Multiple sequence alignment - TraesCS3A01G203600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G203600 chr3A 100.000 2291 0 0 1 2291 352873288 352870998 0.000000e+00 4231
1 TraesCS3A01G203600 chr3A 95.312 384 17 1 1 383 352976714 352976331 1.950000e-170 608
2 TraesCS3A01G203600 chr7A 95.763 1605 65 3 689 2291 424619516 424621119 0.000000e+00 2584
3 TraesCS3A01G203600 chr7A 95.253 1601 74 2 693 2291 424611585 424613185 0.000000e+00 2534
4 TraesCS3A01G203600 chr7A 90.745 1610 135 13 689 2291 292773930 292775532 0.000000e+00 2135
5 TraesCS3A01G203600 chr7A 90.515 1613 134 16 689 2291 292781974 292783577 0.000000e+00 2113
6 TraesCS3A01G203600 chr7A 94.531 384 20 1 1 383 407518254 407518637 1.960000e-165 592
7 TraesCS3A01G203600 chr1A 95.327 1605 73 2 689 2291 202026462 202024858 0.000000e+00 2547
8 TraesCS3A01G203600 chr1A 95.140 1605 65 6 689 2291 202033239 202031646 0.000000e+00 2519
9 TraesCS3A01G203600 chr1A 94.241 382 21 1 4 384 82930492 82930873 1.180000e-162 582
10 TraesCS3A01G203600 chr1A 94.026 385 20 3 4 386 266906181 266905798 4.240000e-162 580
11 TraesCS3A01G203600 chr5A 94.829 1605 81 2 689 2291 266460731 266459127 0.000000e+00 2503
12 TraesCS3A01G203600 chr5A 94.393 1605 88 2 689 2291 266468700 266467096 0.000000e+00 2464
13 TraesCS3A01G203600 chr5A 94.488 381 20 1 4 383 369608319 369607939 9.120000e-164 586
14 TraesCS3A01G203600 chr4A 90.435 1610 140 13 689 2291 489644620 489646222 0.000000e+00 2108
15 TraesCS3A01G203600 chr4A 85.126 753 82 19 1563 2290 508098226 508098973 0.000000e+00 743
16 TraesCS3A01G203600 chr2A 94.256 383 21 1 4 385 181210836 181211218 3.280000e-163 584
17 TraesCS3A01G203600 chr6A 94.026 385 20 3 1 383 137833241 137832858 4.240000e-162 580
18 TraesCS3A01G203600 chr6A 94.010 384 22 1 1 383 352772580 352772963 4.240000e-162 580
19 TraesCS3A01G203600 chr3D 94.010 384 22 1 1 383 94837342 94837725 4.240000e-162 580
20 TraesCS3A01G203600 chr7B 86.000 100 12 2 562 660 463401896 463401798 3.110000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G203600 chr3A 352870998 352873288 2290 True 4231 4231 100.000 1 2291 1 chr3A.!!$R1 2290
1 TraesCS3A01G203600 chr7A 424619516 424621119 1603 False 2584 2584 95.763 689 2291 1 chr7A.!!$F5 1602
2 TraesCS3A01G203600 chr7A 424611585 424613185 1600 False 2534 2534 95.253 693 2291 1 chr7A.!!$F4 1598
3 TraesCS3A01G203600 chr7A 292773930 292775532 1602 False 2135 2135 90.745 689 2291 1 chr7A.!!$F1 1602
4 TraesCS3A01G203600 chr7A 292781974 292783577 1603 False 2113 2113 90.515 689 2291 1 chr7A.!!$F2 1602
5 TraesCS3A01G203600 chr1A 202024858 202026462 1604 True 2547 2547 95.327 689 2291 1 chr1A.!!$R1 1602
6 TraesCS3A01G203600 chr1A 202031646 202033239 1593 True 2519 2519 95.140 689 2291 1 chr1A.!!$R2 1602
7 TraesCS3A01G203600 chr5A 266459127 266460731 1604 True 2503 2503 94.829 689 2291 1 chr5A.!!$R1 1602
8 TraesCS3A01G203600 chr5A 266467096 266468700 1604 True 2464 2464 94.393 689 2291 1 chr5A.!!$R2 1602
9 TraesCS3A01G203600 chr4A 489644620 489646222 1602 False 2108 2108 90.435 689 2291 1 chr4A.!!$F1 1602
10 TraesCS3A01G203600 chr4A 508098226 508098973 747 False 743 743 85.126 1563 2290 1 chr4A.!!$F2 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.032017 CCCTGAGGGTGCCTACTACT 60.032 60.0 10.09 0.0 38.25 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1312 1314 0.179234 TCACTCAACGGCCTTCAACA 59.821 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.906055 AGTCCAGGAGCCAGATGT 57.094 55.556 0.00 0.00 0.00 3.06
