Multiple sequence alignment - TraesCS3A01G207000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G207000 chr3A 100.000 6505 0 0 1 6505 364199268 364192764 0.000000e+00 12013.0
1 TraesCS3A01G207000 chr3A 91.633 251 16 4 1961 2210 688140713 688140959 6.250000e-90 342.0
2 TraesCS3A01G207000 chr3A 92.417 211 14 1 1 209 485604313 485604523 3.810000e-77 300.0
3 TraesCS3A01G207000 chr3A 89.677 155 16 0 1597 1751 688140546 688140700 1.430000e-46 198.0
4 TraesCS3A01G207000 chr3A 79.061 277 32 11 1286 1557 688140290 688140545 4.030000e-37 167.0
5 TraesCS3A01G207000 chr3B 94.456 4347 143 31 766 5082 375500531 375496253 0.000000e+00 6602.0
6 TraesCS3A01G207000 chr3B 87.406 397 37 5 252 645 375528343 375527957 1.660000e-120 444.0
7 TraesCS3A01G207000 chr3B 88.933 253 21 6 1959 2210 799775926 799776172 8.190000e-79 305.0
8 TraesCS3A01G207000 chr3B 91.262 206 16 1 1 204 810143105 810143310 4.970000e-71 279.0
9 TraesCS3A01G207000 chr3B 86.577 149 20 0 1603 1751 799775767 799775915 1.450000e-36 165.0
10 TraesCS3A01G207000 chr3B 79.532 171 12 14 636 786 375500708 375500541 4.150000e-17 100.0
11 TraesCS3A01G207000 chr3D 95.339 3347 107 20 1750 5079 275995738 275999052 0.000000e+00 5271.0
12 TraesCS3A01G207000 chr3D 90.735 1565 92 29 203 1751 275994122 275995649 0.000000e+00 2037.0
13 TraesCS3A01G207000 chr6D 92.136 1386 106 3 5121 6505 107936487 107935104 0.000000e+00 1953.0
14 TraesCS3A01G207000 chr7D 91.052 1397 115 9 5111 6505 88024554 88025942 0.000000e+00 1879.0
15 TraesCS3A01G207000 chr7D 91.406 1373 109 6 5135 6505 144150685 144149320 0.000000e+00 1873.0
16 TraesCS3A01G207000 chr5D 91.033 1394 121 4 5115 6505 546071170 546069778 0.000000e+00 1879.0
17 TraesCS3A01G207000 chr5D 77.181 149 18 9 563 704 322016274 322016413 9.050000e-09 73.1
18 TraesCS3A01G207000 chr7B 90.547 1407 128 5 5101 6505 682744663 682746066 0.000000e+00 1857.0
19 TraesCS3A01G207000 chr7B 88.889 54 6 0 1195 1248 689887697 689887644 4.210000e-07 67.6
20 TraesCS3A01G207000 chr2B 90.765 1386 120 5 5121 6505 756219377 756220755 0.000000e+00 1844.0
21 TraesCS3A01G207000 chr1B 90.355 1379 129 4 5126 6502 567690402 567691778 0.000000e+00 1807.0
22 TraesCS3A01G207000 chr1B 90.400 250 21 2 1961 2210 248235135 248235381 6.290000e-85 326.0
23 TraesCS3A01G207000 chr1B 90.909 132 7 3 1117 1248 248234593 248234719 8.670000e-39 172.0
24 TraesCS3A01G207000 chr1B 92.593 54 4 0 1195 1248 688997139 688997192 1.940000e-10 78.7
25 TraesCS3A01G207000 chr7A 90.230 1392 122 14 5120 6505 269275164 269273781 0.000000e+00 1805.0
26 TraesCS3A01G207000 chr7A 92.593 54 4 0 1195 1248 37300361 37300308 1.940000e-10 78.7
27 TraesCS3A01G207000 chr5A 89.586 1402 137 8 5108 6502 664255770 664257169 0.000000e+00 1772.0
28 TraesCS3A01G207000 chr5A 92.718 206 13 1 3 206 502172613 502172408 4.930000e-76 296.0
29 TraesCS3A01G207000 chr5A 91.346 208 16 1 2 207 11888066 11887859 3.840000e-72 283.0
30 TraesCS3A01G207000 chr5A 79.739 153 23 6 563 708 417290692 417290843 3.210000e-18 104.0
31 TraesCS3A01G207000 chr5A 88.060 67 8 0 3236 3302 231065634 231065568 5.410000e-11 80.5
32 TraesCS3A01G207000 chr1A 91.393 244 17 3 1967 2210 9819172 9818933 1.350000e-86 331.0
33 TraesCS3A01G207000 chr1A 91.787 207 15 2 1 205 277407078 277406872 2.970000e-73 287.0
34 TraesCS3A01G207000 chr1A 75.439 456 85 20 3093 3529 591155576 591155129 5.150000e-46 196.0
35 TraesCS3A01G207000 chr1A 88.387 155 18 0 1597 1751 9819344 9819190 3.100000e-43 187.0
36 TraesCS3A01G207000 chr1A 80.000 275 26 13 1289 1557 9819596 9819345 6.700000e-40 176.0
37 TraesCS3A01G207000 chr1A 87.879 132 11 3 1117 1248 9819717 9819591 4.060000e-32 150.0
38 TraesCS3A01G207000 chr1A 86.957 92 11 1 991 1082 591157541 591157451 1.150000e-17 102.0
39 TraesCS3A01G207000 chrUn 89.286 252 25 2 1959 2210 90339621 90339870 1.360000e-81 315.0
40 TraesCS3A01G207000 chrUn 89.286 252 25 2 1959 2210 290523846 290524095 1.360000e-81 315.0
41 TraesCS3A01G207000 chrUn 79.422 277 28 14 1286 1557 90339217 90339469 1.120000e-37 169.0
42 TraesCS3A01G207000 chrUn 79.422 277 28 14 1286 1557 290523442 290523694 1.120000e-37 169.0
43 TraesCS3A01G207000 chrUn 79.355 155 18 3 1597 1751 90339470 90339610 5.370000e-16 97.1
44 TraesCS3A01G207000 chrUn 79.355 155 18 3 1597 1751 290523695 290523835 5.370000e-16 97.1
45 TraesCS3A01G207000 chr6B 88.538 253 23 4 1959 2210 337884740 337884987 1.060000e-77 302.0
46 TraesCS3A01G207000 chr6B 89.552 67 4 1 1320 1386 337876278 337876341 1.500000e-11 82.4
47 TraesCS3A01G207000 chr6A 92.683 205 13 1 1 203 118285262 118285466 1.770000e-75 294.0
48 TraesCS3A01G207000 chr2A 91.905 210 15 1 1 208 672844375 672844584 6.380000e-75 292.0
49 TraesCS3A01G207000 chr2A 88.496 226 22 4 1 224 556285740 556285517 2.990000e-68 270.0
50 TraesCS3A01G207000 chr4A 92.424 198 13 1 1 196 166877967 166878164 1.380000e-71 281.0
51 TraesCS3A01G207000 chr1D 76.190 462 77 24 3093 3529 492648345 492647892 5.110000e-51 213.0
52 TraesCS3A01G207000 chr1D 92.593 54 4 0 1195 1248 492650295 492650242 1.940000e-10 78.7
53 TraesCS3A01G207000 chr4B 79.487 234 22 11 1320 1550 97560292 97560082 6.800000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G207000 chr3A 364192764 364199268 6504 True 12013.000000 12013 100.000000 1 6505 1 chr3A.!!$R1 6504
1 TraesCS3A01G207000 chr3A 688140290 688140959 669 False 235.666667 342 86.790333 1286 2210 3 chr3A.!!$F2 924
2 TraesCS3A01G207000 chr3B 375496253 375500708 4455 True 3351.000000 6602 86.994000 636 5082 2 chr3B.!!$R2 4446
3 TraesCS3A01G207000 chr3D 275994122 275999052 4930 False 3654.000000 5271 93.037000 203 5079 2 chr3D.!!$F1 4876
4 TraesCS3A01G207000 chr6D 107935104 107936487 1383 True 1953.000000 1953 92.136000 5121 6505 1 chr6D.!!$R1 1384
5 TraesCS3A01G207000 chr7D 88024554 88025942 1388 False 1879.000000 1879 91.052000 5111 6505 1 chr7D.!!$F1 1394
6 TraesCS3A01G207000 chr7D 144149320 144150685 1365 True 1873.000000 1873 91.406000 5135 6505 1 chr7D.!!$R1 1370
7 TraesCS3A01G207000 chr5D 546069778 546071170 1392 True 1879.000000 1879 91.033000 5115 6505 1 chr5D.!!$R1 1390
8 TraesCS3A01G207000 chr7B 682744663 682746066 1403 False 1857.000000 1857 90.547000 5101 6505 1 chr7B.!!$F1 1404
9 TraesCS3A01G207000 chr2B 756219377 756220755 1378 False 1844.000000 1844 90.765000 5121 6505 1 chr2B.!!$F1 1384
10 TraesCS3A01G207000 chr1B 567690402 567691778 1376 False 1807.000000 1807 90.355000 5126 6502 1 chr1B.!!$F1 1376
11 TraesCS3A01G207000 chr1B 248234593 248235381 788 False 249.000000 326 90.654500 1117 2210 2 chr1B.!!$F3 1093
12 TraesCS3A01G207000 chr7A 269273781 269275164 1383 True 1805.000000 1805 90.230000 5120 6505 1 chr7A.!!$R2 1385
13 TraesCS3A01G207000 chr5A 664255770 664257169 1399 False 1772.000000 1772 89.586000 5108 6502 1 chr5A.!!$F2 1394
