Multiple sequence alignment - TraesCS3A01G206200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G206200 chr3A 100.000 5717 0 0 1 5717 362896561 362902277 0.000000e+00 10558.0
1 TraesCS3A01G206200 chr3D 90.069 2477 125 37 1 2427 276755280 276752875 0.000000e+00 3099.0
2 TraesCS3A01G206200 chr3D 92.336 1879 70 26 3284 5125 276752135 276750294 0.000000e+00 2604.0
3 TraesCS3A01G206200 chr3D 91.954 609 15 7 5111 5717 276750277 276749701 0.000000e+00 822.0
4 TraesCS3A01G206200 chr3D 92.023 514 19 8 2610 3123 276752625 276752134 0.000000e+00 702.0
5 TraesCS3A01G206200 chr3D 86.420 162 6 2 2455 2615 276752880 276752734 4.580000e-36 163.0
6 TraesCS3A01G206200 chr3B 90.798 978 50 24 3383 4346 373620738 373621689 0.000000e+00 1271.0
7 TraesCS3A01G206200 chr3B 90.719 959 54 16 1168 2113 373614179 373615115 0.000000e+00 1245.0
8 TraesCS3A01G206200 chr3B 93.724 733 36 5 4394 5125 373621703 373622426 0.000000e+00 1090.0
9 TraesCS3A01G206200 chr3B 95.895 609 19 3 5112 5717 373622453 373623058 0.000000e+00 981.0
10 TraesCS3A01G206200 chr3B 92.066 605 31 6 1 591 373612874 373613475 0.000000e+00 835.0
11 TraesCS3A01G206200 chr3B 93.578 327 16 4 849 1171 373613824 373614149 3.100000e-132 483.0
12 TraesCS3A01G206200 chr3B 90.462 325 18 8 2799 3111 373620309 373620632 3.190000e-112 416.0
13 TraesCS3A01G206200 chr3B 91.667 288 9 5 2143 2427 373619642 373619917 8.990000e-103 385.0
14 TraesCS3A01G206200 chr3B 94.894 235 7 2 2571 2802 373619985 373620217 4.210000e-96 363.0
15 TraesCS3A01G206200 chr3B 93.878 196 6 5 3120 3314 571752691 571752501 2.020000e-74 291.0
16 TraesCS3A01G206200 chr3B 83.588 262 16 9 577 835 373613499 373613736 2.680000e-53 220.0
17 TraesCS3A01G206200 chr3B 81.915 94 8 5 3284 3370 373620650 373620741 2.860000e-08 71.3
18 TraesCS3A01G206200 chr6D 97.661 171 3 1 3121 3290 392897140 392896970 5.600000e-75 292.0
19 TraesCS3A01G206200 chr5B 97.093 172 4 1 3122 3292 93472265 93472094 7.250000e-74 289.0
20 TraesCS3A01G206200 chr1D 96.045 177 5 2 3111 3286 238940206 238940381 2.610000e-73 287.0
21 TraesCS3A01G206200 chr1D 93.617 188 8 4 3119 3304 452848323 452848508 1.570000e-70 278.0
22 TraesCS3A01G206200 chr6A 95.556 180 5 3 3114 3292 222571237 222571414 9.380000e-73 285.0
23 TraesCS3A01G206200 chr5D 95.531 179 6 2 3111 3288 455740291 455740468 9.380000e-73 285.0
24 TraesCS3A01G206200 chr5D 93.684 190 9 3 3107 3294 303991580 303991768 1.210000e-71 281.0
25 TraesCS3A01G206200 chr5D 92.746 193 11 3 3103 3294 507218760 507218570 5.640000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G206200 chr3A 362896561 362902277 5716 False 10558.00 10558 100.000000 1 5717 1 chr3A.!!$F1 5716
1 TraesCS3A01G206200 chr3D 276749701 276755280 5579 True 1478.00 3099 90.560400 1 5717 5 chr3D.!!$R1 5716
2 TraesCS3A01G206200 chr3B 373612874 373615115 2241 False 695.75 1245 89.987750 1 2113 4 chr3B.!!$F1 2112
3 TraesCS3A01G206200 chr3B 373619642 373623058 3416 False 653.90 1271 91.336429 2143 5717 7 chr3B.!!$F2 3574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 215 0.173255 ATAAACATGGTTGCGCTGGC 59.827 50.0 9.73 0.0 40.52 4.85 F
1832 2035 0.449388 GCCATTCAGAAACGAGCCTG 59.551 55.0 0.00 0.0 0.00 4.85 F
2446 2674 0.743688 ACCTGCGCAACAATCAAACA 59.256 45.0 13.05 0.0 0.00 2.83 F
3650 4134 0.179000 CTCGGAGATCCAAACCCAGG 59.821 60.0 0.00 0.0 33.89 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 2072 1.110518 TTTCCGTTTCAAGTGGCCCC 61.111 55.0 0.0 0.0 0.00 5.80 R
3620 4104 0.259065 ATCTCCGAGTCAGGGCTGTA 59.741 55.0 0.0 0.0 0.00 2.74 R
4102 4622 0.798776 CTTTCGCCTTGTCGAGCATT 59.201 50.0 0.0 0.0 39.82 3.56 R
5125 5650 0.035152 TCTCATTGGCATCGCAAGGT 60.035 50.0 0.0 0.0 38.47 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.443876 CAAAACTATTTGCTTCAAGTCTGC 57.556 37.500 0.00 0.00 39.50 4.26
97 99 2.359214 TGAGTGCACGAGATAGGCTAAG 59.641 50.000 12.01 0.00 0.00 2.18
157 162 5.452078 TTTTCTGTTACCTGCAAATCCTG 57.548 39.130 0.00 0.00 0.00 3.86
166 171 4.261801 ACCTGCAAATCCTGTACACATAC 58.738 43.478 0.00 0.00 0.00 2.39
205 215 0.173255 ATAAACATGGTTGCGCTGGC 59.827 50.000 9.73 0.00 40.52 4.85
219 229 1.160137 GCTGGCTAAGTCAACACAGG 58.840 55.000 0.00 0.00 0.00 4.00
231 241 6.006275 AGTCAACACAGGAGCCATATAAAT 57.994 37.500 0.00 0.00 0.00 1.40
234 244 7.716998 AGTCAACACAGGAGCCATATAAATTAG 59.283 37.037 0.00 0.00 0.00 1.73
259 269 1.318251 GCGTTTTGATCTCGTGTTGC 58.682 50.000 0.00 0.00 0.00 4.17
283 298 6.311200 GCTGGTTTAGTAAAGAAATGCAATGG 59.689 38.462 0.00 0.00 0.00 3.16
323 338 4.226384 AGCCAGGAAAGACCAAGAAATTT 58.774 39.130 0.00 0.00 42.04 1.82
329 344 5.600069 AGGAAAGACCAAGAAATTTGAAGCT 59.400 36.000 0.00 0.00 42.04 3.74
332 347 5.702349 AGACCAAGAAATTTGAAGCTGAG 57.298 39.130 0.00 0.00 0.00 3.35
373 388 2.575532 GGATCCGATGGAATTGAAGCA 58.424 47.619 0.00 0.00 34.34 3.91
374 389 2.551459 GGATCCGATGGAATTGAAGCAG 59.449 50.000 0.00 0.00 34.34 4.24
375 390 1.382522 TCCGATGGAATTGAAGCAGC 58.617 50.000 0.00 0.00 0.00 5.25
383 398 2.030805 GGAATTGAAGCAGCAACGACTT 60.031 45.455 0.00 0.00 0.00 3.01
461 476 1.484038 CCTGTCCCTCTTCTCCTCTG 58.516 60.000 0.00 0.00 0.00 3.35
493 508 3.136260 AGCTCCTCTCCATTTTCTCATCC 59.864 47.826 0.00 0.00 0.00 3.51
572 589 4.776349 TCTAGCGCCTTTTGGAATGATTA 58.224 39.130 2.29 0.00 44.07 1.75
644 705 8.609478 TTTGTTTGTTGTTATCTTTTCTCGAC 57.391 30.769 0.00 0.00 0.00 4.20
666 727 1.514873 CGAGCCTTGGCGCATTTTC 60.515 57.895 10.83 1.76 0.00 2.29
673 734 1.118356 TTGGCGCATTTTCCTTGGGT 61.118 50.000 10.83 0.00 0.00 4.51
677 738 1.604147 CGCATTTTCCTTGGGTCCCC 61.604 60.000 5.13 0.00 0.00 4.81
737 800 4.960938 TGGTACATGAGGCAATACAGATC 58.039 43.478 0.00 0.00 0.00 2.75
739 802 4.993584 GGTACATGAGGCAATACAGATCAG 59.006 45.833 0.00 0.00 0.00 2.90