18 19 2.601664 AGTCCAGGAGCCAGATGTC 58.398 57.895 0.00 0.00 0.00 3.06
19 20 0.252421 AGTCCAGGAGCCAGATGTCA 60.252 55.000 0.00 0.00 0.00 3.58
20 21 0.107945 GTCCAGGAGCCAGATGTCAC 60.108 60.000 0.00 0.00 0.00 3.67
21 22 1.222936 CCAGGAGCCAGATGTCACC 59.777 63.158 0.00 0.00 0.00 4.02
22 23 1.556373 CCAGGAGCCAGATGTCACCA 61.556 60.000 0.00 0.00 0.00 4.17
23 24 0.392193 CAGGAGCCAGATGTCACCAC 60.392 60.000 0.00 0.00 0.00 4.16
24 25 1.078143 GGAGCCAGATGTCACCACC 60.078 63.158 0.00 0.00 0.00 4.61
25 26 1.679311 GAGCCAGATGTCACCACCA 59.321 57.895 0.00 0.00 0.00 4.17
26 27 0.036732 GAGCCAGATGTCACCACCAA 59.963 55.000 0.00 0.00 0.00 3.67
27 28 0.250901 AGCCAGATGTCACCACCAAC 60.251 55.000 0.00 0.00 0.00 3.77
28 29 1.577328 GCCAGATGTCACCACCAACG 61.577 60.000 0.00 0.00 0.00 4.10
29 30 1.577328 CCAGATGTCACCACCAACGC 61.577 60.000 0.00 0.00 0.00 4.84
30 31 0.603707 CAGATGTCACCACCAACGCT 60.604 55.000 0.00 0.00 0.00 5.07
31 32 0.108585 AGATGTCACCACCAACGCTT 59.891 50.000 0.00 0.00 0.00 4.68
32 33 1.346395 AGATGTCACCACCAACGCTTA 59.654 47.619 0.00 0.00 0.00 3.09
33 34 1.463444 GATGTCACCACCAACGCTTAC 59.537 52.381 0.00 0.00 0.00 2.34
34 35 0.466543 TGTCACCACCAACGCTTACT 59.533 50.000 0.00 0.00 0.00 2.24
35 36 1.687660 TGTCACCACCAACGCTTACTA 59.312 47.619 0.00 0.00 0.00 1.82
36 37 2.064014 GTCACCACCAACGCTTACTAC 58.936 52.381 0.00 0.00 0.00 2.73
37 38 1.965643 TCACCACCAACGCTTACTACT 59.034 47.619 0.00 0.00 0.00 2.57
38 39 3.057315 GTCACCACCAACGCTTACTACTA 60.057 47.826 0.00 0.00 0.00 1.82
39 40 3.057315 TCACCACCAACGCTTACTACTAC 60.057 47.826 0.00 0.00 0.00 2.73
40 41 2.232208 ACCACCAACGCTTACTACTACC 59.768 50.000 0.00 0.00 0.00 3.18
41 42 2.417787 CCACCAACGCTTACTACTACCC 60.418 54.545 0.00 0.00 0.00 3.69
42 43 2.494870 CACCAACGCTTACTACTACCCT 59.505 50.000 0.00 0.00 0.00 4.34
43 44 2.494870 ACCAACGCTTACTACTACCCTG 59.505 50.000 0.00 0.00 0.00 4.45
44 45 2.756760 CCAACGCTTACTACTACCCTGA 59.243 50.000 0.00 0.00 0.00 3.86
45 46 3.181489 CCAACGCTTACTACTACCCTGAG 60.181 52.174 0.00 0.00 0.00 3.35
46 47 2.652590 ACGCTTACTACTACCCTGAGG 58.347 52.381 0.00 0.00 40.04 3.86
57 58 2.517609 CCCTGAGGGTGCCTACTAC 58.482 63.158 10.09 0.00 38.25 2.73
58 59 0.032017 CCCTGAGGGTGCCTACTACT 60.032 60.000 10.09 0.00 38.25 2.57
59 60 1.217183 CCCTGAGGGTGCCTACTACTA 59.783 57.143 10.09 0.00 38.25 1.82
60 61 2.158295 CCCTGAGGGTGCCTACTACTAT 60.158 54.545 10.09 0.00 38.25 2.12
61 62 2.894126 CCTGAGGGTGCCTACTACTATG 59.106 54.545 0.00 0.00 31.76 2.23
62 63 3.567397 CTGAGGGTGCCTACTACTATGT 58.433 50.000 0.00 0.00 31.76 2.29
63 64 3.296854 TGAGGGTGCCTACTACTATGTG 58.703 50.000 0.00 0.00 31.76 3.21
64 65 3.053170 TGAGGGTGCCTACTACTATGTGA 60.053 47.826 0.00 0.00 31.76 3.58
65 66 4.153411 GAGGGTGCCTACTACTATGTGAT 58.847 47.826 0.00 0.00 31.76 3.06
66 67 3.898123 AGGGTGCCTACTACTATGTGATG 59.102 47.826 0.00 0.00 28.47 3.07
67 68 3.895656 GGGTGCCTACTACTATGTGATGA 59.104 47.826 0.00 0.00 0.00 2.92
68 69 4.262079 GGGTGCCTACTACTATGTGATGAC 60.262 50.000 0.00 0.00 0.00 3.06
69 70 4.262079 GGTGCCTACTACTATGTGATGACC 60.262 50.000 0.00 0.00 0.00 4.02
70 71 4.341235 GTGCCTACTACTATGTGATGACCA 59.659 45.833 0.00 0.00 0.00 4.02
71 72 4.341235 TGCCTACTACTATGTGATGACCAC 59.659 45.833 0.00 0.00 45.88 4.16
72 73 4.585162 GCCTACTACTATGTGATGACCACT 59.415 45.833 0.00 0.00 45.86 4.00
73 74 5.508153 GCCTACTACTATGTGATGACCACTG 60.508 48.000 0.00 0.00 45.86 3.66
74 75 5.828328 CCTACTACTATGTGATGACCACTGA 59.172 44.000 0.00 0.00 45.86 3.41
75 76 5.584253 ACTACTATGTGATGACCACTGAC 57.416 43.478 0.00 0.00 45.86 3.51
