Multiple sequence alignment - TraesCS3A01G204200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G204200 chr3A 100.000 5083 0 0 1 5083 356082241 356087323 0.000000e+00 9387.0
1 TraesCS3A01G204200 chr3D 95.933 2041 57 6 931 2967 272933267 272935285 0.000000e+00 3286.0
2 TraesCS3A01G204200 chr3D 95.868 1089 22 7 3126 4202 272935284 272936361 0.000000e+00 1740.0
3 TraesCS3A01G204200 chr3D 86.593 910 73 14 4218 5083 272936345 272937249 0.000000e+00 959.0
4 TraesCS3A01G204200 chr3D 90.301 732 62 8 7 732 604796352 604795624 0.000000e+00 950.0
5 TraesCS3A01G204200 chr3D 89.627 723 67 7 7 724 578316298 578315579 0.000000e+00 913.0
6 TraesCS3A01G204200 chr3D 88.089 722 76 9 7 724 160797122 160797837 0.000000e+00 848.0
7 TraesCS3A01G204200 chr3D 87.500 368 41 5 2936 3299 540545477 540545111 2.190000e-113 420.0
8 TraesCS3A01G204200 chr3D 79.551 445 66 18 4618 5048 413654516 413654949 1.380000e-75 294.0
9 TraesCS3A01G204200 chr3D 81.017 295 47 7 4784 5077 48941780 48942066 5.120000e-55 226.0
10 TraesCS3A01G204200 chr3D 79.863 293 51 6 4784 5075 527142976 527142691 1.850000e-49 207.0
11 TraesCS3A01G204200 chr3D 80.709 254 43 4 4823 5076 367393476 367393723 5.190000e-45 193.0
12 TraesCS3A01G204200 chr3D 80.165 242 40 6 4836 5076 545796003 545795769 1.880000e-39 174.0
13 TraesCS3A01G204200 chr3B 97.607 1212 28 1 931 2141 361020895 361019684 0.000000e+00 2076.0
14 TraesCS3A01G204200 chr3B 95.884 826 32 2 2143 2967 361014302 361013478 0.000000e+00 1336.0
15 TraesCS3A01G204200 chr3B 93.667 900 27 10 3316 4202 361012799 361011917 0.000000e+00 1319.0
16 TraesCS3A01G204200 chr3B 87.405 524 42 8 4223 4746 361011928 361011429 9.490000e-162 580.0
17 TraesCS3A01G204200 chr3B 87.772 368 40 5 2936 3299 642967778 642967412 4.700000e-115 425.0
18 TraesCS3A01G204200 chr3B 86.667 90 12 0 2726 2815 823579232 823579321 3.240000e-17 100.0
19 TraesCS3A01G204200 chr3B 88.462 52 6 0 2878 2929 827401561 827401510 4.250000e-06 63.9
20 TraesCS3A01G204200 chr3B 88.462 52 6 0 2878 2929 830789240 830789291 4.250000e-06 63.9
21 TraesCS3A01G204200 chr7D 87.912 728 80 6 7 727 461896162 461895436 0.000000e+00 850.0
22 TraesCS3A01G204200 chr7D 89.011 91 10 0 2726 2816 249422598 249422508 4.160000e-21 113.0
23 TraesCS3A01G204200 chr7D 88.298 94 10 1 2721 2813 141359989 141360082 1.500000e-20 111.0
24 TraesCS3A01G204200 chr7D 88.235 68 7 1 2462 2528 546060936 546060869 4.220000e-11 80.5
25 TraesCS3A01G204200 chr7D 91.071 56 5 0 3298 3353 136405260 136405315 5.460000e-10 76.8
26 TraesCS3A01G204200 chr1D 88.089 722 79 7 7 724 97542595 97543313 0.000000e+00 850.0
27 TraesCS3A01G204200 chr1D 79.181 293 53 6 4784 5075 424929601 424929316 4.010000e-46 196.0
28 TraesCS3A01G204200 chr1D 74.830 294 66 6 4784 5076 351511541 351511255 5.340000e-25 126.0
29 TraesCS3A01G204200 chr1D 76.608 171 29 6 3259 3420 470863336 470863504 3.260000e-12 84.2
30 TraesCS3A01G204200 chr6D 87.825 731 77 11 7 731 58834363 58833639 0.000000e+00 846.0
31 TraesCS3A01G204200 chr6D 78.210 257 48 6 4820 5075 142144321 142144072 1.890000e-34 158.0
32 TraesCS3A01G204200 chr6D 78.992 238 42 6 4839 5075 428662985 428662755 6.810000e-34 156.0
33 TraesCS3A01G204200 chr6D 77.220 259 53 2 4789 5047 203754190 203753938 4.100000e-31 147.0
34 TraesCS3A01G204200 chr6D 74.161 298 65 7 4784 5076 457703461 457703171 4.160000e-21 113.0
35 TraesCS3A01G204200 chr6D 91.071 56 5 0 3299 3354 14796742 14796687 5.460000e-10 76.8
36 TraesCS3A01G204200 chr6D 95.349 43 2 0 2888 2930 262433956 262433998 9.130000e-08 69.4
37 TraesCS3A01G204200 chr6D 97.436 39 1 0 2891 2929 320006206 320006168 3.280000e-07 67.6
38 TraesCS3A01G204200 chr5D 87.084 751 86 10 1 745 548190480 548191225 0.000000e+00 839.0
39 TraesCS3A01G204200 chr5D 87.671 730 76 13 1 724 382341161 382341882 0.000000e+00 837.0
40 TraesCS3A01G204200 chr5D 78.157 293 56 6 4784 5075 251910543 251910828 4.040000e-41 180.0
41 TraesCS3A01G204200 chr5D 78.423 241 44 6 4836 5075 358215530 358215763 3.170000e-32 150.0
42 TraesCS3A01G204200 chr4D 87.231 744 82 10 1 737 359203578 359204315 0.000000e+00 835.0
43 TraesCS3A01G204200 chr4D 81.496 254 41 4 4823 5076 508546089 508545842 2.400000e-48 204.0
44 TraesCS3A01G204200 chr4D 92.857 56 4 0 3299 3354 299316782 299316727 1.170000e-11 82.4
45 TraesCS3A01G204200 chr4D 92.308 52 4 0 2878 2929 499547714 499547765 1.960000e-09 75.0
46 TraesCS3A01G204200 chr5B 88.410 371 35 7 2936 3299 159526631 159527000 1.680000e-119 440.0
47 TraesCS3A01G204200 chr5B 87.772 368 40 5 2936 3299 27167111 27166745 4.700000e-115 425.0
48 TraesCS3A01G204200 chr5B 87.228 368 42 5 2936 3299 396661872 396661506 1.020000e-111 414.0
49 TraesCS3A01G204200 chr5B 84.921 126 10 6 3352 3473 497321743 497321863 8.940000e-23 119.0
50 TraesCS3A01G204200 chr5B 88.235 68 7 1 2462 2528 189160326 189160259 4.220000e-11 80.5
51 TraesCS3A01G204200 chr5B 92.308 52 4 0 2878 2929 672116918 672116867 1.960000e-09 75.0
52 TraesCS3A01G204200 chr2B 87.371 388 39 8 2920 3303 13730074 13729693 2.170000e-118 436.0
53 TraesCS3A01G204200 chr2B 85.714 91 13 0 2724 2814 4941591 4941681 4.190000e-16 97.1
54 TraesCS3A01G204200 chr7B 88.011 367 39 5 2936 3299 397620845 397620481 3.640000e-116 429.0
55 TraesCS3A01G204200 chr7B 84.462 251 29 8 4830 5077 262688680 262688923 6.580000e-59 239.0
56 TraesCS3A01G204200 chr7B 78.571 294 55 4 4784 5076 715263488 715263774 2.420000e-43 187.0
57 TraesCS3A01G204200 chr7B 84.921 126 10 6 3352 3473 497767740 497767860 8.940000e-23 119.0
58 TraesCS3A01G204200 chr7B 85.714 77 10 1 2453 2528 71351640 71351716 4.220000e-11 80.5
59 TraesCS3A01G204200 chr2D 87.772 368 40 5 2936 3299 611504572 611504206 4.700000e-115 425.0
60 TraesCS3A01G204200 chr6B 87.500 360 45 0 2920 3279 54877278 54877637 2.830000e-112 416.0
61 TraesCS3A01G204200 chr6B 90.217 92 9 0 2726 2817 530560460 530560369 2.490000e-23 121.0
62 TraesCS3A01G204200 chr6B 91.304 69 6 0 4618 4686 527035775 527035707 1.510000e-15 95.3
63 TraesCS3A01G204200 chr6B 85.897 78 10 1 2452 2528 311147545 311147622 1.170000e-11 82.4
64 TraesCS3A01G204200 chr6B 83.333 84 13 1 2468 2550 33523118 33523035 5.460000e-10 76.8
65 TraesCS3A01G204200 chr6A 80.942 446 54 14 4619 5051 569995597 569995170 1.770000e-84 324.0
66 TraesCS3A01G204200 chr6A 94.301 193 9 1 738 930 577714632 577714822 1.380000e-75 294.0
67 TraesCS3A01G204200 chr6A 93.782 193 10 1 738 930 577697823 577698013 6.440000e-74 289.0
68 TraesCS3A01G204200 chr6A 93.264 193 11 1 738 930 577696528 577696338 3.000000e-72 283.0
69 TraesCS3A01G204200 chr6A 93.264 193 11 1 738 930 577714102 577713912 3.000000e-72 283.0
70 TraesCS3A01G204200 chr6A 91.371 197 13 3 737 933 508295892 508295700 3.020000e-67 267.0
71 TraesCS3A01G204200 chr6A 90.909 176 14 1 755 930 508297295 508297468 8.510000e-58 235.0
72 TraesCS3A01G204200 chr6A 84.444 90 12 2 2726 2814 472520702 472520790 2.520000e-13 87.9
73 TraesCS3A01G204200 chr6A 81.132 106 18 2 2424 2528 196825178 196825074 3.260000e-12 84.2
74 TraesCS3A01G204200 chr6A 90.164 61 5 1 3298 3357 563027894 563027834 1.520000e-10 78.7
75 TraesCS3A01G204200 chr1A 83.051 295 39 9 4784 5076 575571169 575570884 1.820000e-64 257.0
76 TraesCS3A01G204200 chr1A 82.432 296 41 9 4785 5078 557874728 557875014 1.090000e-61 248.0
77 TraesCS3A01G204200 chr1A 81.315 289 45 6 4789 5076 364030795 364030515 5.120000e-55 226.0
78 TraesCS3A01G204200 chr1A 81.343 268 42 6 4794 5060 132260035 132260295 1.430000e-50 211.0
79 TraesCS3A01G204200 chr1A 87.931 58 7 0 2872 2929 399432018 399432075 9.130000e-08 69.4
80 TraesCS3A01G204200 chr2A 83.835 266 37 4 4811 5076 164691727 164691986 1.090000e-61 248.0
81 TraesCS3A01G204200 chr2A 82.383 193 9 16 3300 3473 148597386 148597572 1.470000e-30 145.0
82 TraesCS3A01G204200 chr2A 91.071 56 5 0 3299 3354 21820165 21820220 5.460000e-10 76.8