14 TraesCS3A01G207000 chr1A 9818933 9819717 784 True 211.000000 331 86.914750 1117 2210 4 chr1A.!!$R2 1093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 831 0.109342 CACAGGCACCTCCACTTTCT 59.891 55.000 0.00 0.00 37.29 2.52 F
910 970 0.345502 ACCCTAGCTACCAATCCCCA 59.654 55.000 0.00 0.00 0.00 4.96 F
1254 1314 0.529773 AAGCTTGTGAGTTGACGCGA 60.530 50.000 15.93 0.00 0.00 5.87 F
1257 1317 0.927537 CTTGTGAGTTGACGCGACAA 59.072 50.000 19.59 19.59 0.00 3.18 F
1267 1327 1.000394 TGACGCGACAATTCTCTTGGA 60.000 47.619 15.93 0.00 0.00 3.53 F
1773 1981 1.194218 GGTAAATGCAGCCCAACCAT 58.806 50.000 0.00 0.00 0.00 3.55 F
2939 3161 1.676014 GCGAGTGTAAGCACCCATCTT 60.676 52.381 0.00 0.00 46.35 2.40 F
4576 4804 0.605589 CGTCCCAGAGAAACTCAGCT 59.394 55.000 0.00 0.00 32.06 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2145 0.662619 TGAACAGAACAAAGCCTGCG 59.337 50.000 0.00 0.0 33.90 5.18 R
2555 2763 4.988540 GGACAAGATGTAAGCGCATATACA 59.011 41.667 18.70 18.7 36.54 2.29 R
2720 2928 6.772716 CCCAGTAAAGTAACATCAGCCATTAT 59.227 38.462 0.00 0.0 0.00 1.28 R
3019 3242 7.838193 AGGGCAAGAGAGATTTAATGAAGAAAT 59.162 33.333 0.00 0.0 0.00 2.17 R
3044 3267 9.474920 TTCTTTAAACAAGATGGTGCATTTAAG 57.525 29.630 0.00 0.0 0.00 1.85 R
3768 3995 1.197721 CAGCGGCCTAAAACAACAGAG 59.802 52.381 0.00 0.0 0.00 3.35 R
4847 5083 0.252193 CCAGCCCCCATTTCTTTGGA 60.252 55.000 0.00 0.0 39.25 3.53 R
6289 6539 0.729140 CGCGGCGAGCTTTTCAAAAT 60.729 50.000 19.16 0.0 45.59 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.264373 CAGTAAGTGGATACCCATTCATTTC 57.736 40.000 0.00 0.00 45.68 2.17
26 27 7.056635 CAGTAAGTGGATACCCATTCATTTCT 58.943 38.462 0.00 0.00 45.68 2.52
27 28 7.227512 CAGTAAGTGGATACCCATTCATTTCTC 59.772 40.741 0.00 0.00 45.68 2.87
28 29 5.053978 AGTGGATACCCATTCATTTCTCC 57.946 43.478 0.00 0.00 45.68 3.71
29 30 4.141158 AGTGGATACCCATTCATTTCTCCC 60.141 45.833 0.00 0.00 45.68 4.30
30 31 3.140144 TGGATACCCATTCATTTCTCCCC 59.860 47.826 0.00 0.00 37.58 4.81
31 32 3.399305 GGATACCCATTCATTTCTCCCCT 59.601 47.826 0.00 0.00 0.00 4.79
32 33 4.507512 GGATACCCATTCATTTCTCCCCTC 60.508 50.000 0.00 0.00 0.00 4.30
33 34 2.287584 ACCCATTCATTTCTCCCCTCA 58.712 47.619 0.00 0.00 0.00 3.86
34 35 2.654385 ACCCATTCATTTCTCCCCTCAA 59.346 45.455 0.00 0.00 0.00 3.02
35 36 3.026694 CCCATTCATTTCTCCCCTCAAC 58.973 50.000 0.00 0.00 0.00 3.18
36 37 3.026694 CCATTCATTTCTCCCCTCAACC 58.973 50.000 0.00 0.00 0.00 3.77
37 38 3.564133 CCATTCATTTCTCCCCTCAACCA 60.564 47.826 0.00 0.00 0.00 3.67
38 39 3.893753 TTCATTTCTCCCCTCAACCAA 57.106 42.857 0.00 0.00 0.00 3.67
39 40 4.402616 TTCATTTCTCCCCTCAACCAAT 57.597 40.909 0.00 0.00 0.00 3.16
40 41 3.968265 TCATTTCTCCCCTCAACCAATC 58.032 45.455 0.00 0.00 0.00 2.67
41 42 3.333381 TCATTTCTCCCCTCAACCAATCA 59.667 43.478 0.00 0.00 0.00 2.57
42 43 3.893753 TTTCTCCCCTCAACCAATCAA 57.106 42.857 0.00 0.00 0.00 2.57
43 44 3.893753 TTCTCCCCTCAACCAATCAAA 57.106 42.857 0.00 0.00 0.00 2.69
44 45 4.402616 TTCTCCCCTCAACCAATCAAAT 57.597 40.909 0.00 0.00 0.00 2.32
45 46 5.528600 TTCTCCCCTCAACCAATCAAATA 57.471 39.130 0.00 0.00 0.00 1.40
46 47 5.116084 TCTCCCCTCAACCAATCAAATAG 57.884 43.478 0.00 0.00 0.00 1.73
47 48 4.788075 TCTCCCCTCAACCAATCAAATAGA 59.212 41.667 0.00 0.00 0.00 1.98
48 49 5.433051 TCTCCCCTCAACCAATCAAATAGAT 59.567 40.000 0.00 0.00 39.09 1.98
49 50 5.694995 TCCCCTCAACCAATCAAATAGATC 58.305 41.667 0.00 0.00 35.39 2.75
50 51 4.829492 CCCCTCAACCAATCAAATAGATCC 59.171 45.833 0.00 0.00 35.39 3.36
51 52 5.399497 CCCCTCAACCAATCAAATAGATCCT 60.399 44.000 0.00 0.00 35.39 3.24
52 53 6.131961 CCCTCAACCAATCAAATAGATCCTT 58.868 40.000 0.00 0.00 35.39 3.36
53 54 6.608808 CCCTCAACCAATCAAATAGATCCTTT 59.391 38.462 0.00 0.00 35.39 3.11
54 55 7.124750 CCCTCAACCAATCAAATAGATCCTTTT 59.875 37.037 0.00 0.00 35.39 2.27
55 56 8.193438 CCTCAACCAATCAAATAGATCCTTTTC 58.807 37.037 0.00 0.00 35.39 2.29
56 57 8.648698 TCAACCAATCAAATAGATCCTTTTCA 57.351 30.769 0.00 0.00 35.39 2.69
57 58 8.522830 TCAACCAATCAAATAGATCCTTTTCAC 58.477 33.333 0.00 0.00 35.39 3.18
58 59 7.410120 ACCAATCAAATAGATCCTTTTCACC 57.590 36.000 0.00 0.00 35.39 4.02
59 60 6.953520 ACCAATCAAATAGATCCTTTTCACCA 59.046 34.615 0.00 0.00 35.39 4.17
60 61 7.454380 ACCAATCAAATAGATCCTTTTCACCAA 59.546 33.333 0.00 0.00 35.39 3.67
61 62 7.977853 CCAATCAAATAGATCCTTTTCACCAAG 59.022 37.037 0.00 0.00 35.39 3.61
62 63 8.526147 CAATCAAATAGATCCTTTTCACCAAGT 58.474 33.333 0.00 0.00 35.39 3.16
63 64 8.655935 ATCAAATAGATCCTTTTCACCAAGTT 57.344 30.769 0.00 0.00 28.20 2.66
64 65 8.477419 TCAAATAGATCCTTTTCACCAAGTTT 57.523 30.769 0.00 0.00 0.00 2.66
65 66 8.576442 TCAAATAGATCCTTTTCACCAAGTTTC 58.424 33.333 0.00 0.00 0.00 2.78
66 67 8.579863 CAAATAGATCCTTTTCACCAAGTTTCT 58.420 33.333 0.00 0.00 0.00 2.52
67 68 8.712228 AATAGATCCTTTTCACCAAGTTTCTT 57.288 30.769 0.00 0.00 0.00 2.52
68 69 9.807921 AATAGATCCTTTTCACCAAGTTTCTTA 57.192 29.630 0.00 0.00 0.00 2.10
69 70 9.981460 ATAGATCCTTTTCACCAAGTTTCTTAT 57.019 29.630 0.00 0.00 0.00 1.73
70 71 8.712228 AGATCCTTTTCACCAAGTTTCTTATT 57.288 30.769 0.00 0.00 0.00 1.40
71 72 8.797438 AGATCCTTTTCACCAAGTTTCTTATTC 58.203 33.333 0.00 0.00 0.00 1.75
72 73 8.712228 ATCCTTTTCACCAAGTTTCTTATTCT 57.288 30.769 0.00 0.00 0.00 2.40
73 74 8.533569 TCCTTTTCACCAAGTTTCTTATTCTT 57.466 30.769 0.00 0.00 0.00 2.52
74 75 8.413229 TCCTTTTCACCAAGTTTCTTATTCTTG 58.587 33.333 0.00 0.00 38.45 3.02
75 76 8.413229 CCTTTTCACCAAGTTTCTTATTCTTGA 58.587 33.333 5.83 0.00 40.35 3.02
76 77 9.801873 CTTTTCACCAAGTTTCTTATTCTTGAA 57.198 29.630 5.83 0.00 40.35 2.69
77 78 9.801873 TTTTCACCAAGTTTCTTATTCTTGAAG 57.198 29.630 5.83 0.00 40.35 3.02
78 79 6.970484 TCACCAAGTTTCTTATTCTTGAAGC 58.030 36.000 5.83 0.00 40.35 3.86
79 80 6.772716 TCACCAAGTTTCTTATTCTTGAAGCT 59.227 34.615 5.83 0.00 40.35 3.74
80 81 6.860023 CACCAAGTTTCTTATTCTTGAAGCTG 59.140 38.462 5.83 0.00 40.35 4.24
81 82 6.772716 ACCAAGTTTCTTATTCTTGAAGCTGA 59.227 34.615 5.83 0.00 40.35 4.26
82 83 7.285401 ACCAAGTTTCTTATTCTTGAAGCTGAA 59.715 33.333 5.83 0.00 40.35 3.02
83 84 7.806960 CCAAGTTTCTTATTCTTGAAGCTGAAG 59.193 37.037 5.83 0.00 40.35 3.02
84 85 6.907741 AGTTTCTTATTCTTGAAGCTGAAGC 58.092 36.000 0.00 0.00 42.49 3.86
96 97 1.580815 GCTGAAGCTAGATGACAGCC 58.419 55.000 21.80 9.95 45.19 4.85
97 98 1.134580 GCTGAAGCTAGATGACAGCCA 60.135 52.381 21.80 0.00 45.19 4.75
98 99 2.679059 GCTGAAGCTAGATGACAGCCAA 60.679 50.000 21.80 0.00 45.19 4.52
99 100 3.603532 CTGAAGCTAGATGACAGCCAAA 58.396 45.455 0.00 0.00 39.99 3.28
100 101 4.197750 CTGAAGCTAGATGACAGCCAAAT 58.802 43.478 0.00 0.00 39.99 2.32
101 102 5.357742 TGAAGCTAGATGACAGCCAAATA 57.642 39.130 0.00 0.00 39.99 1.40
102 103 5.933617 TGAAGCTAGATGACAGCCAAATAT 58.066 37.500 0.00 0.00 39.99 1.28
103 104 6.359804 TGAAGCTAGATGACAGCCAAATATT 58.640 36.000 0.00 0.00 39.99 1.28
104 105 6.830324 TGAAGCTAGATGACAGCCAAATATTT 59.170 34.615 0.00 0.00 39.99 1.40