76 77 3.510388 ACTATGTGATGACCACTGACG 57.490 47.619 0.00 0.00 45.86 4.35
77 78 3.089284 ACTATGTGATGACCACTGACGA 58.911 45.455 0.00 0.00 45.86 4.20
78 79 2.370281 ATGTGATGACCACTGACGAC 57.630 50.000 0.00 0.00 45.86 4.34
79 80 0.317160 TGTGATGACCACTGACGACC 59.683 55.000 0.00 0.00 45.86 4.79
80 81 0.317160 GTGATGACCACTGACGACCA 59.683 55.000 0.00 0.00 42.44 4.02
81 82 4.229432 TGTGATGACCACTGACGACCAG 62.229 54.545 7.77 7.77 45.86 4.00
92 93 2.683867 CTGACGACCAGGAGTAGTTAGG 59.316 54.545 0.00 0.00 39.23 2.69
93 94 2.306805 TGACGACCAGGAGTAGTTAGGA 59.693 50.000 0.00 0.00 34.05 2.94
94 95 2.944349 GACGACCAGGAGTAGTTAGGAG 59.056 54.545 0.00 0.00 34.05 3.69
95 96 2.299521 CGACCAGGAGTAGTTAGGAGG 58.700 57.143 0.00 0.00 0.00 4.30
96 97 2.033372 GACCAGGAGTAGTTAGGAGGC 58.967 57.143 0.00 0.00 0.00 4.70
97 98 1.646977 ACCAGGAGTAGTTAGGAGGCT 59.353 52.381 0.00 0.00 0.00 4.58
98 99 2.312390 CCAGGAGTAGTTAGGAGGCTC 58.688 57.143 5.78 5.78 0.00 4.70
99 100 2.312390 CAGGAGTAGTTAGGAGGCTCC 58.688 57.143 26.42 26.42 44.37 4.70
100 101 1.930914 AGGAGTAGTTAGGAGGCTCCA 59.069 52.381 33.86 17.81 45.92 3.86
101 102 2.315155 AGGAGTAGTTAGGAGGCTCCAA 59.685 50.000 33.86 22.21 45.92 3.53
102 103 2.696187 GGAGTAGTTAGGAGGCTCCAAG 59.304 54.545 33.86 0.00 43.70 3.61
103 104 2.696187 GAGTAGTTAGGAGGCTCCAAGG 59.304 54.545 33.86 0.00 39.61 3.61
104 105 1.139256 GTAGTTAGGAGGCTCCAAGGC 59.861 57.143 33.86 20.07 39.61 4.35
105 106 0.547712 AGTTAGGAGGCTCCAAGGCA 60.548 55.000 33.86 11.53 44.19 4.75
106 107 0.107459 GTTAGGAGGCTCCAAGGCAG 60.107 60.000 33.86 0.00 44.19 4.85
107 108 1.274703 TTAGGAGGCTCCAAGGCAGG 61.275 60.000 33.86 0.00 44.19 4.85
108 109 2.181523 TAGGAGGCTCCAAGGCAGGA 62.182 60.000 33.86 6.80 44.19 3.86
127 128 2.566824 GGCCTTGCCTTTTCGATCA 58.433 52.632 0.00 0.00 46.69 2.92
128 129 1.106285 GGCCTTGCCTTTTCGATCAT 58.894 50.000 0.00 0.00 46.69 2.45
129 130 1.478105 GGCCTTGCCTTTTCGATCATT 59.522 47.619 0.00 0.00 46.69 2.57
130 131 2.533266 GCCTTGCCTTTTCGATCATTG 58.467 47.619 0.00 0.00 0.00 2.82
131 132 2.094545 GCCTTGCCTTTTCGATCATTGT 60.095 45.455 0.00 0.00 0.00 2.71
132 133 3.614870 GCCTTGCCTTTTCGATCATTGTT 60.615 43.478 0.00 0.00 0.00 2.83
133 134 3.922240 CCTTGCCTTTTCGATCATTGTTG 59.078 43.478 0.00 0.00 0.00 3.33
134 135 2.945278 TGCCTTTTCGATCATTGTTGC 58.055 42.857 0.00 0.00 0.00 4.17
135 136 2.557924 TGCCTTTTCGATCATTGTTGCT 59.442 40.909 0.00 0.00 0.00 3.91
136 137 3.005684 TGCCTTTTCGATCATTGTTGCTT 59.994 39.130 0.00 0.00 0.00 3.91
137 138 3.989817 GCCTTTTCGATCATTGTTGCTTT 59.010 39.130 0.00 0.00 0.00 3.51
138 139 4.448732 GCCTTTTCGATCATTGTTGCTTTT 59.551 37.500 0.00 0.00 0.00 2.27
139 140 5.613142 GCCTTTTCGATCATTGTTGCTTTTG 60.613 40.000 0.00 0.00 0.00 2.44
140 141 5.463061 CCTTTTCGATCATTGTTGCTTTTGT 59.537 36.000 0.00 0.00 0.00 2.83
141 142 5.886715 TTTCGATCATTGTTGCTTTTGTG 57.113 34.783 0.00 0.00 0.00 3.33
142 143 3.307674 TCGATCATTGTTGCTTTTGTGC 58.692 40.909 0.00 0.00 0.00 4.57
143 144 3.004629 TCGATCATTGTTGCTTTTGTGCT 59.995 39.130 0.00 0.00 0.00 4.40
144 145 4.215185 TCGATCATTGTTGCTTTTGTGCTA 59.785 37.500 0.00 0.00 0.00 3.49
145 146 4.556135 CGATCATTGTTGCTTTTGTGCTAG 59.444 41.667 0.00 0.00 0.00 3.42
146 147 3.641648 TCATTGTTGCTTTTGTGCTAGC 58.358 40.909 8.10 8.10 37.89 3.42
147 148 2.507339 TTGTTGCTTTTGTGCTAGCC 57.493 45.000 13.29 4.15 36.56 3.93
148 149 1.691196 TGTTGCTTTTGTGCTAGCCT 58.309 45.000 13.29 0.00 36.56 4.58
149 150 2.031120 TGTTGCTTTTGTGCTAGCCTT 58.969 42.857 13.29 0.00 36.56 4.35