83 TraesCS3A01G204200 chr5A 81.783 258 33 8 4823 5076 448538982 448538735 2.400000e-48 204.0
84 TraesCS3A01G204200 chr5A 80.435 92 18 0 3263 3354 328662937 328662846 2.540000e-08 71.3
85 TraesCS3A01G204200 chr1B 77.474 293 58 6 4784 5075 908598 908313 8.750000e-38 169.0
86 TraesCS3A01G204200 chr1B 78.491 265 49 6 4784 5047 62716935 62717192 3.150000e-37 167.0
87 TraesCS3A01G204200 chr1B 85.714 126 9 6 3352 3473 306028666 306028546 1.920000e-24 124.0
88 TraesCS3A01G204200 chr1B 84.921 126 10 6 3352 3473 651401086 651401206 8.940000e-23 119.0
89 TraesCS3A01G204200 chr4B 85.714 126 9 6 3352 3473 552189507 552189627 1.920000e-24 124.0
90 TraesCS3A01G204200 chr4B 84.921 126 10 6 3352 3473 124459887 124460007 8.940000e-23 119.0
91 TraesCS3A01G204200 chr7A 89.474 95 10 0 2723 2817 85209301 85209395 2.490000e-23 121.0
92 TraesCS3A01G204200 chr7A 89.706 68 6 1 2462 2528 46221230 46221163 9.070000e-13 86.1
93 TraesCS3A01G204200 chr4A 79.769 173 11 13 3300 3451 669193957 669193788 2.500000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G204200 chr3A 356082241 356087323 5082 False 9387.000000 9387 100.000000 1 5083 1 chr3A.!!$F1 5082
1 TraesCS3A01G204200 chr3D 272933267 272937249 3982 False 1995.000000 3286 92.798000 931 5083 3 chr3D.!!$F5 4152
2 TraesCS3A01G204200 chr3D 604795624 604796352 728 True 950.000000 950 90.301000 7 732 1 chr3D.!!$R5 725
3 TraesCS3A01G204200 chr3D 578315579 578316298 719 True 913.000000 913 89.627000 7 724 1 chr3D.!!$R4 717
4 TraesCS3A01G204200 chr3D 160797122 160797837 715 False 848.000000 848 88.089000 7 724 1 chr3D.!!$F2 717
5 TraesCS3A01G204200 chr3B 361019684 361020895 1211 True 2076.000000 2076 97.607000 931 2141 1 chr3B.!!$R1 1210
6 TraesCS3A01G204200 chr3B 361011429 361014302 2873 True 1078.333333 1336 92.318667 2143 4746 3 chr3B.!!$R4 2603
7 TraesCS3A01G204200 chr7D 461895436 461896162 726 True 850.000000 850 87.912000 7 727 1 chr7D.!!$R2 720
8 TraesCS3A01G204200 chr1D 97542595 97543313 718 False 850.000000 850 88.089000 7 724 1 chr1D.!!$F1 717
9 TraesCS3A01G204200 chr6D 58833639 58834363 724 True 846.000000 846 87.825000 7 731 1 chr6D.!!$R2 724
10 TraesCS3A01G204200 chr5D 548190480 548191225 745 False 839.000000 839 87.084000 1 745 1 chr5D.!!$F4 744
11 TraesCS3A01G204200 chr5D 382341161 382341882 721 False 837.000000 837 87.671000 1 724 1 chr5D.!!$F3 723
12 TraesCS3A01G204200 chr4D 359203578 359204315 737 False 835.000000 835 87.231000 1 737 1 chr4D.!!$F1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 855 0.036164 TTGCTATGTTCTGCCGGTGT 59.964 50.000 1.90 0.0 0.00 4.16 F
856 874 0.037590 TTTAGCCGTTGCCACTGGAT 59.962 50.000 0.00 0.1 38.69 3.41 F
895 913 0.038159 GTGTTGGACGTCCCTCTCTG 60.038 60.000 31.19 0.0 35.38 3.35 F
1086 1104 0.038166 ACACCCAAGGCATGTACCAG 59.962 55.000 0.00 0.0 0.00 4.00 F
1135 1153 0.040058 TGTGCTTGGATTCCAGCCAT 59.960 50.000 18.48 0.0 33.81 4.40 F
2899 2940 1.487558 GCCGGTCTTAATGGGGAGTAA 59.512 52.381 1.90 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 1918 2.428544 AACCACTGTTACCTGCAACA 57.571 45.000 0.0 0.0 36.94 3.33 R
2492 2514 3.438087 ACATTTGGATGCAGAGAAACTCG 59.562 43.478 0.0 0.0 36.72 4.18 R
2881 2922 3.899052 TGTTACTCCCCATTAAGACCG 57.101 47.619 0.0 0.0 0.00 4.79 R
3064 3105 1.842052 TGTGGACTACATACGGAGCA 58.158 50.000 0.0 0.0 33.42 4.26 R
3108 3149 8.488308 AAAGTACTACTCCCTCTGTTTCTAAA 57.512 34.615 0.0 0.0 0.00 1.85 R
4536 5102 0.174845 CTACATTTCGCCTCCGGTCA 59.825 55.000 0.0 0.0 34.56 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 94 2.969628 AAATCTGCCTCGACGAGATT 57.030 45.000 26.11 14.36 37.92 2.40
106 109 5.634020 CGACGAGATTTTCAAAACTAGACCT 59.366 40.000 0.00 0.00 0.00 3.85
131 136 7.747888 TCATGTTGATATGTTTCGACGAATTT 58.252 30.769 11.71 2.15 33.42 1.82
132 137 7.902917 TCATGTTGATATGTTTCGACGAATTTC 59.097 33.333 11.71 6.12 33.42 2.17
167 172 6.892658 AAAGTTGCCATGATGTTTACACTA 57.107 33.333 0.00 0.00 0.00 2.74
275 280 7.702348 GGCAAGTCCAATACTTTGATCATAAAC 59.298 37.037 0.00 0.00 46.61 2.01
309 315 4.231718 TGAACCACGGCAATTTTAAGTC 57.768 40.909 0.00 0.00 0.00 3.01
465 475 5.340439 TCATGGCAATTCATGTGCAATAA 57.660 34.783 8.81 0.00 44.07 1.40
591 609 9.840427 TCTTCAATCGGATTTTTCATTTAAGAC 57.160 29.630 0.00 0.00 0.00 3.01
650 668 3.887741 GCACATACATGCATGCGATAAA 58.112 40.909 26.53 5.81 45.39 1.40
675 693 5.555966 TGATGCAGTTTGTGTGTTATAGGA 58.444 37.500 0.00 0.00 0.00 2.94
704 722 1.681780 CGGGTTTGGCTCATACCACAT 60.682 52.381 13.74 0.00 40.19 3.21
707 725 3.616219 GGTTTGGCTCATACCACATGTA 58.384 45.455 0.00 0.00 40.19 2.29
709 727 5.373222 GGTTTGGCTCATACCACATGTATA 58.627 41.667 0.00 0.00 40.19 1.47
724 742 5.007626 CACATGTATAGGCATTAGCGTTGTT 59.992 40.000 0.00 0.00 43.41 2.83
731 749 4.881920 AGGCATTAGCGTTGTTCAAAAAT 58.118 34.783 0.00 0.00 43.41 1.82
737 755 8.523464 GCATTAGCGTTGTTCAAAAATACTATG 58.477 33.333 0.00 0.00 0.00 2.23
741 759 7.081976 AGCGTTGTTCAAAAATACTATGTTCC 58.918 34.615 0.00 0.00 0.00 3.62
742 760 6.032042 GCGTTGTTCAAAAATACTATGTTCCG 59.968 38.462 0.00 0.00 0.00 4.30
743 761 7.073265 CGTTGTTCAAAAATACTATGTTCCGT 58.927 34.615 0.00 0.00 0.00 4.69
744 762 7.267600 CGTTGTTCAAAAATACTATGTTCCGTC 59.732 37.037 0.00 0.00 0.00 4.79
745 763 6.823531 TGTTCAAAAATACTATGTTCCGTCG 58.176 36.000 0.00 0.00 0.00 5.12
746 764 6.645827 TGTTCAAAAATACTATGTTCCGTCGA 59.354 34.615 0.00 0.00 0.00 4.20
747 765 6.636666 TCAAAAATACTATGTTCCGTCGAC 57.363 37.500 5.18 5.18 0.00 4.20
748 766 5.577945 TCAAAAATACTATGTTCCGTCGACC 59.422 40.000 10.58 0.00 0.00 4.79
749 767 4.996788 AAATACTATGTTCCGTCGACCT 57.003 40.909 10.58 0.00 0.00 3.85
750 768 4.564940 AATACTATGTTCCGTCGACCTC 57.435 45.455 10.58 0.00 0.00 3.85
751 769 0.731417 ACTATGTTCCGTCGACCTCG 59.269 55.000 10.58 0.00 41.45 4.63
752 770 0.731417 CTATGTTCCGTCGACCTCGT 59.269 55.000 10.58 2.33 40.80 4.18
753 771 0.448990 TATGTTCCGTCGACCTCGTG 59.551 55.000 10.58 0.00 40.80 4.35
754 772 2.804090 GTTCCGTCGACCTCGTGC 60.804 66.667 10.58 0.00 40.80 5.34
755 773 4.394078 TTCCGTCGACCTCGTGCG 62.394 66.667 10.58 0.00 40.80 5.34
757 775 4.695231 CCGTCGACCTCGTGCGTT 62.695 66.667 10.58 0.00 40.80 4.84
758 776 2.728383 CGTCGACCTCGTGCGTTT 60.728 61.111 10.58 0.00 40.80 3.60
759 777 2.297912 CGTCGACCTCGTGCGTTTT 61.298 57.895 10.58 0.00 40.80 2.43
760 778 1.814211 CGTCGACCTCGTGCGTTTTT 61.814 55.000 10.58 0.00 40.80 1.94
761 779 0.382636 GTCGACCTCGTGCGTTTTTG 60.383 55.000 3.51 0.00 40.80 2.44
762 780 0.806884 TCGACCTCGTGCGTTTTTGT 60.807 50.000 0.00 0.00 40.80 2.83
763 781 0.382636 CGACCTCGTGCGTTTTTGTC 60.383 55.000 0.00 0.00 34.11 3.18
764 782 0.382636 GACCTCGTGCGTTTTTGTCG 60.383 55.000 0.00 0.00 0.00 4.35
765 783 1.085501 ACCTCGTGCGTTTTTGTCGT 61.086 50.000 0.00 0.00 0.00 4.34
766 784 0.382636 CCTCGTGCGTTTTTGTCGTC 60.383 55.000 0.00 0.00 0.00 4.20
767 785 0.382636 CTCGTGCGTTTTTGTCGTCC 60.383 55.000 0.00 0.00 0.00 4.79
768 786 0.806884 TCGTGCGTTTTTGTCGTCCT 60.807 50.000 0.00 0.00 0.00 3.85
769 787 0.382636 CGTGCGTTTTTGTCGTCCTC 60.383 55.000 0.00 0.00 0.00 3.71
770 788 0.382636 GTGCGTTTTTGTCGTCCTCG 60.383 55.000 0.00 0.00 38.55 4.63
771 789 1.438222 GCGTTTTTGTCGTCCTCGC 60.438 57.895 0.00 0.00 36.96 5.03
772 790 1.928653 CGTTTTTGTCGTCCTCGCA 59.071 52.632 0.00 0.00 36.96 5.10
773 791 0.382636 CGTTTTTGTCGTCCTCGCAC 60.383 55.000 0.00 0.00 36.96 5.34
774 792 0.041576 GTTTTTGTCGTCCTCGCACC 60.042 55.000 0.00 0.00 36.96 5.01
775 793 0.462225 TTTTTGTCGTCCTCGCACCA 60.462 50.000 0.00 0.00 36.96 4.17
776 794 0.250124 TTTTGTCGTCCTCGCACCAT 60.250 50.000 0.00 0.00 36.96 3.55
777 795 0.669318 TTTGTCGTCCTCGCACCATC 60.669 55.000 0.00 0.00 36.96 3.51
778 796 1.532604 TTGTCGTCCTCGCACCATCT 61.533 55.000 0.00 0.00 36.96 2.90
779 797 1.226717 GTCGTCCTCGCACCATCTC 60.227 63.158 0.00 0.00 36.96 2.75
780 798 1.677633 TCGTCCTCGCACCATCTCA 60.678 57.895 0.00 0.00 36.96 3.27
781 799 1.037579 TCGTCCTCGCACCATCTCAT 61.038 55.000 0.00 0.00 36.96 2.90
782 800 0.179100 CGTCCTCGCACCATCTCATT 60.179 55.000 0.00 0.00 0.00 2.57