105 106 7.340232 TGAAGCTAGATGACAGCCAAATATTTT 59.660 33.333 0.00 0.00 39.99 1.82
106 107 7.269477 AGCTAGATGACAGCCAAATATTTTC 57.731 36.000 0.00 0.00 39.99 2.29
107 108 7.059156 AGCTAGATGACAGCCAAATATTTTCT 58.941 34.615 0.00 0.00 39.99 2.52
108 109 7.559170 AGCTAGATGACAGCCAAATATTTTCTT 59.441 33.333 0.00 0.00 39.99 2.52
109 110 8.193438 GCTAGATGACAGCCAAATATTTTCTTT 58.807 33.333 0.00 0.00 32.68 2.52
110 111 9.512435 CTAGATGACAGCCAAATATTTTCTTTG 57.488 33.333 0.00 0.00 34.17 2.77
139 140 9.804758 AGTACTACAACTTATAGATGAAACTGC 57.195 33.333 0.00 0.00 0.00 4.40
140 141 9.804758 GTACTACAACTTATAGATGAAACTGCT 57.195 33.333 0.00 0.00 0.00 4.24
142 143 9.372369 ACTACAACTTATAGATGAAACTGCTTC 57.628 33.333 0.00 0.00 34.31 3.86
156 157 7.771183 TGAAACTGCTTCAAAGTGAATTTAGT 58.229 30.769 0.00 0.00 41.21 2.24
157 158 7.701924 TGAAACTGCTTCAAAGTGAATTTAGTG 59.298 33.333 0.00 0.00 41.21 2.74
158 159 6.942532 ACTGCTTCAAAGTGAATTTAGTGA 57.057 33.333 0.00 0.00 35.59 3.41
159 160 7.333528 ACTGCTTCAAAGTGAATTTAGTGAA 57.666 32.000 0.00 0.00 35.59 3.18
160 161 7.420800 ACTGCTTCAAAGTGAATTTAGTGAAG 58.579 34.615 11.18 11.18 35.59 3.02
161 162 6.208644 TGCTTCAAAGTGAATTTAGTGAAGC 58.791 36.000 23.10 23.10 45.57 3.86
162 163 5.340667 GCTTCAAAGTGAATTTAGTGAAGCG 59.659 40.000 19.01 2.55 41.07 4.68
163 164 6.612247 TTCAAAGTGAATTTAGTGAAGCGA 57.388 33.333 0.00 0.00 30.26 4.93
164 165 6.612247 TCAAAGTGAATTTAGTGAAGCGAA 57.388 33.333 0.00 0.00 0.00 4.70
165 166 7.022055 TCAAAGTGAATTTAGTGAAGCGAAA 57.978 32.000 0.00 0.00 0.00 3.46
166 167 6.910433 TCAAAGTGAATTTAGTGAAGCGAAAC 59.090 34.615 0.00 0.00 0.00 2.78
167 168 5.358298 AGTGAATTTAGTGAAGCGAAACC 57.642 39.130 0.00 0.00 0.00 3.27
168 169 4.084013 AGTGAATTTAGTGAAGCGAAACCG 60.084 41.667 0.00 0.00 0.00 4.44
169 170 4.059511 TGAATTTAGTGAAGCGAAACCGA 58.940 39.130 0.00 0.00 0.00 4.69
170 171 4.693566 TGAATTTAGTGAAGCGAAACCGAT 59.306 37.500 0.00 0.00 0.00 4.18
171 172 5.180492 TGAATTTAGTGAAGCGAAACCGATT 59.820 36.000 0.00 0.00 38.46 3.34
172 173 5.622770 ATTTAGTGAAGCGAAACCGATTT 57.377 34.783 0.00 0.00 35.67 2.17
173 174 5.427036 TTTAGTGAAGCGAAACCGATTTT 57.573 34.783 0.00 0.00 35.67 1.82
174 175 3.982576 AGTGAAGCGAAACCGATTTTT 57.017 38.095 0.00 0.00 35.67 1.94
175 176 3.628017 AGTGAAGCGAAACCGATTTTTG 58.372 40.909 0.00 0.00 35.67 2.44
176 177 3.066203 AGTGAAGCGAAACCGATTTTTGT 59.934 39.130 0.00 0.00 35.67 2.83
177 178 3.179599 GTGAAGCGAAACCGATTTTTGTG 59.820 43.478 0.00 0.00 35.67 3.33
178 179 3.065510 TGAAGCGAAACCGATTTTTGTGA 59.934 39.130 0.00 0.00 35.67 3.58
179 180 3.701532 AGCGAAACCGATTTTTGTGAA 57.298 38.095 0.00 0.00 31.74 3.18
180 181 3.628017 AGCGAAACCGATTTTTGTGAAG 58.372 40.909 0.00 0.00 31.74 3.02
181 182 2.153057 GCGAAACCGATTTTTGTGAAGC 59.847 45.455 0.00 0.00 31.74 3.86
182 183 2.400408 CGAAACCGATTTTTGTGAAGCG 59.600 45.455 0.00 0.00 38.09 4.68
199 200 3.386543 CGGAGCAGTCCCAAATAGG 57.613 57.895 0.00 0.00 40.20 2.57
200 201 0.815615 CGGAGCAGTCCCAAATAGGC 60.816 60.000 0.00 0.00 40.20 3.93
201 202 0.466372 GGAGCAGTCCCAAATAGGCC 60.466 60.000 0.00 0.00 36.76 5.19
217 218 1.843851 AGGCCCTAAATCGGTCATTGA 59.156 47.619 0.00 0.00 0.00 2.57
220 221 3.751698 GGCCCTAAATCGGTCATTGATAC 59.248 47.826 0.00 0.00 0.00 2.24
221 222 4.505039 GGCCCTAAATCGGTCATTGATACT 60.505 45.833 0.00 0.00 0.00 2.12
229 230 8.786826 AAATCGGTCATTGATACTGTAAAAGA 57.213 30.769 0.00 0.00 0.00 2.52
230 231 8.786826 AATCGGTCATTGATACTGTAAAAGAA 57.213 30.769 0.00 0.00 0.00 2.52
231 232 8.964476 ATCGGTCATTGATACTGTAAAAGAAT 57.036 30.769 0.00 0.00 0.00 2.40
232 233 8.786826 TCGGTCATTGATACTGTAAAAGAATT 57.213 30.769 0.00 0.00 0.00 2.17
233 234 9.226606 TCGGTCATTGATACTGTAAAAGAATTT 57.773 29.630 0.00 0.00 42.41 1.82
323 324 3.938963 TGGAGCGACAACTAATTTGGATC 59.061 43.478 0.00 0.00 39.84 3.36
343 344 8.760980 TGGATCGGAGGAAATATTAATTTTGT 57.239 30.769 0.00 0.00 35.41 2.83
344 345 9.854668 TGGATCGGAGGAAATATTAATTTTGTA 57.145 29.630 0.00 0.00 35.41 2.41
385 386 2.634453 CCTTTTGGAGGCATGGAGTTTT 59.366 45.455 0.00 0.00 44.07 2.43
412 413 1.002087 GAGGTGTGAACTCGGGTGAAT 59.998 52.381 0.00 0.00 0.00 2.57
414 415 2.635915 AGGTGTGAACTCGGGTGAATTA 59.364 45.455 0.00 0.00 0.00 1.40
485 487 7.797121 ATAAACATTGGAGGGTCTTTCATTT 57.203 32.000 0.00 0.00 0.00 2.32
486 488 5.473066 AACATTGGAGGGTCTTTCATTTG 57.527 39.130 0.00 0.00 0.00 2.32
487 489 3.259123 ACATTGGAGGGTCTTTCATTTGC 59.741 43.478 0.00 0.00 0.00 3.68
488 490 1.533625 TGGAGGGTCTTTCATTTGCG 58.466 50.000 0.00 0.00 0.00 4.85
490 492 1.886542 GGAGGGTCTTTCATTTGCGTT 59.113 47.619 0.00 0.00 0.00 4.84
491 493 2.095212 GGAGGGTCTTTCATTTGCGTTC 60.095 50.000 0.00 0.00 0.00 3.95
517 519 1.190643 TCGTGATGGCTCATGTGGTA 58.809 50.000 0.00 0.00 39.12 3.25
521 523 3.494626 CGTGATGGCTCATGTGGTATAAC 59.505 47.826 0.00 0.00 34.30 1.89
614 617 6.015265 ACACATCCACAAATGTCATTTCATCA 60.015 34.615 7.87 0.00 37.78 3.07
651 654 6.508404 GCACAGTTAGAAAACAAAGCAATGTG 60.508 38.462 0.00 0.00 38.12 3.21
658 661 5.348451 AGAAAACAAAGCAATGTGTGTTGTC 59.652 36.000 7.47 7.47 38.13 3.18
756 785 4.186856 TGCGATGTTAATCTCTCACACA 57.813 40.909 0.00 0.00 0.00 3.72
772 831 0.109342 CACAGGCACCTCCACTTTCT 59.891 55.000 0.00 0.00 37.29 2.52
777 836 2.644798 AGGCACCTCCACTTTCTAACAT 59.355 45.455 0.00 0.00 37.29 2.71
882 942 2.615240 CCAATCCCACACTTCGATCACA 60.615 50.000 0.00 0.00 0.00 3.58
883 943 2.386661 ATCCCACACTTCGATCACAC 57.613 50.000 0.00 0.00 0.00 3.82
910 970 0.345502 ACCCTAGCTACCAATCCCCA 59.654 55.000 0.00 0.00 0.00 4.96
950 1010 1.207329 GGTTCTTCCGTAGCTGGATGT 59.793 52.381 0.00 0.00 38.00 3.06
1086 1146 3.338126 CTACCTCGGTTCGTGCGCT 62.338 63.158 9.73 0.00 0.00 5.92
1103 1163 4.323477 TGTTCCCCCGCCTGAACG 62.323 66.667 0.00 0.00 42.93 3.95
1242 1302 1.641577 GAGGTCGCGATTAAGCTTGT 58.358 50.000 14.06 0.00 34.40 3.16
1243 1303 1.324736 GAGGTCGCGATTAAGCTTGTG 59.675 52.381 14.06 0.00 34.40 3.33
1244 1304 1.067142 AGGTCGCGATTAAGCTTGTGA 60.067 47.619 14.06 1.00 34.40 3.58
1245 1305 1.324736 GGTCGCGATTAAGCTTGTGAG 59.675 52.381 14.06 0.00 34.40 3.51
1246 1306 1.993370 GTCGCGATTAAGCTTGTGAGT 59.007 47.619 14.06 0.00 34.40 3.41
1247 1307 2.412089 GTCGCGATTAAGCTTGTGAGTT 59.588 45.455 14.06 0.00 34.40 3.01
1248 1308 2.411748 TCGCGATTAAGCTTGTGAGTTG 59.588 45.455 9.86 0.00 34.40 3.16
1249 1309 2.411748 CGCGATTAAGCTTGTGAGTTGA 59.588 45.455 9.86 0.00 34.40 3.18
1250 1310 3.722082 CGCGATTAAGCTTGTGAGTTGAC 60.722 47.826 9.86 0.00 34.40 3.18
1251 1311 3.722082 GCGATTAAGCTTGTGAGTTGACG 60.722 47.826 9.86 3.45 0.00 4.35
1252 1312 3.722082 CGATTAAGCTTGTGAGTTGACGC 60.722 47.826 9.86 0.00 0.00 5.19
1253 1313 1.136690 TAAGCTTGTGAGTTGACGCG 58.863 50.000 9.86 3.53 0.00 6.01
1254 1314 0.529773 AAGCTTGTGAGTTGACGCGA 60.530 50.000 15.93 0.00 0.00 5.87
1255 1315 1.201825 GCTTGTGAGTTGACGCGAC 59.798 57.895 15.93 7.62 0.00 5.19
1256 1316 1.487452 GCTTGTGAGTTGACGCGACA 61.487 55.000 15.93 11.23 0.00 4.35