741 804 3.713248 ACATGAGGCAATACAGATCAGGA 59.287 43.478 0.00 0.00 0.00 3.86
742 805 3.827008 TGAGGCAATACAGATCAGGAC 57.173 47.619 0.00 0.00 0.00 3.85
743 806 3.106827 TGAGGCAATACAGATCAGGACA 58.893 45.455 0.00 0.00 0.00 4.02
744 807 3.519107 TGAGGCAATACAGATCAGGACAA 59.481 43.478 0.00 0.00 0.00 3.18
745 808 3.873952 GAGGCAATACAGATCAGGACAAC 59.126 47.826 0.00 0.00 0.00 3.32
747 810 3.609853 GCAATACAGATCAGGACAACCA 58.390 45.455 0.00 0.00 38.94 3.67
749 812 4.458989 GCAATACAGATCAGGACAACCAAA 59.541 41.667 0.00 0.00 38.94 3.28
750 813 5.126061 GCAATACAGATCAGGACAACCAAAT 59.874 40.000 0.00 0.00 38.94 2.32
751 814 6.350445 GCAATACAGATCAGGACAACCAAATT 60.350 38.462 0.00 0.00 38.94 1.82
752 815 7.605449 CAATACAGATCAGGACAACCAAATTT 58.395 34.615 0.00 0.00 38.94 1.82
753 816 7.781324 ATACAGATCAGGACAACCAAATTTT 57.219 32.000 0.00 0.00 38.94 1.82
754 817 6.484364 ACAGATCAGGACAACCAAATTTTT 57.516 33.333 0.00 0.00 38.94 1.94
823 886 8.581578 ACTAAGCTAGCTATTACAAGGAGATTC 58.418 37.037 19.70 0.00 0.00 2.52
841 904 5.501156 AGATTCCTGTTTTCATCCTGTACC 58.499 41.667 0.00 0.00 0.00 3.34
887 1042 8.806429 TTCAGAATAATGGACTAGCAAATCAA 57.194 30.769 0.00 0.00 0.00 2.57
945 1103 1.683917 TGCAGGCGGTATGTTGTTTTT 59.316 42.857 0.00 0.00 0.00 1.94
968 1126 6.909550 TTACATGCTTTTTCCTACACCAAT 57.090 33.333 0.00 0.00 0.00 3.16
1215 1406 4.041444 AGCAAACCTCTTCTTCATCTCAGT 59.959 41.667 0.00 0.00 0.00 3.41
1225 1416 4.560128 TCTTCATCTCAGTTCTTGAACCG 58.440 43.478 9.58 0.53 34.81 4.44
1250 1441 8.705134 CGTTCATAGTGTTTGTCATAACAAGTA 58.295 33.333 0.00 0.00 45.72 2.24
1257 1448 8.833493 AGTGTTTGTCATAACAAGTACTTAACC 58.167 33.333 8.04 1.30 45.72 2.85
1258 1449 7.795272 GTGTTTGTCATAACAAGTACTTAACCG 59.205 37.037 8.04 0.00 45.72 4.44
1465 1662 1.808411 TGCGTTTAGGCCAGAAGAAG 58.192 50.000 5.01 0.00 0.00 2.85
1654 1851 3.386768 TCTTGACAGACAGTTGGCTAC 57.613 47.619 0.00 0.00 0.00 3.58
1697 1894 3.003173 CCTGACCTTCGGGCCTCA 61.003 66.667 0.84 0.00 35.89 3.86
1764 1967 1.811860 GCCGGCATTGAAGCAATCT 59.188 52.632 24.80 0.00 31.05 2.40
1826 2029 1.200020 GTTGGAGGCCATTCAGAAACG 59.800 52.381 5.01 0.00 31.53 3.60
1831 2034 0.678048 GGCCATTCAGAAACGAGCCT 60.678 55.000 0.00 0.00 36.00 4.58
1832 2035 0.449388 GCCATTCAGAAACGAGCCTG 59.551 55.000 0.00 0.00 0.00 4.85
1885 2088 3.361977 CGGGGCCACTTGAAACGG 61.362 66.667 1.96 0.00 0.00 4.44
2028 2249 7.425224 TTTCACCTTCCAATTAGGTCAAAAA 57.575 32.000 0.00 0.00 44.12 1.94
2057 2278 3.662247 AACTGAGACAGACGTTTAGGG 57.338 47.619 5.76 0.00 35.18 3.53
2101 2323 1.827344 TCACTCAGGAGGCAGTACATG 59.173 52.381 0.83 0.00 0.00 3.21
2285 2513 6.667414 AGGCATGTGATTAATTACAAAAGGGA 59.333 34.615 16.05 0.00 29.82 4.20
2344 2572 3.455910 CCATGATTCCCAGAGTAGGTTGA 59.544 47.826 0.00 0.00 0.00 3.18
2345 2573 4.103785 CCATGATTCCCAGAGTAGGTTGAT 59.896 45.833 0.00 0.00 0.00 2.57
2346 2574 5.398353 CCATGATTCCCAGAGTAGGTTGATT 60.398 44.000 0.00 0.00 0.00 2.57
2347 2575 5.359194 TGATTCCCAGAGTAGGTTGATTC 57.641 43.478 0.00 0.00 0.00 2.52
2348 2576 4.782691 TGATTCCCAGAGTAGGTTGATTCA 59.217 41.667 0.00 0.00 0.00 2.57
2349 2577 4.826274 TTCCCAGAGTAGGTTGATTCAG 57.174 45.455 0.00 0.00 0.00 3.02
2350 2578 3.107601 TCCCAGAGTAGGTTGATTCAGG 58.892 50.000 0.00 0.00 0.00 3.86
2351 2579 2.840651 CCCAGAGTAGGTTGATTCAGGT 59.159 50.000 0.00 0.00 0.00 4.00
2352 2580 3.118592 CCCAGAGTAGGTTGATTCAGGTC 60.119 52.174 0.00 0.00 0.00 3.85
2379 2607 7.160726 TGCGAATGGATCATGTGAGATTTATA 58.839 34.615 0.00 0.00 0.00 0.98
2380 2608 7.825761 TGCGAATGGATCATGTGAGATTTATAT 59.174 33.333 0.00 0.00 0.00 0.86
2394 2622 8.173775 GTGAGATTTATATCACACTATGCATGC 58.826 37.037 11.82 11.82 45.60 4.06
2425 2653 9.680315 TTTTTCTAACGGTACCATGTTTATTTG 57.320 29.630 13.54 0.00 0.00 2.32
2426 2654 8.618702 TTTCTAACGGTACCATGTTTATTTGA 57.381 30.769 13.54 1.59 0.00 2.69
2427 2655 8.618702 TTCTAACGGTACCATGTTTATTTGAA 57.381 30.769 13.54 6.66 0.00 2.69
2428 2656 8.031848 TCTAACGGTACCATGTTTATTTGAAC 57.968 34.615 13.54 0.00 0.00 3.18
2429 2657 5.632244 ACGGTACCATGTTTATTTGAACC 57.368 39.130 13.54 0.00 0.00 3.62
2430 2658 5.318630 ACGGTACCATGTTTATTTGAACCT 58.681 37.500 13.54 0.00 0.00 3.50
2431 2659 5.182380 ACGGTACCATGTTTATTTGAACCTG 59.818 40.000 13.54 0.00 0.00 4.00
2432 2660 5.407502 GGTACCATGTTTATTTGAACCTGC 58.592 41.667 7.15 0.00 0.00 4.85
2433 2661 4.173036 ACCATGTTTATTTGAACCTGCG 57.827 40.909 0.00 0.00 0.00 5.18
2434 2662 2.923020 CCATGTTTATTTGAACCTGCGC 59.077 45.455 0.00 0.00 0.00 6.09
2435 2663 3.573598 CATGTTTATTTGAACCTGCGCA 58.426 40.909 10.98 10.98 0.00 6.09
2436 2664 3.717400 TGTTTATTTGAACCTGCGCAA 57.283 38.095 13.05 0.00 0.00 4.85
2437 2665 3.376540 TGTTTATTTGAACCTGCGCAAC 58.623 40.909 13.05 2.06 0.00 4.17
2438 2666 3.181486 TGTTTATTTGAACCTGCGCAACA 60.181 39.130 13.05 5.16 0.00 3.33
2439 2667 3.717400 TTATTTGAACCTGCGCAACAA 57.283 38.095 13.05 12.70 0.00 2.83
2440 2668 2.818130 ATTTGAACCTGCGCAACAAT 57.182 40.000 13.05 0.00 0.00 2.71
2441 2669 2.132740 TTTGAACCTGCGCAACAATC 57.867 45.000 13.05 8.35 0.00 2.67
2442 2670 1.028130 TTGAACCTGCGCAACAATCA 58.972 45.000 13.05 11.04 0.00 2.57
2443 2671 1.028130 TGAACCTGCGCAACAATCAA 58.972 45.000 13.05 0.00 0.00 2.57
2444 2672 1.406898 TGAACCTGCGCAACAATCAAA 59.593 42.857 13.05 0.00 0.00 2.69
2445 2673 1.786579 GAACCTGCGCAACAATCAAAC 59.213 47.619 13.05 0.00 0.00 2.93
2446 2674 0.743688 ACCTGCGCAACAATCAAACA 59.256 45.000 13.05 0.00 0.00 2.83
2447 2675 1.135915 ACCTGCGCAACAATCAAACAA 59.864 42.857 13.05 0.00 0.00 2.83
2448 2676 2.200067 CCTGCGCAACAATCAAACAAA 58.800 42.857 13.05 0.00 0.00 2.83
2449 2677 2.033832 CCTGCGCAACAATCAAACAAAC 60.034 45.455 13.05 0.00 0.00 2.93
2450 2678 2.859538 CTGCGCAACAATCAAACAAACT 59.140 40.909 13.05 0.00 0.00 2.66