783 801 1.293924 GTCCTCGCACCATCTCATTG 58.706 55.000 0.00 0.00 0.00 2.82
784 802 0.178767 TCCTCGCACCATCTCATTGG 59.821 55.000 0.00 0.00 42.82 3.16
785 803 0.178767 CCTCGCACCATCTCATTGGA 59.821 55.000 0.00 0.00 39.25 3.53
786 804 1.293924 CTCGCACCATCTCATTGGAC 58.706 55.000 0.00 0.00 39.25 4.02
787 805 0.904649 TCGCACCATCTCATTGGACT 59.095 50.000 0.00 0.00 39.25 3.85
788 806 1.012086 CGCACCATCTCATTGGACTG 58.988 55.000 0.00 0.00 39.25 3.51
789 807 1.386533 GCACCATCTCATTGGACTGG 58.613 55.000 0.00 0.00 39.25 4.00
790 808 2.020694 GCACCATCTCATTGGACTGGG 61.021 57.143 0.00 0.00 39.25 4.45
791 809 0.257039 ACCATCTCATTGGACTGGGC 59.743 55.000 0.00 0.00 39.25 5.36
792 810 0.466922 CCATCTCATTGGACTGGGCC 60.467 60.000 0.00 0.00 39.25 5.80
793 811 0.816825 CATCTCATTGGACTGGGCCG 60.817 60.000 0.00 0.00 0.00 6.13
794 812 2.615227 ATCTCATTGGACTGGGCCGC 62.615 60.000 0.00 0.00 0.00 6.53
795 813 3.626996 CTCATTGGACTGGGCCGCA 62.627 63.158 0.00 0.00 0.00 5.69
796 814 2.440796 CATTGGACTGGGCCGCAT 60.441 61.111 0.00 0.00 0.00 4.73
797 815 2.124151 ATTGGACTGGGCCGCATC 60.124 61.111 0.00 0.00 0.00 3.91
798 816 2.982643 ATTGGACTGGGCCGCATCA 61.983 57.895 0.00 0.00 0.00 3.07
799 817 2.288642 ATTGGACTGGGCCGCATCAT 62.289 55.000 0.00 0.00 0.00 2.45
800 818 2.903855 GGACTGGGCCGCATCATG 60.904 66.667 0.00 0.00 0.00 3.07
801 819 3.589881 GACTGGGCCGCATCATGC 61.590 66.667 0.00 0.00 40.69 4.06
802 820 4.119363 ACTGGGCCGCATCATGCT 62.119 61.111 8.30 0.00 42.25 3.79
803 821 3.285215 CTGGGCCGCATCATGCTC 61.285 66.667 8.30 0.00 42.25 4.26
804 822 4.112433 TGGGCCGCATCATGCTCA 62.112 61.111 8.30 0.00 42.25 4.26
805 823 2.596631 GGGCCGCATCATGCTCAT 60.597 61.111 8.30 0.00 42.25 2.90
806 824 2.643272 GGCCGCATCATGCTCATG 59.357 61.111 8.30 3.55 42.25 3.07
807 825 2.643272 GCCGCATCATGCTCATGG 59.357 61.111 8.30 2.21 42.25 3.66
808 826 2.916052 GCCGCATCATGCTCATGGG 61.916 63.158 8.30 1.80 42.25 4.00
809 827 2.643272 CGCATCATGCTCATGGGC 59.357 61.111 11.75 11.75 42.25 5.36
810 828 2.916052 CGCATCATGCTCATGGGCC 61.916 63.158 16.70 0.00 42.25 5.80
811 829 2.916052 GCATCATGCTCATGGGCCG 61.916 63.158 16.70 6.41 40.96 6.13
812 830 1.228033 CATCATGCTCATGGGCCGA 60.228 57.895 16.70 12.40 39.24 5.54
813 831 0.608308 CATCATGCTCATGGGCCGAT 60.608 55.000 16.70 14.29 39.24 4.18
814 832 0.608308 ATCATGCTCATGGGCCGATG 60.608 55.000 20.95 20.95 39.24 3.84
815 833 2.114625 ATGCTCATGGGCCGATGG 59.885 61.111 25.51 17.36 0.00 3.51
816 834 2.454688 ATGCTCATGGGCCGATGGA 61.455 57.895 25.51 12.56 0.00 3.41
817 835 1.786407 ATGCTCATGGGCCGATGGAT 61.786 55.000 25.51 13.38 0.00 3.41
818 836 1.228367 GCTCATGGGCCGATGGATT 60.228 57.895 25.51 0.00 0.00 3.01
819 837 0.825010 GCTCATGGGCCGATGGATTT 60.825 55.000 25.51 0.00 0.00 2.17
820 838 0.956633 CTCATGGGCCGATGGATTTG 59.043 55.000 25.51 2.60 0.00 2.32
821 839 1.108727 TCATGGGCCGATGGATTTGC 61.109 55.000 25.51 0.00 0.00 3.68
822 840 1.111116 CATGGGCCGATGGATTTGCT 61.111 55.000 19.41 0.00 0.00 3.91
823 841 0.478072 ATGGGCCGATGGATTTGCTA 59.522 50.000 0.00 0.00 0.00 3.49
824 842 0.478072 TGGGCCGATGGATTTGCTAT 59.522 50.000 0.00 0.00 0.00 2.97
825 843 0.883833 GGGCCGATGGATTTGCTATG 59.116 55.000 0.00 0.00 0.00 2.23
826 844 1.609208 GGCCGATGGATTTGCTATGT 58.391 50.000 0.00 0.00 0.00 2.29
827 845 1.956477 GGCCGATGGATTTGCTATGTT 59.044 47.619 0.00 0.00 0.00 2.71
828 846 2.030805 GGCCGATGGATTTGCTATGTTC 60.031 50.000 0.00 0.00 0.00 3.18
829 847 2.880890 GCCGATGGATTTGCTATGTTCT 59.119 45.455 0.00 0.00 0.00 3.01
830 848 3.304257 GCCGATGGATTTGCTATGTTCTG 60.304 47.826 0.00 0.00 0.00 3.02
831 849 3.304257 CCGATGGATTTGCTATGTTCTGC 60.304 47.826 0.00 0.00 0.00 4.26
832 850 3.304257 CGATGGATTTGCTATGTTCTGCC 60.304 47.826 0.00 0.00 0.00 4.85
833 851 2.016318 TGGATTTGCTATGTTCTGCCG 58.984 47.619 0.00 0.00 0.00 5.69
834 852 1.334869 GGATTTGCTATGTTCTGCCGG 59.665 52.381 0.00 0.00 0.00 6.13
835 853 2.017049 GATTTGCTATGTTCTGCCGGT 58.983 47.619 1.90 0.00 0.00 5.28
836 854 1.164411 TTTGCTATGTTCTGCCGGTG 58.836 50.000 1.90 0.00 0.00 4.94
837 855 0.036164 TTGCTATGTTCTGCCGGTGT 59.964 50.000 1.90 0.00 0.00 4.16
838 856 0.036164 TGCTATGTTCTGCCGGTGTT 59.964 50.000 1.90 0.00 0.00 3.32
839 857 1.165270 GCTATGTTCTGCCGGTGTTT 58.835 50.000 1.90 0.00 0.00 2.83
840 858 2.289756 TGCTATGTTCTGCCGGTGTTTA 60.290 45.455 1.90 0.00 0.00 2.01
841 859 2.351726 GCTATGTTCTGCCGGTGTTTAG 59.648 50.000 1.90 0.00 0.00 1.85
842 860 1.165270 ATGTTCTGCCGGTGTTTAGC 58.835 50.000 1.90 0.00 0.00 3.09
843 861 0.887387 TGTTCTGCCGGTGTTTAGCC 60.887 55.000 1.90 0.00 0.00 3.93
849 867 2.559330 CGGTGTTTAGCCGTTGCC 59.441 61.111 0.00 0.00 43.84 4.52
850 868 2.255172 CGGTGTTTAGCCGTTGCCA 61.255 57.895 0.00 0.00 43.84 4.92
851 869 1.284715 GGTGTTTAGCCGTTGCCAC 59.715 57.895 0.00 0.00 38.69 5.01
852 870 1.170290 GGTGTTTAGCCGTTGCCACT 61.170 55.000 0.00 0.00 38.69 4.00
853 871 0.040425 GTGTTTAGCCGTTGCCACTG 60.040 55.000 0.00 0.00 38.69 3.66
854 872 1.169661 TGTTTAGCCGTTGCCACTGG 61.170 55.000 0.00 0.00 38.69 4.00
855 873 0.887387 GTTTAGCCGTTGCCACTGGA 60.887 55.000 0.00 0.00 38.69 3.86
856 874 0.037590 TTTAGCCGTTGCCACTGGAT 59.962 50.000 0.00 0.10 38.69 3.41
857 875 0.676466 TTAGCCGTTGCCACTGGATG 60.676 55.000 0.00 0.00 38.69 3.51
858 876 4.120331 GCCGTTGCCACTGGATGC 62.120 66.667 0.00 0.00 0.00 3.91
859 877 2.360350 CCGTTGCCACTGGATGCT 60.360 61.111 0.00 0.00 0.00 3.79
860 878 2.693762 CCGTTGCCACTGGATGCTG 61.694 63.158 0.00 0.00 0.00 4.41
861 879 2.570181 GTTGCCACTGGATGCTGC 59.430 61.111 0.00 0.00 0.00 5.25
862 880 3.057548 TTGCCACTGGATGCTGCG 61.058 61.111 0.00 0.00 0.00 5.18
892 910 3.048602 CGTGTTGGACGTCCCTCT 58.951 61.111 31.19 0.00 43.50 3.69
893 911 1.080705 CGTGTTGGACGTCCCTCTC 60.081 63.158 31.19 21.07 43.50 3.20
894 912 1.524863 CGTGTTGGACGTCCCTCTCT 61.525 60.000 31.19 0.00 43.50 3.10
895 913 0.038159 GTGTTGGACGTCCCTCTCTG 60.038 60.000 31.19 0.00 35.38 3.35
896 914 1.079750 GTTGGACGTCCCTCTCTGC 60.080 63.158 31.19 9.79 35.38 4.26
897 915 1.533033 TTGGACGTCCCTCTCTGCA 60.533 57.895 31.19 7.57 35.38 4.41
898 916 1.536073 TTGGACGTCCCTCTCTGCAG 61.536 60.000 31.19 7.63 35.38 4.41
899 917 1.979693 GGACGTCCCTCTCTGCAGT 60.980 63.158 24.75 0.00 0.00 4.40
900 918 0.680280 GGACGTCCCTCTCTGCAGTA 60.680 60.000 24.75 2.31 0.00 2.74
901 919 0.736053 GACGTCCCTCTCTGCAGTAG 59.264 60.000 14.67 12.28 0.00 2.57
902 920 0.038455 ACGTCCCTCTCTGCAGTAGT 59.962 55.000 14.67 0.95 0.00 2.73
903 921 1.178276 CGTCCCTCTCTGCAGTAGTT 58.822 55.000 14.67 0.00 0.00 2.24
904 922 1.546476 CGTCCCTCTCTGCAGTAGTTT 59.454 52.381 14.67 0.00 0.00 2.66
905 923 2.028930 CGTCCCTCTCTGCAGTAGTTTT 60.029 50.000 14.67 0.00 0.00 2.43
906 924 3.330267 GTCCCTCTCTGCAGTAGTTTTG 58.670 50.000 14.67 0.49 0.00 2.44
907 925 2.972713 TCCCTCTCTGCAGTAGTTTTGT 59.027 45.455 14.67 0.00 0.00 2.83
908 926 3.391296 TCCCTCTCTGCAGTAGTTTTGTT 59.609 43.478 14.67 0.00 0.00 2.83
909 927 3.748568 CCCTCTCTGCAGTAGTTTTGTTC 59.251 47.826 14.67 0.00 0.00 3.18
910 928 4.503991 CCCTCTCTGCAGTAGTTTTGTTCT 60.504 45.833 14.67 0.00 0.00 3.01
911 929 5.279506 CCCTCTCTGCAGTAGTTTTGTTCTA 60.280 44.000 14.67 0.00 0.00 2.10
912 930 5.635700 CCTCTCTGCAGTAGTTTTGTTCTAC 59.364 44.000 14.67 0.00 38.30 2.59
913 931 5.220381 TCTCTGCAGTAGTTTTGTTCTACG 58.780 41.667 14.67 0.00 41.55 3.51
914 932 4.940463 TCTGCAGTAGTTTTGTTCTACGT 58.060 39.130 14.67 0.00 41.55 3.57
915 933 4.980434 TCTGCAGTAGTTTTGTTCTACGTC 59.020 41.667 14.67 0.00 41.55 4.34
916 934 4.684877 TGCAGTAGTTTTGTTCTACGTCA 58.315 39.130 0.00 0.00 41.55 4.35
917 935 4.743151 TGCAGTAGTTTTGTTCTACGTCAG 59.257 41.667 0.00 0.00 41.55 3.51
918 936 4.980434 GCAGTAGTTTTGTTCTACGTCAGA 59.020 41.667 0.00 0.00 41.55 3.27
919 937 5.461078 GCAGTAGTTTTGTTCTACGTCAGAA 59.539 40.000 0.00 0.00 41.55 3.02
920 938 6.345882 GCAGTAGTTTTGTTCTACGTCAGAAG 60.346 42.308 0.00 0.00 44.02 2.85
921 939 6.916387 CAGTAGTTTTGTTCTACGTCAGAAGA 59.084 38.462 0.00 0.00 44.02 2.87