1257 1317 0.927537 CTTGTGAGTTGACGCGACAA 59.072 50.000 19.59 19.59 0.00 3.18
1258 1318 1.526887 CTTGTGAGTTGACGCGACAAT 59.473 47.619 25.33 14.85 32.36 2.71
1259 1319 1.577468 TGTGAGTTGACGCGACAATT 58.423 45.000 25.33 21.58 32.36 2.32
1260 1320 1.525197 TGTGAGTTGACGCGACAATTC 59.475 47.619 29.36 29.36 37.14 2.17
1261 1321 1.792949 GTGAGTTGACGCGACAATTCT 59.207 47.619 32.89 23.98 37.39 2.40
1262 1322 2.058798 TGAGTTGACGCGACAATTCTC 58.941 47.619 32.89 28.58 37.39 2.87
1263 1323 2.288213 TGAGTTGACGCGACAATTCTCT 60.288 45.455 32.89 23.13 37.39 3.10
1264 1324 2.731976 GAGTTGACGCGACAATTCTCTT 59.268 45.455 28.99 12.76 34.96 2.85
1265 1325 2.476619 AGTTGACGCGACAATTCTCTTG 59.523 45.455 25.33 0.00 32.36 3.02
1266 1326 1.428448 TGACGCGACAATTCTCTTGG 58.572 50.000 15.93 0.00 0.00 3.61
1267 1327 1.000394 TGACGCGACAATTCTCTTGGA 60.000 47.619 15.93 0.00 0.00 3.53
1268 1328 2.271800 GACGCGACAATTCTCTTGGAT 58.728 47.619 15.93 0.00 0.00 3.41
1269 1329 2.673368 GACGCGACAATTCTCTTGGATT 59.327 45.455 15.93 0.00 0.00 3.01
1270 1330 3.074412 ACGCGACAATTCTCTTGGATTT 58.926 40.909 15.93 0.00 0.00 2.17
1271 1331 3.125316 ACGCGACAATTCTCTTGGATTTC 59.875 43.478 15.93 0.00 0.00 2.17
1272 1332 3.125146 CGCGACAATTCTCTTGGATTTCA 59.875 43.478 0.00 0.00 0.00 2.69
1273 1333 4.656041 GCGACAATTCTCTTGGATTTCAG 58.344 43.478 0.00 0.00 0.00 3.02
1274 1334 4.656041 CGACAATTCTCTTGGATTTCAGC 58.344 43.478 0.00 0.00 0.00 4.26
1275 1335 4.154737 CGACAATTCTCTTGGATTTCAGCA 59.845 41.667 0.00 0.00 0.00 4.41
1276 1336 5.163683 CGACAATTCTCTTGGATTTCAGCAT 60.164 40.000 0.00 0.00 0.00 3.79
1277 1337 6.037500 CGACAATTCTCTTGGATTTCAGCATA 59.962 38.462 0.00 0.00 0.00 3.14
1278 1338 7.330900 ACAATTCTCTTGGATTTCAGCATAG 57.669 36.000 0.00 0.00 0.00 2.23
1279 1339 6.888632 ACAATTCTCTTGGATTTCAGCATAGT 59.111 34.615 0.00 0.00 0.00 2.12
1280 1340 7.395489 ACAATTCTCTTGGATTTCAGCATAGTT 59.605 33.333 0.00 0.00 0.00 2.24
1281 1341 6.748333 TTCTCTTGGATTTCAGCATAGTTG 57.252 37.500 0.00 0.00 0.00 3.16
1282 1342 5.809001 TCTCTTGGATTTCAGCATAGTTGT 58.191 37.500 0.00 0.00 0.00 3.32
1283 1343 5.645067 TCTCTTGGATTTCAGCATAGTTGTG 59.355 40.000 0.00 0.00 0.00 3.33
1284 1344 5.316167 TCTTGGATTTCAGCATAGTTGTGT 58.684 37.500 0.00 0.00 0.00 3.72
1285 1345 5.769662 TCTTGGATTTCAGCATAGTTGTGTT 59.230 36.000 0.00 0.00 0.00 3.32
1286 1346 6.265196 TCTTGGATTTCAGCATAGTTGTGTTT 59.735 34.615 0.00 0.00 0.00 2.83
1287 1347 7.446931 TCTTGGATTTCAGCATAGTTGTGTTTA 59.553 33.333 0.00 0.00 0.00 2.01
1291 1351 8.408601 GGATTTCAGCATAGTTGTGTTTATGAT 58.591 33.333 0.00 0.00 30.54 2.45
1773 1981 1.194218 GGTAAATGCAGCCCAACCAT 58.806 50.000 0.00 0.00 0.00 3.55
1926 2134 5.724328 TGATGTCACACTCAGTCTATTTCC 58.276 41.667 0.00 0.00 0.00 3.13
1937 2145 7.281100 CACTCAGTCTATTTCCCCAAAACTATC 59.719 40.741 0.00 0.00 0.00 2.08
2085 2293 5.654603 AATACCCGTTCATTTTCTTTCCC 57.345 39.130 0.00 0.00 0.00 3.97
2497 2705 3.795688 TGGAAAGAGAGCAAATCAGGT 57.204 42.857 0.00 0.00 0.00 4.00
2577 2785 6.712241 ATGTATATGCGCTTACATCTTGTC 57.288 37.500 18.92 0.00 34.73 3.18
2770 2992 7.822822 GGAACCATAACAGTACTGTGTTTCTAT 59.177 37.037 28.55 18.21 44.13 1.98
2939 3161 1.676014 GCGAGTGTAAGCACCCATCTT 60.676 52.381 0.00 0.00 46.35 2.40
3019 3242 9.325198 CATATCTTTAAGTGCACCATGTTACTA 57.675 33.333 14.63 0.00 0.00 1.82
3044 3267 7.396540 TTTCTTCATTAAATCTCTCTTGCCC 57.603 36.000 0.00 0.00 0.00 5.36
3077 3300 7.063426 GCACCATCTTGTTTAAAGAATAAAGGC 59.937 37.037 0.00 0.00 0.00 4.35
3080 3303 8.306761 CCATCTTGTTTAAAGAATAAAGGCTGT 58.693 33.333 0.00 0.00 0.00 4.40
3824 4051 0.761702 GGGGATGGCTCCAATTGCAT 60.762 55.000 0.00 0.00 44.08 3.96
3895 4123 9.747898 TCCCTACAAGTAACATTATCACATTTT 57.252 29.630 0.00 0.00 0.00 1.82
3973 4201 0.944386 ACACCAATGAACGAGTGCAC 59.056 50.000 9.40 9.40 33.46 4.57
3982 4210 7.497579 ACCAATGAACGAGTGCACATAATAATA 59.502 33.333 21.04 0.00 0.00 0.98
3983 4211 8.506437 CCAATGAACGAGTGCACATAATAATAT 58.494 33.333 21.04 0.78 0.00 1.28
4090 4318 4.153117 GGTGCATGTTCAGAACTACTCTTG 59.847 45.833 14.51 4.31 29.07 3.02
4198 4426 2.563179 CGAAGAGGGAAGAAGAAGTGGA 59.437 50.000 0.00 0.00 0.00 4.02
4576 4804 0.605589 CGTCCCAGAGAAACTCAGCT 59.394 55.000 0.00 0.00 32.06 4.24
4599 4827 2.574399 GAGGACCTCACAGACGCC 59.426 66.667 17.10 0.00 0.00 5.68
4612 4840 2.020720 CAGACGCCTGACTACTCTGAT 58.979 52.381 0.00 0.00 43.02 2.90
4679 4907 1.264288 GCATCCGAGGCCTAAATTTCG 59.736 52.381 4.42 3.52 0.00 3.46
4683 4911 1.873591 CCGAGGCCTAAATTTCGATGG 59.126 52.381 4.42 0.00 35.19 3.51
4687 4915 3.299503 AGGCCTAAATTTCGATGGCAAT 58.700 40.909 1.29 9.49 44.85 3.56
4708 4936 7.343316 GGCAATGATAGGATCCACTACTAGTAT 59.657 40.741 15.82 0.00 0.00 2.12
4709 4937 8.410141 GCAATGATAGGATCCACTACTAGTATC 58.590 40.741 15.82 10.09 0.00 2.24
4710 4938 9.693739 CAATGATAGGATCCACTACTAGTATCT 57.306 37.037 15.82 0.00 0.00 1.98
4731 4959 3.526931 TCTTCTGGATCCTACAAAGCG 57.473 47.619 14.23 0.00 0.00 4.68
4738 4966 5.009710 TCTGGATCCTACAAAGCGTGTATAG 59.990 44.000 14.23 0.00 41.93 1.31
4769 4997 2.825532 TGCTGAAGTTAAATTGGGGAGC 59.174 45.455 0.00 0.00 0.00 4.70
4776 5004 2.602746 TAAATTGGGGAGCGAGGCCG 62.603 60.000 0.00 0.00 39.16 6.13
4784 5012 3.941657 GAGCGAGGCCGTGCTTTCT 62.942 63.158 23.09 4.04 42.60 2.52
4836 5072 2.343758 GTGCTGAAGCGGTGAGGA 59.656 61.111 0.00 0.00 45.83 3.71
4839 5075 2.394563 GCTGAAGCGGTGAGGAAGC 61.395 63.158 0.00 0.00 0.00 3.86
4840 5076 1.743252 CTGAAGCGGTGAGGAAGCC 60.743 63.158 0.00 0.00 0.00 4.35
4847 5083 1.606531 GGTGAGGAAGCCTGCTGAT 59.393 57.895 0.00 0.00 31.76 2.90
4857 5093 3.097342 AGCCTGCTGATCCAAAGAAAT 57.903 42.857 0.00 0.00 0.00 2.17
4885 5121 0.377203 GCTGGCGAAATAAAGGGTCG 59.623 55.000 0.00 0.00 37.82 4.79
4888 5124 1.725665 GCGAAATAAAGGGTCGGCC 59.274 57.895 0.00 0.00 35.35 6.13
4889 5125 2.011453 CGAAATAAAGGGTCGGCCG 58.989 57.895 22.12 22.12 34.97 6.13
4890 5126 1.433837 CGAAATAAAGGGTCGGCCGG 61.434 60.000 27.83 6.80 34.97 6.13
4891 5127 1.077285 AAATAAAGGGTCGGCCGGG 60.077 57.895 27.83 0.00 34.97 5.73
4892 5128 2.561467 AAATAAAGGGTCGGCCGGGG 62.561 60.000 27.83 0.00 34.97 5.73
4915 5151 1.029947 CGAAAGCCACGGCCCTAAAT 61.030 55.000 3.95 0.00 43.17 1.40
4916 5152 0.455815 GAAAGCCACGGCCCTAAATG 59.544 55.000 3.95 0.00 43.17 2.32
4917 5153 1.604147 AAAGCCACGGCCCTAAATGC 61.604 55.000 3.95 0.00 43.17 3.56
4939 5176 3.078837 CACGTTGGGCCTATGTTTTAGT 58.921 45.455 10.23 0.00 0.00 2.24
4990 5227 3.679980 TGAGATGCTGCTTTCGTACTTTC 59.320 43.478 0.00 0.00 0.00 2.62
4999 5239 6.036735 GCTGCTTTCGTACTTTCCACATAATA 59.963 38.462 0.00 0.00 0.00 0.98
5000 5240 7.534085 TGCTTTCGTACTTTCCACATAATAG 57.466 36.000 0.00 0.00 0.00 1.73
5001 5241 6.537301 TGCTTTCGTACTTTCCACATAATAGG 59.463 38.462 0.00 0.00 0.00 2.57
5002 5242 6.537660 GCTTTCGTACTTTCCACATAATAGGT 59.462 38.462 0.00 0.00 0.00 3.08
5003 5243 7.707893 GCTTTCGTACTTTCCACATAATAGGTA 59.292 37.037 0.00 0.00 0.00 3.08
