Multiple sequence alignment - TraesCS3A01G205100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G205100 chr3A 100.000 4773 0 0 1 4773 360820699 360825471 0.000000e+00 8815.0
1 TraesCS3A01G205100 chr3A 86.923 130 15 2 1638 1766 127914885 127915013 1.380000e-30 145.0
2 TraesCS3A01G205100 chr3A 90.741 108 10 0 1622 1729 698037281 698037174 1.380000e-30 145.0
3 TraesCS3A01G205100 chr3A 81.416 113 20 1 4292 4404 245400840 245400951 1.830000e-14 91.6
4 TraesCS3A01G205100 chr3A 91.935 62 5 0 1703 1764 623612793 623612854 2.370000e-13 87.9
5 TraesCS3A01G205100 chr3A 86.667 75 10 0 1698 1772 88204767 88204841 3.060000e-12 84.2
6 TraesCS3A01G205100 chr3D 96.088 3425 95 14 571 3962 278453896 278450478 0.000000e+00 5546.0
7 TraesCS3A01G205100 chr3D 96.217 423 11 2 4356 4773 278450475 278450053 0.000000e+00 688.0
8 TraesCS3A01G205100 chr3D 88.696 115 13 0 1619 1733 71506495 71506609 1.790000e-29 141.0
9 TraesCS3A01G205100 chr3D 88.991 109 9 3 1765 1871 4197019 4197126 1.080000e-26 132.0
10 TraesCS3A01G205100 chr3D 92.308 91 7 0 1764 1854 429306238 429306328 3.880000e-26 130.0
11 TraesCS3A01G205100 chr3D 91.954 87 7 0 1768 1854 157099442 157099356 6.490000e-24 122.0
12 TraesCS3A01G205100 chr3D 80.240 167 21 6 1853 2009 582021114 582020950 1.090000e-21 115.0
13 TraesCS3A01G205100 chr3B 97.007 2372 60 6 1502 3866 372237253 372239620 0.000000e+00 3976.0
14 TraesCS3A01G205100 chr3B 96.837 664 17 3 512 1174 372235093 372235753 0.000000e+00 1107.0
15 TraesCS3A01G205100 chr3B 92.946 482 21 7 4303 4773 372240297 372240776 0.000000e+00 689.0
16 TraesCS3A01G205100 chr3B 93.667 300 11 3 3848 4147 372239635 372239926 4.380000e-120 442.0
17 TraesCS3A01G205100 chr3B 98.578 211 2 1 1274 1483 372235891 372236101 5.830000e-99 372.0
18 TraesCS3A01G205100 chr3B 91.795 195 10 5 320 511 372199266 372199457 2.830000e-67 267.0
19 TraesCS3A01G205100 chr3B 85.833 120 14 2 4292 4410 167250751 167250868 1.800000e-24 124.0
20 TraesCS3A01G205100 chr3B 83.824 136 14 6 4310 4439 584108966 584109099 6.490000e-24 122.0
21 TraesCS3A01G205100 chr7A 90.741 108 10 0 1622 1729 691677872 691677765 1.380000e-30 145.0
22 TraesCS3A01G205100 chr7A 78.344 157 20 8 1855 2001 479838054 479837902 6.580000e-14 89.8
23 TraesCS3A01G205100 chr7A 90.000 60 4 2 1943 2001 721994241 721994299 5.120000e-10 76.8
24 TraesCS3A01G205100 chr6A 90.090 111 11 0 1619 1729 472393655 472393765 1.380000e-30 145.0
25 TraesCS3A01G205100 chr6A 82.090 134 15 8 4292 4420 574234915 574235044 6.530000e-19 106.0
26 TraesCS3A01G205100 chr5A 90.741 108 10 0 1622 1729 410796232 410796339 1.380000e-30 145.0
27 TraesCS3A01G205100 chr5A 77.586 174 23 10 1853 2012 651552922 651553093 1.830000e-14 91.6
28 TraesCS3A01G205100 chr5A 78.125 160 16 10 1855 2001 222143373 222143220 3.060000e-12 84.2
29 TraesCS3A01G205100 chr5A 77.483 151 23 9 1853 2001 342228722 342228581 3.960000e-11 80.5
30 TraesCS3A01G205100 chr7B 85.926 135 14 3 4292 4423 2509184 2509052 6.440000e-29 139.0
31 TraesCS3A01G205100 chr7B 92.391 92 6 1 1765 1855 103891437 103891528 3.880000e-26 130.0
32 TraesCS3A01G205100 chr6B 84.848 132 18 2 1637 1767 655863659 655863789 1.080000e-26 132.0
33 TraesCS3A01G205100 chr6B 82.143 140 18 5 4292 4426 189214925 189215062 3.900000e-21 113.0
34 TraesCS3A01G205100 chr5D 91.954 87 7 0 1768 1854 420277140 420277226 6.490000e-24 122.0
35 TraesCS3A01G205100 chr5B 85.000 120 15 2 4292 4410 522945787 522945670 8.390000e-23 119.0
36 TraesCS3A01G205100 chr4D 90.323 93 5 1 1768 1860 322662508 322662596 8.390000e-23 119.0
37 TraesCS3A01G205100 chr4D 91.228 57 5 0 65 121 8933924 8933980 1.420000e-10 78.7
38 TraesCS3A01G205100 chr1A 87.379 103 11 1 1761 1861 589902708 589902810 3.020000e-22 117.0
39 TraesCS3A01G205100 chr1A 81.343 134 19 6 4290 4420 580497284 580497154 2.350000e-18 104.0
40 TraesCS3A01G205100 chr2A 93.103 58 4 0 1709 1766 54824817 54824760 8.510000e-13 86.1
41 TraesCS3A01G205100 chr4A 90.323 62 5 1 1709 1769 133833356 133833417 3.960000e-11 80.5
42 TraesCS3A01G205100 chr1B 95.918 49 2 0 1952 2000 519445454 519445502 3.960000e-11 80.5
43 TraesCS3A01G205100 chr2B 81.818 88 13 3 35 121 590855232 590855147 2.380000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G205100 chr3A 360820699 360825471 4772 False 8815.0 8815 100.0000 1 4773 1 chr3A.!!$F4 4772
1 TraesCS3A01G205100 chr3D 278450053 278453896 3843 True 3117.0 5546 96.1525 571 4773 2 chr3D.!!$R3 4202
2 TraesCS3A01G205100 chr3B 372235093 372240776 5683 False 1317.2 3976 95.8070 512 4773 5 chr3B.!!$F4 4261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 443 0.179081 ATTTAGTCCCTCGCCGAAGC 60.179 55.0 0.0 0.00 0.00 3.86 F
1363 1506 0.464373 CGGTGCCAAGTATGCTCCAT 60.464 55.0 0.0 0.00 41.34 3.41 F
2985 4264 1.185618 TGTACAAGAGAGTGGCGCCT 61.186 55.0 29.7 8.29 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 3408 0.592637 CAATCAAGCGGAGTGTTGCA 59.407 50.0 1.45 0.0 36.86 4.08 R
3135 4414 0.250467 ACCACGAGCTTCATTGCTGT 60.250 50.0 0.00 0.0 44.17 4.40 R
4168 5486 0.187361 TGGAGGGGGTGTTTTCTTGG 59.813 55.0 0.00 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.939201 TGAATGCACATTTTAAGAACTTTTCA 57.061 26.923 0.00 0.00 0.00 2.69
29 30 9.376075 TGAATGCACATTTTAAGAACTTTTCAA 57.624 25.926 0.00 0.00 0.00 2.69
33 34 9.160496 TGCACATTTTAAGAACTTTTCAATTGT 57.840 25.926 5.13 0.00 0.00 2.71
104 105 6.929587 TCAAAATTTGACACGAAAAACGAA 57.070 29.167 4.03 0.00 38.99 3.85
105 106 6.972941 TCAAAATTTGACACGAAAAACGAAG 58.027 32.000 4.03 0.00 38.99 3.79
106 107 6.583050 TCAAAATTTGACACGAAAAACGAAGT 59.417 30.769 4.03 0.00 38.99 3.01
107 108 5.925189 AATTTGACACGAAAAACGAAGTG 57.075 34.783 0.00 0.00 45.00 3.16
108 109 3.392769 TTGACACGAAAAACGAAGTGG 57.607 42.857 0.00 0.00 45.00 4.00
109 110 2.348660 TGACACGAAAAACGAAGTGGT 58.651 42.857 0.00 0.00 45.00 4.16
110 111 2.743126 TGACACGAAAAACGAAGTGGTT 59.257 40.909 0.00 0.00 45.00 3.67
111 112 3.188873 TGACACGAAAAACGAAGTGGTTT 59.811 39.130 0.00 0.00 45.00 3.27