922 940 7.595502 CAGTAGTTTTGTTCTACGTCAGAAGAT 59.404 37.037 0.00 0.00 44.02 2.40
923 941 7.808856 AGTAGTTTTGTTCTACGTCAGAAGATC 59.191 37.037 0.00 0.00 44.02 2.75
924 942 6.750148 AGTTTTGTTCTACGTCAGAAGATCT 58.250 36.000 0.00 0.00 44.02 2.75
925 943 6.864165 AGTTTTGTTCTACGTCAGAAGATCTC 59.136 38.462 0.00 0.00 44.02 2.75
926 944 4.601621 TGTTCTACGTCAGAAGATCTCG 57.398 45.455 0.00 0.00 44.02 4.04
927 945 4.001652 TGTTCTACGTCAGAAGATCTCGT 58.998 43.478 10.72 10.72 44.02 4.18
928 946 4.454847 TGTTCTACGTCAGAAGATCTCGTT 59.545 41.667 11.11 0.00 44.02 3.85
929 947 4.861389 TCTACGTCAGAAGATCTCGTTC 57.139 45.455 11.11 0.00 31.01 3.95
1086 1104 0.038166 ACACCCAAGGCATGTACCAG 59.962 55.000 0.00 0.00 0.00 4.00
1135 1153 0.040058 TGTGCTTGGATTCCAGCCAT 59.960 50.000 18.48 0.00 33.81 4.40
1177 1195 1.588674 TCGCATTTGTTGTCGTCCTT 58.411 45.000 0.00 0.00 0.00 3.36
1258 1276 4.397832 GCCGCCGTTGGAGGGTAA 62.398 66.667 7.74 0.00 43.05 2.85
1280 1298 2.306255 ATCGCCGCCAATTACCGACT 62.306 55.000 0.00 0.00 0.00 4.18
1554 1572 2.796593 GTTCAATGCCACTTTCAACTGC 59.203 45.455 0.00 0.00 0.00 4.40
1564 1582 3.431572 CACTTTCAACTGCTGTAGAGCTC 59.568 47.826 13.66 5.27 46.39 4.09
1797 1815 9.149225 TGTTGCATGTATTGGTGAATTTATTTC 57.851 29.630 0.00 0.00 34.72 2.17
1900 1918 1.819632 GCCTTCGCCGATGGTCATT 60.820 57.895 18.82 0.00 30.69 2.57
1983 2001 4.558178 CAAGGCATTGTTCTGCATACAAA 58.442 39.130 15.75 3.62 44.12 2.83
2016 2034 3.607775 GCTTACACAGTGTCTGCATGTTG 60.608 47.826 10.23 0.00 34.37 3.33
2141 2160 2.440980 GCATCACCAGGGGCTTCC 60.441 66.667 0.00 0.00 0.00 3.46
2271 2290 8.569641 AGTTGCTGTACGGTAATTTTCATTTAA 58.430 29.630 8.54 0.00 0.00 1.52
2355 2374 9.354673 CTAGGGAAATCCATATGTAACAATTGT 57.645 33.333 4.92 4.92 38.24 2.71
2492 2514 3.181490 GGGTTTGGGCGTTGAATATCTTC 60.181 47.826 0.00 0.00 0.00 2.87
2578 2600 2.611722 GGAGAGAGTTTGAGGTGAGCAC 60.612 54.545 0.00 0.00 0.00 4.40
2641 2663 8.441312 TTGGTAGTGTAAGTTCCTTTTAAGTG 57.559 34.615 0.00 0.00 0.00 3.16
2665 2687 5.901413 AAGGCTGATATCAGGAAAGATCA 57.099 39.130 29.43 0.00 43.94 2.92
2735 2757 2.996249 TATTTGCTGCTCCCTCTGAG 57.004 50.000 0.00 0.00 44.47 3.35
2748 2789 5.874093 CTCCCTCTGAGCCATATTAATTGT 58.126 41.667 0.00 0.00 33.47 2.71
2749 2790 5.869579 TCCCTCTGAGCCATATTAATTGTC 58.130 41.667 0.00 0.00 0.00 3.18
2750 2791 4.692625 CCCTCTGAGCCATATTAATTGTCG 59.307 45.833 0.00 0.00 0.00 4.35
2751 2792 4.153117 CCTCTGAGCCATATTAATTGTCGC 59.847 45.833 0.00 0.00 0.00 5.19
2752 2793 4.960938 TCTGAGCCATATTAATTGTCGCT 58.039 39.130 0.00 0.00 0.00 4.93
2753 2794 4.751600 TCTGAGCCATATTAATTGTCGCTG 59.248 41.667 0.00 0.00 0.00 5.18
2754 2795 3.250762 TGAGCCATATTAATTGTCGCTGC 59.749 43.478 0.00 0.00 0.00 5.25
2755 2796 3.480470 AGCCATATTAATTGTCGCTGCT 58.520 40.909 0.00 0.00 0.00 4.24
2756 2797 3.885297 AGCCATATTAATTGTCGCTGCTT 59.115 39.130 0.00 0.00 0.00 3.91
2757 2798 4.339247 AGCCATATTAATTGTCGCTGCTTT 59.661 37.500 0.00 0.00 0.00 3.51
2758 2799 5.530915 AGCCATATTAATTGTCGCTGCTTTA 59.469 36.000 0.00 0.00 0.00 1.85
2759 2800 5.853282 GCCATATTAATTGTCGCTGCTTTAG 59.147 40.000 0.00 0.00 0.00 1.85
2760 2801 6.513393 GCCATATTAATTGTCGCTGCTTTAGT 60.513 38.462 0.00 0.00 0.00 2.24
2761 2802 7.307751 GCCATATTAATTGTCGCTGCTTTAGTA 60.308 37.037 0.00 0.00 0.00 1.82
2762 2803 8.009974 CCATATTAATTGTCGCTGCTTTAGTAC 58.990 37.037 0.00 0.00 0.00 2.73
2763 2804 6.978343 ATTAATTGTCGCTGCTTTAGTACA 57.022 33.333 0.00 0.00 0.00 2.90
2764 2805 6.788684 TTAATTGTCGCTGCTTTAGTACAA 57.211 33.333 0.00 0.00 38.16 2.41
2765 2806 5.880054 AATTGTCGCTGCTTTAGTACAAT 57.120 34.783 0.00 0.00 42.11 2.71
2881 2922 2.290071 TGTTACTAAAGCTGGTCAGGCC 60.290 50.000 0.00 0.00 37.90 5.19
2899 2940 1.487558 GCCGGTCTTAATGGGGAGTAA 59.512 52.381 1.90 0.00 0.00 2.24
2975 3016 7.883391 ACATTAGTATCATATACTCCCTCCG 57.117 40.000 2.93 0.00 0.00 4.63
2976 3017 7.411808 ACATTAGTATCATATACTCCCTCCGT 58.588 38.462 2.93 0.00 0.00 4.69
2977 3018 7.894364 ACATTAGTATCATATACTCCCTCCGTT 59.106 37.037 2.93 0.00 0.00 4.44
2978 3019 7.934855 TTAGTATCATATACTCCCTCCGTTC 57.065 40.000 2.93 0.00 0.00 3.95
2979 3020 5.262804 AGTATCATATACTCCCTCCGTTCC 58.737 45.833 0.00 0.00 0.00 3.62
2980 3021 3.897657 TCATATACTCCCTCCGTTCCT 57.102 47.619 0.00 0.00 0.00 3.36
2981 3022 5.531753 ATCATATACTCCCTCCGTTCCTA 57.468 43.478 0.00 0.00 0.00 2.94
2982 3023 5.329191 TCATATACTCCCTCCGTTCCTAA 57.671 43.478 0.00 0.00 0.00 2.69
2983 3024 5.708544 TCATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
2984 3025 6.320518 TCATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
2985 3026 7.472741 TCATATACTCCCTCCGTTCCTAAATA 58.527 38.462 0.00 0.00 0.00 1.40
2986 3027 8.120538 TCATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
2987 3028 9.417561 CATATACTCCCTCCGTTCCTAAATATA 57.582 37.037 0.00 0.00 0.00 0.86
2989 3030 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2990 3031 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2991 3032 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2992 3033 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2993 3034 6.267014 TCCCTCCGTTCCTAAATATAAGTCTG 59.733 42.308 0.00 0.00 0.00 3.51
2994 3035 6.041751 CCCTCCGTTCCTAAATATAAGTCTGT 59.958 42.308 0.00 0.00 0.00 3.41
2995 3036 7.418712 CCCTCCGTTCCTAAATATAAGTCTGTT 60.419 40.741 0.00 0.00 0.00 3.16
2996 3037 7.985752 CCTCCGTTCCTAAATATAAGTCTGTTT 59.014 37.037 0.00 0.00 0.00 2.83
3057 3098 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
3068 3109 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3069 3110 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3070 3111 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3071 3112 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3072 3113 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3073 3114 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3074 3115 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3075 3116 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3076 3117 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3077 3118 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3078 3119 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3079 3120 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3080 3121 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3081 3122 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3082 3123 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
3083 3124 1.842052 TGCTCCGTATGTAGTCCACA 58.158 50.000 0.00 0.00 42.69 4.17
3085 3126 2.764010 TGCTCCGTATGTAGTCCACATT 59.236 45.455 0.00 0.00 46.01 2.71
3086 3127 3.955551 TGCTCCGTATGTAGTCCACATTA 59.044 43.478 0.00 0.00 46.01 1.90
3087 3128 4.037565 TGCTCCGTATGTAGTCCACATTAG 59.962 45.833 0.00 0.00 46.01 1.73
3088 3129 4.277672 GCTCCGTATGTAGTCCACATTAGA 59.722 45.833 0.00 0.00 46.01 2.10
3089 3130 5.221185 GCTCCGTATGTAGTCCACATTAGAA 60.221 44.000 0.00 0.00 46.01 2.10
3090 3131 6.516860 GCTCCGTATGTAGTCCACATTAGAAT 60.517 42.308 0.00 0.00 46.01 2.40
3091 3132 6.978338 TCCGTATGTAGTCCACATTAGAATC 58.022 40.000 0.00 0.00 46.01 2.52
3092 3133 6.776116 TCCGTATGTAGTCCACATTAGAATCT 59.224 38.462 0.00 0.00 46.01 2.40
3093 3134 7.040617 TCCGTATGTAGTCCACATTAGAATCTC 60.041 40.741 0.00 0.00 46.01 2.75
3094 3135 7.040340 CCGTATGTAGTCCACATTAGAATCTCT 60.040 40.741 0.00 0.00 46.01 3.10
3095 3136 9.000486 CGTATGTAGTCCACATTAGAATCTCTA 58.000 37.037 0.00 0.00 46.01 2.43
3102 3143 9.660180 AGTCCACATTAGAATCTCTAAAAAGAC 57.340 33.333 0.50 5.95 41.72 3.01
3103 3144 9.660180 GTCCACATTAGAATCTCTAAAAAGACT 57.340 33.333 0.50 0.00 41.72 3.24
3245 3286 9.906660 TTTAATTATGTGTCACCTCATCAAAAC 57.093 29.630 0.00 0.00 0.00 2.43
3290 3331 5.208890 ACTAGCTATGACACTCCCATTACA 58.791 41.667 0.00 0.00 0.00 2.41
3313 3354 3.518303 ACCAACCTCATAGTGGGAGTAAC 59.482 47.826 0.00 0.00 34.08 2.50
3342 3874 1.826385 AATATAGCGCATCCCAAGGC 58.174 50.000 11.47 0.00 0.00 4.35
3424 3968 4.697352 CACCCCAAGACAAAATGAGTCTAG 59.303 45.833 0.00 0.00 45.11 2.43