150 151 2.034558 TGTTGCTTTTGTGCTAGCCTTC 59.965 45.455 13.29 3.48 36.56 3.46
151 152 2.276732 TGCTTTTGTGCTAGCCTTCT 57.723 45.000 13.29 0.00 36.56 2.85
152 153 2.586425 TGCTTTTGTGCTAGCCTTCTT 58.414 42.857 13.29 0.00 36.56 2.52
153 154 3.750371 TGCTTTTGTGCTAGCCTTCTTA 58.250 40.909 13.29 0.00 36.56 2.10
154 155 4.141287 TGCTTTTGTGCTAGCCTTCTTAA 58.859 39.130 13.29 0.00 36.56 1.85
155 156 4.216257 TGCTTTTGTGCTAGCCTTCTTAAG 59.784 41.667 13.29 9.25 36.56 1.85
169 170 6.877611 CCTTCTTAAGGCAGACTTGTTTAA 57.122 37.500 0.00 0.00 42.78 1.52
170 171 6.669278 CCTTCTTAAGGCAGACTTGTTTAAC 58.331 40.000 0.00 0.00 42.78 2.01
171 172 6.486993 CCTTCTTAAGGCAGACTTGTTTAACT 59.513 38.462 0.00 0.00 42.78 2.24
172 173 7.013369 CCTTCTTAAGGCAGACTTGTTTAACTT 59.987 37.037 0.00 0.00 42.78 2.66
173 174 8.967664 TTCTTAAGGCAGACTTGTTTAACTTA 57.032 30.769 0.00 0.00 40.37 2.24
174 175 9.569122 TTCTTAAGGCAGACTTGTTTAACTTAT 57.431 29.630 0.00 0.00 40.37 1.73
175 176 8.999431 TCTTAAGGCAGACTTGTTTAACTTATG 58.001 33.333 0.00 0.00 40.37 1.90
176 177 8.685838 TTAAGGCAGACTTGTTTAACTTATGT 57.314 30.769 0.00 0.00 40.37 2.29
177 178 6.803154 AGGCAGACTTGTTTAACTTATGTC 57.197 37.500 0.00 0.41 0.00 3.06
178 179 6.534634 AGGCAGACTTGTTTAACTTATGTCT 58.465 36.000 0.00 2.56 34.18 3.41
180 181 6.204882 GGCAGACTTGTTTAACTTATGTCTGT 59.795 38.462 24.32 6.16 46.51 3.41
181 182 7.386848 GGCAGACTTGTTTAACTTATGTCTGTA 59.613 37.037 24.32 0.00 46.51 2.74
182 183 8.221766 GCAGACTTGTTTAACTTATGTCTGTAC 58.778 37.037 24.32 14.66 46.51 2.90
183 184 9.477484 CAGACTTGTTTAACTTATGTCTGTACT 57.523 33.333 20.13 0.00 42.57 2.73
184 185 9.694137 AGACTTGTTTAACTTATGTCTGTACTC 57.306 33.333 10.12 0.00 32.90 2.59
185 186 9.472361 GACTTGTTTAACTTATGTCTGTACTCA 57.528 33.333 0.00 0.00 0.00 3.41
186 187 9.477484 ACTTGTTTAACTTATGTCTGTACTCAG 57.523 33.333 0.00 0.00 42.54 3.35
187 188 9.692749 CTTGTTTAACTTATGTCTGTACTCAGA 57.307 33.333 0.00 0.00 46.85 3.27
200 201 6.341316 TCTGTACTCAGATATTGTTGCTTCC 58.659 40.000 0.00 0.00 44.58 3.46
201 202 5.109210 TGTACTCAGATATTGTTGCTTCCG 58.891 41.667 0.00 0.00 0.00 4.30
202 203 2.939103 ACTCAGATATTGTTGCTTCCGC 59.061 45.455 0.00 0.00 0.00 5.54
203 204 3.201290 CTCAGATATTGTTGCTTCCGCT 58.799 45.455 0.00 0.00 36.97 5.52
204 205 2.938451 TCAGATATTGTTGCTTCCGCTG 59.062 45.455 0.00 0.00 36.97 5.18
205 206 2.938451 CAGATATTGTTGCTTCCGCTGA 59.062 45.455 0.00 0.00 36.97 4.26
206 207 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
207 208 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
208 209 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
209 210 0.106708 TTGTTGCTTCCGCTGACTCT 59.893 50.000 0.00 0.00 36.97 3.24
210 211 0.106708 TGTTGCTTCCGCTGACTCTT 59.893 50.000 0.00 0.00 36.97 2.85
211 212 0.514691 GTTGCTTCCGCTGACTCTTG 59.485 55.000 0.00 0.00 36.97 3.02
212 213 0.106708 TTGCTTCCGCTGACTCTTGT 59.893 50.000 0.00 0.00 36.97 3.16
213 214 0.601046 TGCTTCCGCTGACTCTTGTG 60.601 55.000 0.00 0.00 36.97 3.33
214 215 0.601311 GCTTCCGCTGACTCTTGTGT 60.601 55.000 0.00 0.00 0.00 3.72
215 216 1.336887 GCTTCCGCTGACTCTTGTGTA 60.337 52.381 0.00 0.00 0.00 2.90
216 217 2.675317 GCTTCCGCTGACTCTTGTGTAT 60.675 50.000 0.00 0.00 0.00 2.29
217 218 3.589988 CTTCCGCTGACTCTTGTGTATT 58.410 45.455 0.00 0.00 0.00 1.89
218 219 3.232213 TCCGCTGACTCTTGTGTATTC 57.768 47.619 0.00 0.00 0.00 1.75
219 220 1.920574 CCGCTGACTCTTGTGTATTCG 59.079 52.381 0.00 0.00 0.00 3.34
220 221 2.415491 CCGCTGACTCTTGTGTATTCGA 60.415 50.000 0.00 0.00 0.00 3.71