113 114 3.915569 ACACGAAAAACGAAGTGGTTTTG 59.084 39.130 5.14 0.00 46.35 2.44
114 115 3.915569 CACGAAAAACGAAGTGGTTTTGT 59.084 39.130 5.14 0.00 46.35 2.83
115 116 5.087397 CACGAAAAACGAAGTGGTTTTGTA 58.913 37.500 5.14 0.00 46.35 2.41
116 117 5.740099 CACGAAAAACGAAGTGGTTTTGTAT 59.260 36.000 5.14 0.00 46.35 2.29
117 118 6.906143 CACGAAAAACGAAGTGGTTTTGTATA 59.094 34.615 5.14 0.00 46.35 1.47
118 119 7.588488 CACGAAAAACGAAGTGGTTTTGTATAT 59.412 33.333 5.14 0.00 46.35 0.86
119 120 8.772705 ACGAAAAACGAAGTGGTTTTGTATATA 58.227 29.630 5.14 0.00 46.35 0.86
120 121 9.596677 CGAAAAACGAAGTGGTTTTGTATATAA 57.403 29.630 5.14 0.00 46.35 0.98
188 189 7.870588 AGACTGAGTACATTTTTACGAGAAC 57.129 36.000 0.00 0.00 0.00 3.01
189 190 6.867293 AGACTGAGTACATTTTTACGAGAACC 59.133 38.462 0.00 0.00 0.00 3.62
190 191 6.518493 ACTGAGTACATTTTTACGAGAACCA 58.482 36.000 0.00 0.00 0.00 3.67
191 192 6.423001 ACTGAGTACATTTTTACGAGAACCAC 59.577 38.462 0.00 0.00 0.00 4.16
192 193 6.518493 TGAGTACATTTTTACGAGAACCACT 58.482 36.000 0.00 0.00 0.00 4.00
193 194 7.660112 TGAGTACATTTTTACGAGAACCACTA 58.340 34.615 0.00 0.00 0.00 2.74
194 195 8.143193 TGAGTACATTTTTACGAGAACCACTAA 58.857 33.333 0.00 0.00 0.00 2.24
195 196 8.302965 AGTACATTTTTACGAGAACCACTAAC 57.697 34.615 0.00 0.00 0.00 2.34
196 197 6.549912 ACATTTTTACGAGAACCACTAACC 57.450 37.500 0.00 0.00 0.00 2.85
197 198 5.178067 ACATTTTTACGAGAACCACTAACCG 59.822 40.000 0.00 0.00 0.00 4.44
198 199 2.352503 TTACGAGAACCACTAACCGC 57.647 50.000 0.00 0.00 0.00 5.68
199 200 1.538047 TACGAGAACCACTAACCGCT 58.462 50.000 0.00 0.00 0.00 5.52
200 201 0.243095 ACGAGAACCACTAACCGCTC 59.757 55.000 0.00 0.00 0.00 5.03
201 202 0.797249 CGAGAACCACTAACCGCTCG 60.797 60.000 0.00 0.00 39.12 5.03
202 203 0.458025 GAGAACCACTAACCGCTCGG 60.458 60.000 6.79 6.79 42.03 4.63
236 237 6.509317 TTTTTCGAAATGTGATCAAACAGC 57.491 33.333 12.12 0.00 32.52 4.40
237 238 4.827304 TTCGAAATGTGATCAAACAGCA 57.173 36.364 0.00 0.00 32.52 4.41
238 239 4.827304 TCGAAATGTGATCAAACAGCAA 57.173 36.364 0.00 0.00 32.52 3.91
239 240 5.375417 TCGAAATGTGATCAAACAGCAAT 57.625 34.783 0.00 0.00 32.52 3.56
240 241 5.771469 TCGAAATGTGATCAAACAGCAATT 58.229 33.333 0.00 0.00 32.52 2.32
241 242 6.907741 TCGAAATGTGATCAAACAGCAATTA 58.092 32.000 0.00 0.00 32.52 1.40
242 243 7.022979 TCGAAATGTGATCAAACAGCAATTAG 58.977 34.615 0.00 0.00 32.52 1.73
243 244 6.803320 CGAAATGTGATCAAACAGCAATTAGT 59.197 34.615 0.00 0.00 32.52 2.24
244 245 7.201291 CGAAATGTGATCAAACAGCAATTAGTG 60.201 37.037 0.00 0.00 32.52 2.74
245 246 5.375417 TGTGATCAAACAGCAATTAGTGG 57.625 39.130 0.00 0.00 0.00 4.00
246 247 4.826733 TGTGATCAAACAGCAATTAGTGGT 59.173 37.500 0.00 0.00 38.97 4.16
247 248 5.301551 TGTGATCAAACAGCAATTAGTGGTT 59.698 36.000 0.00 0.00 35.13 3.67
248 249 5.858581 GTGATCAAACAGCAATTAGTGGTTC 59.141 40.000 0.00 0.00 35.13 3.62
249 250 5.769662 TGATCAAACAGCAATTAGTGGTTCT 59.230 36.000 0.00 0.00 35.13 3.01
250 251 5.437289 TCAAACAGCAATTAGTGGTTCTG 57.563 39.130 0.00 0.00 35.13 3.02
251 252 4.887071 TCAAACAGCAATTAGTGGTTCTGT 59.113 37.500 0.00 0.00 35.13 3.41
252 253 5.359576 TCAAACAGCAATTAGTGGTTCTGTT 59.640 36.000 0.00 0.00 43.87 3.16
253 254 6.544197 TCAAACAGCAATTAGTGGTTCTGTTA 59.456 34.615 5.95 0.00 41.98 2.41
254 255 6.952773 AACAGCAATTAGTGGTTCTGTTAA 57.047 33.333 3.91 0.00 41.31 2.01
255 256 6.952773 ACAGCAATTAGTGGTTCTGTTAAA 57.047 33.333 0.00 0.00 35.13 1.52
256 257 7.524717 ACAGCAATTAGTGGTTCTGTTAAAT 57.475 32.000 0.00 0.00 35.13 1.40
257 258 7.951591 ACAGCAATTAGTGGTTCTGTTAAATT 58.048 30.769 0.00 0.00 35.13 1.82
258 259 8.421002 ACAGCAATTAGTGGTTCTGTTAAATTT 58.579 29.630 0.00 0.00 35.13 1.82
259 260 9.260002 CAGCAATTAGTGGTTCTGTTAAATTTT 57.740 29.630 0.00 0.00 35.13 1.82
260 261 9.830975 AGCAATTAGTGGTTCTGTTAAATTTTT 57.169 25.926 0.00 0.00 32.77 1.94
281 282 9.719355 ATTTTTACTGAAAACAGTCCTTTTTGT 57.281 25.926 6.15 0.00 39.87 2.83
283 284 9.628746 TTTTACTGAAAACAGTCCTTTTTGTAC 57.371 29.630 6.15 0.00 36.68 2.90
284 285 6.827586 ACTGAAAACAGTCCTTTTTGTACA 57.172 33.333 0.00 0.00 0.00 2.90
285 286 7.404671 ACTGAAAACAGTCCTTTTTGTACAT 57.595 32.000 0.00 0.00 0.00 2.29
286 287 7.836842 ACTGAAAACAGTCCTTTTTGTACATT 58.163 30.769 0.00 0.00 0.00 2.71
287 288 8.311109 ACTGAAAACAGTCCTTTTTGTACATTT 58.689 29.630 0.00 0.00 0.00 2.32
288 289 9.150348 CTGAAAACAGTCCTTTTTGTACATTTT 57.850 29.630 0.00 0.00 0.00 1.82
289 290 9.495572 TGAAAACAGTCCTTTTTGTACATTTTT 57.504 25.926 0.00 0.00 0.00 1.94
293 294 8.623310 ACAGTCCTTTTTGTACATTTTTAACG 57.377 30.769 0.00 0.00 0.00 3.18
294 295 8.245491 ACAGTCCTTTTTGTACATTTTTAACGT 58.755 29.630 0.00 0.00 0.00 3.99
295 296 9.078753 CAGTCCTTTTTGTACATTTTTAACGTT 57.921 29.630 5.88 5.88 0.00 3.99
296 297 9.642327 AGTCCTTTTTGTACATTTTTAACGTTT 57.358 25.926 5.91 0.00 0.00 3.60
297 298 9.678247 GTCCTTTTTGTACATTTTTAACGTTTG 57.322 29.630 5.91 0.00 0.00 2.93
298 299 9.635520 TCCTTTTTGTACATTTTTAACGTTTGA 57.364 25.926 5.91 0.00 0.00 2.69
299 300 9.894439 CCTTTTTGTACATTTTTAACGTTTGAG 57.106 29.630 5.91 0.00 0.00 3.02
302 303 7.972623 TTGTACATTTTTAACGTTTGAGTGG 57.027 32.000 5.91 0.00 0.00 4.00
303 304 7.086230 TGTACATTTTTAACGTTTGAGTGGT 57.914 32.000 5.91 1.83 0.00 4.16
304 305 7.536855 TGTACATTTTTAACGTTTGAGTGGTT 58.463 30.769 5.91 0.00 0.00 3.67
305 306 8.027771 TGTACATTTTTAACGTTTGAGTGGTTT 58.972 29.630 5.91 0.00 0.00 3.27
306 307 7.892778 ACATTTTTAACGTTTGAGTGGTTTT 57.107 28.000 5.91 0.00 0.00 2.43
307 308 8.983307 ACATTTTTAACGTTTGAGTGGTTTTA 57.017 26.923 5.91 0.00 0.00 1.52
308 309 9.078753 ACATTTTTAACGTTTGAGTGGTTTTAG 57.921 29.630 5.91 0.00 0.00 1.85
309 310 8.536407 CATTTTTAACGTTTGAGTGGTTTTAGG 58.464 33.333 5.91 0.00 0.00 2.69
310 311 3.703286 AACGTTTGAGTGGTTTTAGGC 57.297 42.857 0.00 0.00 0.00 3.93
311 312 1.951602 ACGTTTGAGTGGTTTTAGGCC 59.048 47.619 0.00 0.00 0.00 5.19
312 313 1.268625 CGTTTGAGTGGTTTTAGGCCC 59.731 52.381 0.00 0.00 0.00 5.80
313 314 2.312390 GTTTGAGTGGTTTTAGGCCCA 58.688 47.619 0.00 0.00 0.00 5.36
