATAAAATTTAGGAC 57.231 33.333 0.00 0.00 0.00 3.85
2264 2431 9.768662 GTGTCGTATAGGGAATAAAATTTAGGA 57.231 33.333 0.00 0.00 0.00 2.94
2265 2432 9.774413 AGTGTCGTATAGGGAATAAAATTTAGG 57.226 33.333 0.00 0.00 0.00 2.69
2268 2435 9.117183 GGAAGTGTCGTATAGGGAATAAAATTT 57.883 33.333 0.00 0.00 0.00 1.82
2269 2436 7.440255 CGGAAGTGTCGTATAGGGAATAAAATT 59.560 37.037 0.00 0.00 0.00 1.82
2270 2437 6.927381 CGGAAGTGTCGTATAGGGAATAAAAT 59.073 38.462 0.00 0.00 0.00 1.82
2271 2438 6.127366 ACGGAAGTGTCGTATAGGGAATAAAA 60.127 38.462 0.00 0.00 46.97 1.52
2272 2439 5.360714 ACGGAAGTGTCGTATAGGGAATAAA 59.639 40.000 0.00 0.00 46.97 1.40
2273 2440 4.889409 ACGGAAGTGTCGTATAGGGAATAA 59.111 41.667 0.00 0.00 46.97 1.40
2274 2441 4.464008 ACGGAAGTGTCGTATAGGGAATA 58.536 43.478 0.00 0.00 46.97 1.75
2275 2442 3.294214 ACGGAAGTGTCGTATAGGGAAT 58.706 45.455 0.00 0.00 46.97 3.01
2276 2443 2.726821 ACGGAAGTGTCGTATAGGGAA 58.273 47.619 0.00 0.00 46.97 3.97
2277 2444 2.425143 ACGGAAGTGTCGTATAGGGA 57.575 50.000 0.00 0.00 46.97 4.20
2287 2454 8.447834 ATTTAGGCTTAAAATGGACGGAAGTGT 61.448 37.037 5.01 0.00 37.04 3.55
2288 2455 6.127730 ATTTAGGCTTAAAATGGACGGAAGTG 60.128 38.462 5.01 0.00 37.04 3.16
2289 2456 5.949952 ATTTAGGCTTAAAATGGACGGAAGT 59.050 36.000 5.01 0.00 38.59 3.01
2290 2457 5.890424 TTTAGGCTTAAAATGGACGGAAG 57.110 39.130 0.00 0.00 0.00 3.46
2291 2458 5.946972 TCATTTAGGCTTAAAATGGACGGAA 59.053 36.000 18.10 0.96 42.17 4.30
2292 2459 5.355910 GTCATTTAGGCTTAAAATGGACGGA 59.644 40.000 18.10 1.52 42.17 4.69
2293 2460 5.124776 TGTCATTTAGGCTTAAAATGGACGG 59.875 40.000 18.10 0.00 42.17 4.79
2294 2461 6.027749 GTGTCATTTAGGCTTAAAATGGACG 58.972 40.000 18.10 0.00 42.17 4.79
2295 2462 6.152831 AGGTGTCATTTAGGCTTAAAATGGAC 59.847 38.462 18.10 16.98 42.17 4.02
2296 2463 6.152661 CAGGTGTCATTTAGGCTTAAAATGGA 59.847 38.462 18.10 1.53 42.17 3.41
2297 2464 6.152661 TCAGGTGTCATTTAGGCTTAAAATGG 59.847 38.462 18.10 5.82 42.17 3.16
2298 2465 7.156876 TCAGGTGTCATTTAGGCTTAAAATG 57.843 36.000 14.02 14.02 42.89 2.32
2299 2466 7.775053 TTCAGGTGTCATTTAGGCTTAAAAT 57.225 32.000 5.01 0.00 32.80 1.82
2300 2467 7.589958 TTTCAGGTGTCATTTAGGCTTAAAA 57.410 32.000 5.01 0.00 32.80 1.52
2301 2468 7.504238 TCTTTTCAGGTGTCATTTAGGCTTAAA 59.496 33.333 3.24 3.24 33.54 1.52
2302 2469 7.001674 TCTTTTCAGGTGTCATTTAGGCTTAA 58.998 34.615 0.00 0.00 0.00 1.85
2303 2470 6.430000 GTCTTTTCAGGTGTCATTTAGGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2304 2471 5.241728 GTCTTTTCAGGTGTCATTTAGGCTT 59.758 40.000 0.00 0.00 0.00 4.35
2305 2472 4.762251 GTCTTTTCAGGTGTCATTTAGGCT 59.238 41.667 0.00 0.00 0.00 4.58