5004 5244 8.931385 TTTCGTACTTTCCACATAATAGGTAC 57.069 34.615 0.00 0.00 0.00 3.34
5005 5245 6.728200 TCGTACTTTCCACATAATAGGTACG 58.272 40.000 13.64 13.64 46.65 3.67
5006 5246 5.916883 CGTACTTTCCACATAATAGGTACGG 59.083 44.000 12.46 0.00 43.78 4.02
5007 5247 6.238731 CGTACTTTCCACATAATAGGTACGGA 60.239 42.308 12.46 0.00 43.78 4.69
5008 5248 6.158023 ACTTTCCACATAATAGGTACGGAG 57.842 41.667 0.00 0.00 0.00 4.63
5039 5279 8.177119 TGTTTTGAGATATTTAGCCAACTGTT 57.823 30.769 0.00 0.00 0.00 3.16
5046 5286 8.894768 AGATATTTAGCCAACTGTTATGTCTC 57.105 34.615 0.00 0.00 0.00 3.36
5058 5298 8.705134 CAACTGTTATGTCTCGTATGTTTACAA 58.295 33.333 0.00 0.00 0.00 2.41
5059 5299 8.236084 ACTGTTATGTCTCGTATGTTTACAAC 57.764 34.615 0.00 0.00 0.00 3.32
5066 5306 5.346822 GTCTCGTATGTTTACAACGGAATGT 59.653 40.000 13.49 0.00 37.24 2.71
5079 5319 1.666888 CGGAATGTCTTGTTGGCTTGC 60.667 52.381 0.00 0.00 0.00 4.01
5082 5322 1.174712 ATGTCTTGTTGGCTTGCGCT 61.175 50.000 9.73 0.00 36.09 5.92
5083 5323 1.081840 GTCTTGTTGGCTTGCGCTC 60.082 57.895 9.73 0.00 36.09 5.03
5084 5324 2.256461 CTTGTTGGCTTGCGCTCC 59.744 61.111 9.73 8.01 36.09 4.70
5085 5325 2.203337 TTGTTGGCTTGCGCTCCT 60.203 55.556 9.73 0.00 36.09 3.69
5086 5326 0.955428 CTTGTTGGCTTGCGCTCCTA 60.955 55.000 9.73 1.21 36.09 2.94
5087 5327 0.536233 TTGTTGGCTTGCGCTCCTAA 60.536 50.000 9.73 0.00 36.09 2.69
5088 5328 0.536233 TGTTGGCTTGCGCTCCTAAA 60.536 50.000 9.73 0.00 36.09 1.85
5089 5329 0.811281 GTTGGCTTGCGCTCCTAAAT 59.189 50.000 9.73 0.00 36.09 1.40
5090 5330 1.094785 TTGGCTTGCGCTCCTAAATC 58.905 50.000 9.73 0.00 36.09 2.17
5091 5331 0.748005 TGGCTTGCGCTCCTAAATCC 60.748 55.000 9.73 0.00 36.09 3.01
5092 5332 1.448119 GGCTTGCGCTCCTAAATCCC 61.448 60.000 9.73 0.00 36.09 3.85
5093 5333 0.464554 GCTTGCGCTCCTAAATCCCT 60.465 55.000 9.73 0.00 0.00 4.20
5094 5334 1.587547 CTTGCGCTCCTAAATCCCTC 58.412 55.000 9.73 0.00 0.00 4.30
5095 5335 0.908910 TTGCGCTCCTAAATCCCTCA 59.091 50.000 9.73 0.00 0.00 3.86
5096 5336 0.908910 TGCGCTCCTAAATCCCTCAA 59.091 50.000 9.73 0.00 0.00 3.02
5097 5337 1.280710 TGCGCTCCTAAATCCCTCAAA 59.719 47.619 9.73 0.00 0.00 2.69
5098 5338 2.290641 TGCGCTCCTAAATCCCTCAAAA 60.291 45.455 9.73 0.00 0.00 2.44
5099 5339 2.752903 GCGCTCCTAAATCCCTCAAAAA 59.247 45.455 0.00 0.00 0.00 1.94
5219 5459 8.827177 TTGTGTCCAACTGTCTATACTAAAAG 57.173 34.615 0.00 0.00 0.00 2.27
5241 5482 1.416030 GGAAATTGTTTGGCCACACCT 59.584 47.619 19.21 4.03 40.22 4.00
5302 5543 3.319405 TGTCCCACGTGCATTTATTTTGT 59.681 39.130 10.91 0.00 0.00 2.83
5345 5586 6.704310 AGCCATAACTTTTCATTCAAGCATT 58.296 32.000 0.00 0.00 0.00 3.56
5366 5607 9.280174 AGCATTGAAATTCAATTCTGTTTTCAT 57.720 25.926 17.52 0.00 44.03 2.57
5367 5608 9.325150 GCATTGAAATTCAATTCTGTTTTCATG 57.675 29.630 17.65 5.94 44.03 3.07
5382 5623 3.855255 TTCATGGTCAGGTTTCTCACA 57.145 42.857 0.00 0.00 0.00 3.58
5521 5766 6.907961 TGGCCTAGTAGAACTGACTATTAGA 58.092 40.000 3.32 0.00 35.87 2.10
5532 5777 4.332819 ACTGACTATTAGATTGGTTTGCGC 59.667 41.667 0.00 0.00 0.00 6.09
5533 5778 4.257731 TGACTATTAGATTGGTTTGCGCA 58.742 39.130 5.66 5.66 0.00 6.09
5600 5845 7.377398 TGCTACATACAAAGCAAATTCATTGT 58.623 30.769 0.00 0.00 45.36 2.71
5603 5848 9.289303 CTACATACAAAGCAAATTCATTGTACC 57.711 33.333 0.00 0.00 40.05 3.34
5666 5911 1.466856 TCATGACTGCTCAATTGCCC 58.533 50.000 0.00 0.00 0.00 5.36
5690 5935 4.908601 TGTTGATGGTCAGTTCCTACAT 57.091 40.909 0.00 0.00 0.00 2.29
5720 5967 8.322906 TGTTCAATTGCCTATACATGCTATAC 57.677 34.615 0.00 0.00 0.00 1.47
5756 6003 5.928976 TGATGTATAGTTGCCTGCTATTGT 58.071 37.500 0.00 0.00 32.15 2.71
5799 6046 8.854031 ATTGTTGCACAATTGCCTAACTTTTCC 61.854 37.037 5.05 0.00 45.80 3.13
5932 6180 4.085357 AGTAGACACAAAAGCATCACCA 57.915 40.909 0.00 0.00 0.00 4.17
5933 6181 4.460263 AGTAGACACAAAAGCATCACCAA 58.540 39.130 0.00 0.00 0.00 3.67
6037 6285 6.817140 GCGAGGAAGTTAGGAGAAAATTAGAA 59.183 38.462 0.00 0.00 0.00 2.10
6072 6320 7.246171 AGGACATAGAATGTAGTGAAGTTGT 57.754 36.000 0.00 0.00 45.03 3.32
6103 6352 3.072476 AGCACTAAAGTTGCCTCTGGTAA 59.928 43.478 0.00 0.00 0.00 2.85
6211 6460 8.458573 TTTTTAATGGAGTGAAGTTGCTTCTA 57.541 30.769 9.82 0.00 40.73 2.10
6304 6554 5.689961 TGGAGTTTAATTTTGAAAAGCTCGC 59.310 36.000 0.00 0.00 0.00 5.03
6315 6565 2.573609 AAAGCTCGCCGCGACCTAAT 62.574 55.000 12.39 1.00 45.59 1.73
6324 6574 0.935196 CGCGACCTAATTAGCCAACC 59.065 55.000 0.00 0.00 0.00 3.77
6429 6680 2.236146 TGTAGGCAATTGTCTGATCCGT 59.764 45.455 22.74 0.00 0.00 4.69
6445 6696 2.993937 TCCGTCCCGCTATGAAATTTT 58.006 42.857 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.399305 AGGGGAGAAATGAATGGGTATCC 59.601 47.826 0.00 0.00 0.00 2.59
10 11 4.104738 TGAGGGGAGAAATGAATGGGTATC 59.895 45.833 0.00 0.00 0.00 2.24
11 12 4.054369 TGAGGGGAGAAATGAATGGGTAT 58.946 43.478 0.00 0.00 0.00 2.73
12 13 3.469859 TGAGGGGAGAAATGAATGGGTA 58.530 45.455 0.00 0.00 0.00 3.69
13 14 2.287584 TGAGGGGAGAAATGAATGGGT 58.712 47.619 0.00 0.00 0.00 4.51
14 15 3.026694 GTTGAGGGGAGAAATGAATGGG 58.973 50.000 0.00 0.00 0.00 4.00
15 16 3.026694 GGTTGAGGGGAGAAATGAATGG 58.973 50.000 0.00 0.00 0.00 3.16
16 17 3.700538 TGGTTGAGGGGAGAAATGAATG 58.299 45.455 0.00 0.00 0.00 2.67
17 18 4.402616 TTGGTTGAGGGGAGAAATGAAT 57.597 40.909 0.00 0.00 0.00 2.57
18 19 3.893753 TTGGTTGAGGGGAGAAATGAA 57.106 42.857 0.00 0.00 0.00 2.57
19 20 3.333381 TGATTGGTTGAGGGGAGAAATGA 59.667 43.478 0.00 0.00 0.00 2.57
20 21 3.700538 TGATTGGTTGAGGGGAGAAATG 58.299 45.455 0.00 0.00 0.00 2.32
21 22 4.402616 TTGATTGGTTGAGGGGAGAAAT 57.597 40.909 0.00 0.00 0.00 2.17
22 23 3.893753 TTGATTGGTTGAGGGGAGAAA 57.106 42.857 0.00 0.00 0.00 2.52
23 24 3.893753 TTTGATTGGTTGAGGGGAGAA 57.106 42.857 0.00 0.00 0.00 2.87
24 25 4.788075 TCTATTTGATTGGTTGAGGGGAGA 59.212 41.667 0.00 0.00 0.00 3.71
25 26 5.116084 TCTATTTGATTGGTTGAGGGGAG 57.884 43.478 0.00 0.00 0.00 4.30
26 27 5.399038 GGATCTATTTGATTGGTTGAGGGGA 60.399 44.000 0.00 0.00 35.14 4.81
27 28 4.829492 GGATCTATTTGATTGGTTGAGGGG 59.171 45.833 0.00 0.00 35.14 4.79
28 29 5.699143 AGGATCTATTTGATTGGTTGAGGG 58.301 41.667 0.00 0.00 35.14 4.30
29 30 7.651027 AAAGGATCTATTTGATTGGTTGAGG 57.349 36.000 0.00 0.00 35.14 3.86
30 31 8.742777 TGAAAAGGATCTATTTGATTGGTTGAG 58.257 33.333 0.00 0.00 35.14 3.02
31 32 8.522830 GTGAAAAGGATCTATTTGATTGGTTGA 58.477 33.333 0.00 0.00 35.14 3.18
32 33 7.761249 GGTGAAAAGGATCTATTTGATTGGTTG 59.239 37.037 0.00 0.00 35.14 3.77
33 34 7.454380 TGGTGAAAAGGATCTATTTGATTGGTT 59.546 33.333 0.00 0.00 35.14 3.67
34 35 6.953520 TGGTGAAAAGGATCTATTTGATTGGT 59.046 34.615 0.00 0.00 35.14 3.67
35 36 7.408756 TGGTGAAAAGGATCTATTTGATTGG 57.591 36.000 0.00 0.00 35.14 3.16
36 37 8.526147 ACTTGGTGAAAAGGATCTATTTGATTG 58.474 33.333 0.00 0.00 35.14 2.67
37 38 8.655935 ACTTGGTGAAAAGGATCTATTTGATT 57.344 30.769 0.00 0.00 35.14 2.57
38 39 8.655935 AACTTGGTGAAAAGGATCTATTTGAT 57.344 30.769 0.00 0.00 38.27 2.57
39 40 8.477419 AAACTTGGTGAAAAGGATCTATTTGA 57.523 30.769 0.00 0.00 0.00 2.69