314 315 2.696187 GTTTGAGTGGTTTTAGGCCCAA 59.304 45.455 0.00 0.00 31.17 4.12
315 316 2.757894 TGAGTGGTTTTAGGCCCAAA 57.242 45.000 0.00 0.00 31.17 3.28
316 317 3.033659 TGAGTGGTTTTAGGCCCAAAA 57.966 42.857 4.85 4.85 31.17 2.44
317 318 3.375699 TGAGTGGTTTTAGGCCCAAAAA 58.624 40.909 10.82 9.84 31.17 1.94
350 351 9.857957 TTCTGTTAAAATTTTACTGAAAACGGT 57.142 25.926 10.18 0.00 37.37 4.83
359 360 9.642327 AATTTTACTGAAAACGGTACTTTTTGT 57.358 25.926 9.56 7.41 39.88 2.83
361 362 9.553418 TTTTACTGAAAACGGTACTTTTTGTAC 57.447 29.630 9.56 0.00 39.88 2.90
387 388 4.915158 TTTACGTTTGGGTGGTTTTAGG 57.085 40.909 0.00 0.00 0.00 2.69
388 389 1.034356 ACGTTTGGGTGGTTTTAGGC 58.966 50.000 0.00 0.00 0.00 3.93
389 390 1.033574 CGTTTGGGTGGTTTTAGGCA 58.966 50.000 0.00 0.00 0.00 4.75
390 391 1.409427 CGTTTGGGTGGTTTTAGGCAA 59.591 47.619 0.00 0.00 0.00 4.52
391 392 2.159085 CGTTTGGGTGGTTTTAGGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
392 393 3.493524 CGTTTGGGTGGTTTTAGGCAAAT 60.494 43.478 0.00 0.00 0.00 2.32
393 394 4.456535 GTTTGGGTGGTTTTAGGCAAATT 58.543 39.130 0.00 0.00 0.00 1.82
394 395 3.760580 TGGGTGGTTTTAGGCAAATTG 57.239 42.857 0.00 0.00 0.00 2.32
395 396 2.224402 TGGGTGGTTTTAGGCAAATTGC 60.224 45.455 9.87 9.87 44.08 3.56
396 397 2.065512 GGTGGTTTTAGGCAAATTGCG 58.934 47.619 12.15 0.00 46.21 4.85
397 398 2.288518 GGTGGTTTTAGGCAAATTGCGA 60.289 45.455 12.15 0.00 46.21 5.10
398 399 2.729360 GTGGTTTTAGGCAAATTGCGAC 59.271 45.455 12.15 5.39 46.21 5.19
399 400 1.982913 GGTTTTAGGCAAATTGCGACG 59.017 47.619 12.15 0.00 46.21 5.12
400 401 2.606065 GGTTTTAGGCAAATTGCGACGT 60.606 45.455 12.15 0.00 46.21 4.34
401 402 3.365164 GGTTTTAGGCAAATTGCGACGTA 60.365 43.478 12.15 0.00 46.21 3.57
402 403 4.220572 GTTTTAGGCAAATTGCGACGTAA 58.779 39.130 12.15 0.00 46.21 3.18
403 404 4.688511 TTTAGGCAAATTGCGACGTAAT 57.311 36.364 12.15 5.26 46.21 1.89
404 405 4.688511 TTAGGCAAATTGCGACGTAATT 57.311 36.364 16.75 16.75 46.21 1.40
405 406 2.862512 AGGCAAATTGCGACGTAATTG 58.137 42.857 21.91 16.60 46.21 2.32
406 407 2.227865 AGGCAAATTGCGACGTAATTGT 59.772 40.909 21.91 11.09 46.21 2.71
407 408 2.341168 GGCAAATTGCGACGTAATTGTG 59.659 45.455 21.91 20.21 46.21 3.33
408 409 2.341168 GCAAATTGCGACGTAATTGTGG 59.659 45.455 21.91 15.76 31.71 4.17
409 410 3.560503 CAAATTGCGACGTAATTGTGGT 58.439 40.909 21.91 6.15 29.11 4.16
410 411 2.892373 ATTGCGACGTAATTGTGGTG 57.108 45.000 5.26 0.00 0.00 4.17
411 412 1.867166 TTGCGACGTAATTGTGGTGA 58.133 45.000 0.00 0.00 0.00 4.02
412 413 1.424403 TGCGACGTAATTGTGGTGAG 58.576 50.000 0.00 0.00 0.00 3.51
413 414 1.269883 TGCGACGTAATTGTGGTGAGT 60.270 47.619 0.00 0.00 0.00 3.41
414 415 1.796459 GCGACGTAATTGTGGTGAGTT 59.204 47.619 0.00 0.00 0.00 3.01
415 416 2.222445 GCGACGTAATTGTGGTGAGTTT 59.778 45.455 0.00 0.00 0.00 2.66
416 417 3.303526 GCGACGTAATTGTGGTGAGTTTT 60.304 43.478 0.00 0.00 0.00 2.43
417 418 4.787245 GCGACGTAATTGTGGTGAGTTTTT 60.787 41.667 0.00 0.00 0.00 1.94
437 438 5.632244 TTTTTGTAATTTAGTCCCTCGCC 57.368 39.130 0.00 0.00 0.00 5.54
438 439 2.589798 TGTAATTTAGTCCCTCGCCG 57.410 50.000 0.00 0.00 0.00 6.46
439 440 2.101783 TGTAATTTAGTCCCTCGCCGA 58.898 47.619 0.00 0.00 0.00 5.54
440 441 2.496871 TGTAATTTAGTCCCTCGCCGAA 59.503 45.455 0.00 0.00 0.00 4.30
441 442 2.311124 AATTTAGTCCCTCGCCGAAG 57.689 50.000 0.00 0.00 0.00 3.79
442 443 0.179081 ATTTAGTCCCTCGCCGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
443 444 1.537814 TTTAGTCCCTCGCCGAAGCA 61.538 55.000 0.00 0.00 39.83 3.91
444 445 1.945354 TTAGTCCCTCGCCGAAGCAG 61.945 60.000 0.00 0.00 39.83 4.24
445 446 4.821589 GTCCCTCGCCGAAGCAGG 62.822 72.222 0.00 0.00 39.83 4.85
453 454 3.854669 CCGAAGCAGGGCTCGGAT 61.855 66.667 17.98 0.00 45.13 4.18
454 455 2.187946 CGAAGCAGGGCTCGGATT 59.812 61.111 0.00 0.00 38.25 3.01
455 456 2.176273 CGAAGCAGGGCTCGGATTG 61.176 63.158 0.00 0.00 38.25 2.67
456 457 1.821332 GAAGCAGGGCTCGGATTGG 60.821 63.158 0.00 0.00 38.25 3.16
457 458 3.350031 AAGCAGGGCTCGGATTGGG 62.350 63.158 0.00 0.00 38.25 4.12
458 459 4.883354 GCAGGGCTCGGATTGGGG 62.883 72.222 0.00 0.00 0.00 4.96
459 460 4.195334 CAGGGCTCGGATTGGGGG 62.195 72.222 0.00 0.00 0.00 5.40
460 461 4.760220 AGGGCTCGGATTGGGGGT 62.760 66.667 0.00 0.00 0.00 4.95
461 462 3.739613 GGGCTCGGATTGGGGGTT 61.740 66.667 0.00 0.00 0.00 4.11
462 463 2.359011 GGCTCGGATTGGGGGTTT 59.641 61.111 0.00 0.00 0.00 3.27
463 464 2.052104 GGCTCGGATTGGGGGTTTG 61.052 63.158 0.00 0.00 0.00 2.93
464 465 1.001393 GCTCGGATTGGGGGTTTGA 60.001 57.895 0.00 0.00 0.00 2.69
465 466 0.610785 GCTCGGATTGGGGGTTTGAA 60.611 55.000 0.00 0.00 0.00 2.69
466 467 1.959989 GCTCGGATTGGGGGTTTGAAT 60.960 52.381 0.00 0.00 0.00 2.57
467 468 2.024414 CTCGGATTGGGGGTTTGAATC 58.976 52.381 0.00 0.00 0.00 2.52
468 469 1.356059 TCGGATTGGGGGTTTGAATCA 59.644 47.619 0.00 0.00 0.00 2.57
469 470 2.024464 TCGGATTGGGGGTTTGAATCAT 60.024 45.455 0.00 0.00 0.00 2.45
470 471 2.765699 CGGATTGGGGGTTTGAATCATT 59.234 45.455 0.00 0.00 0.00 2.57
471 472 3.197549 CGGATTGGGGGTTTGAATCATTT 59.802 43.478 0.00 0.00 0.00 2.32
472 473 4.404073 CGGATTGGGGGTTTGAATCATTTA 59.596 41.667 0.00 0.00 0.00 1.40
473 474 5.670485 GGATTGGGGGTTTGAATCATTTAC 58.330 41.667 0.00 0.00 0.00 2.01
474 475 5.396324 GGATTGGGGGTTTGAATCATTTACC 60.396 44.000 0.00 2.32 0.00 2.85
475 476 3.445987 TGGGGGTTTGAATCATTTACCC 58.554 45.455 16.01 16.01 46.25 3.69
481 482 7.994425 GGGTTTGAATCATTTACCCAATTTT 57.006 32.000 18.17 0.00 46.24 1.82
483 484 9.679661 GGGTTTGAATCATTTACCCAATTTTAT 57.320 29.630 18.17 0.00 46.24 1.40
504 505 8.658840 TTTATATGGGGCTTGATAATTTACCC 57.341 34.615 0.00 0.00 37.20 3.69
508 509 3.910989 GGGCTTGATAATTTACCCCAGT 58.089 45.455 0.00 0.00 0.00 4.00
509 510 4.286707 GGGCTTGATAATTTACCCCAGTT 58.713 43.478 0.00 0.00 0.00 3.16
510 511 5.451354 GGGCTTGATAATTTACCCCAGTTA 58.549 41.667 0.00 0.00 0.00 2.24
529 530 0.839946 ATGTCAGTGGATAGTGGCCC 59.160 55.000 0.00 0.00 30.66 5.80
545 546 3.706373 CCTGGACCCACCCGTCAG 61.706 72.222 0.00 0.00 38.00 3.51