221 222 2.848887 CGCTGACTCTTGTGTATTCGAG 59.151 50.000 0.00 0.00 0.00 4.04
222 223 2.600867 GCTGACTCTTGTGTATTCGAGC 59.399 50.000 0.00 0.00 0.00 5.03
223 224 3.674682 GCTGACTCTTGTGTATTCGAGCT 60.675 47.826 0.00 0.00 0.00 4.09
224 225 4.489810 CTGACTCTTGTGTATTCGAGCTT 58.510 43.478 0.00 0.00 0.00 3.74
225 226 5.638596 TGACTCTTGTGTATTCGAGCTTA 57.361 39.130 0.00 0.00 0.00 3.09
226 227 6.208988 TGACTCTTGTGTATTCGAGCTTAT 57.791 37.500 0.00 0.00 0.00 1.73
227 228 6.036470 TGACTCTTGTGTATTCGAGCTTATG 58.964 40.000 0.00 0.00 0.00 1.90
228 229 5.967088 ACTCTTGTGTATTCGAGCTTATGT 58.033 37.500 0.00 0.00 0.00 2.29
229 230 7.096884 ACTCTTGTGTATTCGAGCTTATGTA 57.903 36.000 0.00 0.00 0.00 2.29
230 231 7.717568 ACTCTTGTGTATTCGAGCTTATGTAT 58.282 34.615 0.00 0.00 0.00 2.29
231 232 8.198109 ACTCTTGTGTATTCGAGCTTATGTATT 58.802 33.333 0.00 0.00 0.00 1.89
232 233 8.575565 TCTTGTGTATTCGAGCTTATGTATTC 57.424 34.615 0.00 0.00 0.00 1.75
233 234 6.986424 TGTGTATTCGAGCTTATGTATTCG 57.014 37.500 0.00 0.00 34.56 3.34
234 235 6.731164 TGTGTATTCGAGCTTATGTATTCGA 58.269 36.000 0.00 0.00 39.97 3.71
235 236 6.856426 TGTGTATTCGAGCTTATGTATTCGAG 59.144 38.462 0.00 0.00 42.23 4.04
236 237 5.856986 TGTATTCGAGCTTATGTATTCGAGC 59.143 40.000 0.00 0.00 42.23 5.03
237 238 3.284323 TCGAGCTTATGTATTCGAGCC 57.716 47.619 0.00 0.00 37.18 4.70
238 239 2.030185 TCGAGCTTATGTATTCGAGCCC 60.030 50.000 0.00 0.00 37.18 5.19
239 240 2.029828 CGAGCTTATGTATTCGAGCCCT 60.030 50.000 0.00 0.00 35.79 5.19
240 241 3.580731 GAGCTTATGTATTCGAGCCCTC 58.419 50.000 0.00 0.00 35.79 4.30
254 255 4.479993 CCTCGAGGCCCTGGCTTG 62.480 72.222 20.67 2.01 38.98 4.01
255 256 3.710722 CTCGAGGCCCTGGCTTGT 61.711 66.667 3.91 0.00 40.08 3.16
256 257 2.284331 TCGAGGCCCTGGCTTGTA 60.284 61.111 8.29 0.00 40.08 2.41
257 258 1.899437 CTCGAGGCCCTGGCTTGTAA 61.899 60.000 3.91 0.00 40.08 2.41
258 259 1.224592 CGAGGCCCTGGCTTGTAAT 59.775 57.895 8.29 0.00 38.98 1.89
259 260 0.468226 CGAGGCCCTGGCTTGTAATA 59.532 55.000 8.29 0.00 38.98 0.98
260 261 1.072331 CGAGGCCCTGGCTTGTAATAT 59.928 52.381 8.29 0.00 38.98 1.28
261 262 2.301870 CGAGGCCCTGGCTTGTAATATA 59.698 50.000 8.29 0.00 38.98 0.86
262 263 3.244422 CGAGGCCCTGGCTTGTAATATAA 60.244 47.826 8.29 0.00 38.98 0.98
263 264 4.725490 GAGGCCCTGGCTTGTAATATAAA 58.275 43.478 8.29 0.00 38.98 1.40
264 265 4.729868 AGGCCCTGGCTTGTAATATAAAG 58.270 43.478 8.29 0.00 41.60 1.85
265 266 3.255888 GGCCCTGGCTTGTAATATAAAGC 59.744 47.826 8.29 8.49 46.48 3.51
266 267 4.145052 GCCCTGGCTTGTAATATAAAGCT 58.855 43.478 14.07 0.00 46.42 3.74
267 268 4.584743 GCCCTGGCTTGTAATATAAAGCTT 59.415 41.667 14.07 0.00 46.42 3.74
268 269 5.507985 GCCCTGGCTTGTAATATAAAGCTTG 60.508 44.000 0.00 9.05 46.42 4.01
269 270 5.594317 CCCTGGCTTGTAATATAAAGCTTGT 59.406 40.000 0.00 0.00 46.42 3.16
270 271 6.770785 CCCTGGCTTGTAATATAAAGCTTGTA 59.229 38.462 0.00 0.00 46.42 2.41
271 272 7.448469 CCCTGGCTTGTAATATAAAGCTTGTAT 59.552 37.037 0.00 3.21 46.42 2.29
272 273 8.850156 CCTGGCTTGTAATATAAAGCTTGTATT 58.150 33.333 16.85 16.85 46.42 1.89
300 301 9.781834 TTTTAATTTGTGTCTAGAGTTGTGTTG 57.218 29.630 0.00 0.00 0.00 3.33
301 302 8.500753 TTAATTTGTGTCTAGAGTTGTGTTGT 57.499 30.769 0.00 0.00 0.00 3.32
302 303 5.794687 TTTGTGTCTAGAGTTGTGTTGTG 57.205 39.130 0.00 0.00 0.00 3.33
303 304 3.792401 TGTGTCTAGAGTTGTGTTGTGG 58.208 45.455 0.00 0.00 0.00 4.17
304 305 3.196901 TGTGTCTAGAGTTGTGTTGTGGT 59.803 43.478 0.00 0.00 0.00 4.16
305 306 4.403113 TGTGTCTAGAGTTGTGTTGTGGTA 59.597 41.667 0.00 0.00 0.00 3.25
306 307 5.069914 TGTGTCTAGAGTTGTGTTGTGGTAT 59.930 40.000 0.00 0.00 0.00 2.73