2451 2679 2.602211 TGCGCAACAATCAAACAAACTG 59.398 40.909 8.16 0.00 0.00 3.16
2452 2680 2.857152 GCGCAACAATCAAACAAACTGA 59.143 40.909 0.30 0.00 0.00 3.41
2453 2681 3.305629 GCGCAACAATCAAACAAACTGAA 59.694 39.130 0.30 0.00 0.00 3.02
2608 2837 8.239998 AGAGTTTAGTTTTGAGCATTTCATAGC 58.760 33.333 0.00 0.00 35.27 2.97
2641 2984 3.371285 CGGCCTGTCTTTAGCTTTACTTC 59.629 47.826 0.00 0.00 0.00 3.01
2652 2995 7.778382 TCTTTAGCTTTACTTCCAAGGAAAAGT 59.222 33.333 11.41 6.26 38.32 2.66
2659 3002 9.516314 CTTTACTTCCAAGGAAAAGTAACTTTG 57.484 33.333 11.20 0.00 43.82 2.77
2672 3015 7.467557 AAAGTAACTTTGTGCACAATGATTG 57.532 32.000 37.64 24.57 35.55 2.67
2674 3017 7.010367 AAAGTAACTTTGTGCACAATGATTGTG 59.990 33.333 37.64 28.79 45.97 3.33
2800 3244 9.420551 AGCGATGTTTATAGGCTAAAATACTAC 57.579 33.333 0.00 0.00 31.03 2.73
2801 3245 9.420551 GCGATGTTTATAGGCTAAAATACTACT 57.579 33.333 0.00 0.00 0.00 2.57
2843 3287 2.300152 TGAGCAGAGACTTTGTCGGATT 59.700 45.455 0.00 0.00 37.67 3.01
2844 3288 3.244215 TGAGCAGAGACTTTGTCGGATTT 60.244 43.478 0.00 0.00 37.67 2.17
2845 3289 3.744660 AGCAGAGACTTTGTCGGATTTT 58.255 40.909 0.00 0.00 37.67 1.82
2901 3350 2.307098 AGGCAGTTTACAGCTCAAGGAT 59.693 45.455 0.00 0.00 0.00 3.24
2921 3370 1.333308 TCCAATGTTGTTGCTGTGTCG 59.667 47.619 0.00 0.00 0.00 4.35
2956 3411 4.408821 GTGCCGGTGCCAGATGGA 62.409 66.667 1.90 0.00 37.39 3.41
2957 3412 4.100084 TGCCGGTGCCAGATGGAG 62.100 66.667 1.90 0.00 37.39 3.86
3011 3469 4.173256 GTGCAACCAAATCCTTAATTCGG 58.827 43.478 0.00 0.00 0.00 4.30
3043 3501 5.805486 GGAAACAGAAACAAAACTCCTGAAC 59.195 40.000 0.00 0.00 0.00 3.18
3060 3518 3.058160 CAACGCAGGGCAGGAAGG 61.058 66.667 0.00 0.00 0.00 3.46
3074 3532 1.154197 GGAAGGTCCAACTGTTACGC 58.846 55.000 0.00 0.00 36.28 4.42
3130 3595 9.628500 AAACAAATGTAGAAATATACTCCCTCC 57.372 33.333 0.00 0.00 0.00 4.30
3131 3596 7.442656 ACAAATGTAGAAATATACTCCCTCCG 58.557 38.462 0.00 0.00 0.00 4.63
3132 3597 7.070821 ACAAATGTAGAAATATACTCCCTCCGT 59.929 37.037 0.00 0.00 0.00 4.69
3133 3598 7.613551 AATGTAGAAATATACTCCCTCCGTT 57.386 36.000 0.00 0.00 0.00 4.44
3134 3599 6.645790 TGTAGAAATATACTCCCTCCGTTC 57.354 41.667 0.00 0.00 0.00 3.95
3135 3600 5.537674 TGTAGAAATATACTCCCTCCGTTCC 59.462 44.000 0.00 0.00 0.00 3.62
3136 3601 4.817286 AGAAATATACTCCCTCCGTTCCT 58.183 43.478 0.00 0.00 0.00 3.36
3137 3602 5.961897 AGAAATATACTCCCTCCGTTCCTA 58.038 41.667 0.00 0.00 0.00 2.94
3138 3603 6.379579 AGAAATATACTCCCTCCGTTCCTAA 58.620 40.000 0.00 0.00 0.00 2.69
3139 3604 6.842807 AGAAATATACTCCCTCCGTTCCTAAA 59.157 38.462 0.00 0.00 0.00 1.85
3140 3605 7.513091 AGAAATATACTCCCTCCGTTCCTAAAT 59.487 37.037 0.00 0.00 0.00 1.40
3141 3606 8.731591 AAATATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
3142 3607 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
3143 3608 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
3144 3609 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3145 3610 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3146 3611 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3147 3612 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3148 3613 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3149 3614 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3150 3615 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3151 3616 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3152 3617 9.169592 CCTCCGTTCCTAAATATTTGTCTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
3154 3619 9.947433 TCCGTTCCTAAATATTTGTCTTTTAGA 57.053 29.630 11.05 0.00 35.79 2.10
3185 3650 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3186 3651 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3187 3652 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
3188 3653 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
3189 3654 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
3190 3655 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
3191 3656 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
3192 3657 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
3193 3658 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
3194 3659 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3196 3661 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3226 3691 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
3227 3692 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
3228 3693 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
3229 3694 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
3230 3695 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
3231 3696 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
3232 3697 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
3233 3698 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
3234 3699 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
3235 3700 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
3236 3701 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
3237 3702 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
3238 3703 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
3239 3704 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
3240 3705 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
3241 3706 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
3242 3707 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
3243 3708 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
3244 3709 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
3245 3710 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
3246 3711 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
3247 3712 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
3248 3713 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