2306 2473 4.378459 CGTCTTTTCAGGTGTCATTTAGGC 60.378 45.833 0.00 0.00 0.00 3.93
2307 2474 4.994852 TCGTCTTTTCAGGTGTCATTTAGG 59.005 41.667 0.00 0.00 0.00 2.69
2308 2475 6.727824 ATCGTCTTTTCAGGTGTCATTTAG 57.272 37.500 0.00 0.00 0.00 1.85
2309 2476 7.504924 AAATCGTCTTTTCAGGTGTCATTTA 57.495 32.000 0.00 0.00 0.00 1.40
2310 2477 6.391227 AAATCGTCTTTTCAGGTGTCATTT 57.609 33.333 0.00 0.00 0.00 2.32
2311 2478 6.208644 CAAAATCGTCTTTTCAGGTGTCATT 58.791 36.000 0.00 0.00 0.00 2.57
2312 2479 5.762045 CAAAATCGTCTTTTCAGGTGTCAT 58.238 37.500 0.00 0.00 0.00 3.06
2313 2480 4.497340 GCAAAATCGTCTTTTCAGGTGTCA 60.497 41.667 0.00 0.00 0.00 3.58
2314 2481 3.975035 GCAAAATCGTCTTTTCAGGTGTC 59.025 43.478 0.00 0.00 0.00 3.67
2315 2482 3.243401 GGCAAAATCGTCTTTTCAGGTGT 60.243 43.478 0.00 0.00 0.00 4.16
2316 2483 3.004734 AGGCAAAATCGTCTTTTCAGGTG 59.995 43.478 0.00 0.00 0.00 4.00
2317 2484 3.222603 AGGCAAAATCGTCTTTTCAGGT 58.777 40.909 0.00 0.00 0.00 4.00
2318 2485 3.503748 AGAGGCAAAATCGTCTTTTCAGG 59.496 43.478 0.00 0.00 0.00 3.86
2319 2486 4.214119 TGAGAGGCAAAATCGTCTTTTCAG 59.786 41.667 0.00 0.00 32.05 3.02
2320 2487 4.133820 TGAGAGGCAAAATCGTCTTTTCA 58.866 39.130 0.00 0.00 32.05 2.69
2321 2488 4.749245 TGAGAGGCAAAATCGTCTTTTC 57.251 40.909 0.00 0.00 32.05 2.29
2322 2489 4.616835 GCATGAGAGGCAAAATCGTCTTTT 60.617 41.667 0.00 0.00 32.05 2.27
2323 2490 3.119708 GCATGAGAGGCAAAATCGTCTTT 60.120 43.478 0.00 0.00 32.05 2.52
2324 2491 2.421424 GCATGAGAGGCAAAATCGTCTT 59.579 45.455 0.00 0.00 32.05 3.01
2325 2492 2.012673 GCATGAGAGGCAAAATCGTCT 58.987 47.619 0.00 0.00 34.30 4.18
2326 2493 1.267732 CGCATGAGAGGCAAAATCGTC 60.268 52.381 0.00 0.00 0.00 4.20
2327 2494 0.729116 CGCATGAGAGGCAAAATCGT 59.271 50.000 0.00 0.00 0.00 3.73
2328 2495 0.028505 CCGCATGAGAGGCAAAATCG 59.971 55.000 0.00 0.00 0.00 3.34
2329 2496 1.098050 ACCGCATGAGAGGCAAAATC 58.902 50.000 0.00 0.00 38.42 2.17
2330 2497 2.418368 TACCGCATGAGAGGCAAAAT 57.582 45.000 0.00 0.00 38.42 1.82
2331 2498 2.418368 ATACCGCATGAGAGGCAAAA 57.582 45.000 0.00 0.00 38.42 2.44
2332 2499 3.181455 ACATATACCGCATGAGAGGCAAA 60.181 43.478 0.00 0.00 38.42 3.68
2333 2500 2.368548 ACATATACCGCATGAGAGGCAA 59.631 45.455 0.00 0.00 38.42 4.52
2334 2501 1.970640 ACATATACCGCATGAGAGGCA 59.029 47.619 0.00 0.00 38.42 4.75
2335 2502 2.289072 ACACATATACCGCATGAGAGGC 60.289 50.000 0.00 0.00 38.42 4.70
2336 2503 3.243873 ACACACATATACCGCATGAGAGG 60.244 47.826 0.00 0.00 41.02 3.69
2337 2504 3.737774 CACACACATATACCGCATGAGAG 59.262 47.826 0.00 0.00 0.00 3.20
2338 2505 3.716601 CACACACATATACCGCATGAGA 58.283 45.455 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.