307 308 5.634020 GTGTCTAGAGTTGTGTTGTGGTATC 59.366 44.000 0.00 0.00 0.00 2.24
308 309 5.538813 TGTCTAGAGTTGTGTTGTGGTATCT 59.461 40.000 0.00 0.00 0.00 1.98
309 310 6.041637 TGTCTAGAGTTGTGTTGTGGTATCTT 59.958 38.462 0.00 0.00 0.00 2.40
310 311 6.586844 GTCTAGAGTTGTGTTGTGGTATCTTC 59.413 42.308 0.00 0.00 0.00 2.87
311 312 4.642429 AGAGTTGTGTTGTGGTATCTTCC 58.358 43.478 0.00 0.00 0.00 3.46
312 313 3.751518 AGTTGTGTTGTGGTATCTTCCC 58.248 45.455 0.00 0.00 0.00 3.97
313 314 2.465860 TGTGTTGTGGTATCTTCCCG 57.534 50.000 0.00 0.00 0.00 5.14
314 315 1.695242 TGTGTTGTGGTATCTTCCCGT 59.305 47.619 0.00 0.00 0.00 5.28
315 316 2.073816 GTGTTGTGGTATCTTCCCGTG 58.926 52.381 0.00 0.00 0.00 4.94
316 317 1.972075 TGTTGTGGTATCTTCCCGTGA 59.028 47.619 0.00 0.00 0.00 4.35
317 318 2.028476 TGTTGTGGTATCTTCCCGTGAG 60.028 50.000 0.00 0.00 0.00 3.51
318 319 1.933021 TGTGGTATCTTCCCGTGAGT 58.067 50.000 0.00 0.00 0.00 3.41
319 320 1.822990 TGTGGTATCTTCCCGTGAGTC 59.177 52.381 0.00 0.00 0.00 3.36
320 321 1.136500 GTGGTATCTTCCCGTGAGTCC 59.864 57.143 0.00 0.00 0.00 3.85
321 322 1.006758 TGGTATCTTCCCGTGAGTCCT 59.993 52.381 0.00 0.00 0.00 3.85
322 323 2.108970 GGTATCTTCCCGTGAGTCCTT 58.891 52.381 0.00 0.00 0.00 3.36
323 324 2.159085 GGTATCTTCCCGTGAGTCCTTG 60.159 54.545 0.00 0.00 0.00 3.61
324 325 1.938585 ATCTTCCCGTGAGTCCTTGA 58.061 50.000 0.00 0.00 0.00 3.02
325 326 1.938585 TCTTCCCGTGAGTCCTTGAT 58.061 50.000 0.00 0.00 0.00 2.57
326 327 1.550524 TCTTCCCGTGAGTCCTTGATG 59.449 52.381 0.00 0.00 0.00 3.07
327 328 1.276421 CTTCCCGTGAGTCCTTGATGT 59.724 52.381 0.00 0.00 0.00 3.06
328 329 1.348064 TCCCGTGAGTCCTTGATGTT 58.652 50.000 0.00 0.00 0.00 2.71
329 330 1.001974 TCCCGTGAGTCCTTGATGTTG 59.998 52.381 0.00 0.00 0.00 3.33
330 331 1.001974 CCCGTGAGTCCTTGATGTTGA 59.998 52.381 0.00 0.00 0.00 3.18
331 332 2.355108 CCCGTGAGTCCTTGATGTTGAT 60.355 50.000 0.00 0.00 0.00 2.57
332 333 2.932614 CCGTGAGTCCTTGATGTTGATC 59.067 50.000 0.00 0.00 0.00 2.92
333 334 2.600420 CGTGAGTCCTTGATGTTGATCG 59.400 50.000 0.00 0.00 0.00 3.69
334 335 3.589988 GTGAGTCCTTGATGTTGATCGT 58.410 45.455 0.00 0.00 0.00 3.73
335 336 4.674362 CGTGAGTCCTTGATGTTGATCGTA 60.674 45.833 0.00 0.00 0.00 3.43
336 337 4.563184 GTGAGTCCTTGATGTTGATCGTAC 59.437 45.833 0.00 0.00 0.00 3.67
337 338 4.219725 TGAGTCCTTGATGTTGATCGTACA 59.780 41.667 3.31 3.31 0.00 2.90
338 339 4.495422 AGTCCTTGATGTTGATCGTACAC 58.505 43.478 2.92 0.02 0.00 2.90
339 340 4.021456 AGTCCTTGATGTTGATCGTACACA 60.021 41.667 2.92 0.00 0.00 3.72
340 341 4.870426 GTCCTTGATGTTGATCGTACACAT 59.130 41.667 2.92 1.71 0.00 3.21
341 342 5.351465 GTCCTTGATGTTGATCGTACACATT 59.649 40.000 2.92 0.00 0.00 2.71
342 343 5.937540 TCCTTGATGTTGATCGTACACATTT 59.062 36.000 2.92 0.00 0.00 2.32
343 344 6.023435 CCTTGATGTTGATCGTACACATTTG 58.977 40.000 2.92 0.00 0.00 2.32
344 345 4.968626 TGATGTTGATCGTACACATTTGC 58.031 39.130 2.92 0.00 0.00 3.68
345 346 3.447752 TGTTGATCGTACACATTTGCG 57.552 42.857 0.00 0.00 0.00 4.85
346 347 2.803386 TGTTGATCGTACACATTTGCGT 59.197 40.909 0.00 0.00 0.00 5.24
347 348 3.152983 GTTGATCGTACACATTTGCGTG 58.847 45.455 0.00 0.00 42.81 5.34
359 360 5.868257 CACATTTGCGTGTATGATTAGTGT 58.132 37.500 0.00 0.00 32.00 3.55
360 361 6.999456 CACATTTGCGTGTATGATTAGTGTA 58.001 36.000 0.00 0.00 32.00 2.90
361 362 7.630026 CACATTTGCGTGTATGATTAGTGTAT 58.370 34.615 0.00 0.00 32.00 2.29
362 363 7.583762 CACATTTGCGTGTATGATTAGTGTATG 59.416 37.037 0.00 0.00 32.00 2.39
363 364 7.494298 ACATTTGCGTGTATGATTAGTGTATGA 59.506 33.333 0.00 0.00 0.00 2.15