3249 3714 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
3250 3715 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
3251 3716 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
3252 3717 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3253 3718 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3254 3719 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3255 3720 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3256 3721 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3257 3722 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3258 3723 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3259 3724 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3260 3725 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3261 3726 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3262 3727 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3263 3728 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3276 3741 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3277 3742 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3278 3743 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3280 3745 7.611213 AAGACAAATATTTAGGAACGGAGTG 57.389 36.000 0.00 0.00 45.00 3.51
3281 3746 6.942976 AGACAAATATTTAGGAACGGAGTGA 58.057 36.000 0.00 0.00 45.00 3.41
3282 3747 7.042335 AGACAAATATTTAGGAACGGAGTGAG 58.958 38.462 0.00 0.00 45.00 3.51
3331 3800 7.930217 TGTTAAAAAGACAGAACCTTGATGAG 58.070 34.615 0.00 0.00 0.00 2.90
3332 3801 7.556275 TGTTAAAAAGACAGAACCTTGATGAGT 59.444 33.333 0.00 0.00 0.00 3.41
3333 3802 9.052759 GTTAAAAAGACAGAACCTTGATGAGTA 57.947 33.333 0.00 0.00 0.00 2.59
3334 3803 7.497925 AAAAAGACAGAACCTTGATGAGTAC 57.502 36.000 0.00 0.00 0.00 2.73
3335 3804 4.442375 AGACAGAACCTTGATGAGTACG 57.558 45.455 0.00 0.00 0.00 3.67
3336 3805 3.827302 AGACAGAACCTTGATGAGTACGT 59.173 43.478 0.00 0.00 0.00 3.57
3337 3806 5.008331 AGACAGAACCTTGATGAGTACGTA 58.992 41.667 0.00 0.00 0.00 3.57
3339 3808 4.096311 CAGAACCTTGATGAGTACGTACG 58.904 47.826 19.49 15.01 0.00 3.67
3379 3849 4.908601 TGGACCAAATGACACTCTGTAT 57.091 40.909 0.00 0.00 0.00 2.29
3380 3850 6.013725 AGTTGGACCAAATGACACTCTGTATA 60.014 38.462 8.94 0.00 0.00 1.47
3475 3946 1.862201 CTTGCAATTTGCCAGTGTGTG 59.138 47.619 18.27 0.00 44.23 3.82
3501 3984 6.437793 AGAAGTAGTGTATTTAGCTGTCACCT 59.562 38.462 0.00 0.00 0.00 4.00
3526 4009 2.847234 CCGCCCTGCCCTACCATA 60.847 66.667 0.00 0.00 0.00 2.74
3527 4010 2.426023 CGCCCTGCCCTACCATAC 59.574 66.667 0.00 0.00 0.00 2.39
3618 4102 3.153130 TGATCTAGATCAAGGAGCTCCG 58.847 50.000 29.15 14.14 44.14 4.63
3619 4103 1.323412 TCTAGATCAAGGAGCTCCGC 58.677 55.000 26.95 14.57 42.08 5.54
3620 4104 1.133637 TCTAGATCAAGGAGCTCCGCT 60.134 52.381 26.95 20.19 43.88 5.52
3621 4105 2.106684 TCTAGATCAAGGAGCTCCGCTA 59.893 50.000 26.95 20.23 39.88 4.26
3622 4106 1.036707 AGATCAAGGAGCTCCGCTAC 58.963 55.000 26.95 17.37 39.88 3.58
3623 4107 0.747255 GATCAAGGAGCTCCGCTACA 59.253 55.000 26.95 10.94 42.99 2.74
3624 4108 0.749649 ATCAAGGAGCTCCGCTACAG 59.250 55.000 26.95 13.79 42.99 2.74
3625 4109 1.520342 CAAGGAGCTCCGCTACAGC 60.520 63.158 26.95 0.25 42.99 4.40
3650 4134 0.179000 CTCGGAGATCCAAACCCAGG 59.821 60.000 0.00 0.00 33.89 4.45
3655 4139 2.423517 GGAGATCCAAACCCAGGATTCC 60.424 54.545 0.00 0.00 45.65 3.01
3794 4283 6.791371 TCTTTCTTCCTCCTCTTCACTAGTA 58.209 40.000 0.00 0.00 0.00 1.82
3795 4284 6.887545 TCTTTCTTCCTCCTCTTCACTAGTAG 59.112 42.308 0.00 0.00 0.00 2.57
3796 4285 5.782677 TCTTCCTCCTCTTCACTAGTAGT 57.217 43.478 0.00 0.00 0.00 2.73
3890 4379 5.800296 TGTTGAGAGATCCGATTTACCAAA 58.200 37.500 0.00 0.00 0.00 3.28
3893 4382 6.049955 TGAGAGATCCGATTTACCAAAGTT 57.950 37.500 0.00 0.00 0.00 2.66
3908 4397 8.990163 TTACCAAAGTTTCCTAATGTTTCTCT 57.010 30.769 0.00 0.00 0.00 3.10
4031 4524 6.258947 GGTTGAAATGCCAAGTATAGTCTCTC 59.741 42.308 0.00 0.00 0.00 3.20
4076 4596 4.273724 GTCAAGGAAGTGAAGAACAAGGAC 59.726 45.833 0.00 0.00 0.00 3.85
4102 4622 3.266772 AGGACATGGATGCCTTAAGTTCA 59.733 43.478 0.97 0.00 32.79 3.18
4180 4700 4.186136 TCGGTCCTCGACAAGGTT 57.814 55.556 0.00 0.00 46.32 3.50
4257 4777 6.399639 ACGTGGTAAAAACTTTTGATCCAT 57.600 33.333 0.00 0.00 33.28 3.41
4258 4778 6.212955 ACGTGGTAAAAACTTTTGATCCATG 58.787 36.000 16.83 16.83 38.33 3.66
4259 4779 5.118510 CGTGGTAAAAACTTTTGATCCATGC 59.881 40.000 11.26 0.00 33.28 4.06
4260 4780 5.988561 GTGGTAAAAACTTTTGATCCATGCA 59.011 36.000 0.00 0.00 33.28 3.96
4281 4801 9.507280 CATGCAAGTCTAATTTGTACAATTAGG 57.493 33.333 23.14 15.04 39.49 2.69
4282 4802 8.856153 TGCAAGTCTAATTTGTACAATTAGGA 57.144 30.769 23.14 14.26 39.49 2.94
4309 4832 9.654663 GTAACAAGATATTTCCTGACAAGTACT 57.345 33.333 0.00 0.00 0.00 2.73
4346 4869 8.429493 TGCATCATCAAACTTCTCTAATACTG 57.571 34.615 0.00 0.00 0.00 2.74
4347 4870 7.496920 TGCATCATCAAACTTCTCTAATACTGG 59.503 37.037 0.00 0.00 0.00 4.00
4348 4871 7.497249 GCATCATCAAACTTCTCTAATACTGGT 59.503 37.037 0.00 0.00 0.00 4.00
4351 4874 9.256228 TCATCAAACTTCTCTAATACTGGTACT 57.744 33.333 0.00 0.00 0.00 2.73
4373 4896 7.141100 ACTAGTAATGTTTTGACGATTTGGG 57.859 36.000 0.00 0.00 0.00 4.12
4770 5293 5.241506 TGTCTTCATCAAAACTGAATGGTCC 59.758 40.000 0.00 0.00 32.50 4.46
4775 5298 2.228582 TCAAAACTGAATGGTCCGCATG 59.771 45.455 0.00 0.00 0.00 4.06
4797 5320 1.609239 GGTGGCTGTGGATGGATGA 59.391 57.895 0.00 0.00 0.00 2.92
4833 5356 6.237648 GCACTTGTGTGTTCTTTTGAGATTTG 60.238 38.462 2.61 0.00 45.44 2.32
4941 5466 7.253422 GGATTTGATCCTATTTATGCGAATGG 58.747 38.462 0.00 0.00 46.19 3.16
4986 5511 6.959639 TTTCAAGGCTTCAGTGTAATTTCT 57.040 33.333 0.00 0.00 0.00 2.52
5068 5593 5.910637 ACATGATTTTCACATGCACAAAC 57.089 34.783 0.00 0.00 45.95 2.93