547 548 1.608336 CTGGACCCACCCGTCAGTA 60.608 63.158 0.00 0.00 38.00 2.74
935 937 9.959749 CTGGTAGTACTTATCAGATTCTTCTTC 57.040 37.037 0.00 0.00 42.16 2.87
1029 1031 1.684983 CCCATGGCATCAAACCTCATC 59.315 52.381 6.09 0.00 0.00 2.92
1066 1068 2.353208 CCTGCGCTTCTACTTCTGTCTT 60.353 50.000 9.73 0.00 0.00 3.01
1363 1506 0.464373 CGGTGCCAAGTATGCTCCAT 60.464 55.000 0.00 0.00 41.34 3.41
1869 3147 7.656542 GGAGGGAGTATTTTACAACTATACAGC 59.343 40.741 0.00 0.00 0.00 4.40
1941 3219 2.857483 TGCCCCAAATATCCATGTACG 58.143 47.619 0.00 0.00 0.00 3.67
1980 3258 3.186119 ACAAAACATTCCAGCAACAACG 58.814 40.909 0.00 0.00 0.00 4.10
2044 3322 9.136323 ACTTGAAAGAGACCAAAGATTATGTTT 57.864 29.630 0.00 0.00 0.00 2.83
2121 3399 5.073311 AGAGACAGTATTGCGTGTAACAT 57.927 39.130 0.00 0.00 35.74 2.71
2130 3408 8.978539 CAGTATTGCGTGTAACATAAGATGTAT 58.021 33.333 0.00 0.00 44.07 2.29
2431 3709 6.967652 AGGGAAAGGGTAAGTGGTACTAATTA 59.032 38.462 0.00 0.00 32.80 1.40
2687 3966 2.423538 GGTCCATGTCATTGCTTGTACC 59.576 50.000 0.00 0.00 0.00 3.34
2707 3986 6.644181 TGTACCGTTGTTGTATCGAATTGTTA 59.356 34.615 0.00 0.00 0.00 2.41
2933 4212 9.237846 CTTTTTCTTCTGACACCTTAAATTGTC 57.762 33.333 8.55 8.55 42.18 3.18
2985 4264 1.185618 TGTACAAGAGAGTGGCGCCT 61.186 55.000 29.70 8.29 0.00 5.52
3036 4315 6.609212 ACATCTCTAATCAGAAAGAGGCACTA 59.391 38.462 11.48 0.00 41.55 2.74
3048 4327 9.003658 CAGAAAGAGGCACTAGAATAAGAAAAA 57.996 33.333 0.00 0.00 41.55 1.94
3059 4338 8.175716 ACTAGAATAAGAAAAATAGTTGCGTGC 58.824 33.333 0.00 0.00 0.00 5.34
3135 4414 2.595095 GGGATGTCGGGAATGGCA 59.405 61.111 0.00 0.00 0.00 4.92
3350 4629 1.394917 GTCGTCGAGGTAGCTTTACGA 59.605 52.381 21.46 21.46 37.05 3.43
3362 4641 8.699283 AGGTAGCTTTACGAAAACAAGTATAG 57.301 34.615 0.00 0.00 0.00 1.31
3373 4657 7.013529 CGAAAACAAGTATAGTAACCTGCAAC 58.986 38.462 0.00 0.00 0.00 4.17
3392 4676 4.672413 GCAACATGTCAAGAGAGTTTTTCG 59.328 41.667 0.00 0.00 0.00 3.46
3426 4710 0.880278 CACTGGTCGTCCAACAGGTG 60.880 60.000 2.32 3.80 43.81 4.00
3554 4838 3.950395 AGCAGAGCACTGAAAAAGAAAGT 59.050 39.130 15.88 0.00 46.03 2.66
3559 4843 5.014808 AGCACTGAAAAAGAAAGTTGCAT 57.985 34.783 0.00 0.00 0.00 3.96
3691 4976 0.170561 ACGAGCTGTACAAGGTAGCG 59.829 55.000 0.00 1.35 42.10 4.26
3763 5048 1.601759 GGCCAAAGTGCAGAGCTCA 60.602 57.895 17.77 0.00 0.00 4.26
3974 5292 7.653647 TGGTATGTTTGTAATCAAGTTTGGTC 58.346 34.615 0.00 0.00 34.88 4.02
3986 5304 1.344438 AGTTTGGTCATCGCAGTCAGA 59.656 47.619 0.00 0.00 0.00 3.27
4066 5384 2.285977 ACCGTGACCACTTCTCAAAAC 58.714 47.619 0.00 0.00 0.00 2.43
4067 5385 2.285083 CCGTGACCACTTCTCAAAACA 58.715 47.619 0.00 0.00 0.00 2.83
4068 5386 2.680841 CCGTGACCACTTCTCAAAACAA 59.319 45.455 0.00 0.00 0.00 2.83
4069 5387 3.127895 CCGTGACCACTTCTCAAAACAAA 59.872 43.478 0.00 0.00 0.00 2.83
4070 5388 4.380023 CCGTGACCACTTCTCAAAACAAAA 60.380 41.667 0.00 0.00 0.00 2.44
4071 5389 5.157781 CGTGACCACTTCTCAAAACAAAAA 58.842 37.500 0.00 0.00 0.00 1.94
4072 5390 5.060446 CGTGACCACTTCTCAAAACAAAAAC 59.940 40.000 0.00 0.00 0.00 2.43
4073 5391 5.923684 GTGACCACTTCTCAAAACAAAAACA 59.076 36.000 0.00 0.00 0.00 2.83
4077 5395 8.214721 ACCACTTCTCAAAACAAAAACAAAAA 57.785 26.923 0.00 0.00 0.00 1.94
4092 5410 3.427309 AAAAACCAACGGTGTGTGC 57.573 47.368 0.00 0.00 35.34 4.57
4104 5422 0.234625 GTGTGTGCGTGTGTATGTGG 59.765 55.000 0.00 0.00 0.00 4.17
4114 5432 3.122780 CGTGTGTATGTGGTGTGTATGTG 59.877 47.826 0.00 0.00 0.00 3.21
4147 5465 9.693739 TCTTTGAAGCTTTGGTTCCATTATATA 57.306 29.630 0.00 0.00 39.02 0.86
4158 5476 9.624037 TTGGTTCCATTATATATACTACACCCT 57.376 33.333 0.00 0.00 0.00 4.34
4159 5477 9.263446 TGGTTCCATTATATATACTACACCCTC 57.737 37.037 0.00 0.00 0.00 4.30
4160 5478 8.702819 GGTTCCATTATATATACTACACCCTCC 58.297 40.741 0.00 0.00 0.00 4.30
4161 5479 9.490083 GTTCCATTATATATACTACACCCTCCT 57.510 37.037 0.00 0.00 0.00 3.69
4167 5485 5.803237 ATATACTACACCCTCCTTTTCCG 57.197 43.478 0.00 0.00 0.00 4.30
4168 5486 0.323957 ACTACACCCTCCTTTTCCGC 59.676 55.000 0.00 0.00 0.00 5.54
4169 5487 0.392595 CTACACCCTCCTTTTCCGCC 60.393 60.000 0.00 0.00 0.00 6.13
4170 5488 1.128809 TACACCCTCCTTTTCCGCCA 61.129 55.000 0.00 0.00 0.00 5.69
4171 5489 1.228429 CACCCTCCTTTTCCGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
4172 5490 1.074951 ACCCTCCTTTTCCGCCAAG 59.925 57.895 0.00 0.00 0.00 3.61
4173 5491 1.378762 CCCTCCTTTTCCGCCAAGA 59.621 57.895 0.00 0.00 0.00 3.02
4174 5492 0.251165 CCCTCCTTTTCCGCCAAGAA 60.251 55.000 0.00 0.00 0.00 2.52
4175 5493 1.616159 CCTCCTTTTCCGCCAAGAAA 58.384 50.000 0.00 0.00 33.98 2.52
4176 5494 1.960689 CCTCCTTTTCCGCCAAGAAAA 59.039 47.619 4.47 4.47 42.07 2.29
4177 5495 2.288213 CCTCCTTTTCCGCCAAGAAAAC 60.288 50.000 0.00 0.00 40.04 2.43
4178 5496 2.360801 CTCCTTTTCCGCCAAGAAAACA 59.639 45.455 0.00 0.00 40.04 2.83
4179 5497 2.100087 TCCTTTTCCGCCAAGAAAACAC 59.900 45.455 0.00 0.00 40.04 3.32
4180 5498 2.469826 CTTTTCCGCCAAGAAAACACC 58.530 47.619 0.00 0.00 40.04 4.16
4181 5499 0.747852 TTTCCGCCAAGAAAACACCC 59.252 50.000 0.00 0.00 32.90 4.61
4182 5500 1.110518 TTCCGCCAAGAAAACACCCC 61.111 55.000 0.00 0.00 0.00 4.95
4183 5501 2.570284 CCGCCAAGAAAACACCCCC 61.570 63.158 0.00 0.00 0.00 5.40
4184 5502 1.530655 CGCCAAGAAAACACCCCCT 60.531 57.895 0.00 0.00 0.00 4.79
4185 5503 1.524008 CGCCAAGAAAACACCCCCTC 61.524 60.000 0.00 0.00 0.00 4.30
4186 5504 1.185618 GCCAAGAAAACACCCCCTCC 61.186 60.000 0.00 0.00 0.00 4.30
4187 5505 0.187361 CCAAGAAAACACCCCCTCCA 59.813 55.000 0.00 0.00 0.00 3.86
4188 5506 1.203174 CCAAGAAAACACCCCCTCCAT 60.203 52.381 0.00 0.00 0.00 3.41
4189 5507 2.042433 CCAAGAAAACACCCCCTCCATA 59.958 50.000 0.00 0.00 0.00 2.74
4190 5508 3.501385 CCAAGAAAACACCCCCTCCATAA 60.501 47.826 0.00 0.00 0.00 1.90
4191 5509 3.739401 AGAAAACACCCCCTCCATAAG 57.261 47.619 0.00 0.00 0.00 1.73
4192 5510 3.265489 AGAAAACACCCCCTCCATAAGA 58.735 45.455 0.00 0.00 0.00 2.10
4193 5511 3.858638 AGAAAACACCCCCTCCATAAGAT 59.141 43.478 0.00 0.00 0.00 2.40
4194 5512 3.669939 AAACACCCCCTCCATAAGATG 57.330 47.619 0.00 0.00 0.00 2.90