40 41 8.579863 AGAAACTTGGTGAAAAGGATCTATTTG 58.420 33.333 0.00 0.00 29.59 2.32
41 42 8.712228 AGAAACTTGGTGAAAAGGATCTATTT 57.288 30.769 0.00 0.00 29.59 1.40
42 43 8.712228 AAGAAACTTGGTGAAAAGGATCTATT 57.288 30.769 0.00 0.00 30.56 1.73
43 44 9.981460 ATAAGAAACTTGGTGAAAAGGATCTAT 57.019 29.630 0.00 0.00 30.56 1.98
44 45 9.807921 AATAAGAAACTTGGTGAAAAGGATCTA 57.192 29.630 0.00 0.00 30.56 1.98
45 46 8.712228 AATAAGAAACTTGGTGAAAAGGATCT 57.288 30.769 0.00 0.00 31.44 2.75
46 47 8.797438 AGAATAAGAAACTTGGTGAAAAGGATC 58.203 33.333 0.00 0.00 0.00 3.36
47 48 8.712228 AGAATAAGAAACTTGGTGAAAAGGAT 57.288 30.769 0.00 0.00 0.00 3.24
48 49 8.413229 CAAGAATAAGAAACTTGGTGAAAAGGA 58.587 33.333 0.00 0.00 37.80 3.36
49 50 8.413229 TCAAGAATAAGAAACTTGGTGAAAAGG 58.587 33.333 0.00 0.00 40.60 3.11
50 51 9.801873 TTCAAGAATAAGAAACTTGGTGAAAAG 57.198 29.630 0.00 0.00 40.60 2.27
51 52 9.801873 CTTCAAGAATAAGAAACTTGGTGAAAA 57.198 29.630 0.00 0.00 40.60 2.29
52 53 7.920682 GCTTCAAGAATAAGAAACTTGGTGAAA 59.079 33.333 0.00 0.00 40.60 2.69
53 54 7.285401 AGCTTCAAGAATAAGAAACTTGGTGAA 59.715 33.333 0.00 0.00 40.60 3.18
54 55 6.772716 AGCTTCAAGAATAAGAAACTTGGTGA 59.227 34.615 0.00 0.00 40.60 4.02
55 56 6.860023 CAGCTTCAAGAATAAGAAACTTGGTG 59.140 38.462 0.00 0.00 40.60 4.17
56 57 6.772716 TCAGCTTCAAGAATAAGAAACTTGGT 59.227 34.615 0.00 0.00 40.60 3.67
57 58 7.206981 TCAGCTTCAAGAATAAGAAACTTGG 57.793 36.000 0.00 0.00 40.60 3.61
58 59 7.325579 GCTTCAGCTTCAAGAATAAGAAACTTG 59.674 37.037 6.39 0.00 39.00 3.16
59 60 7.366513 GCTTCAGCTTCAAGAATAAGAAACTT 58.633 34.615 6.39 0.00 38.21 2.66
60 61 6.907741 GCTTCAGCTTCAAGAATAAGAAACT 58.092 36.000 6.39 0.00 38.21 2.66
77 78 1.134580 TGGCTGTCATCTAGCTTCAGC 60.135 52.381 15.43 15.43 47.00 4.26
78 79 2.975732 TGGCTGTCATCTAGCTTCAG 57.024 50.000 0.00 0.00 40.92 3.02
79 80 3.701205 TTTGGCTGTCATCTAGCTTCA 57.299 42.857 0.00 0.00 40.92 3.02
80 81 6.874288 AATATTTGGCTGTCATCTAGCTTC 57.126 37.500 0.00 0.00 40.92 3.86
81 82 7.559170 AGAAAATATTTGGCTGTCATCTAGCTT 59.441 33.333 0.39 0.00 40.92 3.74
82 83 7.059156 AGAAAATATTTGGCTGTCATCTAGCT 58.941 34.615 0.39 0.00 40.92 3.32
83 84 7.269477 AGAAAATATTTGGCTGTCATCTAGC 57.731 36.000 0.39 0.00 40.41 3.42
84 85 9.512435 CAAAGAAAATATTTGGCTGTCATCTAG 57.488 33.333 0.39 0.00 34.66 2.43
113 114 9.804758 GCAGTTTCATCTATAAGTTGTAGTACT 57.195 33.333 0.00 0.00 0.00 2.73
114 115 9.804758 AGCAGTTTCATCTATAAGTTGTAGTAC 57.195 33.333 6.55 0.00 0.00 2.73
116 117 9.372369 GAAGCAGTTTCATCTATAAGTTGTAGT 57.628 33.333 6.55 0.00 35.78 2.73
117 118 9.371136 TGAAGCAGTTTCATCTATAAGTTGTAG 57.629 33.333 0.00 0.36 40.82 2.74
118 119 9.719355 TTGAAGCAGTTTCATCTATAAGTTGTA 57.281 29.630 0.00 0.00 44.90 2.41
119 120 8.621532 TTGAAGCAGTTTCATCTATAAGTTGT 57.378 30.769 0.00 0.00 44.90 3.32
120 121 9.552114 CTTTGAAGCAGTTTCATCTATAAGTTG 57.448 33.333 0.00 0.00 44.90 3.16
121 122 9.289782 ACTTTGAAGCAGTTTCATCTATAAGTT 57.710 29.630 0.00 0.00 44.90 2.66
122 123 8.725148 CACTTTGAAGCAGTTTCATCTATAAGT 58.275 33.333 0.00 4.65 44.90 2.24
123 124 8.939929 TCACTTTGAAGCAGTTTCATCTATAAG 58.060 33.333 0.00 4.07 44.90 1.73
124 125 8.846943 TCACTTTGAAGCAGTTTCATCTATAA 57.153 30.769 0.00 0.00 44.90 0.98
125 126 8.846943 TTCACTTTGAAGCAGTTTCATCTATA 57.153 30.769 0.00 0.00 44.90 1.31
126 127 7.750229 TTCACTTTGAAGCAGTTTCATCTAT 57.250 32.000 0.00 0.00 44.90 1.98
127 128 7.750229 ATTCACTTTGAAGCAGTTTCATCTA 57.250 32.000 0.00 0.00 44.90 1.98
128 129 6.645790 ATTCACTTTGAAGCAGTTTCATCT 57.354 33.333 0.00 0.00 44.90 2.90
129 130 7.704789 AAATTCACTTTGAAGCAGTTTCATC 57.295 32.000 0.00 0.00 44.90 2.92
130 131 8.416329 ACTAAATTCACTTTGAAGCAGTTTCAT 58.584 29.630 0.00 0.00 44.90 2.57
131 132 7.701924 CACTAAATTCACTTTGAAGCAGTTTCA 59.298 33.333 0.00 0.00 43.92 2.69
132 133 7.915397 TCACTAAATTCACTTTGAAGCAGTTTC 59.085 33.333 0.00 0.00 40.05 2.78
133 134 7.771183 TCACTAAATTCACTTTGAAGCAGTTT 58.229 30.769 0.00 0.00 40.05 2.66
134 135 7.333528 TCACTAAATTCACTTTGAAGCAGTT 57.666 32.000 0.00 0.00 40.05 3.16
135 136 6.942532 TCACTAAATTCACTTTGAAGCAGT 57.057 33.333 0.00 0.00 40.05 4.40
136 137 6.361748 GCTTCACTAAATTCACTTTGAAGCAG 59.638 38.462 22.78 0.00 43.29 4.24
137 138 6.208644 GCTTCACTAAATTCACTTTGAAGCA 58.791 36.000 22.78 0.00 43.29 3.91
138 139 5.340667 CGCTTCACTAAATTCACTTTGAAGC 59.659 40.000 19.43 19.43 41.91 3.86
139 140 6.658831 TCGCTTCACTAAATTCACTTTGAAG 58.341 36.000 5.04 5.04 40.05 3.02
140 141 6.612247 TCGCTTCACTAAATTCACTTTGAA 57.388 33.333 0.00 0.00 41.09 2.69
141 142 6.612247 TTCGCTTCACTAAATTCACTTTGA 57.388 33.333 0.00 0.00 0.00 2.69
142 143 6.142320 GGTTTCGCTTCACTAAATTCACTTTG 59.858 38.462 0.00 0.00 0.00 2.77
143 144 6.206498 GGTTTCGCTTCACTAAATTCACTTT 58.794 36.000 0.00 0.00 0.00 2.66
144 145 5.560183 CGGTTTCGCTTCACTAAATTCACTT 60.560 40.000 0.00 0.00 0.00 3.16
145 146 4.084013 CGGTTTCGCTTCACTAAATTCACT 60.084 41.667 0.00 0.00 0.00 3.41
146 147 4.084223 TCGGTTTCGCTTCACTAAATTCAC 60.084 41.667 0.00 0.00 36.13 3.18
147 148 4.059511 TCGGTTTCGCTTCACTAAATTCA 58.940 39.130 0.00 0.00 36.13 2.57
148 149 4.657075 TCGGTTTCGCTTCACTAAATTC 57.343 40.909 0.00 0.00 36.13 2.17
149 150 5.622770 AATCGGTTTCGCTTCACTAAATT 57.377 34.783 0.00 0.00 36.13 1.82
150 151 5.622770 AAATCGGTTTCGCTTCACTAAAT 57.377 34.783 0.00 0.00 36.13 1.40
151 152 5.427036 AAAATCGGTTTCGCTTCACTAAA 57.573 34.783 0.00 0.00 36.13 1.85
152 153 5.209240 CAAAAATCGGTTTCGCTTCACTAA 58.791 37.500 0.00 0.00 36.13 2.24
153 154 4.273969 ACAAAAATCGGTTTCGCTTCACTA 59.726 37.500 0.00 0.00 36.13 2.74
154 155 3.066203 ACAAAAATCGGTTTCGCTTCACT 59.934 39.130 0.00 0.00 36.13 3.41
155 156 3.179599 CACAAAAATCGGTTTCGCTTCAC 59.820 43.478 0.00 0.00 36.13 3.18
156 157 3.065510 TCACAAAAATCGGTTTCGCTTCA 59.934 39.130 0.00 0.00 36.13 3.02
157 158 3.623863 TCACAAAAATCGGTTTCGCTTC 58.376 40.909 0.00 0.00 36.13 3.86
158 159 3.701532 TCACAAAAATCGGTTTCGCTT 57.298 38.095 0.00 0.00 36.13 4.68
159 160 3.628017 CTTCACAAAAATCGGTTTCGCT 58.372 40.909 0.00 0.00 36.13 4.93
160 161 2.153057 GCTTCACAAAAATCGGTTTCGC 59.847 45.455 0.00 0.00 36.13 4.70
161 162 2.400408 CGCTTCACAAAAATCGGTTTCG 59.600 45.455 0.00 0.00 37.82 3.46
162 163 2.724174 CCGCTTCACAAAAATCGGTTTC 59.276 45.455 0.00 0.00 32.93 2.78
163 164 2.359531 TCCGCTTCACAAAAATCGGTTT 59.640 40.909 0.00 0.00 38.18 3.27
164 165 1.950909 TCCGCTTCACAAAAATCGGTT 59.049 42.857 0.00 0.00 38.18 4.44
165 166 1.535462 CTCCGCTTCACAAAAATCGGT 59.465 47.619 0.00 0.00 38.18 4.69
166 167 1.729149 GCTCCGCTTCACAAAAATCGG 60.729 52.381 0.00 0.00 38.34 4.18
167 168 1.069296 TGCTCCGCTTCACAAAAATCG 60.069 47.619 0.00 0.00 0.00 3.34
168 169 2.030805 ACTGCTCCGCTTCACAAAAATC 60.031 45.455 0.00 0.00 0.00 2.17
169 170 1.956477 ACTGCTCCGCTTCACAAAAAT 59.044 42.857 0.00 0.00 0.00 1.82
170 171 1.333619 GACTGCTCCGCTTCACAAAAA 59.666 47.619 0.00 0.00 0.00 1.94
171 172 0.944386 GACTGCTCCGCTTCACAAAA 59.056 50.000 0.00 0.00 0.00 2.44