5075 5600 4.979943 TTCACATGCACAAACAGAAAGA 57.020 36.364 0.00 0.00 0.00 2.52
5076 5601 4.979943 TCACATGCACAAACAGAAAGAA 57.020 36.364 0.00 0.00 0.00 2.52
5077 5602 5.321959 TCACATGCACAAACAGAAAGAAA 57.678 34.783 0.00 0.00 0.00 2.52
5078 5603 5.342433 TCACATGCACAAACAGAAAGAAAG 58.658 37.500 0.00 0.00 0.00 2.62
5079 5604 4.505191 CACATGCACAAACAGAAAGAAAGG 59.495 41.667 0.00 0.00 0.00 3.11
5080 5605 3.799281 TGCACAAACAGAAAGAAAGGG 57.201 42.857 0.00 0.00 0.00 3.95
5081 5606 3.360867 TGCACAAACAGAAAGAAAGGGA 58.639 40.909 0.00 0.00 0.00 4.20
5082 5607 3.766591 TGCACAAACAGAAAGAAAGGGAA 59.233 39.130 0.00 0.00 0.00 3.97
5108 5633 3.971032 ACTTGCCAAAACGAAGAAGAG 57.029 42.857 0.00 0.00 0.00 2.85
5181 5746 3.134458 GAGGCAATAGGGAACTGATTCG 58.866 50.000 0.00 0.00 43.88 3.34
5293 5858 2.410262 CGACAACGCAGCTCAAAACTAG 60.410 50.000 0.00 0.00 0.00 2.57
5294 5859 2.544267 GACAACGCAGCTCAAAACTAGT 59.456 45.455 0.00 0.00 0.00 2.57
5295 5860 3.724374 ACAACGCAGCTCAAAACTAGTA 58.276 40.909 0.00 0.00 0.00 1.82
5553 6120 4.364415 TTTGTTGCTGTTACCAGTCAAC 57.636 40.909 15.56 15.56 45.55 3.18
5708 6277 9.746711 CAATTCAAGAAAAAGTGAGAGTATACG 57.253 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.618920 ATAGTTTTGTCCGAGTCTTGGT 57.381 40.909 6.00 0.00 0.00 3.67
16 17 5.049405 AGCAAATAGTTTTGTCCGAGTCTTG 60.049 40.000 0.97 0.00 43.43 3.02
50 51 1.197428 GTGTACGTCGCAACACACG 59.803 57.895 20.57 1.77 44.30 4.49
97 99 0.952984 GTGCTGCACAAGGAGTCTCC 60.953 60.000 26.70 11.31 35.34 3.71
205 215 2.839486 TGGCTCCTGTGTTGACTTAG 57.161 50.000 0.00 0.00 0.00 2.18
219 229 5.636543 ACGCGGTTACTAATTTATATGGCTC 59.363 40.000 12.47 0.00 0.00 4.70
231 241 3.609373 CGAGATCAAAACGCGGTTACTAA 59.391 43.478 11.16 0.00 0.00 2.24
234 244 1.723003 ACGAGATCAAAACGCGGTTAC 59.277 47.619 11.16 2.26 35.15 2.50
259 269 6.311200 GCCATTGCATTTCTTTACTAAACCAG 59.689 38.462 0.00 0.00 37.47 4.00
283 298 5.385509 TGGCTAAAACTTATGAAACTGGC 57.614 39.130 0.00 0.00 0.00 4.85
323 338 2.032528 CCGCAACCCTCAGCTTCA 59.967 61.111 0.00 0.00 0.00 3.02
329 344 4.278513 CCCAACCCGCAACCCTCA 62.279 66.667 0.00 0.00 0.00 3.86
362 377 1.537202 AGTCGTTGCTGCTTCAATTCC 59.463 47.619 0.00 0.00 0.00 3.01
373 388 0.035317 TCCAGCATGAAGTCGTTGCT 59.965 50.000 0.00 3.46 39.69 3.91
374 389 0.874390 TTCCAGCATGAAGTCGTTGC 59.126 50.000 0.00 0.00 39.69 4.17
375 390 1.135859 GCTTCCAGCATGAAGTCGTTG 60.136 52.381 14.40 0.00 42.98 4.10
383 398 2.658285 CCTTTATGGCTTCCAGCATGA 58.342 47.619 0.00 0.00 44.75 3.07
394 409 2.371658 AATGCTCCTCCCTTTATGGC 57.628 50.000 0.00 0.00 0.00 4.40
461 476 2.512057 GAGGAGCTGCAGCAGAGC 60.512 66.667 38.24 23.55 45.16 4.09
572 589 9.393786 ACCTATATAACTCATTAACACCCATCT 57.606 33.333 0.00 0.00 0.00 2.90
644 705 3.729965 ATGCGCCAAGGCTCGAGAG 62.730 63.158 18.75 1.96 39.32 3.20
650 711 1.187567 AAGGAAAATGCGCCAAGGCT 61.188 50.000 4.18 0.00 39.32 4.58
651 712 1.015607 CAAGGAAAATGCGCCAAGGC 61.016 55.000 4.18 0.00 37.85 4.35
652 713 0.390209 CCAAGGAAAATGCGCCAAGG 60.390 55.000 4.18 0.00 0.00 3.61
653 714 0.390209 CCCAAGGAAAATGCGCCAAG 60.390 55.000 4.18 0.00 0.00 3.61
654 715 1.118356 ACCCAAGGAAAATGCGCCAA 61.118 50.000 4.18 0.00 0.00 4.52
655 716 1.531739 GACCCAAGGAAAATGCGCCA 61.532 55.000 4.18 0.00 0.00 5.69
656 717 1.215382 GACCCAAGGAAAATGCGCC 59.785 57.895 4.18 0.00 0.00 6.53
673 734 2.578021 CTGAAATTTGAGGAGAGGGGGA 59.422 50.000 0.00 0.00 0.00 4.81
677 738 5.560724 TGGTTACTGAAATTTGAGGAGAGG 58.439 41.667 9.54 0.00 0.00 3.69
753 816 2.224450 GGTTGTCCTCCTCCTCGAAAAA 60.224 50.000 0.00 0.00 0.00 1.94
754 817 1.346722 GGTTGTCCTCCTCCTCGAAAA 59.653 52.381 0.00 0.00 0.00 2.29
755 818 0.974383 GGTTGTCCTCCTCCTCGAAA 59.026 55.000 0.00 0.00 0.00 3.46
756 819 0.178944 TGGTTGTCCTCCTCCTCGAA 60.179 55.000 0.00 0.00 34.23 3.71
757 820 0.041238 ATGGTTGTCCTCCTCCTCGA 59.959 55.000 0.00 0.00 34.23 4.04
758 821 0.176680 CATGGTTGTCCTCCTCCTCG 59.823 60.000 0.00 0.00 34.23 4.63
759 822 0.543749 CCATGGTTGTCCTCCTCCTC 59.456 60.000 2.57 0.00 34.23 3.71
760 823 0.119155 TCCATGGTTGTCCTCCTCCT 59.881 55.000 12.58 0.00 34.23 3.69
761 824 1.216990 ATCCATGGTTGTCCTCCTCC 58.783 55.000 12.58 0.00 34.23 4.30
762 825 2.648059 CAATCCATGGTTGTCCTCCTC 58.352 52.381 12.58 0.00 34.23 3.71
763 826 1.341383 GCAATCCATGGTTGTCCTCCT 60.341 52.381 20.87 0.00 34.23 3.69
764 827 1.106285 GCAATCCATGGTTGTCCTCC 58.894 55.000 20.87 7.13 34.23 4.30
765 828 2.134789 AGCAATCCATGGTTGTCCTC 57.865 50.000 20.87 9.86 35.94 3.71
823 886 3.081804 GGTGGTACAGGATGAAAACAGG 58.918 50.000 0.00 0.00 41.80 4.00
835 898 5.277828 GCTTGTGTCTTAAAAGGTGGTACAG 60.278 44.000 0.00 0.00 41.80 2.74
841 904 7.173218 TCTGAATAGCTTGTGTCTTAAAAGGTG 59.827 37.037 0.00 0.00 33.88 4.00
945 1103 6.909550 ATTGGTGTAGGAAAAAGCATGTAA 57.090 33.333 0.00 0.00 0.00 2.41
954 1112 7.585806 ACACTGCAAGAATTGGTGTAGGAAAA 61.586 38.462 4.03 0.00 45.34 2.29
958 1116 3.149196 ACACTGCAAGAATTGGTGTAGG 58.851 45.455 4.03 1.41 45.34 3.18
968 1126 3.181455 TGCTTCCTCTTACACTGCAAGAA 60.181 43.478 0.00 0.00 37.43 2.52
1193 1384 4.322567 ACTGAGATGAAGAAGAGGTTTGC 58.677 43.478 0.00 0.00 0.00 3.68
1215 1406 5.587043 ACAAACACTATGAACGGTTCAAGAA 59.413 36.000 25.64 13.92 43.95 2.52
1225 1416 9.807386 GTACTTGTTATGACAAACACTATGAAC 57.193 33.333 4.47 0.00 44.65 3.18
1250 1441 5.887035 AGAACTCTACTGCTATCGGTTAAGT 59.113 40.000 0.00 0.00 33.08 2.24
1255 1446 3.887352 TCAGAACTCTACTGCTATCGGT 58.113 45.455 0.00 0.00 35.61 4.69
1257 1448 4.449405 TCGATCAGAACTCTACTGCTATCG 59.551 45.833 0.00 0.00 40.29 2.92
1258 1449 5.237561 TGTCGATCAGAACTCTACTGCTATC 59.762 44.000 0.00 0.00 35.61 2.08
1439 1636 1.401905 CTGGCCTAAACGCAAATCTCC 59.598 52.381 3.32 0.00 0.00 3.71
1440 1637 2.356135 TCTGGCCTAAACGCAAATCTC 58.644 47.619 3.32 0.00 0.00 2.75