4195 5513 2.286935 ACACCCCCTCCATAAGATGT 57.713 50.000 0.00 0.00 0.00 3.06
4196 5514 2.573463 ACACCCCCTCCATAAGATGTT 58.427 47.619 0.00 0.00 0.00 2.71
4197 5515 2.509964 ACACCCCCTCCATAAGATGTTC 59.490 50.000 0.00 0.00 0.00 3.18
4198 5516 2.780010 CACCCCCTCCATAAGATGTTCT 59.220 50.000 0.00 0.00 0.00 3.01
4199 5517 3.973973 CACCCCCTCCATAAGATGTTCTA 59.026 47.826 0.00 0.00 0.00 2.10
4200 5518 4.412199 CACCCCCTCCATAAGATGTTCTAA 59.588 45.833 0.00 0.00 0.00 2.10
4201 5519 5.043762 ACCCCCTCCATAAGATGTTCTAAA 58.956 41.667 0.00 0.00 0.00 1.85
4202 5520 5.494706 ACCCCCTCCATAAGATGTTCTAAAA 59.505 40.000 0.00 0.00 0.00 1.52
4203 5521 6.011096 ACCCCCTCCATAAGATGTTCTAAAAA 60.011 38.462 0.00 0.00 0.00 1.94
4257 5763 2.747446 AGTGTGTTTGTTCACTCGCTTT 59.253 40.909 0.00 0.00 40.28 3.51
4276 5782 5.306394 GCTTTAGTCTTTGTGTACTCCCTT 58.694 41.667 0.00 0.00 0.00 3.95
4281 5787 3.739810 GTCTTTGTGTACTCCCTTCGTTC 59.260 47.826 0.00 0.00 0.00 3.95
4282 5788 3.640029 TCTTTGTGTACTCCCTTCGTTCT 59.360 43.478 0.00 0.00 0.00 3.01
4286 5792 5.534207 TGTGTACTCCCTTCGTTCTTAAA 57.466 39.130 0.00 0.00 0.00 1.52
4287 5793 6.105397 TGTGTACTCCCTTCGTTCTTAAAT 57.895 37.500 0.00 0.00 0.00 1.40
4288 5794 7.230849 TGTGTACTCCCTTCGTTCTTAAATA 57.769 36.000 0.00 0.00 0.00 1.40
4289 5795 7.092716 TGTGTACTCCCTTCGTTCTTAAATAC 58.907 38.462 0.00 0.00 0.00 1.89
4290 5796 7.039504 TGTGTACTCCCTTCGTTCTTAAATACT 60.040 37.037 0.00 0.00 0.00 2.12
4382 5920 5.699839 AGTTTCATTCATTTTGCTCCGTAC 58.300 37.500 0.00 0.00 0.00 3.67
4395 5933 6.375945 TTGCTCCGTACGTAGTTCATATTA 57.624 37.500 15.21 0.00 37.78 0.98
4478 6021 2.531771 TGTAACAGTGATCGGAGGGAA 58.468 47.619 0.00 0.00 0.00 3.97
4479 6022 3.104512 TGTAACAGTGATCGGAGGGAAT 58.895 45.455 0.00 0.00 0.00 3.01
4681 6230 2.915659 ACGTCTTCAGCCCGTCCA 60.916 61.111 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.376075 TGAAAAGTTCTTAAAATGTGCATTCAA 57.624 25.926 0.00 0.00 0.00 2.69
3 4 8.939201 TGAAAAGTTCTTAAAATGTGCATTCA 57.061 26.923 0.00 0.00 0.00 2.57
7 8 9.160496 ACAATTGAAAAGTTCTTAAAATGTGCA 57.840 25.926 13.59 0.00 0.00 4.57
81 82 6.583050 ACTTCGTTTTTCGTGTCAAATTTTGA 59.417 30.769 7.74 7.74 40.80 2.69
82 83 6.672439 CACTTCGTTTTTCGTGTCAAATTTTG 59.328 34.615 2.59 2.59 40.80 2.44
83 84 6.183360 CCACTTCGTTTTTCGTGTCAAATTTT 60.183 34.615 0.00 0.00 40.80 1.82
84 85 5.287513 CCACTTCGTTTTTCGTGTCAAATTT 59.712 36.000 0.00 0.00 40.80 1.82
85 86 4.796312 CCACTTCGTTTTTCGTGTCAAATT 59.204 37.500 0.00 0.00 40.80 1.82
86 87 4.142556 ACCACTTCGTTTTTCGTGTCAAAT 60.143 37.500 0.00 0.00 40.80 2.32
87 88 3.188873 ACCACTTCGTTTTTCGTGTCAAA 59.811 39.130 0.00 0.00 40.80 2.69
88 89 2.743126 ACCACTTCGTTTTTCGTGTCAA 59.257 40.909 0.00 0.00 40.80 3.18
89 90 2.348660 ACCACTTCGTTTTTCGTGTCA 58.651 42.857 0.00 0.00 40.80 3.58
90 91 3.394313 AACCACTTCGTTTTTCGTGTC 57.606 42.857 0.00 0.00 40.80 3.67
91 92 3.835378 AAACCACTTCGTTTTTCGTGT 57.165 38.095 0.00 0.00 40.80 4.49
92 93 3.915569 ACAAAACCACTTCGTTTTTCGTG 59.084 39.130 0.00 0.00 41.95 4.35
93 94 4.163458 ACAAAACCACTTCGTTTTTCGT 57.837 36.364 0.00 0.00 41.95 3.85
94 95 9.596677 TTATATACAAAACCACTTCGTTTTTCG 57.403 29.630 0.00 0.00 41.95 3.46
162 163 9.570488 GTTCTCGTAAAAATGTACTCAGTCTAT 57.430 33.333 0.00 0.00 0.00 1.98
163 164 8.025445 GGTTCTCGTAAAAATGTACTCAGTCTA 58.975 37.037 0.00 0.00 0.00 2.59
164 165 6.867293 GGTTCTCGTAAAAATGTACTCAGTCT 59.133 38.462 0.00 0.00 0.00 3.24
165 166 6.643770 TGGTTCTCGTAAAAATGTACTCAGTC 59.356 38.462 0.00 0.00 0.00 3.51
166 167 6.423001 GTGGTTCTCGTAAAAATGTACTCAGT 59.577 38.462 0.00 0.00 0.00 3.41
167 168 6.645415 AGTGGTTCTCGTAAAAATGTACTCAG 59.355 38.462 0.00 0.00 0.00 3.35
168 169 6.518493 AGTGGTTCTCGTAAAAATGTACTCA 58.482 36.000 0.00 0.00 0.00 3.41
169 170 8.430828 GTTAGTGGTTCTCGTAAAAATGTACTC 58.569 37.037 0.00 0.00 0.00 2.59
170 171 7.386025 GGTTAGTGGTTCTCGTAAAAATGTACT 59.614 37.037 0.00 0.00 0.00 2.73
171 172 7.513132 GGTTAGTGGTTCTCGTAAAAATGTAC 58.487 38.462 0.00 0.00 0.00 2.90
172 173 6.365789 CGGTTAGTGGTTCTCGTAAAAATGTA 59.634 38.462 0.00 0.00 0.00 2.29
173 174 5.178067 CGGTTAGTGGTTCTCGTAAAAATGT 59.822 40.000 0.00 0.00 0.00 2.71
174 175 5.614760 CGGTTAGTGGTTCTCGTAAAAATG 58.385 41.667 0.00 0.00 0.00 2.32
175 176 4.152938 GCGGTTAGTGGTTCTCGTAAAAAT 59.847 41.667 0.00 0.00 0.00 1.82
176 177 3.494251 GCGGTTAGTGGTTCTCGTAAAAA 59.506 43.478 0.00 0.00 0.00 1.94
177 178 3.059166 GCGGTTAGTGGTTCTCGTAAAA 58.941 45.455 0.00 0.00 0.00 1.52
178 179 2.297033 AGCGGTTAGTGGTTCTCGTAAA 59.703 45.455 0.00 0.00 0.00 2.01
179 180 1.888512 AGCGGTTAGTGGTTCTCGTAA 59.111 47.619 0.00 0.00 0.00 3.18
180 181 1.470098 GAGCGGTTAGTGGTTCTCGTA 59.530 52.381 0.00 0.00 0.00 3.43
181 182 0.243095 GAGCGGTTAGTGGTTCTCGT 59.757 55.000 0.00 0.00 0.00 4.18
182 183 0.797249 CGAGCGGTTAGTGGTTCTCG 60.797 60.000 0.00 0.00 37.65 4.04
183 184 0.458025 CCGAGCGGTTAGTGGTTCTC 60.458 60.000 0.00 0.00 0.00 2.87
184 185 1.590147 CCGAGCGGTTAGTGGTTCT 59.410 57.895 0.00 0.00 0.00 3.01
185 186 4.180496 CCGAGCGGTTAGTGGTTC 57.820 61.111 0.00 0.00 0.00 3.62
213 214 6.038985 TGCTGTTTGATCACATTTCGAAAAA 58.961 32.000 15.66 0.00 0.00 1.94
214 215 5.586339 TGCTGTTTGATCACATTTCGAAAA 58.414 33.333 15.66 0.00 0.00 2.29
215 216 5.180367 TGCTGTTTGATCACATTTCGAAA 57.820 34.783 13.91 13.91 0.00 3.46
216 217 4.827304 TGCTGTTTGATCACATTTCGAA 57.173 36.364 0.00 0.00 0.00 3.71
217 218 4.827304 TTGCTGTTTGATCACATTTCGA 57.173 36.364 0.00 0.00 0.00 3.71
218 219 6.803320 ACTAATTGCTGTTTGATCACATTTCG 59.197 34.615 0.00 0.00 0.00 3.46
219 220 7.062605 CCACTAATTGCTGTTTGATCACATTTC 59.937 37.037 0.00 0.00 0.00 2.17
220 221 6.869913 CCACTAATTGCTGTTTGATCACATTT 59.130 34.615 0.00 0.00 0.00 2.32
221 222 6.015180 ACCACTAATTGCTGTTTGATCACATT 60.015 34.615 0.00 0.00 0.00 2.71
222 223 5.477984 ACCACTAATTGCTGTTTGATCACAT 59.522 36.000 0.00 0.00 0.00 3.21
223 224 4.826733 ACCACTAATTGCTGTTTGATCACA 59.173 37.500 0.00 0.00 0.00 3.58
224 225 5.376854 ACCACTAATTGCTGTTTGATCAC 57.623 39.130 0.00 0.00 0.00 3.06