3501 4045 4.778213 ATGACCAGCCTAATGTACACAT 57.222 40.909 0.00 0.00 38.41 3.21
3618 4162 2.906389 ACTACAAGCATCCAACTCCTCA 59.094 45.455 0.00 0.00 0.00 3.86
3751 4295 7.306807 CCTTGTTATGTCAGAACGTAGCATATG 60.307 40.741 5.90 0.00 37.75 1.78
3788 4332 0.597637 GCCATGACCGATACTGACCG 60.598 60.000 0.00 0.00 0.00 4.79
3948 4492 0.992802 GCGGAGAATTCACGAGTGAC 59.007 55.000 21.75 4.65 39.66 3.67
4015 4559 3.861846 TGAGCCTCTATGTGGACCATAT 58.138 45.455 8.92 8.92 35.50 1.78
4109 4653 1.476891 GCATACTTCTCGTCTGGGTCA 59.523 52.381 0.00 0.00 0.00 4.02
4118 4662 1.878775 GTCTGGGTCATGCACTTGC 59.121 57.895 0.00 0.00 42.50 4.01
4191 4735 2.996155 GTTCTCGACTTCAGAACGTCA 58.004 47.619 11.16 1.90 40.23 4.35
4192 4736 3.369385 GTTCTCGACTTCAGAACGTCAA 58.631 45.455 11.16 0.00 40.23 3.18
4193 4737 3.269486 TCTCGACTTCAGAACGTCAAG 57.731 47.619 11.16 4.78 0.00 3.02
4194 4738 2.617308 TCTCGACTTCAGAACGTCAAGT 59.383 45.455 11.16 0.00 32.93 3.16
4195 4739 2.974536 CTCGACTTCAGAACGTCAAGTC 59.025 50.000 14.88 14.88 41.75 3.01
4196 4740 2.356695 TCGACTTCAGAACGTCAAGTCA 59.643 45.455 20.57 10.97 44.25 3.41
4197 4741 3.113322 CGACTTCAGAACGTCAAGTCAA 58.887 45.455 20.57 0.00 44.25 3.18
4198 4742 3.550275 CGACTTCAGAACGTCAAGTCAAA 59.450 43.478 20.57 3.08 44.25 2.69
4199 4743 4.032445 CGACTTCAGAACGTCAAGTCAAAA 59.968 41.667 20.57 2.81 44.25 2.44
4200 4744 5.276868 CGACTTCAGAACGTCAAGTCAAAAT 60.277 40.000 20.57 0.00 44.25 1.82
4201 4745 6.436843 ACTTCAGAACGTCAAGTCAAAATT 57.563 33.333 0.00 0.00 0.00 1.82
4202 4746 6.852664 ACTTCAGAACGTCAAGTCAAAATTT 58.147 32.000 0.00 0.00 0.00 1.82
4203 4747 7.312899 ACTTCAGAACGTCAAGTCAAAATTTT 58.687 30.769 0.00 0.00 0.00 1.82
4204 4748 7.484959 ACTTCAGAACGTCAAGTCAAAATTTTC 59.515 33.333 0.00 0.00 0.00 2.29
4205 4749 7.083875 TCAGAACGTCAAGTCAAAATTTTCT 57.916 32.000 0.00 0.00 0.00 2.52
4206 4750 7.535139 TCAGAACGTCAAGTCAAAATTTTCTT 58.465 30.769 0.00 0.00 0.00 2.52
4207 4751 7.696453 TCAGAACGTCAAGTCAAAATTTTCTTC 59.304 33.333 0.00 0.00 0.00 2.87
4208 4752 7.698130 CAGAACGTCAAGTCAAAATTTTCTTCT 59.302 33.333 0.00 0.00 0.00 2.85
4209 4753 8.244113 AGAACGTCAAGTCAAAATTTTCTTCTT 58.756 29.630 0.00 3.62 0.00 2.52
4210 4754 7.971004 ACGTCAAGTCAAAATTTTCTTCTTC 57.029 32.000 0.00 0.00 0.00 2.87
4211 4755 7.762382 ACGTCAAGTCAAAATTTTCTTCTTCT 58.238 30.769 0.00 0.00 0.00 2.85
4212 4756 8.244113 ACGTCAAGTCAAAATTTTCTTCTTCTT 58.756 29.630 0.00 0.00 0.00 2.52
4213 4757 8.737648 CGTCAAGTCAAAATTTTCTTCTTCTTC 58.262 33.333 0.00 0.08 0.00 2.87
4214 4758 9.794685 GTCAAGTCAAAATTTTCTTCTTCTTCT 57.205 29.630 0.00 0.00 0.00 2.85
4239 4783 9.831737 CTTCAACATCAAGTCAAAATTAGTAGG 57.168 33.333 0.00 0.00 0.00 3.18
4240 4784 8.335532 TCAACATCAAGTCAAAATTAGTAGGG 57.664 34.615 0.00 0.00 0.00 3.53
4241 4785 8.160765 TCAACATCAAGTCAAAATTAGTAGGGA 58.839 33.333 0.00 0.00 0.00 4.20
4242 4786 8.454106 CAACATCAAGTCAAAATTAGTAGGGAG 58.546 37.037 0.00 0.00 0.00 4.30
4299 4848 2.438411 ACTAGTCTAGTTGCGTCAGCT 58.562 47.619 6.71 2.34 45.42 4.24
4300 4849 2.420722 ACTAGTCTAGTTGCGTCAGCTC 59.579 50.000 6.71 0.00 45.42 4.09
4316 4865 4.387256 GTCAGCTCTGCGTATGAATTATCC 59.613 45.833 0.00 0.00 0.00 2.59
4320 4869 3.664107 TCTGCGTATGAATTATCCCTGC 58.336 45.455 0.00 0.00 0.00 4.85
4322 4871 3.664107 TGCGTATGAATTATCCCTGCTC 58.336 45.455 0.00 0.00 0.00 4.26
4327 4876 2.325484 TGAATTATCCCTGCTCGCCTA 58.675 47.619 0.00 0.00 0.00 3.93
4404 4953 7.844493 TCACTCTTACCTAACTTAGACCAAA 57.156 36.000 0.00 0.00 0.00 3.28
4430 4979 3.148340 GGCGACCTTAAATGGACGT 57.852 52.632 7.28 0.00 44.51 4.34
4432 4981 1.405121 GGCGACCTTAAATGGACGTCT 60.405 52.381 16.46 0.00 43.95 4.18
4458 5007 4.974368 TGTCTGAATTTTGTCCGTTTGT 57.026 36.364 0.00 0.00 0.00 2.83
4461 5010 5.099575 GTCTGAATTTTGTCCGTTTGTGTT 58.900 37.500 0.00 0.00 0.00 3.32
4500 5066 1.103398 GGCTGTGTTCTTGGCAGTGT 61.103 55.000 0.00 0.00 33.18 3.55
4512 5078 2.425592 CAGTGTGCCCAAGACGGA 59.574 61.111 0.00 0.00 36.56 4.69
4513 5079 1.003355 CAGTGTGCCCAAGACGGAT 60.003 57.895 0.00 0.00 36.56 4.18
4536 5102 3.005539 ATCTGGTCTGCCACGGCT 61.006 61.111 9.92 0.00 40.46 5.52
4569 5135 5.398416 GCGAAATGTAGACACTTTTTGAACC 59.602 40.000 7.28 0.00 36.18 3.62
4763 5329 1.388547 TTGGTGTGCTCAACCAAGAC 58.611 50.000 12.57 0.00 38.46 3.01
4781 5347 6.067263 CAAGACGTTTTGGAGTTGGAAATA 57.933 37.500 10.84 0.00 0.00 1.40
4823 5411 4.878971 TCTTCAAACATTGTCGGTTCTTGA 59.121 37.500 0.00 0.00 0.00 3.02
4827 5415 1.812571 ACATTGTCGGTTCTTGATGCC 59.187 47.619 0.00 0.00 0.00 4.40
4845 5433 3.825143 GCCCAGGCATAACATTTTCAT 57.175 42.857 3.12 0.00 41.49 2.57
4864 5452 9.713684 ATTTTCATCCTGATATTCAAACCCTTA 57.286 29.630 0.00 0.00 0.00 2.69
4866 5454 7.451731 TCATCCTGATATTCAAACCCTTAGT 57.548 36.000 0.00 0.00 0.00 2.24
4874 5462 2.250031 TCAAACCCTTAGTCGTAGCCA 58.750 47.619 0.00 0.00 0.00 4.75
4903 5491 4.199432 AGTCATCACACTCATCCTCAAC 57.801 45.455 0.00 0.00 0.00 3.18
4944 5532 2.567615 ACACAAGTAGTCATCACCTCCC 59.432 50.000 0.00 0.00 0.00 4.30
4948 5536 4.104102 ACAAGTAGTCATCACCTCCCAAAA 59.896 41.667 0.00 0.00 0.00 2.44
4951 5539 3.884037 AGTCATCACCTCCCAAAACTT 57.116 42.857 0.00 0.00 0.00 2.66
4956 5544 1.071699 TCACCTCCCAAAACTTCTCGG 59.928 52.381 0.00 0.00 0.00 4.63
4962 5550 1.543429 CCCAAAACTTCTCGGTGCTCT 60.543 52.381 0.00 0.00 0.00 4.09
4984 5572 1.133823 TGTCAGTGCAGGGTGTCAAAT 60.134 47.619 0.00 0.00 0.00 2.32
5010 5598 4.260985 ACCACATCGATATTGAAGCACAA 58.739 39.130 0.00 0.00 42.95 3.33
5017 5605 6.312399 TCGATATTGAAGCACAACAAAAGT 57.688 33.333 0.00 0.00 41.52 2.66
5022 5610 2.223386 TGAAGCACAACAAAAGTACGCC 60.223 45.455 0.00 0.00 0.00 5.68
5048 5636 5.654650 CACATCCTTCCTAGTAGTCTCTTGT 59.345 44.000 0.00 0.00 0.00 3.16
5055 5643 3.764434 CCTAGTAGTCTCTTGTTGCTGGA 59.236 47.826 0.00 0.00 0.00 3.86
5060 5648 2.945668 AGTCTCTTGTTGCTGGACAAAC 59.054 45.455 0.00 0.00 40.82 2.93
5070 5658 1.609320 GCTGGACAAACCTCTGTCTCC 60.609 57.143 3.94 0.00 44.33 3.71
5077 5665 3.970640 ACAAACCTCTGTCTCCTCTCTTT 59.029 43.478 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 61 6.035650 CGAGGCAGATTTAATAGTGAAAACGA 59.964 38.462 0.00 0.00 0.00 3.85
68 71 5.707242 ATCTCGTCGAGGCAGATTTAATA 57.293 39.130 21.63 0.00 0.00 0.98
77 80 2.448926 TTGAAAATCTCGTCGAGGCA 57.551 45.000 21.63 4.20 0.00 4.75
91 94 9.739276 ATATCAACATGAGGTCTAGTTTTGAAA 57.261 29.630 0.00 0.00 0.00 2.69
106 109 6.902224 ATTCGTCGAAACATATCAACATGA 57.098 33.333 12.40 0.00 0.00 3.07
167 172 9.319143 CTTTAGCTTAAGCACTATGACAACTAT 57.681 33.333 28.39 5.82 45.16 2.12
275 280 6.096036 TGCCGTGGTTCATACAAAAATAATG 58.904 36.000 0.00 0.00 0.00 1.90
295 301 6.130298 TGATACATGGACTTAAAATTGCCG 57.870 37.500 0.00 0.00 0.00 5.69
309 315 9.985730 ATAAACTAAAATTGCCATGATACATGG 57.014 29.630 21.86 21.86 41.99 3.66
426 434 7.283625 TGCCATGATGTTTACTAAAGTTGTT 57.716 32.000 0.00 0.00 0.00 2.83
538 556 6.320164 CCATTTTCACCATTAAATCCCTCGTA 59.680 38.462 0.00 0.00 0.00 3.43
629 647 3.541071 TTATCGCATGCATGTATGTGC 57.459 42.857 26.67 14.48 45.25 4.57
635 653 3.985279 GCATCATTTTATCGCATGCATGT 59.015 39.130 26.79 10.85 39.76 3.21
648 666 7.814107 CCTATAACACACAAACTGCATCATTTT 59.186 33.333 0.00 0.00 0.00 1.82
650 668 6.658816 TCCTATAACACACAAACTGCATCATT 59.341 34.615 0.00 0.00 0.00 2.57
675 693 2.268076 GCCAAACCCGCTCACACAT 61.268 57.895 0.00 0.00 0.00 3.21
697 715 4.282449 ACGCTAATGCCTATACATGTGGTA 59.718 41.667 9.11 0.68 34.13 3.25
704 722 4.760878 TGAACAACGCTAATGCCTATACA 58.239 39.130 0.00 0.00 35.36 2.29
707 725 5.637006 TTTTGAACAACGCTAATGCCTAT 57.363 34.783 0.00 0.00 35.36 2.57
709 727 4.314740 TTTTTGAACAACGCTAATGCCT 57.685 36.364 0.00 0.00 35.36 4.75
724 742 5.577945 GGTCGACGGAACATAGTATTTTTGA 59.422 40.000 9.92 0.00 0.00 2.69
731 749 1.935873 CGAGGTCGACGGAACATAGTA 59.064 52.381 9.92 0.00 43.02 1.82
737 755 2.804090 GCACGAGGTCGACGGAAC 60.804 66.667 9.92 0.00 43.02 3.62
741 759 1.814211 AAAAACGCACGAGGTCGACG 61.814 55.000 9.92 11.55 43.67 5.12
742 760 0.382636 CAAAAACGCACGAGGTCGAC 60.383 55.000 7.13 7.13 43.02 4.20