1443 1640 2.790433 TCTTCTGGCCTAAACGCAAAT 58.210 42.857 3.32 0.00 0.00 2.32
1465 1662 6.198966 GGTTGATGTCAGTGTCAAAAATGTTC 59.801 38.462 0.00 0.00 36.23 3.18
1654 1851 8.352942 GCAGGAGGAAATTATTAAGGTTACATG 58.647 37.037 0.00 0.00 0.00 3.21
1696 1893 3.243035 CCTCTCTTCAGCGTCTGTAGATG 60.243 52.174 13.48 10.54 37.30 2.90
1697 1894 2.948979 CCTCTCTTCAGCGTCTGTAGAT 59.051 50.000 13.48 0.00 37.30 1.98
1764 1967 3.706373 GCCTGAGCCCGTCTCCAA 61.706 66.667 0.31 0.00 41.18 3.53
1826 2029 1.135333 CCTAGTTCCTTCGACAGGCTC 59.865 57.143 8.32 5.00 43.55 4.70
1831 2034 5.255687 TGTATGTACCTAGTTCCTTCGACA 58.744 41.667 0.00 0.00 0.00 4.35
1832 2035 5.356470 ACTGTATGTACCTAGTTCCTTCGAC 59.644 44.000 0.00 0.00 0.00 4.20
1869 2072 1.110518 TTTCCGTTTCAAGTGGCCCC 61.111 55.000 0.00 0.00 0.00 5.80
1885 2088 1.253100 TTGCAGGTCCCGGAAATTTC 58.747 50.000 9.83 9.83 0.00 2.17
1979 2182 6.896860 AGCTGAGCTGAATCATATATAGGAGT 59.103 38.462 5.97 0.00 37.57 3.85
1982 2185 8.039538 TGAAAGCTGAGCTGAATCATATATAGG 58.960 37.037 8.16 0.00 39.62 2.57
1983 2186 8.871862 GTGAAAGCTGAGCTGAATCATATATAG 58.128 37.037 8.16 0.00 39.62 1.31
1984 2187 7.821359 GGTGAAAGCTGAGCTGAATCATATATA 59.179 37.037 8.16 0.00 39.62 0.86
2114 2336 6.521162 TGTTCAAGTATCTACTTCTGCAACA 58.479 36.000 0.00 5.05 44.19 3.33
2285 2513 3.257375 TGCAATCACTACCTGTTACGTCT 59.743 43.478 0.00 0.00 0.00 4.18
2344 2572 2.715749 TCCATTCGCATGACCTGAAT 57.284 45.000 0.00 0.00 32.77 2.57
2345 2573 2.093021 TGATCCATTCGCATGACCTGAA 60.093 45.455 0.00 0.00 31.07 3.02
2346 2574 1.485895 TGATCCATTCGCATGACCTGA 59.514 47.619 0.00 0.00 31.07 3.86
2347 2575 1.957668 TGATCCATTCGCATGACCTG 58.042 50.000 0.00 0.00 31.07 4.00
2348 2576 2.158711 ACATGATCCATTCGCATGACCT 60.159 45.455 0.00 0.00 41.35 3.85
2349 2577 2.031420 CACATGATCCATTCGCATGACC 60.031 50.000 0.00 0.00 41.35 4.02
2350 2578 2.874086 TCACATGATCCATTCGCATGAC 59.126 45.455 0.00 0.00 41.35 3.06
2351 2579 3.135994 CTCACATGATCCATTCGCATGA 58.864 45.455 0.00 0.00 41.35 3.07
2352 2580 3.135994 TCTCACATGATCCATTCGCATG 58.864 45.455 0.00 0.00 43.70 4.06
2379 2607 5.395682 AAAAACAGCATGCATAGTGTGAT 57.604 34.783 21.98 5.58 42.53 3.06
2380 2608 4.852134 AAAAACAGCATGCATAGTGTGA 57.148 36.364 21.98 0.00 42.53 3.58
2421 2649 2.035704 TGATTGTTGCGCAGGTTCAAAT 59.964 40.909 11.31 5.63 0.00 2.32
2422 2650 1.406898 TGATTGTTGCGCAGGTTCAAA 59.593 42.857 11.31 0.45 0.00 2.69
2423 2651 1.028130 TGATTGTTGCGCAGGTTCAA 58.972 45.000 11.31 14.94 0.00 2.69
2424 2652 1.028130 TTGATTGTTGCGCAGGTTCA 58.972 45.000 11.31 10.13 0.00 3.18
2425 2653 1.786579 GTTTGATTGTTGCGCAGGTTC 59.213 47.619 11.31 7.46 0.00 3.62
2426 2654 1.135915 TGTTTGATTGTTGCGCAGGTT 59.864 42.857 11.31 0.00 0.00 3.50
2427 2655 0.743688 TGTTTGATTGTTGCGCAGGT 59.256 45.000 11.31 0.00 0.00 4.00
2428 2656 1.850377 TTGTTTGATTGTTGCGCAGG 58.150 45.000 11.31 0.00 0.00 4.85
2429 2657 2.859538 AGTTTGTTTGATTGTTGCGCAG 59.140 40.909 11.31 0.00 0.00 5.18
2430 2658 2.602211 CAGTTTGTTTGATTGTTGCGCA 59.398 40.909 5.66 5.66 0.00 6.09
2431 2659 2.857152 TCAGTTTGTTTGATTGTTGCGC 59.143 40.909 0.00 0.00 0.00 6.09
2432 2660 5.447478 TTTCAGTTTGTTTGATTGTTGCG 57.553 34.783 0.00 0.00 0.00 4.85
2433 2661 7.961827 TCAAATTTCAGTTTGTTTGATTGTTGC 59.038 29.630 0.00 0.00 39.50 4.17
2434 2662 9.480538 CTCAAATTTCAGTTTGTTTGATTGTTG 57.519 29.630 0.00 0.00 39.15 3.33
2435 2663 9.218440 ACTCAAATTTCAGTTTGTTTGATTGTT 57.782 25.926 0.00 0.00 39.15 2.83
2436 2664 8.776376 ACTCAAATTTCAGTTTGTTTGATTGT 57.224 26.923 0.00 0.00 39.15 2.71
2440 2668 8.502387 CCAAAACTCAAATTTCAGTTTGTTTGA 58.498 29.630 19.21 0.00 41.09 2.69
2441 2669 8.502387 TCCAAAACTCAAATTTCAGTTTGTTTG 58.498 29.630 19.21 13.87 41.09 2.93
2442 2670 8.614469 TCCAAAACTCAAATTTCAGTTTGTTT 57.386 26.923 19.21 3.11 41.09 2.83
2443 2671 8.667463 CATCCAAAACTCAAATTTCAGTTTGTT 58.333 29.630 19.21 3.79 41.09 2.83
2444 2672 7.823799 ACATCCAAAACTCAAATTTCAGTTTGT 59.176 29.630 19.21 11.24 41.09 2.83
2445 2673 8.200364 ACATCCAAAACTCAAATTTCAGTTTG 57.800 30.769 19.21 10.66 41.09 2.93
2446 2674 8.791327 AACATCCAAAACTCAAATTTCAGTTT 57.209 26.923 13.73 13.73 43.28 2.66
2447 2675 8.667463 CAAACATCCAAAACTCAAATTTCAGTT 58.333 29.630 1.06 1.06 34.16 3.16
2448 2676 8.040132 TCAAACATCCAAAACTCAAATTTCAGT 58.960 29.630 0.00 0.00 0.00 3.41
2449 2677 8.422973 TCAAACATCCAAAACTCAAATTTCAG 57.577 30.769 0.00 0.00 0.00 3.02
2450 2678 8.961294 ATCAAACATCCAAAACTCAAATTTCA 57.039 26.923 0.00 0.00 0.00 2.69
2453 2681 9.480053 CAGTATCAAACATCCAAAACTCAAATT 57.520 29.630 0.00 0.00 0.00 1.82
2533 2762 1.660167 GCCGCCGAAATAGTAACCTT 58.340 50.000 0.00 0.00 0.00 3.50
2562 2791 2.679642 TTTGATGCTTGGGCCGGG 60.680 61.111 2.18 0.00 37.74 5.73
2563 2792 0.679640 TAGTTTGATGCTTGGGCCGG 60.680 55.000 0.00 0.00 37.74 6.13
2564 2793 0.734889 CTAGTTTGATGCTTGGGCCG 59.265 55.000 0.00 0.00 37.74 6.13
2565 2794 2.019984 CTCTAGTTTGATGCTTGGGCC 58.980 52.381 0.00 0.00 37.74 5.80
2566 2795 2.716217 ACTCTAGTTTGATGCTTGGGC 58.284 47.619 0.00 0.00 39.26 5.36
2567 2796 5.940470 ACTAAACTCTAGTTTGATGCTTGGG 59.060 40.000 16.48 1.30 46.56 4.12
2568 2797 7.440523 AACTAAACTCTAGTTTGATGCTTGG 57.559 36.000 16.48 0.00 46.56 3.61
2569 2798 9.173939 CAAAACTAAACTCTAGTTTGATGCTTG 57.826 33.333 16.48 10.06 46.56 4.01
2641 2984 4.803613 GTGCACAAAGTTACTTTTCCTTGG 59.196 41.667 13.17 0.00 30.60 3.61
2800 3244 6.351711 TCACAATCAGGGATGTTCTGAATAG 58.648 40.000 0.00 0.00 43.43 1.73
2801 3245 6.312141 TCACAATCAGGGATGTTCTGAATA 57.688 37.500 0.00 0.00 43.43 1.75
2802 3246 5.183530 TCACAATCAGGGATGTTCTGAAT 57.816 39.130 0.00 0.00 43.43 2.57
2861 3305 8.618702 ACTGCCTCTTCATCAGAATATTATTG 57.381 34.615 0.00 0.00 32.31 1.90
2901 3350 1.333308 CGACACAGCAACAACATTGGA 59.667 47.619 0.00 0.00 0.00 3.53
2921 3370 1.878522 CATGGACGCCAGCTACGAC 60.879 63.158 14.58 8.52 36.75 4.34