225 226 5.769662 AGAACCACTAATTGCTGTTTGATCA 59.230 36.000 0.00 0.00 0.00 2.92
226 227 6.088824 CAGAACCACTAATTGCTGTTTGATC 58.911 40.000 0.00 0.00 0.00 2.92
227 228 5.536161 ACAGAACCACTAATTGCTGTTTGAT 59.464 36.000 0.00 0.00 33.19 2.57
228 229 4.887071 ACAGAACCACTAATTGCTGTTTGA 59.113 37.500 0.00 0.00 33.19 2.69
229 230 5.186996 ACAGAACCACTAATTGCTGTTTG 57.813 39.130 0.00 0.00 33.19 2.93
230 231 5.852282 AACAGAACCACTAATTGCTGTTT 57.148 34.783 0.00 0.00 42.07 2.83
231 232 6.952773 TTAACAGAACCACTAATTGCTGTT 57.047 33.333 0.00 0.00 45.34 3.16
232 233 6.952773 TTTAACAGAACCACTAATTGCTGT 57.047 33.333 0.00 0.00 38.14 4.40
233 234 8.816640 AAATTTAACAGAACCACTAATTGCTG 57.183 30.769 0.00 0.00 0.00 4.41
234 235 9.830975 AAAAATTTAACAGAACCACTAATTGCT 57.169 25.926 0.00 0.00 0.00 3.91
263 264 9.495572 AAAAATGTACAAAAAGGACTGTTTTCA 57.504 25.926 0.00 0.00 0.00 2.69
267 268 9.078753 CGTTAAAAATGTACAAAAAGGACTGTT 57.921 29.630 0.00 0.00 0.00 3.16
268 269 8.245491 ACGTTAAAAATGTACAAAAAGGACTGT 58.755 29.630 0.00 0.00 0.00 3.55
269 270 8.623310 ACGTTAAAAATGTACAAAAAGGACTG 57.377 30.769 0.00 0.00 0.00 3.51
270 271 9.642327 AAACGTTAAAAATGTACAAAAAGGACT 57.358 25.926 0.00 0.00 0.00 3.85
271 272 9.678247 CAAACGTTAAAAATGTACAAAAAGGAC 57.322 29.630 0.00 0.00 0.00 3.85
272 273 9.635520 TCAAACGTTAAAAATGTACAAAAAGGA 57.364 25.926 0.00 0.00 0.00 3.36
273 274 9.894439 CTCAAACGTTAAAAATGTACAAAAAGG 57.106 29.630 0.00 0.00 0.00 3.11
276 277 8.861101 CCACTCAAACGTTAAAAATGTACAAAA 58.139 29.630 0.00 0.00 0.00 2.44
277 278 8.027771 ACCACTCAAACGTTAAAAATGTACAAA 58.972 29.630 0.00 0.00 0.00 2.83
278 279 7.536855 ACCACTCAAACGTTAAAAATGTACAA 58.463 30.769 0.00 0.00 0.00 2.41
279 280 7.086230 ACCACTCAAACGTTAAAAATGTACA 57.914 32.000 0.00 0.00 0.00 2.90
280 281 7.974243 AACCACTCAAACGTTAAAAATGTAC 57.026 32.000 0.00 0.00 0.00 2.90
281 282 8.983307 AAAACCACTCAAACGTTAAAAATGTA 57.017 26.923 0.00 0.00 0.00 2.29
282 283 7.892778 AAAACCACTCAAACGTTAAAAATGT 57.107 28.000 0.00 0.00 0.00 2.71
283 284 8.536407 CCTAAAACCACTCAAACGTTAAAAATG 58.464 33.333 0.00 0.00 0.00 2.32
284 285 7.223193 GCCTAAAACCACTCAAACGTTAAAAAT 59.777 33.333 0.00 0.00 0.00 1.82
285 286 6.530887 GCCTAAAACCACTCAAACGTTAAAAA 59.469 34.615 0.00 0.00 0.00 1.94
286 287 6.035217 GCCTAAAACCACTCAAACGTTAAAA 58.965 36.000 0.00 0.00 0.00 1.52
287 288 5.450274 GGCCTAAAACCACTCAAACGTTAAA 60.450 40.000 0.00 0.00 0.00 1.52
288 289 4.036616 GGCCTAAAACCACTCAAACGTTAA 59.963 41.667 0.00 0.00 0.00 2.01
289 290 3.565063 GGCCTAAAACCACTCAAACGTTA 59.435 43.478 0.00 0.00 0.00 3.18
290 291 2.359848 GGCCTAAAACCACTCAAACGTT 59.640 45.455 0.00 0.00 0.00 3.99
291 292 1.951602 GGCCTAAAACCACTCAAACGT 59.048 47.619 0.00 0.00 0.00 3.99
292 293 1.268625 GGGCCTAAAACCACTCAAACG 59.731 52.381 0.84 0.00 0.00 3.60
293 294 2.312390 TGGGCCTAAAACCACTCAAAC 58.688 47.619 4.53 0.00 0.00 2.93
294 295 2.757894 TGGGCCTAAAACCACTCAAA 57.242 45.000 4.53 0.00 0.00 2.69
295 296 2.757894 TTGGGCCTAAAACCACTCAA 57.242 45.000 4.53 0.00 36.27 3.02
296 297 2.757894 TTTGGGCCTAAAACCACTCA 57.242 45.000 12.49 0.00 36.27 3.41
324 325 9.857957 ACCGTTTTCAGTAAAATTTTAACAGAA 57.142 25.926 12.14 12.65 36.96 3.02
333 334 9.642327 ACAAAAAGTACCGTTTTCAGTAAAATT 57.358 25.926 2.65 0.00 36.96 1.82
335 336 9.553418 GTACAAAAAGTACCGTTTTCAGTAAAA 57.447 29.630 2.65 0.00 45.94 1.52
364 365 5.658468 CCTAAAACCACCCAAACGTAAAAA 58.342 37.500 0.00 0.00 0.00 1.94
365 366 4.441217 GCCTAAAACCACCCAAACGTAAAA 60.441 41.667 0.00 0.00 0.00 1.52
366 367 3.067883 GCCTAAAACCACCCAAACGTAAA 59.932 43.478 0.00 0.00 0.00 2.01
367 368 2.622470 GCCTAAAACCACCCAAACGTAA 59.378 45.455 0.00 0.00 0.00 3.18
368 369 2.228925 GCCTAAAACCACCCAAACGTA 58.771 47.619 0.00 0.00 0.00 3.57
369 370 1.034356 GCCTAAAACCACCCAAACGT 58.966 50.000 0.00 0.00 0.00 3.99
370 371 1.033574 TGCCTAAAACCACCCAAACG 58.966 50.000 0.00 0.00 0.00 3.60
371 372 3.545366 TTTGCCTAAAACCACCCAAAC 57.455 42.857 0.00 0.00 0.00 2.93
372 373 4.455606 CAATTTGCCTAAAACCACCCAAA 58.544 39.130 0.00 0.00 0.00 3.28
373 374 3.745797 GCAATTTGCCTAAAACCACCCAA 60.746 43.478 10.34 0.00 37.42 4.12
374 375 2.224402 GCAATTTGCCTAAAACCACCCA 60.224 45.455 10.34 0.00 37.42 4.51
375 376 2.422597 GCAATTTGCCTAAAACCACCC 58.577 47.619 10.34 0.00 37.42 4.61
376 377 2.065512 CGCAATTTGCCTAAAACCACC 58.934 47.619 15.45 0.00 41.12 4.61
377 378 2.729360 GTCGCAATTTGCCTAAAACCAC 59.271 45.455 15.45 0.00 41.12 4.16
378 379 2.605823 CGTCGCAATTTGCCTAAAACCA 60.606 45.455 15.45 0.00 41.12 3.67
379 380 1.982913 CGTCGCAATTTGCCTAAAACC 59.017 47.619 15.45 0.00 41.12 3.27
380 381 2.657184 ACGTCGCAATTTGCCTAAAAC 58.343 42.857 15.45 5.81 41.12 2.43
381 382 4.485024 TTACGTCGCAATTTGCCTAAAA 57.515 36.364 15.45 1.95 41.12 1.52
382 383 4.688511 ATTACGTCGCAATTTGCCTAAA 57.311 36.364 15.45 4.21 41.12 1.85
383 384 4.083217 ACAATTACGTCGCAATTTGCCTAA 60.083 37.500 15.45 6.81 41.12 2.69
384 385 3.437395 ACAATTACGTCGCAATTTGCCTA 59.563 39.130 15.45 1.53 41.12 3.93
385 386 2.227865 ACAATTACGTCGCAATTTGCCT 59.772 40.909 15.45 0.00 41.12 4.75
386 387 2.341168 CACAATTACGTCGCAATTTGCC 59.659 45.455 15.45 1.92 41.12 4.52
387 388 2.341168 CCACAATTACGTCGCAATTTGC 59.659 45.455 11.42 11.42 40.69 3.68
388 389 3.360463 CACCACAATTACGTCGCAATTTG 59.640 43.478 0.54 4.15 0.00 2.32
389 390 3.251245 TCACCACAATTACGTCGCAATTT 59.749 39.130 0.54 0.00 0.00 1.82
390 391 2.809119 TCACCACAATTACGTCGCAATT 59.191 40.909 0.00 0.00 0.00 2.32
391 392 2.415168 CTCACCACAATTACGTCGCAAT 59.585 45.455 0.00 0.00 0.00 3.56
392 393 1.795872 CTCACCACAATTACGTCGCAA 59.204 47.619 0.00 0.00 0.00 4.85
393 394 1.269883 ACTCACCACAATTACGTCGCA 60.270 47.619 0.00 0.00 0.00 5.10
394 395 1.425412 ACTCACCACAATTACGTCGC 58.575 50.000 0.00 0.00 0.00 5.19
395 396 4.461992 AAAACTCACCACAATTACGTCG 57.538 40.909 0.00 0.00 0.00 5.12
415 416 4.154556 CGGCGAGGGACTAAATTACAAAAA 59.845 41.667 0.00 0.00 41.55 1.94
416 417 3.685756 CGGCGAGGGACTAAATTACAAAA 59.314 43.478 0.00 0.00 41.55 2.44
417 418 3.055963 TCGGCGAGGGACTAAATTACAAA 60.056 43.478 4.99 0.00 41.55 2.83