364 365 8.498358 CATTTGCGTGTATGATTAGTGTATGAT 58.502 33.333 0.00 0.00 0.00 2.45
365 366 8.432110 TTTGCGTGTATGATTAGTGTATGATT 57.568 30.769 0.00 0.00 0.00 2.57
366 367 7.406799 TGCGTGTATGATTAGTGTATGATTG 57.593 36.000 0.00 0.00 0.00 2.67
367 368 7.206687 TGCGTGTATGATTAGTGTATGATTGA 58.793 34.615 0.00 0.00 0.00 2.57
368 369 7.708752 TGCGTGTATGATTAGTGTATGATTGAA 59.291 33.333 0.00 0.00 0.00 2.69
369 370 8.712363 GCGTGTATGATTAGTGTATGATTGAAT 58.288 33.333 0.00 0.00 0.00 2.57
374 375 8.768957 ATGATTAGTGTATGATTGAATCGAGG 57.231 34.615 0.18 0.00 0.00 4.63
375 376 7.154656 TGATTAGTGTATGATTGAATCGAGGG 58.845 38.462 0.18 0.00 0.00 4.30
376 377 3.733337 AGTGTATGATTGAATCGAGGGC 58.267 45.455 0.18 0.00 0.00 5.19
377 378 2.476619 GTGTATGATTGAATCGAGGGCG 59.523 50.000 0.18 0.00 39.35 6.13
378 379 2.102420 TGTATGATTGAATCGAGGGCGT 59.898 45.455 0.18 0.00 38.98 5.68
379 380 1.871080 ATGATTGAATCGAGGGCGTC 58.129 50.000 0.18 0.00 38.98 5.19
380 381 0.534873 TGATTGAATCGAGGGCGTCA 59.465 50.000 8.06 0.00 38.98 4.35
381 382 0.931005 GATTGAATCGAGGGCGTCAC 59.069 55.000 8.06 0.00 38.98 3.67
382 383 0.249120 ATTGAATCGAGGGCGTCACA 59.751 50.000 8.06 0.00 38.98 3.58
383 384 0.669318 TTGAATCGAGGGCGTCACAC 60.669 55.000 8.06 0.00 38.98 3.82
384 385 1.215647 GAATCGAGGGCGTCACACT 59.784 57.895 8.06 0.00 38.98 3.55
385 386 0.802607 GAATCGAGGGCGTCACACTC 60.803 60.000 8.06 0.00 38.98 3.51
386 387 2.227089 AATCGAGGGCGTCACACTCC 62.227 60.000 8.06 0.00 38.98 3.85
387 388 4.436998 CGAGGGCGTCACACTCCC 62.437 72.222 8.06 0.00 43.46 4.30
390 391 4.309950 GGGCGTCACACTCCCGTT 62.310 66.667 0.00 0.00 32.82 4.44
391 392 2.737376 GGCGTCACACTCCCGTTC 60.737 66.667 0.00 0.00 0.00 3.95
392 393 2.737376 GCGTCACACTCCCGTTCC 60.737 66.667 0.00 0.00 0.00 3.62
393 394 2.048503 CGTCACACTCCCGTTCCC 60.049 66.667 0.00 0.00 0.00 3.97
394 395 2.346365 GTCACACTCCCGTTCCCC 59.654 66.667 0.00 0.00 0.00 4.81
395 396 2.122769 TCACACTCCCGTTCCCCA 60.123 61.111 0.00 0.00 0.00 4.96
396 397 1.537889 TCACACTCCCGTTCCCCAT 60.538 57.895 0.00 0.00 0.00 4.00
397 398 1.377202 CACACTCCCGTTCCCCATG 60.377 63.158 0.00 0.00 0.00 3.66
398 399 1.537889 ACACTCCCGTTCCCCATGA 60.538 57.895 0.00 0.00 0.00 3.07
399 400 1.078426 CACTCCCGTTCCCCATGAC 60.078 63.158 0.00 0.00 0.00 3.06
400 401 1.537889 ACTCCCGTTCCCCATGACA 60.538 57.895 0.00 0.00 0.00 3.58
401 402 1.078426 CTCCCGTTCCCCATGACAC 60.078 63.158 0.00 0.00 0.00 3.67
402 403 2.045340 CCCGTTCCCCATGACACC 60.045 66.667 0.00 0.00 0.00 4.16
403 404 2.435938 CCGTTCCCCATGACACCG 60.436 66.667 0.00 0.00 0.00 4.94
404 405 2.345991 CGTTCCCCATGACACCGT 59.654 61.111 0.00 0.00 0.00 4.83
405 406 1.740296 CGTTCCCCATGACACCGTC 60.740 63.158 0.00 0.00 0.00 4.79
406 407 1.376812 GTTCCCCATGACACCGTCC 60.377 63.158 0.00 0.00 0.00 4.79
407 408 1.537889 TTCCCCATGACACCGTCCT 60.538 57.895 0.00 0.00 0.00 3.85
408 409 1.550130 TTCCCCATGACACCGTCCTC 61.550 60.000 0.00 0.00 0.00 3.71
409 410 2.184322 CCCATGACACCGTCCTCG 59.816 66.667 0.00 0.00 0.00 4.63
410 411 2.646175 CCCATGACACCGTCCTCGT 61.646 63.158 0.00 0.00 35.01 4.18
411 412 1.292223 CCATGACACCGTCCTCGTT 59.708 57.895 0.00 0.00 35.01 3.85
412 413 0.736325 CCATGACACCGTCCTCGTTC 60.736 60.000 0.00 0.00 35.01 3.95
413 414 0.038618 CATGACACCGTCCTCGTTCA 60.039 55.000 0.00 0.00 35.01 3.18
414 415 0.895530 ATGACACCGTCCTCGTTCAT 59.104 50.000 0.00 0.00 35.01 2.57
415 416 0.242825 TGACACCGTCCTCGTTCATC 59.757 55.000 0.00 0.00 35.01 2.92
416 417 0.797249 GACACCGTCCTCGTTCATCG 60.797 60.000 0.00 0.00 41.41 3.84