2944 3393 1.555075 TCAACTACTCCATCTGGCACC 59.445 52.381 0.00 0.00 34.44 5.01
2956 3411 4.806330 CGTGTGTATCAAGGTCAACTACT 58.194 43.478 0.00 0.00 0.00 2.57
2957 3412 3.367025 GCGTGTGTATCAAGGTCAACTAC 59.633 47.826 0.00 0.00 0.00 2.73
3011 3469 1.340889 TGTTTCTGTTTCCATGCTGGC 59.659 47.619 0.00 0.00 37.47 4.85
3043 3501 3.058160 CCTTCCTGCCCTGCGTTG 61.058 66.667 0.00 0.00 0.00 4.10
3060 3518 2.000429 ATACGGCGTAACAGTTGGAC 58.000 50.000 24.81 0.00 0.00 4.02
3074 3532 3.119743 TCCGCGGACATAAGAATATACGG 60.120 47.826 27.28 0.00 38.27 4.02
3121 3586 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3122 3587 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3123 3588 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3124 3589 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3125 3590 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3126 3591 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3128 3593 9.947433 TCTAAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 37.29 4.69
3149 3614 9.967451 TGTGGTAGTCCATTTGAAATATCTAAA 57.033 29.630 0.00 0.00 46.20 1.85
3152 3617 9.561069 GTATGTGGTAGTCCATTTGAAATATCT 57.439 33.333 0.00 0.00 46.20 1.98
3153 3618 8.495949 CGTATGTGGTAGTCCATTTGAAATATC 58.504 37.037 0.00 0.00 46.20 1.63
3154 3619 7.444183 CCGTATGTGGTAGTCCATTTGAAATAT 59.556 37.037 0.00 0.00 46.20 1.28
3155 3620 6.764085 CCGTATGTGGTAGTCCATTTGAAATA 59.236 38.462 0.00 0.00 46.20 1.40
3156 3621 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
3157 3622 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3158 3623 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3159 3624 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
3160 3625 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3161 3626 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3162 3627 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3163 3628 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3164 3629 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3165 3630 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
3166 3631 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
3167 3632 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
3168 3633 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
3170 3635 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3203 3668 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
3204 3669 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
3205 3670 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
3206 3671 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
3207 3672 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
3208 3673 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
3209 3674 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
3210 3675 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
3211 3676 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
3212 3677 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
3213 3678 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
3214 3679 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
3215 3680 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
3216 3681 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
3217 3682 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
3218 3683 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
3219 3684 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
3220 3685 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
3221 3686 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
3222 3687 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
3223 3688 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
3224 3689 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
3225 3690 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
3226 3691 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3227 3692 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3229 3694 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3230 3695 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3231 3696 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3232 3697 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3233 3698 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3234 3699 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3235 3700 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3236 3701 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3237 3702 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3250 3715 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3251 3716 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3252 3717 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3253 3718 8.101419 ACTCCGTTCCTAAATATTTGTCTTTCT 58.899 33.333 11.05 0.00 0.00 2.52
3254 3719 8.175716 CACTCCGTTCCTAAATATTTGTCTTTC 58.824 37.037 11.05 0.00 0.00 2.62
3255 3720 7.881232 TCACTCCGTTCCTAAATATTTGTCTTT 59.119 33.333 11.05 0.00 0.00 2.52
3256 3721 7.391620 TCACTCCGTTCCTAAATATTTGTCTT 58.608 34.615 11.05 0.00 0.00 3.01
3257 3722 6.942976 TCACTCCGTTCCTAAATATTTGTCT 58.057 36.000 11.05 0.00 0.00 3.41
3258 3723 6.817140 ACTCACTCCGTTCCTAAATATTTGTC 59.183 38.462 11.05 0.00 0.00 3.18
3259 3724 6.708285 ACTCACTCCGTTCCTAAATATTTGT 58.292 36.000 11.05 0.00 0.00 2.83
3260 3725 8.888579 ATACTCACTCCGTTCCTAAATATTTG 57.111 34.615 11.05 1.40 0.00 2.32
3262 3727 9.978044 GTAATACTCACTCCGTTCCTAAATATT 57.022 33.333 0.00 0.00 0.00 1.28
3263 3728 9.364653 AGTAATACTCACTCCGTTCCTAAATAT 57.635 33.333 0.00 0.00 0.00 1.28
3264 3729 8.627403 CAGTAATACTCACTCCGTTCCTAAATA 58.373 37.037 0.00 0.00 0.00 1.40