418 419 2.496871 TCGGCGAGGGACTAAATTACAA 59.503 45.455 4.99 0.00 41.55 2.41
419 420 2.101783 TCGGCGAGGGACTAAATTACA 58.898 47.619 4.99 0.00 41.55 2.41
420 421 2.877043 TCGGCGAGGGACTAAATTAC 57.123 50.000 4.99 0.00 41.55 1.89
421 422 2.482490 GCTTCGGCGAGGGACTAAATTA 60.482 50.000 20.82 0.00 41.55 1.40
422 423 1.742750 GCTTCGGCGAGGGACTAAATT 60.743 52.381 20.82 0.00 41.55 1.82
423 424 0.179081 GCTTCGGCGAGGGACTAAAT 60.179 55.000 20.82 0.00 41.55 1.40
424 425 1.217244 GCTTCGGCGAGGGACTAAA 59.783 57.895 20.82 0.00 41.55 1.85
425 426 1.945354 CTGCTTCGGCGAGGGACTAA 61.945 60.000 20.82 0.00 45.37 2.24
426 427 2.361992 TGCTTCGGCGAGGGACTA 60.362 61.111 20.82 0.00 45.37 2.59
427 428 3.764466 CTGCTTCGGCGAGGGACT 61.764 66.667 20.82 0.00 45.37 3.85
428 429 4.821589 CCTGCTTCGGCGAGGGAC 62.822 72.222 20.82 5.44 45.37 4.46
436 437 3.391665 AATCCGAGCCCTGCTTCGG 62.392 63.158 15.90 15.90 44.37 4.30
437 438 2.176273 CAATCCGAGCCCTGCTTCG 61.176 63.158 0.00 0.00 39.88 3.79
438 439 1.821332 CCAATCCGAGCCCTGCTTC 60.821 63.158 0.00 0.00 39.88 3.86
439 440 2.273449 CCAATCCGAGCCCTGCTT 59.727 61.111 0.00 0.00 39.88 3.91
440 441 3.801997 CCCAATCCGAGCCCTGCT 61.802 66.667 0.00 0.00 43.88 4.24
441 442 4.883354 CCCCAATCCGAGCCCTGC 62.883 72.222 0.00 0.00 0.00 4.85
442 443 4.195334 CCCCCAATCCGAGCCCTG 62.195 72.222 0.00 0.00 0.00 4.45
443 444 4.760220 ACCCCCAATCCGAGCCCT 62.760 66.667 0.00 0.00 0.00 5.19
444 445 3.296842 AAACCCCCAATCCGAGCCC 62.297 63.158 0.00 0.00 0.00 5.19
445 446 2.052104 CAAACCCCCAATCCGAGCC 61.052 63.158 0.00 0.00 0.00 4.70
446 447 0.610785 TTCAAACCCCCAATCCGAGC 60.611 55.000 0.00 0.00 0.00 5.03
447 448 2.024414 GATTCAAACCCCCAATCCGAG 58.976 52.381 0.00 0.00 0.00 4.63
448 449 1.356059 TGATTCAAACCCCCAATCCGA 59.644 47.619 0.00 0.00 0.00 4.55
449 450 1.846007 TGATTCAAACCCCCAATCCG 58.154 50.000 0.00 0.00 0.00 4.18
450 451 4.842531 AAATGATTCAAACCCCCAATCC 57.157 40.909 0.00 0.00 0.00 3.01
451 452 5.396324 GGGTAAATGATTCAAACCCCCAATC 60.396 44.000 18.11 0.00 43.42 2.67
452 453 4.473196 GGGTAAATGATTCAAACCCCCAAT 59.527 41.667 18.11 0.00 43.42 3.16
453 454 3.841255 GGGTAAATGATTCAAACCCCCAA 59.159 43.478 18.11 0.00 43.42 4.12
454 455 3.445987 GGGTAAATGATTCAAACCCCCA 58.554 45.455 18.11 0.00 43.42 4.96
478 479 9.095700 GGGTAAATTATCAAGCCCCATATAAAA 57.904 33.333 0.00 0.00 0.00 1.52
479 480 8.658840 GGGTAAATTATCAAGCCCCATATAAA 57.341 34.615 0.00 0.00 0.00 1.40
488 489 6.549736 ACATAACTGGGGTAAATTATCAAGCC 59.450 38.462 0.00 0.00 0.00 4.35
489 490 7.284489 TGACATAACTGGGGTAAATTATCAAGC 59.716 37.037 0.00 0.00 0.00 4.01
490 491 8.746052 TGACATAACTGGGGTAAATTATCAAG 57.254 34.615 0.00 0.00 0.00 3.02
491 492 8.333235 ACTGACATAACTGGGGTAAATTATCAA 58.667 33.333 0.00 0.00 0.00 2.57
492 493 7.773224 CACTGACATAACTGGGGTAAATTATCA 59.227 37.037 0.00 0.00 0.00 2.15
493 494 7.228706 CCACTGACATAACTGGGGTAAATTATC 59.771 40.741 0.00 0.00 0.00 1.75
494 495 7.060421 CCACTGACATAACTGGGGTAAATTAT 58.940 38.462 0.00 0.00 0.00 1.28
495 496 6.215841 TCCACTGACATAACTGGGGTAAATTA 59.784 38.462 0.00 0.00 34.58 1.40
496 497 5.014755 TCCACTGACATAACTGGGGTAAATT 59.985 40.000 0.00 0.00 34.58 1.82
497 498 4.538490 TCCACTGACATAACTGGGGTAAAT 59.462 41.667 0.00 0.00 34.58 1.40
498 499 3.911260 TCCACTGACATAACTGGGGTAAA 59.089 43.478 0.00 0.00 34.58 2.01
499 500 3.522759 TCCACTGACATAACTGGGGTAA 58.477 45.455 0.00 0.00 34.58 2.85
500 501 3.193395 TCCACTGACATAACTGGGGTA 57.807 47.619 0.00 0.00 34.58 3.69
501 502 2.038863 TCCACTGACATAACTGGGGT 57.961 50.000 0.00 0.00 34.58 4.95
502 503 3.711704 ACTATCCACTGACATAACTGGGG 59.288 47.826 0.00 0.00 34.32 4.96
503 504 4.443457 CCACTATCCACTGACATAACTGGG 60.443 50.000 0.00 0.00 0.00 4.45
504 505 4.697514 CCACTATCCACTGACATAACTGG 58.302 47.826 0.00 0.00 0.00 4.00
505 506 4.122776 GCCACTATCCACTGACATAACTG 58.877 47.826 0.00 0.00 0.00 3.16
506 507 3.134804 GGCCACTATCCACTGACATAACT 59.865 47.826 0.00 0.00 0.00 2.24
507 508 3.467803 GGCCACTATCCACTGACATAAC 58.532 50.000 0.00 0.00 0.00 1.89
508 509 2.438021 GGGCCACTATCCACTGACATAA 59.562 50.000 4.39 0.00 0.00 1.90
509 510 2.047061 GGGCCACTATCCACTGACATA 58.953 52.381 4.39 0.00 0.00 2.29
510 511 0.839946 GGGCCACTATCCACTGACAT 59.160 55.000 4.39 0.00 0.00 3.06
529 530 0.976073 ATACTGACGGGTGGGTCCAG 60.976 60.000 0.00 0.00 36.07 3.86
545 546 6.937436 ACTTTGATAATTTGTCCCCGATAC 57.063 37.500 0.00 0.00 0.00 2.24
547 548 7.948034 TTAACTTTGATAATTTGTCCCCGAT 57.052 32.000 0.00 0.00 0.00 4.18
554 555 8.200792 TGCACCACTTTAACTTTGATAATTTGT 58.799 29.630 0.00 0.00 0.00 2.83
811 813 0.972983 ACACCTGACGAGGAGGATGG 60.973 60.000 0.00 0.00 42.93 3.51
1050 1052 5.789521 AGGAAGAAAGACAGAAGTAGAAGC 58.210 41.667 0.00 0.00 0.00 3.86
1066 1068 6.212589 ACAACAAAAGGGAAAAGAAGGAAGAA 59.787 34.615 0.00 0.00 0.00 2.52
1175 1313 9.220767 GAGGTCAAATTCAGTCAAACTACTAAT 57.779 33.333 0.00 0.00 0.00 1.73
1552 2829 2.826128 AGCAGAACAAGGTAGTCATCGA 59.174 45.455 0.00 0.00 0.00 3.59
1553 2830 3.119316 AGAGCAGAACAAGGTAGTCATCG 60.119 47.826 0.00 0.00 0.00 3.84
1779 3057 7.103641 ACTAAATCAGCGACTCTTATTTTGGA 58.896 34.615 0.00 0.00 32.53 3.53
1980 3258 2.288886 GGAACTAGATGATACCCCGCAC 60.289 54.545 0.00 0.00 0.00 5.34
2121 3399 3.118775 AGCGGAGTGTTGCATACATCTTA 60.119 43.478 5.26 0.00 39.39 2.10
2130 3408 0.592637 CAATCAAGCGGAGTGTTGCA 59.407 50.000 1.45 0.00 36.86 4.08
2431 3709 5.373812 TTCTGACCCTTTTTCTTGAGAGT 57.626 39.130 0.00 0.00 0.00 3.24
2687 3966 9.706996 CAAAATTAACAATTCGATACAACAACG 57.293 29.630 0.00 0.00 0.00 4.10
2707 3986 7.346751 AGTTACACATCCAGACAACAAAATT 57.653 32.000 0.00 0.00 0.00 1.82
2933 4212 6.566141 TCACCTTGTGCAATCAATCATATTG 58.434 36.000 0.00 0.00 37.39 1.90
2934 4213 6.778834 TCACCTTGTGCAATCAATCATATT 57.221 33.333 0.00 0.00 32.98 1.28
2939 4218 4.707030 TCATCACCTTGTGCAATCAATC 57.293 40.909 0.00 0.00 32.98 2.67
2985 4264 3.370846 CCTTGCCCATGACATCAAGTAGA 60.371 47.826 12.07 0.00 35.42 2.59
3036 4315 7.023575 CAGCACGCAACTATTTTTCTTATTCT 58.976 34.615 0.00 0.00 0.00 2.40