743 761 0.806884 ACAAAAACGCACGAGGTCGA 60.807 50.000 6.35 0.00 43.02 4.20
744 762 0.382636 GACAAAAACGCACGAGGTCG 60.383 55.000 0.00 0.00 46.33 4.79
745 763 0.382636 CGACAAAAACGCACGAGGTC 60.383 55.000 0.00 0.00 0.00 3.85
746 764 1.085501 ACGACAAAAACGCACGAGGT 61.086 50.000 0.00 0.00 0.00 3.85
747 765 0.382636 GACGACAAAAACGCACGAGG 60.383 55.000 0.00 0.00 0.00 4.63
748 766 0.382636 GGACGACAAAAACGCACGAG 60.383 55.000 0.00 0.00 0.00 4.18
749 767 0.806884 AGGACGACAAAAACGCACGA 60.807 50.000 0.00 0.00 0.00 4.35
750 768 0.382636 GAGGACGACAAAAACGCACG 60.383 55.000 0.00 0.00 0.00 5.34
751 769 0.382636 CGAGGACGACAAAAACGCAC 60.383 55.000 0.00 0.00 42.66 5.34
752 770 1.928653 CGAGGACGACAAAAACGCA 59.071 52.632 0.00 0.00 42.66 5.24
753 771 1.438222 GCGAGGACGACAAAAACGC 60.438 57.895 0.00 0.00 42.66 4.84
754 772 0.382636 GTGCGAGGACGACAAAAACG 60.383 55.000 0.00 0.00 42.66 3.60
755 773 0.041576 GGTGCGAGGACGACAAAAAC 60.042 55.000 0.00 0.00 42.66 2.43
756 774 0.462225 TGGTGCGAGGACGACAAAAA 60.462 50.000 0.00 0.00 42.66 1.94
757 775 0.250124 ATGGTGCGAGGACGACAAAA 60.250 50.000 0.00 0.00 42.66 2.44
758 776 0.669318 GATGGTGCGAGGACGACAAA 60.669 55.000 0.00 0.00 42.66 2.83
759 777 1.080093 GATGGTGCGAGGACGACAA 60.080 57.895 0.00 0.00 42.66 3.18
760 778 1.934220 GAGATGGTGCGAGGACGACA 61.934 60.000 0.00 0.00 42.66 4.35
761 779 1.226717 GAGATGGTGCGAGGACGAC 60.227 63.158 0.00 0.00 42.66 4.34
762 780 1.037579 ATGAGATGGTGCGAGGACGA 61.038 55.000 0.00 0.00 42.66 4.20
763 781 0.179100 AATGAGATGGTGCGAGGACG 60.179 55.000 0.00 0.00 42.93 4.79
764 782 1.293924 CAATGAGATGGTGCGAGGAC 58.706 55.000 0.00 0.00 0.00 3.85
765 783 0.178767 CCAATGAGATGGTGCGAGGA 59.821 55.000 0.00 0.00 35.65 3.71
766 784 0.178767 TCCAATGAGATGGTGCGAGG 59.821 55.000 0.00 0.00 41.46 4.63
767 785 1.134580 AGTCCAATGAGATGGTGCGAG 60.135 52.381 0.00 0.00 41.46 5.03
768 786 0.904649 AGTCCAATGAGATGGTGCGA 59.095 50.000 0.00 0.00 41.46 5.10
769 787 1.012086 CAGTCCAATGAGATGGTGCG 58.988 55.000 0.00 0.00 41.46 5.34
770 788 1.386533 CCAGTCCAATGAGATGGTGC 58.613 55.000 0.00 0.00 41.46 5.01
771 789 2.020694 GCCCAGTCCAATGAGATGGTG 61.021 57.143 0.00 0.00 41.46 4.17
772 790 0.257039 GCCCAGTCCAATGAGATGGT 59.743 55.000 0.00 0.00 41.46 3.55
773 791 0.466922 GGCCCAGTCCAATGAGATGG 60.467 60.000 0.00 0.00 42.12 3.51
774 792 0.816825 CGGCCCAGTCCAATGAGATG 60.817 60.000 0.00 0.00 0.00 2.90
775 793 1.528824 CGGCCCAGTCCAATGAGAT 59.471 57.895 0.00 0.00 0.00 2.75
776 794 2.989639 CGGCCCAGTCCAATGAGA 59.010 61.111 0.00 0.00 0.00 3.27
777 795 2.825836 GCGGCCCAGTCCAATGAG 60.826 66.667 0.00 0.00 0.00 2.90
778 796 2.891941 GATGCGGCCCAGTCCAATGA 62.892 60.000 0.00 0.00 0.00 2.57
779 797 2.440796 ATGCGGCCCAGTCCAATG 60.441 61.111 0.00 0.00 0.00 2.82
780 798 2.124151 GATGCGGCCCAGTCCAAT 60.124 61.111 0.00 0.00 0.00 3.16
781 799 2.982643 ATGATGCGGCCCAGTCCAA 61.983 57.895 0.00 0.00 0.00 3.53
782 800 3.410628 ATGATGCGGCCCAGTCCA 61.411 61.111 0.00 0.00 0.00 4.02
783 801 2.903855 CATGATGCGGCCCAGTCC 60.904 66.667 0.00 0.00 0.00 3.85
784 802 3.589881 GCATGATGCGGCCCAGTC 61.590 66.667 0.00 0.00 31.71 3.51
793 811 2.916052 CGGCCCATGAGCATGATGC 61.916 63.158 9.89 9.89 45.46 3.91
794 812 0.608308 ATCGGCCCATGAGCATGATG 60.608 55.000 11.84 4.22 41.20 3.07
795 813 0.608308 CATCGGCCCATGAGCATGAT 60.608 55.000 3.96 0.77 41.20 2.45
796 814 1.228033 CATCGGCCCATGAGCATGA 60.228 57.895 3.96 0.00 41.20 3.07
797 815 2.265904 CCATCGGCCCATGAGCATG 61.266 63.158 12.49 3.50 38.51 4.06
798 816 1.786407 ATCCATCGGCCCATGAGCAT 61.786 55.000 12.49 0.00 0.00 3.79
799 817 1.998444 AATCCATCGGCCCATGAGCA 61.998 55.000 12.49 0.00 0.00 4.26
800 818 0.825010 AAATCCATCGGCCCATGAGC 60.825 55.000 12.49 0.00 0.00 4.26
801 819 0.956633 CAAATCCATCGGCCCATGAG 59.043 55.000 12.49 2.29 0.00 2.90
802 820 1.108727 GCAAATCCATCGGCCCATGA 61.109 55.000 12.49 0.00 0.00 3.07
803 821 1.111116 AGCAAATCCATCGGCCCATG 61.111 55.000 2.88 2.88 0.00 3.66
804 822 0.478072 TAGCAAATCCATCGGCCCAT 59.522 50.000 0.00 0.00 0.00 4.00
805 823 0.478072 ATAGCAAATCCATCGGCCCA 59.522 50.000 0.00 0.00 0.00 5.36
806 824 0.883833 CATAGCAAATCCATCGGCCC 59.116 55.000 0.00 0.00 0.00 5.80
807 825 1.609208 ACATAGCAAATCCATCGGCC 58.391 50.000 0.00 0.00 0.00 6.13
808 826 2.880890 AGAACATAGCAAATCCATCGGC 59.119 45.455 0.00 0.00 0.00 5.54
809 827 3.304257 GCAGAACATAGCAAATCCATCGG 60.304 47.826 0.00 0.00 0.00 4.18
810 828 3.304257 GGCAGAACATAGCAAATCCATCG 60.304 47.826 0.00 0.00 0.00 3.84
811 829 3.304257 CGGCAGAACATAGCAAATCCATC 60.304 47.826 0.00 0.00 0.00 3.51
812 830 2.620115 CGGCAGAACATAGCAAATCCAT 59.380 45.455 0.00 0.00 0.00 3.41
813 831 2.016318 CGGCAGAACATAGCAAATCCA 58.984 47.619 0.00 0.00 0.00 3.41
814 832 1.334869 CCGGCAGAACATAGCAAATCC 59.665 52.381 0.00 0.00 0.00 3.01
815 833 2.017049 ACCGGCAGAACATAGCAAATC 58.983 47.619 0.00 0.00 0.00 2.17
816 834 1.745087 CACCGGCAGAACATAGCAAAT 59.255 47.619 0.00 0.00 0.00 2.32
817 835 1.164411 CACCGGCAGAACATAGCAAA 58.836 50.000 0.00 0.00 0.00 3.68
818 836 0.036164 ACACCGGCAGAACATAGCAA 59.964 50.000 0.00 0.00 0.00 3.91
819 837 0.036164 AACACCGGCAGAACATAGCA 59.964 50.000 0.00 0.00 0.00 3.49
820 838 1.165270 AAACACCGGCAGAACATAGC 58.835 50.000 0.00 0.00 0.00 2.97
821 839 2.351726 GCTAAACACCGGCAGAACATAG 59.648 50.000 0.00 0.00 0.00 2.23
822 840 2.352388 GCTAAACACCGGCAGAACATA 58.648 47.619 0.00 0.00 0.00 2.29
823 841 1.165270 GCTAAACACCGGCAGAACAT 58.835 50.000 0.00 0.00 0.00 2.71
824 842 0.887387 GGCTAAACACCGGCAGAACA 60.887 55.000 0.00 0.00 0.00 3.18
825 843 1.873863 GGCTAAACACCGGCAGAAC 59.126 57.895 0.00 0.00 0.00 3.01
826 844 4.390048 GGCTAAACACCGGCAGAA 57.610 55.556 0.00 0.00 0.00 3.02
833 851 1.170290 AGTGGCAACGGCTAAACACC 61.170 55.000 0.00 0.00 40.87 4.16
834 852 0.040425 CAGTGGCAACGGCTAAACAC 60.040 55.000 0.00 0.00 40.87 3.32
835 853 1.169661 CCAGTGGCAACGGCTAAACA 61.170 55.000 0.00 0.00 40.87 2.83
836 854 0.887387 TCCAGTGGCAACGGCTAAAC 60.887 55.000 3.51 0.00 40.87 2.01
837 855 0.037590 ATCCAGTGGCAACGGCTAAA 59.962 50.000 3.51 0.00 40.87 1.85
838 856 0.676466 CATCCAGTGGCAACGGCTAA 60.676 55.000 3.51 0.00 40.87 3.09
839 857 1.078497 CATCCAGTGGCAACGGCTA 60.078 57.895 3.51 0.00 40.87 3.93
840 858 2.360350 CATCCAGTGGCAACGGCT 60.360 61.111 3.51 0.00 40.87 5.52
841 859 4.120331 GCATCCAGTGGCAACGGC 62.120 66.667 3.51 0.00 42.51 5.68
842 860 2.360350 AGCATCCAGTGGCAACGG 60.360 61.111 3.51 0.00 42.51 4.44
843 861 2.872557 CAGCATCCAGTGGCAACG 59.127 61.111 3.51 0.00 42.51 4.10
844 862 2.570181 GCAGCATCCAGTGGCAAC 59.430 61.111 3.51 0.00 0.00 4.17
845 863 3.057548 CGCAGCATCCAGTGGCAA 61.058 61.111 3.51 0.00 0.00 4.52
876 894 0.038159 CAGAGAGGGACGTCCAACAC 60.038 60.000 34.40 23.69 38.24 3.32
877 895 1.816863 GCAGAGAGGGACGTCCAACA 61.817 60.000 34.40 0.00 38.24 3.33
878 896 1.079750 GCAGAGAGGGACGTCCAAC 60.080 63.158 34.40 25.63 38.24 3.77
879 897 1.533033 TGCAGAGAGGGACGTCCAA 60.533 57.895 34.40 7.55 38.24 3.53
880 898 1.979155 CTGCAGAGAGGGACGTCCA 60.979 63.158 34.40 11.73 38.24 4.02
881 899 0.680280 TACTGCAGAGAGGGACGTCC 60.680 60.000 27.04 27.04 0.00 4.79
882 900 0.736053 CTACTGCAGAGAGGGACGTC 59.264 60.000 23.35 7.13 0.00 4.34
883 901 0.038455 ACTACTGCAGAGAGGGACGT 59.962 55.000 23.35 0.00 0.00 4.34
884 902 1.178276 AACTACTGCAGAGAGGGACG 58.822 55.000 23.35 1.56 0.00 4.79
885 903 3.244249 ACAAAACTACTGCAGAGAGGGAC 60.244 47.826 23.35 0.00 0.00 4.46
886 904 2.972713 ACAAAACTACTGCAGAGAGGGA 59.027 45.455 23.35 0.00 0.00 4.20
887 905 3.409026 ACAAAACTACTGCAGAGAGGG 57.591 47.619 23.35 10.46 0.00 4.30
888 906 4.636249 AGAACAAAACTACTGCAGAGAGG 58.364 43.478 23.35 9.38 0.00 3.69
889 907 5.343593 CGTAGAACAAAACTACTGCAGAGAG 59.656 44.000 23.35 18.76 38.31 3.20
890 908 5.220381 CGTAGAACAAAACTACTGCAGAGA 58.780 41.667 23.35 6.83 38.31 3.10
891 909 4.982916 ACGTAGAACAAAACTACTGCAGAG 59.017 41.667 23.35 15.55 38.31 3.35
892 910 4.940463 ACGTAGAACAAAACTACTGCAGA 58.060 39.130 23.35 2.95 38.31 4.26