3265 3730 7.123847 ACAGTAATACTCACTCCGTTCCTAAAT 59.876 37.037 0.00 0.00 0.00 1.40
3266 3731 6.435277 ACAGTAATACTCACTCCGTTCCTAAA 59.565 38.462 0.00 0.00 0.00 1.85
3267 3732 5.948162 ACAGTAATACTCACTCCGTTCCTAA 59.052 40.000 0.00 0.00 0.00 2.69
3268 3733 5.503927 ACAGTAATACTCACTCCGTTCCTA 58.496 41.667 0.00 0.00 0.00 2.94
3269 3734 4.342359 ACAGTAATACTCACTCCGTTCCT 58.658 43.478 0.00 0.00 0.00 3.36
3270 3735 4.715527 ACAGTAATACTCACTCCGTTCC 57.284 45.455 0.00 0.00 0.00 3.62
3271 3736 9.793252 TTAAATACAGTAATACTCACTCCGTTC 57.207 33.333 0.00 0.00 0.00 3.95
3307 3776 7.931275 ACTCATCAAGGTTCTGTCTTTTTAAC 58.069 34.615 0.00 0.00 0.00 2.01
3312 3781 5.221461 ACGTACTCATCAAGGTTCTGTCTTT 60.221 40.000 0.00 0.00 0.00 2.52
3322 3791 8.792831 ATAAAATACGTACGTACTCATCAAGG 57.207 34.615 28.99 7.67 33.01 3.61
3325 3794 9.786105 TCAAATAAAATACGTACGTACTCATCA 57.214 29.630 28.99 13.23 33.01 3.07
3327 3796 9.023967 GGTCAAATAAAATACGTACGTACTCAT 57.976 33.333 28.99 17.51 33.01 2.90
3331 3800 7.275560 ACTGGGTCAAATAAAATACGTACGTAC 59.724 37.037 28.99 15.90 33.01 3.67
3332 3801 7.319646 ACTGGGTCAAATAAAATACGTACGTA 58.680 34.615 28.62 28.62 34.87 3.57
3333 3802 6.165577 ACTGGGTCAAATAAAATACGTACGT 58.834 36.000 25.98 25.98 0.00 3.57
3334 3803 6.651755 ACTGGGTCAAATAAAATACGTACG 57.348 37.500 15.01 15.01 0.00 3.67
3335 3804 7.119553 TCCAACTGGGTCAAATAAAATACGTAC 59.880 37.037 0.00 0.00 38.11 3.67
3336 3805 7.119553 GTCCAACTGGGTCAAATAAAATACGTA 59.880 37.037 0.00 0.00 38.11 3.57
3337 3806 6.005198 TCCAACTGGGTCAAATAAAATACGT 58.995 36.000 0.00 0.00 38.11 3.57
3339 3808 6.209788 TGGTCCAACTGGGTCAAATAAAATAC 59.790 38.462 0.00 0.00 38.11 1.89
3394 3865 2.520039 CGCTCGCACGATGCAGAAT 61.520 57.895 9.95 0.00 45.36 2.40
3395 3866 3.181290 CGCTCGCACGATGCAGAA 61.181 61.111 9.95 0.00 45.36 3.02
3475 3946 6.752815 GGTGACAGCTAAATACACTACTTCTC 59.247 42.308 0.00 0.00 0.00 2.87
3525 4008 2.681848 GTGCCGAAGTGCTCTAGTAGTA 59.318 50.000 0.00 0.00 0.00 1.82
3526 4009 1.473278 GTGCCGAAGTGCTCTAGTAGT 59.527 52.381 0.00 0.00 0.00 2.73
3527 4010 1.746220 AGTGCCGAAGTGCTCTAGTAG 59.254 52.381 0.00 0.00 33.61 2.57
3614 4098 2.010582 GAGTCAGGGCTGTAGCGGAG 62.011 65.000 0.00 0.00 43.26 4.63
3615 4099 2.037367 AGTCAGGGCTGTAGCGGA 59.963 61.111 0.00 0.00 43.26 5.54
3618 4102 2.010582 CTCCGAGTCAGGGCTGTAGC 62.011 65.000 0.00 0.00 41.14 3.58
3619 4103 0.394488 TCTCCGAGTCAGGGCTGTAG 60.394 60.000 0.00 0.00 0.00 2.74
3620 4104 0.259065 ATCTCCGAGTCAGGGCTGTA 59.741 55.000 0.00 0.00 0.00 2.74
3621 4105 1.000993 ATCTCCGAGTCAGGGCTGT 59.999 57.895 0.00 0.00 0.00 4.40
3622 4106 1.739049 GATCTCCGAGTCAGGGCTG 59.261 63.158 0.00 0.00 0.00 4.85
3623 4107 1.456705 GGATCTCCGAGTCAGGGCT 60.457 63.158 0.00 0.00 0.00 5.19
3624 4108 1.330655 TTGGATCTCCGAGTCAGGGC 61.331 60.000 0.00 0.00 39.43 5.19
3625 4109 1.134670 GTTTGGATCTCCGAGTCAGGG 60.135 57.143 0.00 0.00 39.43 4.45
3650 4134 3.238597 AGGTATGAGGAGCTCAGGAATC 58.761 50.000 17.19 5.69 44.08 2.52
3655 4139 5.543507 ATTTGTAGGTATGAGGAGCTCAG 57.456 43.478 17.19 0.00 44.08 3.35
3908 4397 9.935241 ACGAGACGGATCTTAATATAGTAGTTA 57.065 33.333 0.00 0.00 34.34 2.24
3915 4404 8.837389 CATATGGACGAGACGGATCTTAATATA 58.163 37.037 0.00 0.00 34.34 0.86
3916 4405 7.682261 GCATATGGACGAGACGGATCTTAATAT 60.682 40.741 4.56 0.00 34.34 1.28
3985 4478 8.145122 TCAACCACAAAAACTTTGGTATTATCC 58.855 33.333 4.30 0.00 43.08 2.59
4006 4499 6.116126 AGAGACTATACTTGGCATTTCAACC 58.884 40.000 0.00 0.00 0.00 3.77
4031 4524 8.378172 TGACCTGAAGAAATTAACTAGTGTTG 57.622 34.615 0.00 0.00 37.59 3.33
4076 4596 2.431954 AAGGCATCCATGTCCTTCTG 57.568 50.000 8.59 0.00 38.82 3.02
4102 4622 0.798776 CTTTCGCCTTGTCGAGCATT 59.201 50.000 0.00 0.00 39.82 3.56
4180 4700 3.009033 CCATGACTTCTGGGTGGTTCTTA 59.991 47.826 0.00 0.00 0.00 2.10
4257 4777 8.856153 TCCTAATTGTACAAATTAGACTTGCA 57.144 30.769 24.33 0.00 40.77 4.08
4258 4778 8.947115 ACTCCTAATTGTACAAATTAGACTTGC 58.053 33.333 24.33 0.00 40.77 4.01
4281 4801 8.779354 ACTTGTCAGGAAATATCTTGTTACTC 57.221 34.615 0.00 0.00 34.45 2.59
4282 4802 9.654663 GTACTTGTCAGGAAATATCTTGTTACT 57.345 33.333 0.00 0.00 34.45 2.24
4309 4832 2.364647 TGATGATGCAGCAACAAACCAA 59.635 40.909 12.84 0.00 0.00 3.67
4346 4869 8.173130 CCAAATCGTCAAAACATTACTAGTACC 58.827 37.037 0.91 0.00 0.00 3.34
4347 4870 8.173130 CCCAAATCGTCAAAACATTACTAGTAC 58.827 37.037 0.91 0.00 0.00 2.73
4348 4871 7.879160 ACCCAAATCGTCAAAACATTACTAGTA 59.121 33.333 0.00 0.00 0.00 1.82
4350 4873 7.094975 TGACCCAAATCGTCAAAACATTACTAG 60.095 37.037 0.00 0.00 37.31 2.57
4351 4874 6.711194 TGACCCAAATCGTCAAAACATTACTA 59.289 34.615 0.00 0.00 37.31 1.82
4392 4915 9.103861 GGTTCTTTCTCTTTGGATTCTGTATAG 57.896 37.037 0.00 0.00 0.00 1.31
4393 4916 8.047310 GGGTTCTTTCTCTTTGGATTCTGTATA 58.953 37.037 0.00 0.00 0.00 1.47
4394 4917 6.887002 GGGTTCTTTCTCTTTGGATTCTGTAT 59.113 38.462 0.00 0.00 0.00 2.29
4775 5298 2.361610 CATCCACAGCCACCCCAC 60.362 66.667 0.00 0.00 0.00 4.61
4797 5320 4.291540 CACACAAGTGCAAACTGTACAT 57.708 40.909 0.00 0.00 39.21 2.29
4833 5356 7.877612 ACATTAAGGACAATCCCAAAATGAAAC 59.122 33.333 15.78 0.00 37.19 2.78
5104 5629 6.777782 AGGTTCACATGAAGATCTTTCTCTT 58.222 36.000 9.87 0.00 38.18 2.85
5108 5633 5.397326 GCAAGGTTCACATGAAGATCTTTC 58.603 41.667 9.87 3.85 34.27 2.62
5125 5650 0.035152 TCTCATTGGCATCGCAAGGT 60.035 50.000 0.00 0.00 38.47 3.50
5127 5652 2.011947 TCTTCTCATTGGCATCGCAAG 58.988 47.619 0.00 0.00 0.00 4.01
5165 5730 7.391620 TCAAGTTTACGAATCAGTTCCCTATT 58.608 34.615 0.00 0.00 0.00 1.73
5181 5746 3.279434 CCCTGGCTACCATCAAGTTTAC 58.721 50.000 0.00 0.00 30.82 2.01
5553 6120 1.517257 ACGCGAGAAAGCTCATCCG 60.517 57.895 15.93 0.00 41.36 4.18
5690 6257 8.907685 GCAGATATCGTATACTCTCACTTTTTC 58.092 37.037 0.56 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.