172 173 0.884704 GGACTGCTCCGCTTCACAAA 60.885 55.000 0.00 0.00 0.00 2.83
173 174 1.301716 GGACTGCTCCGCTTCACAA 60.302 57.895 0.00 0.00 0.00 3.33
174 175 2.343758 GGACTGCTCCGCTTCACA 59.656 61.111 0.00 0.00 0.00 3.58
175 176 2.435059 GGGACTGCTCCGCTTCAC 60.435 66.667 0.00 0.00 37.46 3.18
176 177 2.050836 TTTGGGACTGCTCCGCTTCA 62.051 55.000 0.00 0.00 37.46 3.02
177 178 0.678048 ATTTGGGACTGCTCCGCTTC 60.678 55.000 0.00 0.00 37.46 3.86
178 179 0.618458 TATTTGGGACTGCTCCGCTT 59.382 50.000 0.00 0.00 37.46 4.68
179 180 0.179000 CTATTTGGGACTGCTCCGCT 59.821 55.000 0.00 0.00 37.46 5.52
180 181 0.815615 CCTATTTGGGACTGCTCCGC 60.816 60.000 0.00 0.00 37.46 5.54
181 182 0.815615 GCCTATTTGGGACTGCTCCG 60.816 60.000 0.00 0.00 37.46 4.63
182 183 0.466372 GGCCTATTTGGGACTGCTCC 60.466 60.000 0.00 0.00 36.00 4.70
183 184 0.466372 GGGCCTATTTGGGACTGCTC 60.466 60.000 0.84 0.00 34.11 4.26
184 185 0.921256 AGGGCCTATTTGGGACTGCT 60.921 55.000 2.82 0.00 34.11 4.24
185 186 0.843984 TAGGGCCTATTTGGGACTGC 59.156 55.000 9.81 0.00 34.11 4.40
186 187 3.662759 TTTAGGGCCTATTTGGGACTG 57.337 47.619 15.37 0.00 34.11 3.51
187 188 3.181443 CGATTTAGGGCCTATTTGGGACT 60.181 47.826 15.37 0.00 34.11 3.85
188 189 3.146847 CGATTTAGGGCCTATTTGGGAC 58.853 50.000 15.37 1.77 36.00 4.46
189 190 2.107552 CCGATTTAGGGCCTATTTGGGA 59.892 50.000 15.37 0.00 36.00 4.37
190 191 2.158519 ACCGATTTAGGGCCTATTTGGG 60.159 50.000 24.15 20.93 35.02 4.12
191 192 3.146847 GACCGATTTAGGGCCTATTTGG 58.853 50.000 15.37 18.99 31.48 3.28
192 193 3.815809 TGACCGATTTAGGGCCTATTTG 58.184 45.455 15.37 8.98 39.00 2.32
193 194 4.724279 ATGACCGATTTAGGGCCTATTT 57.276 40.909 15.37 4.67 39.00 1.40
194 195 4.104102 TCAATGACCGATTTAGGGCCTATT 59.896 41.667 15.37 5.07 39.00 1.73
195 196 3.650942 TCAATGACCGATTTAGGGCCTAT 59.349 43.478 15.37 0.09 39.00 2.57
196 197 3.042682 TCAATGACCGATTTAGGGCCTA 58.957 45.455 9.81 9.81 39.00 3.93
197 198 1.843851 TCAATGACCGATTTAGGGCCT 59.156 47.619 12.58 12.58 39.00 5.19
198 199 2.341846 TCAATGACCGATTTAGGGCC 57.658 50.000 0.00 0.00 39.00 5.80
199 200 4.452455 CAGTATCAATGACCGATTTAGGGC 59.548 45.833 0.00 0.00 40.61 5.19
200 201 5.611374 ACAGTATCAATGACCGATTTAGGG 58.389 41.667 0.00 0.00 35.02 3.53
201 202 8.657074 TTTACAGTATCAATGACCGATTTAGG 57.343 34.615 0.00 0.00 37.30 2.69
228 229 7.535139 TCTGGTCCAATGAACGATTTAAATTC 58.465 34.615 1.43 0.00 0.00 2.17
229 230 7.461182 TCTGGTCCAATGAACGATTTAAATT 57.539 32.000 1.43 0.00 0.00 1.82
230 231 7.461182 TTCTGGTCCAATGAACGATTTAAAT 57.539 32.000 0.00 0.00 0.00 1.40
231 232 6.885952 TTCTGGTCCAATGAACGATTTAAA 57.114 33.333 0.00 0.00 0.00 1.52
232 233 6.885952 TTTCTGGTCCAATGAACGATTTAA 57.114 33.333 0.00 0.00 0.00 1.52
233 234 6.885952 TTTTCTGGTCCAATGAACGATTTA 57.114 33.333 0.00 0.00 0.00 1.40
285 286 5.348997 GTCGCTCCAATAAATGTATCTAGCC 59.651 44.000 0.00 0.00 0.00 3.93
298 299 5.492895 TCCAAATTAGTTGTCGCTCCAATA 58.507 37.500 0.00 0.00 35.23 1.90
302 303 3.001330 CGATCCAAATTAGTTGTCGCTCC 59.999 47.826 0.00 0.00 35.23 4.70
344 345 9.880157 CAAAAGGGAGATTTCATTTTATGTCAT 57.120 29.630 0.00 0.00 0.00 3.06
346 347 8.531146 TCCAAAAGGGAGATTTCATTTTATGTC 58.469 33.333 0.00 0.00 42.15 3.06
365 366 4.060205 CAAAAACTCCATGCCTCCAAAAG 58.940 43.478 0.00 0.00 0.00 2.27
379 380 1.264288 CACACCTCGGAGCAAAAACTC 59.736 52.381 0.00 0.00 35.86 3.01
385 386 0.033504 GAGTTCACACCTCGGAGCAA 59.966 55.000 0.00 0.00 0.00 3.91
392 393 0.391597 TTCACCCGAGTTCACACCTC 59.608 55.000 0.00 0.00 0.00 3.85
393 394 1.056660 ATTCACCCGAGTTCACACCT 58.943 50.000 0.00 0.00 0.00 4.00
472 474 2.582052 TGAACGCAAATGAAAGACCCT 58.418 42.857 0.00 0.00 0.00 4.34
537 539 6.456795 AGGCATTGGAATTAGTCTTTTAGC 57.543 37.500 0.00 0.00 0.00 3.09
538 540 9.143631 CAAAAGGCATTGGAATTAGTCTTTTAG 57.856 33.333 0.00 0.00 33.59 1.85
585 588 3.560105 TGACATTTGTGGATGTGTGGAA 58.440 40.909 0.00 0.00 40.21 3.53
586 589 3.220674 TGACATTTGTGGATGTGTGGA 57.779 42.857 0.00 0.00 40.21 4.02
614 617 9.442033 GTTTTCTAACTGTGCGTAAATTTTAGT 57.558 29.630 0.00 0.00 0.00 2.24
756 785 2.054799 TGTTAGAAAGTGGAGGTGCCT 58.945 47.619 0.00 0.00 37.63 4.75
772 831 5.236911 ACGCTCCGTTTAAACAGAAATGTTA 59.763 36.000 18.07 0.00 36.35 2.41
777 836 2.288458 CCACGCTCCGTTTAAACAGAAA 59.712 45.455 18.07 0.00 38.32 2.52
882 942 0.535797 GTAGCTAGGGTTTGAGCGGT 59.464 55.000 0.00 0.00 43.72 5.68
883 943 0.179081 GGTAGCTAGGGTTTGAGCGG 60.179 60.000 0.00 0.00 43.72 5.52
910 970 2.626467 GGGCCAGGGGAGGAATTGT 61.626 63.158 4.39 0.00 0.00 2.71
935 995 1.335132 GGGGACATCCAGCTACGGAA 61.335 60.000 0.00 0.00 38.95 4.30
1038 1098 4.514577 GAGCCGCTGCCGAGCTTA 62.515 66.667 0.00 0.00 43.77 3.09
1086 1146 4.323477 CGTTCAGGCGGGGGAACA 62.323 66.667 12.37 0.00 42.67 3.18
1103 1163 3.437049 AGCTTTTAGCATCAGAACGGTTC 59.563 43.478 12.91 12.91 45.56 3.62
1108 1168 4.513000 CGAGAGCTTTTAGCATCAGAAC 57.487 45.455 1.09 0.00 45.56 3.01
1242 1302 2.058798 GAGAATTGTCGCGTCAACTCA 58.941 47.619 24.56 4.31 0.00 3.41
1243 1303 2.329379 AGAGAATTGTCGCGTCAACTC 58.671 47.619 20.47 18.87 0.00 3.01
1244 1304 2.440539 AGAGAATTGTCGCGTCAACT 57.559 45.000 20.47 10.56 0.00 3.16
1245 1305 2.411547 CCAAGAGAATTGTCGCGTCAAC 60.412 50.000 20.47 9.47 0.00 3.18
1246 1306 1.798223 CCAAGAGAATTGTCGCGTCAA 59.202 47.619 20.34 20.34 0.00 3.18
1247 1307 1.000394 TCCAAGAGAATTGTCGCGTCA 60.000 47.619 5.77 3.17 0.00 4.35
1248 1308 1.710013 TCCAAGAGAATTGTCGCGTC 58.290 50.000 5.77 0.00 0.00 5.19
1249 1309 2.386661 ATCCAAGAGAATTGTCGCGT 57.613 45.000 5.77 0.00 0.00 6.01
1250 1310 3.125146 TGAAATCCAAGAGAATTGTCGCG 59.875 43.478 0.00 0.00 0.00 5.87
1251 1311 4.656041 CTGAAATCCAAGAGAATTGTCGC 58.344 43.478 0.00 0.00 0.00 5.19
1252 1312 4.154737 TGCTGAAATCCAAGAGAATTGTCG 59.845 41.667 0.00 0.00 0.00 4.35
1253 1313 5.633830 TGCTGAAATCCAAGAGAATTGTC 57.366 39.130 0.00 0.00 0.00 3.18
1254 1314 6.888632 ACTATGCTGAAATCCAAGAGAATTGT 59.111 34.615 0.00 0.00 0.00 2.71
1255 1315 7.330900 ACTATGCTGAAATCCAAGAGAATTG 57.669 36.000 0.00 0.00 0.00 2.32
1256 1316 7.395489 ACAACTATGCTGAAATCCAAGAGAATT 59.605 33.333 0.00 0.00 0.00 2.17
1257 1317 6.888632 ACAACTATGCTGAAATCCAAGAGAAT 59.111 34.615 0.00 0.00 0.00 2.40
1258 1318 6.149973 CACAACTATGCTGAAATCCAAGAGAA 59.850 38.462 0.00 0.00 0.00 2.87
1259 1319 5.645067 CACAACTATGCTGAAATCCAAGAGA 59.355 40.000 0.00 0.00 0.00 3.10
1260 1320 5.413833 ACACAACTATGCTGAAATCCAAGAG 59.586 40.000 0.00 0.00 0.00 2.85
1261 1321 5.316167 ACACAACTATGCTGAAATCCAAGA 58.684 37.500 0.00 0.00 0.00 3.02
1262 1322 5.633830 ACACAACTATGCTGAAATCCAAG 57.366 39.130 0.00 0.00 0.00 3.61
1263 1323 6.403866 AAACACAACTATGCTGAAATCCAA 57.596 33.333 0.00 0.00 0.00 3.53
1264 1324 7.392953 TCATAAACACAACTATGCTGAAATCCA 59.607 33.333 0.00 0.00 0.00 3.41
1265 1325 7.761409 TCATAAACACAACTATGCTGAAATCC 58.239 34.615 0.00 0.00 0.00 3.01
1266 1326 9.793252 AATCATAAACACAACTATGCTGAAATC 57.207 29.630 0.00 0.00 0.00 2.17