893 911 4.743151 TGACGTAGAACAAAACTACTGCAG 59.257 41.667 13.48 13.48 38.31 4.41
894 912 4.684877 TGACGTAGAACAAAACTACTGCA 58.315 39.130 0.00 0.00 38.31 4.41
895 913 4.980434 TCTGACGTAGAACAAAACTACTGC 59.020 41.667 0.00 0.00 38.31 4.40
896 914 6.916387 TCTTCTGACGTAGAACAAAACTACTG 59.084 38.462 0.00 0.00 40.43 2.74
897 915 7.035840 TCTTCTGACGTAGAACAAAACTACT 57.964 36.000 0.00 0.00 40.43 2.57
898 916 7.808856 AGATCTTCTGACGTAGAACAAAACTAC 59.191 37.037 0.00 0.00 40.43 2.73
899 917 7.883217 AGATCTTCTGACGTAGAACAAAACTA 58.117 34.615 0.00 0.00 40.43 2.24
900 918 6.750148 AGATCTTCTGACGTAGAACAAAACT 58.250 36.000 0.00 0.00 40.43 2.66
901 919 6.183359 CGAGATCTTCTGACGTAGAACAAAAC 60.183 42.308 0.00 0.00 40.43 2.43
902 920 5.856986 CGAGATCTTCTGACGTAGAACAAAA 59.143 40.000 0.00 0.00 40.43 2.44
903 921 5.048921 ACGAGATCTTCTGACGTAGAACAAA 60.049 40.000 4.73 0.00 40.43 2.83
904 922 4.454847 ACGAGATCTTCTGACGTAGAACAA 59.545 41.667 4.73 0.00 40.43 2.83
905 923 4.001652 ACGAGATCTTCTGACGTAGAACA 58.998 43.478 4.73 0.00 40.43 3.18
906 924 4.603231 ACGAGATCTTCTGACGTAGAAC 57.397 45.455 4.73 0.00 40.43 3.01
907 925 4.936411 AGAACGAGATCTTCTGACGTAGAA 59.064 41.667 6.81 0.00 43.01 2.10
908 926 4.330347 CAGAACGAGATCTTCTGACGTAGA 59.670 45.833 15.14 0.00 45.15 2.59
909 927 4.583426 CAGAACGAGATCTTCTGACGTAG 58.417 47.826 15.14 2.91 45.15 3.51
910 928 3.181509 GCAGAACGAGATCTTCTGACGTA 60.182 47.826 21.84 0.00 45.15 3.57
911 929 2.414824 GCAGAACGAGATCTTCTGACGT 60.415 50.000 21.84 12.63 45.15 4.34
912 930 2.159448 AGCAGAACGAGATCTTCTGACG 60.159 50.000 21.84 12.05 45.15 4.35
913 931 3.502191 AGCAGAACGAGATCTTCTGAC 57.498 47.619 21.84 14.46 45.15 3.51
914 932 4.240888 CAAAGCAGAACGAGATCTTCTGA 58.759 43.478 21.84 0.00 45.15 3.27
915 933 3.181522 GCAAAGCAGAACGAGATCTTCTG 60.182 47.826 15.71 15.71 45.12 3.02
916 934 2.999355 GCAAAGCAGAACGAGATCTTCT 59.001 45.455 0.00 0.00 0.00 2.85
917 935 2.738846 TGCAAAGCAGAACGAGATCTTC 59.261 45.455 0.00 0.00 33.32 2.87
918 936 2.771089 TGCAAAGCAGAACGAGATCTT 58.229 42.857 0.00 0.00 33.32 2.40
919 937 2.462456 TGCAAAGCAGAACGAGATCT 57.538 45.000 0.00 0.00 33.32 2.75
920 938 3.486542 GGAATGCAAAGCAGAACGAGATC 60.487 47.826 0.00 0.00 43.65 2.75
921 939 2.421424 GGAATGCAAAGCAGAACGAGAT 59.579 45.455 0.00 0.00 43.65 2.75
922 940 1.806542 GGAATGCAAAGCAGAACGAGA 59.193 47.619 0.00 0.00 43.65 4.04
923 941 1.536766 TGGAATGCAAAGCAGAACGAG 59.463 47.619 0.00 0.00 43.65 4.18
924 942 1.603456 TGGAATGCAAAGCAGAACGA 58.397 45.000 0.00 0.00 43.65 3.85
925 943 2.420628 TTGGAATGCAAAGCAGAACG 57.579 45.000 0.00 0.00 43.65 3.95
926 944 3.492011 CAGTTTGGAATGCAAAGCAGAAC 59.508 43.478 0.00 0.00 43.65 3.01
927 945 3.384146 TCAGTTTGGAATGCAAAGCAGAA 59.616 39.130 0.00 0.00 43.65 3.02
928 946 2.957680 TCAGTTTGGAATGCAAAGCAGA 59.042 40.909 0.00 0.00 43.65 4.26
929 947 3.374220 TCAGTTTGGAATGCAAAGCAG 57.626 42.857 0.00 0.00 43.65 4.24
1091 1109 2.815647 GAGGAAAGGAGGTGCGCG 60.816 66.667 0.00 0.00 0.00 6.86
1135 1153 1.568118 GGGGTTCAGGAAATCGGGGA 61.568 60.000 0.00 0.00 0.00 4.81
1258 1276 0.599204 CGGTAATTGGCGGCGATACT 60.599 55.000 12.98 0.00 0.00 2.12
1280 1298 1.962807 TCCAAACCCTAAGTCGAACGA 59.037 47.619 0.00 0.00 0.00 3.85
1554 1572 1.297664 GCCAATGCTGAGCTCTACAG 58.702 55.000 16.19 5.87 38.27 2.74
1564 1582 0.036765 ACTGCCAAATGCCAATGCTG 60.037 50.000 0.00 0.00 40.16 4.41
1797 1815 7.042725 ACAATACATAAAGACATGATCGTTCCG 60.043 37.037 0.00 0.00 30.97 4.30
1900 1918 2.428544 AACCACTGTTACCTGCAACA 57.571 45.000 0.00 0.00 36.94 3.33
1983 2001 4.640201 ACACTGTGTAAGCTGTTGTGAATT 59.360 37.500 12.53 0.00 0.00 2.17
2016 2034 7.302524 TCTCGTGTTTAAAGGTTGAATAATGC 58.697 34.615 0.00 0.00 0.00 3.56
2141 2160 4.704540 TGTAGATTGGTGGCAATAACAAGG 59.295 41.667 0.00 0.00 0.00 3.61
2355 2374 9.045223 CATCGGATAGTCACATTTGATTTAGAA 57.955 33.333 0.00 0.00 33.11 2.10
2492 2514 3.438087 ACATTTGGATGCAGAGAAACTCG 59.562 43.478 0.00 0.00 36.72 4.18
2578 2600 5.355350 GGGATCTGTGTTTTAGATGAACTGG 59.645 44.000 0.00 0.00 35.14 4.00
2641 2663 6.204495 GTGATCTTTCCTGATATCAGCCTTTC 59.796 42.308 24.81 15.88 42.47 2.62
2647 2669 6.874664 CCAGATGTGATCTTTCCTGATATCAG 59.125 42.308 23.53 23.53 39.56 2.90
2735 2757 3.904136 AGCAGCGACAATTAATATGGC 57.096 42.857 0.00 0.00 0.00 4.40
2746 2787 5.008217 ACAAAATTGTACTAAAGCAGCGACA 59.992 36.000 0.00 0.00 40.16 4.35
2747 2788 5.449304 ACAAAATTGTACTAAAGCAGCGAC 58.551 37.500 0.00 0.00 40.16 5.19
2748 2789 5.682943 ACAAAATTGTACTAAAGCAGCGA 57.317 34.783 0.00 0.00 40.16 4.93
2791 2832 5.065988 CCCTCCGATTCAAATTAATTGTCGT 59.934 40.000 16.99 2.23 40.11 4.34
2881 2922 3.899052 TGTTACTCCCCATTAAGACCG 57.101 47.619 0.00 0.00 0.00 4.79
2965 3006 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2966 3007 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2967 3008 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2968 3009 6.267014 CAGACTTATATTTAGGAACGGAGGGA 59.733 42.308 0.00 0.00 0.00 4.20
2969 3010 6.041751 ACAGACTTATATTTAGGAACGGAGGG 59.958 42.308 0.00 0.00 0.00 4.30
2970 3011 7.052142 ACAGACTTATATTTAGGAACGGAGG 57.948 40.000 0.00 0.00 0.00 4.30
2971 3012 8.943909 AAACAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3031 3072 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
3032 3073 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
3033 3074 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
3046 3087 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3047 3088 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3048 3089 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3049 3090 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3050 3091 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3051 3092 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3052 3093 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3053 3094 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3054 3095 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3055 3096 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3056 3097 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3057 3098 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3058 3099 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3059 3100 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
3060 3101 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
3061 3102 3.007074 TGTGGACTACATACGGAGCAAAA 59.993 43.478 0.00 0.00 33.42 2.44
3062 3103 2.563620 TGTGGACTACATACGGAGCAAA 59.436 45.455 0.00 0.00 33.42 3.68
3063 3104 2.172679 TGTGGACTACATACGGAGCAA 58.827 47.619 0.00 0.00 33.42 3.91
3064 3105 1.842052 TGTGGACTACATACGGAGCA 58.158 50.000 0.00 0.00 33.42 4.26
3076 3117 9.660180 GTCTTTTTAGAGATTCTAATGTGGACT 57.340 33.333 0.00 0.00 38.60 3.85
3077 3118 9.660180 AGTCTTTTTAGAGATTCTAATGTGGAC 57.340 33.333 0.00 6.54 38.60 4.02
3099 3140 9.495382 ACTCCCTCTGTTTCTAAATATAAGTCT 57.505 33.333 0.00 0.00 0.00 3.24
3105 3146 9.939424 AGTACTACTCCCTCTGTTTCTAAATAT 57.061 33.333 0.00 0.00 0.00 1.28
3106 3147 9.765295 AAGTACTACTCCCTCTGTTTCTAAATA 57.235 33.333 0.00 0.00 0.00 1.40
3107 3148 8.667592 AAGTACTACTCCCTCTGTTTCTAAAT 57.332 34.615 0.00 0.00 0.00 1.40
3108 3149 8.488308 AAAGTACTACTCCCTCTGTTTCTAAA 57.512 34.615 0.00 0.00 0.00 1.85
3109 3150 9.765295 ATAAAGTACTACTCCCTCTGTTTCTAA 57.235 33.333 0.00 0.00 0.00 2.10
3110 3151 9.765295 AATAAAGTACTACTCCCTCTGTTTCTA 57.235 33.333 0.00 0.00 0.00 2.10
3111 3152 8.667592 AATAAAGTACTACTCCCTCTGTTTCT 57.332 34.615 0.00 0.00 0.00 2.52
3114 3155 9.544579 ACTAAATAAAGTACTACTCCCTCTGTT 57.455 33.333 0.00 0.00 0.00 3.16
3115 3156 8.968969 CACTAAATAAAGTACTACTCCCTCTGT 58.031 37.037 0.00 0.00 0.00 3.41
3116 3157 9.186837 TCACTAAATAAAGTACTACTCCCTCTG 57.813 37.037 0.00 0.00 0.00 3.35
3117 3158 9.187996 GTCACTAAATAAAGTACTACTCCCTCT 57.812 37.037 0.00 0.00 0.00 3.69
3118 3159 8.964772 TGTCACTAAATAAAGTACTACTCCCTC 58.035 37.037 0.00 0.00 0.00 4.30