3048 4327 4.655762 TCTCTTATCAGCACGCAACTAT 57.344 40.909 0.00 0.00 0.00 2.12
3135 4414 0.250467 ACCACGAGCTTCATTGCTGT 60.250 50.000 0.00 0.00 44.17 4.40
3350 4629 7.811117 TGTTGCAGGTTACTATACTTGTTTT 57.189 32.000 0.00 0.00 0.00 2.43
3362 4641 4.065088 TCTCTTGACATGTTGCAGGTTAC 58.935 43.478 0.00 0.00 0.00 2.50
3373 4657 5.914085 AGACGAAAAACTCTCTTGACATG 57.086 39.130 0.00 0.00 0.00 3.21
3392 4676 0.321653 CAGTGCACCCTGGGTTAGAC 60.322 60.000 17.76 12.78 31.02 2.59
3426 4710 5.039333 GCATTGATAGCACCTTGTGAAATC 58.961 41.667 0.00 1.15 35.23 2.17
3559 4843 3.745975 CAGATTAAGACGAGGTGCAACAA 59.254 43.478 3.64 0.00 39.98 2.83
3691 4976 3.577313 GCGAGGCCCAGCGATTTC 61.577 66.667 13.66 0.00 0.00 2.17
3763 5048 6.314896 GCTGAAGAAACAATATCTAGTGCTGT 59.685 38.462 0.00 0.00 0.00 4.40
3913 5231 0.544120 TTCCCCCTTTGCATGGGTTC 60.544 55.000 19.92 0.00 43.09 3.62
3964 5282 1.872952 TGACTGCGATGACCAAACTTG 59.127 47.619 0.00 0.00 0.00 3.16
3974 5292 5.277202 CCATTTCTAACATCTGACTGCGATG 60.277 44.000 0.00 0.00 42.97 3.84
4032 5350 3.251571 GTCACGGTTGGTCAGATAGTTC 58.748 50.000 0.00 0.00 0.00 3.01
4077 5395 2.437002 ACGCACACACCGTTGGTT 60.437 55.556 0.00 0.00 34.96 3.67
4079 5397 3.199190 ACACGCACACACCGTTGG 61.199 61.111 0.00 0.00 36.69 3.77
4091 5409 1.785768 TACACACCACATACACACGC 58.214 50.000 0.00 0.00 0.00 5.34
4092 5410 3.122780 CACATACACACCACATACACACG 59.877 47.826 0.00 0.00 0.00 4.49
4104 5422 7.693951 GCTTCAAAGACATATTCACATACACAC 59.306 37.037 0.00 0.00 0.00 3.82
4114 5432 6.808704 GGAACCAAAGCTTCAAAGACATATTC 59.191 38.462 0.00 0.00 0.00 1.75
4147 5465 2.169978 GCGGAAAAGGAGGGTGTAGTAT 59.830 50.000 0.00 0.00 0.00 2.12
4148 5466 1.551883 GCGGAAAAGGAGGGTGTAGTA 59.448 52.381 0.00 0.00 0.00 1.82
4149 5467 0.323957 GCGGAAAAGGAGGGTGTAGT 59.676 55.000 0.00 0.00 0.00 2.73
4150 5468 0.392595 GGCGGAAAAGGAGGGTGTAG 60.393 60.000 0.00 0.00 0.00 2.74
4151 5469 1.128809 TGGCGGAAAAGGAGGGTGTA 61.129 55.000 0.00 0.00 0.00 2.90
4152 5470 2.002018 TTGGCGGAAAAGGAGGGTGT 62.002 55.000 0.00 0.00 0.00 4.16
4153 5471 1.228429 TTGGCGGAAAAGGAGGGTG 60.228 57.895 0.00 0.00 0.00 4.61
4154 5472 1.074951 CTTGGCGGAAAAGGAGGGT 59.925 57.895 0.00 0.00 0.00 4.34
4155 5473 0.251165 TTCTTGGCGGAAAAGGAGGG 60.251 55.000 0.00 0.00 0.00 4.30
4156 5474 1.616159 TTTCTTGGCGGAAAAGGAGG 58.384 50.000 3.54 0.00 33.04 4.30
4157 5475 2.360801 TGTTTTCTTGGCGGAAAAGGAG 59.639 45.455 15.15 0.00 43.12 3.69
4158 5476 2.100087 GTGTTTTCTTGGCGGAAAAGGA 59.900 45.455 15.15 6.01 43.12 3.36
4159 5477 2.469826 GTGTTTTCTTGGCGGAAAAGG 58.530 47.619 15.15 0.00 43.12 3.11
4160 5478 2.469826 GGTGTTTTCTTGGCGGAAAAG 58.530 47.619 15.15 0.00 43.12 2.27
4161 5479 1.137282 GGGTGTTTTCTTGGCGGAAAA 59.863 47.619 12.09 12.09 41.17 2.29
4162 5480 0.747852 GGGTGTTTTCTTGGCGGAAA 59.252 50.000 2.13 2.13 33.98 3.13
4163 5481 1.110518 GGGGTGTTTTCTTGGCGGAA 61.111 55.000 0.00 0.00 0.00 4.30
4164 5482 1.529713 GGGGTGTTTTCTTGGCGGA 60.530 57.895 0.00 0.00 0.00 5.54
4165 5483 2.570284 GGGGGTGTTTTCTTGGCGG 61.570 63.158 0.00 0.00 0.00 6.13
4166 5484 1.524008 GAGGGGGTGTTTTCTTGGCG 61.524 60.000 0.00 0.00 0.00 5.69
4167 5485 1.185618 GGAGGGGGTGTTTTCTTGGC 61.186 60.000 0.00 0.00 0.00 4.52
4168 5486 0.187361 TGGAGGGGGTGTTTTCTTGG 59.813 55.000 0.00 0.00 0.00 3.61
4169 5487 2.309136 ATGGAGGGGGTGTTTTCTTG 57.691 50.000 0.00 0.00 0.00 3.02
4170 5488 3.660669 TCTTATGGAGGGGGTGTTTTCTT 59.339 43.478 0.00 0.00 0.00 2.52
4171 5489 3.265489 TCTTATGGAGGGGGTGTTTTCT 58.735 45.455 0.00 0.00 0.00 2.52
4172 5490 3.732048 TCTTATGGAGGGGGTGTTTTC 57.268 47.619 0.00 0.00 0.00 2.29
4173 5491 3.336694 ACATCTTATGGAGGGGGTGTTTT 59.663 43.478 0.00 0.00 33.60 2.43
4174 5492 2.926329 ACATCTTATGGAGGGGGTGTTT 59.074 45.455 0.00 0.00 33.60 2.83
4175 5493 2.573463 ACATCTTATGGAGGGGGTGTT 58.427 47.619 0.00 0.00 33.60 3.32
4176 5494 2.286935 ACATCTTATGGAGGGGGTGT 57.713 50.000 0.00 0.00 33.60 4.16
4177 5495 2.780010 AGAACATCTTATGGAGGGGGTG 59.220 50.000 0.00 0.00 33.60 4.61
4178 5496 3.151542 AGAACATCTTATGGAGGGGGT 57.848 47.619 0.00 0.00 33.60 4.95
4179 5497 5.646692 TTTAGAACATCTTATGGAGGGGG 57.353 43.478 0.00 0.00 33.60 5.40
4204 5522 9.452065 GCGTGTATATACATCTGATTCGATTAT 57.548 33.333 18.27 0.00 38.63 1.28
4205 5523 8.455682 TGCGTGTATATACATCTGATTCGATTA 58.544 33.333 18.27 4.06 38.63 1.75
4206 5524 7.312899 TGCGTGTATATACATCTGATTCGATT 58.687 34.615 18.27 0.00 38.63 3.34
4207 5525 6.852664 TGCGTGTATATACATCTGATTCGAT 58.147 36.000 18.27 0.00 38.63 3.59
4208 5526 6.249035 TGCGTGTATATACATCTGATTCGA 57.751 37.500 18.27 4.10 38.63 3.71
4209 5527 6.927933 TTGCGTGTATATACATCTGATTCG 57.072 37.500 18.27 15.10 38.63 3.34
4212 5530 9.929180 ACTAAATTGCGTGTATATACATCTGAT 57.071 29.630 18.27 8.44 38.63 2.90
4213 5531 9.191995 CACTAAATTGCGTGTATATACATCTGA 57.808 33.333 18.27 6.63 38.63 3.27
4214 5532 8.978539 ACACTAAATTGCGTGTATATACATCTG 58.021 33.333 18.27 12.27 42.14 2.90
4215 5533 8.978539 CACACTAAATTGCGTGTATATACATCT 58.021 33.333 18.27 0.29 42.05 2.90
4216 5534 8.761497 ACACACTAAATTGCGTGTATATACATC 58.239 33.333 18.27 13.35 42.05 3.06
4217 5535 8.657074 ACACACTAAATTGCGTGTATATACAT 57.343 30.769 18.27 3.74 42.05 2.29
4218 5536 8.481974 AACACACTAAATTGCGTGTATATACA 57.518 30.769 11.62 11.62 42.05 2.29
4226 5732 4.795795 TGAACAAACACACTAAATTGCGTG 59.204 37.500 5.98 5.98 37.18 5.34
4229 5735 5.171337 CGAGTGAACAAACACACTAAATTGC 59.829 40.000 0.00 0.00 45.54 3.56
4237 5743 2.825086 AAGCGAGTGAACAAACACAC 57.175 45.000 0.00 0.00 42.45 3.82
4257 5763 4.147321 ACGAAGGGAGTACACAAAGACTA 58.853 43.478 0.00 0.00 0.00 2.59
4353 5891 7.147976 GGAGCAAAATGAATGAAACTACACTT 58.852 34.615 0.00 0.00 0.00 3.16
4361 5899 4.214545 ACGTACGGAGCAAAATGAATGAAA 59.785 37.500 21.06 0.00 0.00 2.69
4501 6044 1.384409 CGTACGTTCTTTGTGCCTACG 59.616 52.381 7.22 0.00 38.14 3.51
4541 6090 1.450312 GCCCTCGTCACCCTCATTG 60.450 63.158 0.00 0.00 0.00 2.82
4596 6145 3.566853 TAGTACTCGTCGGCGGCG 61.567 66.667 29.88 29.88 38.89 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.