1268 1328 9.979578 AAAATCATAAACACAACTATGCTGAAA 57.020 25.926 0.00 0.00 0.00 2.69
1345 1452 7.402862 ACCAAATAGAAATACTTGCACCTAGT 58.597 34.615 0.00 0.00 0.00 2.57
1346 1453 7.865706 ACCAAATAGAAATACTTGCACCTAG 57.134 36.000 0.00 0.00 0.00 3.02
1347 1454 9.914834 AATACCAAATAGAAATACTTGCACCTA 57.085 29.630 0.00 0.00 0.00 3.08
1348 1455 8.823220 AATACCAAATAGAAATACTTGCACCT 57.177 30.769 0.00 0.00 0.00 4.00
1477 1598 1.064389 GCCTGAAGGAATAGCCAAGGT 60.064 52.381 0.00 0.00 40.02 3.50
1588 1709 6.758416 GGCAGGAAATAGTTTTCAATGAATCC 59.242 38.462 0.00 0.00 42.55 3.01
1837 2045 1.247419 TGCACGCCACAAATAAGGGG 61.247 55.000 0.00 0.00 42.95 4.79
1926 2134 1.463674 AAGCCTGCGATAGTTTTGGG 58.536 50.000 0.00 0.00 39.35 4.12
1937 2145 0.662619 TGAACAGAACAAAGCCTGCG 59.337 50.000 0.00 0.00 33.90 5.18
2312 2520 5.477510 ACAAAGACTAGCTGATCTCTGTTG 58.522 41.667 0.00 3.72 0.00 3.33
2555 2763 4.988540 GGACAAGATGTAAGCGCATATACA 59.011 41.667 18.70 18.70 36.54 2.29
2717 2925 9.547753 CAGTAAAGTAACATCAGCCATTATACT 57.452 33.333 0.00 0.00 0.00 2.12
2718 2926 8.774586 CCAGTAAAGTAACATCAGCCATTATAC 58.225 37.037 0.00 0.00 0.00 1.47
2719 2927 7.936847 CCCAGTAAAGTAACATCAGCCATTATA 59.063 37.037 0.00 0.00 0.00 0.98
2720 2928 6.772716 CCCAGTAAAGTAACATCAGCCATTAT 59.227 38.462 0.00 0.00 0.00 1.28
2800 3022 8.664669 AAGAAAAGGATGGTTGGTAATACATT 57.335 30.769 0.00 0.00 0.00 2.71
3019 3242 7.838193 AGGGCAAGAGAGATTTAATGAAGAAAT 59.162 33.333 0.00 0.00 0.00 2.17
3044 3267 9.474920 TTCTTTAAACAAGATGGTGCATTTAAG 57.525 29.630 0.00 0.00 0.00 1.85
3574 3801 3.650139 TGAGAAGTGTCCGAAAAGTAGC 58.350 45.455 0.00 0.00 0.00 3.58
3768 3995 1.197721 CAGCGGCCTAAAACAACAGAG 59.802 52.381 0.00 0.00 0.00 3.35
4090 4318 6.846350 AGCTGAAGAAATAGCAATACAACAC 58.154 36.000 0.00 0.00 42.29 3.32
4198 4426 3.319405 GTCGTGTAGGATCATCTGACCAT 59.681 47.826 0.00 0.00 0.00 3.55
4512 4740 2.531206 GACTACGTGATGGTTCAGCTC 58.469 52.381 0.00 0.00 30.85 4.09
4513 4741 1.135373 CGACTACGTGATGGTTCAGCT 60.135 52.381 0.00 0.00 30.85 4.24
4543 4771 3.371063 GACGTCCCTGGACTCGCA 61.371 66.667 14.10 0.00 42.54 5.10
4560 4788 0.979665 TGGAGCTGAGTTTCTCTGGG 59.020 55.000 0.00 0.00 31.52 4.45
4576 4804 1.606601 CTGTGAGGTCCTCCGTGGA 60.607 63.158 16.60 0.00 43.86 4.02
4599 4827 1.686052 GCCTGGGATCAGAGTAGTCAG 59.314 57.143 0.00 0.00 43.49 3.51
4612 4840 1.347707 CTGTTAGACTTGTGCCTGGGA 59.652 52.381 0.00 0.00 0.00 4.37
4679 4907 4.298103 AGTGGATCCTATCATTGCCATC 57.702 45.455 14.23 0.00 0.00 3.51
4683 4911 6.597832 ACTAGTAGTGGATCCTATCATTGC 57.402 41.667 14.23 0.00 0.00 3.56
4687 4915 9.118367 AGAAGATACTAGTAGTGGATCCTATCA 57.882 37.037 14.23 0.00 0.00 2.15
4708 4936 4.382040 CGCTTTGTAGGATCCAGAAGAAGA 60.382 45.833 15.82 0.00 0.00 2.87
4709 4937 3.868077 CGCTTTGTAGGATCCAGAAGAAG 59.132 47.826 15.82 11.73 0.00 2.85
4710 4938 3.260884 ACGCTTTGTAGGATCCAGAAGAA 59.739 43.478 15.82 0.74 0.00 2.52
4731 4959 7.429633 ACTTCAGCAGATCACATACTATACAC 58.570 38.462 0.00 0.00 0.00 2.90
4738 4966 7.912250 CCAATTTAACTTCAGCAGATCACATAC 59.088 37.037 0.00 0.00 0.00 2.39
4769 4997 2.048222 TCAGAAAGCACGGCCTCG 60.048 61.111 0.00 0.00 43.02 4.63
4784 5012 6.239430 GGATCACATGGTAAGAGAATAGCTCA 60.239 42.308 0.00 0.00 46.45 4.26
4791 5019 5.491070 CTTGTGGATCACATGGTAAGAGAA 58.509 41.667 0.00 0.00 44.16 2.87
4796 5024 3.719268 AGCTTGTGGATCACATGGTAA 57.281 42.857 14.10 0.00 44.30 2.85
4825 5061 2.348998 CAGGCTTCCTCACCGCTT 59.651 61.111 0.00 0.00 0.00 4.68
4836 5072 2.592102 TTCTTTGGATCAGCAGGCTT 57.408 45.000 0.00 0.00 0.00 4.35
4839 5075 2.429610 CCCATTTCTTTGGATCAGCAGG 59.570 50.000 0.00 0.00 39.25 4.85
4840 5076 2.429610 CCCCATTTCTTTGGATCAGCAG 59.570 50.000 0.00 0.00 39.25 4.24
4847 5083 0.252193 CCAGCCCCCATTTCTTTGGA 60.252 55.000 0.00 0.00 39.25 3.53
4899 5135 2.052104 GCATTTAGGGCCGTGGCTT 61.052 57.895 8.57 2.36 41.60 4.35
4917 5153 1.253100 AAAACATAGGCCCAACGTGG 58.747 50.000 0.00 0.00 37.25 4.94
4939 5176 6.538742 CACAAAAGAAAACCTGTACAGAGAGA 59.461 38.462 24.68 0.00 0.00 3.10
4990 5227 8.746530 ACATAATACTCCGTACCTATTATGTGG 58.253 37.037 19.74 0.00 44.70 4.17
4999 5239 7.414222 TCTCAAAACATAATACTCCGTACCT 57.586 36.000 0.00 0.00 0.00 3.08
5000 5240 9.924650 ATATCTCAAAACATAATACTCCGTACC 57.075 33.333 0.00 0.00 0.00 3.34
5020 5260 8.894768 AGACATAACAGTTGGCTAAATATCTC 57.105 34.615 0.00 0.00 28.05 2.75
5030 5270 4.181578 ACATACGAGACATAACAGTTGGC 58.818 43.478 0.00 0.00 0.00 4.52
5032 5272 8.234887 TGTAAACATACGAGACATAACAGTTG 57.765 34.615 0.00 0.00 0.00 3.16
5033 5273 8.821147 TTGTAAACATACGAGACATAACAGTT 57.179 30.769 0.00 0.00 0.00 3.16
5058 5298 1.608590 CAAGCCAACAAGACATTCCGT 59.391 47.619 0.00 0.00 0.00 4.69
5059 5299 1.666888 GCAAGCCAACAAGACATTCCG 60.667 52.381 0.00 0.00 0.00 4.30
5099 5339 9.194972 ACATCCTTCTTTCTTTCTTTCTTTCTT 57.805 29.630 0.00 0.00 0.00 2.52
5105 5345 5.242615 AGCCACATCCTTCTTTCTTTCTTTC 59.757 40.000 0.00 0.00 0.00 2.62
5148 5388 2.844451 GCGCTCCAGGCAACAAACA 61.844 57.895 0.00 0.00 41.91 2.83
5219 5459 2.547855 GGTGTGGCCAAACAATTTCCTC 60.548 50.000 27.43 3.61 37.17 3.71
5302 5543 9.886132 TTATGGCTTTTACAACTTTTTAAACCA 57.114 25.926 0.00 0.00 0.00 3.67
5345 5586 8.202811 TGACCATGAAAACAGAATTGAATTTCA 58.797 29.630 0.00 0.00 42.19 2.69
5366 5607 1.483004 TCGTTGTGAGAAACCTGACCA 59.517 47.619 0.00 0.00 0.00 4.02
5367 5608 2.234300 TCGTTGTGAGAAACCTGACC 57.766 50.000 0.00 0.00 0.00 4.02
5382 5623 6.760291 AGGATCTAGTTTTGAAGAACTCGTT 58.240 36.000 0.00 0.00 40.24 3.85
5487 5732 7.558444 TCAGTTCTACTAGGCCAAAAAGAAAAA 59.442 33.333 5.01 0.00 0.00 1.94
5556 5801 5.629079 AGCACTAAAGTTGCCTTATGTTC 57.371 39.130 0.00 0.00 0.00 3.18
5600 5845 5.915758 GCAAAATTCACAAATACACACGGTA 59.084 36.000 0.00 0.00 36.16 4.02
5603 5848 7.166638 TGTTAGCAAAATTCACAAATACACACG 59.833 33.333 0.00 0.00 0.00 4.49
5666 5911 5.003160 TGTAGGAACTGACCATCAACAATG 58.997 41.667 0.00 0.00 41.52 2.82
5690 5935 6.979817 GCATGTATAGGCAATTGAACATCAAA 59.020 34.615 10.34 0.00 35.23 2.69
5720 5967 8.721478 GCAACTATACATCAATGGTAGGTAATG 58.279 37.037 8.56 0.00 0.00 1.90
5756 6003 7.596995 GTGCAACAATTGTAGGCAACTAATTAA 59.403 33.333 28.79 9.54 45.05 1.40
5873 6121 6.712095 GGTAGGCAACATGATGATGAATCTTA 59.288 38.462 7.22 0.00 35.88 2.10
6046 6294 8.812972 ACAACTTCACTACATTCTATGTCCTAA 58.187 33.333 0.00 0.00 43.67 2.69
6289 6539 0.729140 CGCGGCGAGCTTTTCAAAAT 60.729 50.000 19.16 0.00 45.59 1.82
6304 6554 0.935196 GTTGGCTAATTAGGTCGCGG 59.065 55.000 14.28 0.00 0.00 6.46
6315 6565 2.373335 AACACACATGGGTTGGCTAA 57.627 45.000 0.00 0.00 40.71 3.09
6359 6609 6.879993 TGGTCGAGTTGCCTACAAAATTATTA 59.120 34.615 0.00 0.00 37.58 0.98
6363 6613 3.482436 TGGTCGAGTTGCCTACAAAATT 58.518 40.909 0.00 0.00 37.58 1.82
6429 6680 6.183360 GGGTTATCAAAAATTTCATAGCGGGA 60.183 38.462 0.00 0.00 0.00 5.14
6445 6696 4.229582 AGAAGTTGCATAGGGGGTTATCAA 59.770 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.