3119 3160 8.890410 TGTCACTAAATAAAGTACTACTCCCT 57.110 34.615 0.00 0.00 0.00 4.20
3120 3161 9.530633 CATGTCACTAAATAAAGTACTACTCCC 57.469 37.037 0.00 0.00 0.00 4.30
3121 3162 9.032420 GCATGTCACTAAATAAAGTACTACTCC 57.968 37.037 0.00 0.00 0.00 3.85
3122 3163 9.582431 TGCATGTCACTAAATAAAGTACTACTC 57.418 33.333 0.00 0.00 0.00 2.59
3254 3295 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
3290 3331 2.632537 ACTCCCACTATGAGGTTGGTT 58.367 47.619 0.00 0.00 34.06 3.67
3313 3354 6.183360 TGGGATGCGCTATATTACTAGCTAAG 60.183 42.308 9.73 0.00 41.61 2.18
3342 3874 4.520492 ACACCTCCTCATTAAGCAAACTTG 59.480 41.667 0.00 0.00 36.57 3.16
3354 3886 0.478072 TGCCACAAACACCTCCTCAT 59.522 50.000 0.00 0.00 0.00 2.90
3355 3887 0.257328 TTGCCACAAACACCTCCTCA 59.743 50.000 0.00 0.00 0.00 3.86
3356 3888 0.668535 GTTGCCACAAACACCTCCTC 59.331 55.000 0.00 0.00 0.00 3.71
3357 3889 0.033601 TGTTGCCACAAACACCTCCT 60.034 50.000 0.00 0.00 35.16 3.69
3358 3890 1.039856 ATGTTGCCACAAACACCTCC 58.960 50.000 0.00 0.00 42.56 4.30
3454 3998 5.749109 GCAGAGAGTAACATATGTGTGGTAC 59.251 44.000 9.63 8.13 41.52 3.34
3455 3999 5.656859 AGCAGAGAGTAACATATGTGTGGTA 59.343 40.000 9.63 0.00 38.92 3.25
3456 4000 4.467795 AGCAGAGAGTAACATATGTGTGGT 59.532 41.667 9.63 0.00 38.92 4.16
3501 4045 9.985730 TGAAACGAAGAGAGGTTAAATTACTTA 57.014 29.630 0.00 0.00 0.00 2.24
3618 4162 7.177878 AGAATGAATACCACATCCACTTCTTT 58.822 34.615 0.00 0.00 0.00 2.52
3703 4247 9.273016 CAAGGATATACGAATTGTTTGTAGGAT 57.727 33.333 0.00 0.00 33.24 3.24
3704 4248 8.262227 ACAAGGATATACGAATTGTTTGTAGGA 58.738 33.333 0.00 0.00 33.24 2.94
3751 4295 3.003740 CTGGAGCAGCATTAGCCTC 57.996 57.895 0.00 0.00 43.56 4.70
3788 4332 7.655328 ACTGAATAATAAGCTCTATGTGCTGTC 59.345 37.037 0.00 0.00 41.03 3.51
3889 4433 6.574350 AGGAGGAGAAAGTAAACATACATCG 58.426 40.000 0.00 0.00 0.00 3.84
3948 4492 3.436704 ACATGTAACAGGCGAGAATGTTG 59.563 43.478 0.00 0.00 39.83 3.33
4015 4559 3.860641 TCTTGCATCGACTTCATTAGCA 58.139 40.909 0.00 0.00 0.00 3.49
4118 4662 0.324614 TCCCATGTACACAGTGCAGG 59.675 55.000 0.00 0.00 30.87 4.85
4142 4686 2.285256 CGCAAGTAGACACGAATGATGC 60.285 50.000 0.00 0.00 0.00 3.91
4153 4697 3.607777 CGAGAGGTCGCAAGTAGAC 57.392 57.895 0.00 0.00 39.88 2.59
4199 4743 9.962783 CTTGATGTTGAAGAAGAAGAAGAAAAT 57.037 29.630 0.00 0.00 0.00 1.82
4200 4744 8.960591 ACTTGATGTTGAAGAAGAAGAAGAAAA 58.039 29.630 0.00 0.00 0.00 2.29
4201 4745 8.511604 ACTTGATGTTGAAGAAGAAGAAGAAA 57.488 30.769 0.00 0.00 0.00 2.52
4202 4746 7.770433 TGACTTGATGTTGAAGAAGAAGAAGAA 59.230 33.333 0.00 0.00 0.00 2.52
4203 4747 7.275183 TGACTTGATGTTGAAGAAGAAGAAGA 58.725 34.615 0.00 0.00 0.00 2.87
4204 4748 7.488187 TGACTTGATGTTGAAGAAGAAGAAG 57.512 36.000 0.00 0.00 0.00 2.85
4205 4749 7.864108 TTGACTTGATGTTGAAGAAGAAGAA 57.136 32.000 0.00 0.00 0.00 2.52
4206 4750 7.864108 TTTGACTTGATGTTGAAGAAGAAGA 57.136 32.000 0.00 0.00 0.00 2.87
4207 4751 9.525409 AATTTTGACTTGATGTTGAAGAAGAAG 57.475 29.630 0.00 0.00 0.00 2.85
4210 4754 9.956720 ACTAATTTTGACTTGATGTTGAAGAAG 57.043 29.630 0.00 0.00 0.00 2.85
4213 4757 9.831737 CCTACTAATTTTGACTTGATGTTGAAG 57.168 33.333 0.00 0.00 0.00 3.02
4214 4758 8.792633 CCCTACTAATTTTGACTTGATGTTGAA 58.207 33.333 0.00 0.00 0.00 2.69
4215 4759 8.160765 TCCCTACTAATTTTGACTTGATGTTGA 58.839 33.333 0.00 0.00 0.00 3.18
4216 4760 8.335532 TCCCTACTAATTTTGACTTGATGTTG 57.664 34.615 0.00 0.00 0.00 3.33
4217 4761 8.164070 ACTCCCTACTAATTTTGACTTGATGTT 58.836 33.333 0.00 0.00 0.00 2.71
4218 4762 7.690256 ACTCCCTACTAATTTTGACTTGATGT 58.310 34.615 0.00 0.00 0.00 3.06
4219 4763 9.099454 GTACTCCCTACTAATTTTGACTTGATG 57.901 37.037 0.00 0.00 0.00 3.07
4220 4764 9.047947 AGTACTCCCTACTAATTTTGACTTGAT 57.952 33.333 0.00 0.00 33.53 2.57
4221 4765 8.431910 AGTACTCCCTACTAATTTTGACTTGA 57.568 34.615 0.00 0.00 33.53 3.02
4239 4783 3.882288 CGGGGAAACTAGACTAGTACTCC 59.118 52.174 23.79 23.79 38.26 3.85
4240 4784 3.314913 GCGGGGAAACTAGACTAGTACTC 59.685 52.174 15.51 14.01 38.26 2.59
4241 4785 3.286353 GCGGGGAAACTAGACTAGTACT 58.714 50.000 15.51 6.24 38.26 2.73
4242 4786 3.019564 TGCGGGGAAACTAGACTAGTAC 58.980 50.000 15.51 12.12 38.26 2.73
4269 4813 8.674263 ACGCAACTAGACTAGTATACTATTGT 57.326 34.615 15.51 8.58 38.26 2.71
4270 4814 8.771766 TGACGCAACTAGACTAGTATACTATTG 58.228 37.037 15.51 13.40 38.26 1.90
4299 4848 3.324846 AGCAGGGATAATTCATACGCAGA 59.675 43.478 0.00 0.00 0.00 4.26
4300 4849 3.668447 AGCAGGGATAATTCATACGCAG 58.332 45.455 0.00 0.00 0.00 5.18
4320 4869 2.742589 GTTTTCCTTCCTGTTAGGCGAG 59.257 50.000 0.00 0.00 34.61 5.03
4322 4871 2.484264 CAGTTTTCCTTCCTGTTAGGCG 59.516 50.000 0.00 0.00 34.61 5.52
4327 4876 5.223449 TCGTATCAGTTTTCCTTCCTGTT 57.777 39.130 0.00 0.00 0.00 3.16
4332 4881 7.778470 AGATGATTCGTATCAGTTTTCCTTC 57.222 36.000 10.58 1.20 43.70 3.46
4404 4953 0.325602 TTTAAGGTCGCCCGTTGGAT 59.674 50.000 0.00 0.00 35.12 3.41
4419 4968 5.818336 TCAGACAAAACAGACGTCCATTTAA 59.182 36.000 13.01 0.00 0.00 1.52
4420 4969 5.361427 TCAGACAAAACAGACGTCCATTTA 58.639 37.500 13.01 0.00 0.00 1.40
4424 4973 2.971660 TCAGACAAAACAGACGTCCA 57.028 45.000 13.01 0.00 0.00 4.02
4430 4979 5.124776 ACGGACAAAATTCAGACAAAACAGA 59.875 36.000 0.00 0.00 0.00 3.41
4432 4981 5.317733 ACGGACAAAATTCAGACAAAACA 57.682 34.783 0.00 0.00 0.00 2.83
4458 5007 3.309506 CCGCCCATTTGCCCAACA 61.310 61.111 0.00 0.00 0.00 3.33
4461 5010 4.612279 ACACCGCCCATTTGCCCA 62.612 61.111 0.00 0.00 0.00 5.36
4500 5066 2.264480 CGTCATCCGTCTTGGGCA 59.736 61.111 0.00 0.00 38.76 5.36
4507 5073 0.872021 GACCAGATGCGTCATCCGTC 60.872 60.000 8.99 14.62 41.36 4.79
4508 5074 1.141881 GACCAGATGCGTCATCCGT 59.858 57.895 8.99 11.09 41.36 4.69
4512 5078 1.153289 GGCAGACCAGATGCGTCAT 60.153 57.895 8.99 0.00 44.80 3.06
4513 5079 2.265739 GGCAGACCAGATGCGTCA 59.734 61.111 8.99 0.00 44.80 4.35
4536 5102 0.174845 CTACATTTCGCCTCCGGTCA 59.825 55.000 0.00 0.00 34.56 4.02
4541 5107 2.674796 AGTGTCTACATTTCGCCTCC 57.325 50.000 0.00 0.00 0.00 4.30
4547 5113 6.721321 TCGGTTCAAAAAGTGTCTACATTTC 58.279 36.000 0.00 0.00 28.42 2.17
4746 5312 0.814010 ACGTCTTGGTTGAGCACACC 60.814 55.000 0.00 0.00 0.00 4.16
4763 5329 6.072175 TCCATCTTATTTCCAACTCCAAAACG 60.072 38.462 0.00 0.00 0.00 3.60
4781 5347 4.664688 AGAGTTCACCCAATTCCATCTT 57.335 40.909 0.00 0.00 0.00 2.40
4827 5415 4.646040 TCAGGATGAAAATGTTATGCCTGG 59.354 41.667 0.00 0.00 45.97 4.45
4844 5432 6.099845 ACGACTAAGGGTTTGAATATCAGGAT 59.900 38.462 0.00 0.00 0.00 3.24
4845 5433 5.424252 ACGACTAAGGGTTTGAATATCAGGA 59.576 40.000 0.00 0.00 0.00 3.86
4864 5452 4.715713 TGACTACATCTATGGCTACGACT 58.284 43.478 0.00 0.00 0.00 4.18
4866 5454 5.881777 GATGACTACATCTATGGCTACGA 57.118 43.478 0.00 0.00 46.47 3.43
4891 5479 4.478206 AACATGATCGTTGAGGATGAGT 57.522 40.909 0.00 0.00 0.00 3.41
4922 5510 3.589988 GGAGGTGATGACTACTTGTGTG 58.410 50.000 0.00 0.00 0.00 3.82
4929 5517 4.287766 AGTTTTGGGAGGTGATGACTAC 57.712 45.455 0.00 0.00 0.00 2.73
4944 5532 3.997021 ACATAGAGCACCGAGAAGTTTTG 59.003 43.478 0.00 0.00 0.00 2.44
4948 5536 2.425312 CTGACATAGAGCACCGAGAAGT 59.575 50.000 0.00 0.00 0.00 3.01
4951 5539 1.745653 CACTGACATAGAGCACCGAGA 59.254 52.381 0.00 0.00 0.00 4.04
4956 5544 1.649664 CCTGCACTGACATAGAGCAC 58.350 55.000 0.00 0.00 46.03 4.40
4962 5550 1.347062 TGACACCCTGCACTGACATA 58.653 50.000 0.00 0.00 0.00 2.29
4984 5572 5.696270 GTGCTTCAATATCGATGTGGTATCA 59.304 40.000 8.54 0.00 0.00 2.15
4991 5579 5.878332 TTGTTGTGCTTCAATATCGATGT 57.122 34.783 8.54 0.00 38.38 3.06
4992 5580 6.803320 ACTTTTGTTGTGCTTCAATATCGATG 59.197 34.615 8.54 0.00 38.38 3.84
5010 5598 1.530323 GATGTGGGGCGTACTTTTGT 58.470 50.000 0.00 0.00 0.00 2.83
5017 5605 0.031917 TAGGAAGGATGTGGGGCGTA 60.032 55.000 0.00 0.00 0.00 4.42
5022 5610 3.892588 GAGACTACTAGGAAGGATGTGGG 59.107 52.174 0.00 0.00 0.00 4.61
5048 5636 1.490490 AGACAGAGGTTTGTCCAGCAA 59.510 47.619 2.76 0.00 46.81 3.91
5055 5643 3.252554 AGAGAGGAGACAGAGGTTTGT 57.747 47.619 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.