417 418 2.158959 CACCGTCCTCGTTCATCGC 61.159 63.158 0.00 0.00 39.67 4.58
418 419 2.949678 CCGTCCTCGTTCATCGCG 60.950 66.667 0.00 0.00 39.67 5.87
419 420 2.202440 CGTCCTCGTTCATCGCGT 60.202 61.111 5.77 0.00 39.67 6.01
420 421 2.497092 CGTCCTCGTTCATCGCGTG 61.497 63.158 5.77 3.96 39.67 5.34
421 422 2.506217 TCCTCGTTCATCGCGTGC 60.506 61.111 5.77 0.00 39.67 5.34
422 423 2.507102 CCTCGTTCATCGCGTGCT 60.507 61.111 5.77 0.00 39.67 4.40
423 424 2.508891 CCTCGTTCATCGCGTGCTC 61.509 63.158 5.77 0.22 39.67 4.26
424 425 2.506217 TCGTTCATCGCGTGCTCC 60.506 61.111 5.77 0.00 39.67 4.70
425 426 2.809174 CGTTCATCGCGTGCTCCA 60.809 61.111 5.77 0.00 0.00 3.86
426 427 2.792290 CGTTCATCGCGTGCTCCAG 61.792 63.158 5.77 0.00 0.00 3.86
427 428 2.815211 TTCATCGCGTGCTCCAGC 60.815 61.111 5.77 0.00 42.50 4.85
428 429 4.819761 TCATCGCGTGCTCCAGCC 62.820 66.667 5.77 0.00 41.18 4.85
447 448 2.436646 CCGCCCTTGCTCATCGTT 60.437 61.111 0.00 0.00 34.43 3.85
448 449 2.753966 CCGCCCTTGCTCATCGTTG 61.754 63.158 0.00 0.00 34.43 4.10
449 450 2.753966 CGCCCTTGCTCATCGTTGG 61.754 63.158 0.00 0.00 34.43 3.77
450 451 3.056313 GCCCTTGCTCATCGTTGGC 62.056 63.158 0.00 0.00 33.53 4.52
451 452 2.753966 CCCTTGCTCATCGTTGGCG 61.754 63.158 0.00 0.00 39.92 5.69
452 453 2.099062 CTTGCTCATCGTTGGCGC 59.901 61.111 0.00 0.00 38.14 6.53
453 454 2.358615 TTGCTCATCGTTGGCGCT 60.359 55.556 7.64 0.00 38.14 5.92
454 455 2.573341 CTTGCTCATCGTTGGCGCTG 62.573 60.000 7.64 0.00 38.14 5.18
455 456 2.815211 GCTCATCGTTGGCGCTGA 60.815 61.111 7.64 0.07 40.34 4.26
456 457 3.084579 CTCATCGTTGGCGCTGAC 58.915 61.111 7.64 5.42 38.17 3.51
457 458 1.446792 CTCATCGTTGGCGCTGACT 60.447 57.895 7.64 0.00 38.17 3.41
458 459 0.179137 CTCATCGTTGGCGCTGACTA 60.179 55.000 7.64 0.00 38.17 2.59
459 460 0.179137 TCATCGTTGGCGCTGACTAG 60.179 55.000 7.64 0.00 38.17 2.57
460 461 0.458543 CATCGTTGGCGCTGACTAGT 60.459 55.000 7.64 0.00 36.46 2.57
461 462 1.100510 ATCGTTGGCGCTGACTAGTA 58.899 50.000 7.64 0.00 38.14 1.82
462 463 0.450583 TCGTTGGCGCTGACTAGTAG 59.549 55.000 7.64 0.00 38.14 2.57
463 464 1.140407 CGTTGGCGCTGACTAGTAGC 61.140 60.000 7.64 4.88 37.80 3.58
464 465 0.806492 GTTGGCGCTGACTAGTAGCC 60.806 60.000 18.63 18.63 44.51 3.93
465 466 1.956629 TTGGCGCTGACTAGTAGCCC 61.957 60.000 21.08 18.34 44.02 5.19
466 467 2.423898 GGCGCTGACTAGTAGCCCA 61.424 63.158 7.64 1.69 41.09 5.36
467 468 1.066587 GCGCTGACTAGTAGCCCAG 59.933 63.158 0.00 13.13 37.90 4.45
468 469 1.066587 CGCTGACTAGTAGCCCAGC 59.933 63.158 24.36 24.36 46.05 4.85
469 470 1.443828 GCTGACTAGTAGCCCAGCC 59.556 63.158 24.03 12.75 44.39 4.85
470 471 2.034048 GCTGACTAGTAGCCCAGCCC 62.034 65.000 24.03 7.53 44.39 5.19
471 472 0.397816 CTGACTAGTAGCCCAGCCCT 60.398 60.000 0.00 0.00 0.00 5.19
472 473 0.042731 TGACTAGTAGCCCAGCCCTT 59.957 55.000 0.00 0.00 0.00 3.95
473 474 0.466124 GACTAGTAGCCCAGCCCTTG 59.534 60.000 0.00 0.00 0.00 3.61
474 475 0.252742 ACTAGTAGCCCAGCCCTTGT 60.253 55.000 0.00 0.00 0.00 3.16
475 476 0.179000 CTAGTAGCCCAGCCCTTGTG 59.821 60.000 0.00 0.00 0.00 3.33
476 477 1.910580 TAGTAGCCCAGCCCTTGTGC 61.911 60.000 0.00 0.00 0.00 4.57
477 478 2.935481 TAGCCCAGCCCTTGTGCT 60.935 61.111 0.00 0.00 43.30 4.40
478 479 2.971598 TAGCCCAGCCCTTGTGCTC 61.972 63.158 0.00 0.00 39.88 4.26
480 481 4.020617 CCCAGCCCTTGTGCTCGA 62.021 66.667 0.00 0.00 40.32 4.04
481 482 2.270205 CCAGCCCTTGTGCTCGAT 59.730 61.111 0.00 0.00 40.32 3.59
482 483 1.377725 CCAGCCCTTGTGCTCGATT 60.378 57.895 0.00 0.00 40.32 3.34
483 484 0.962356 CCAGCCCTTGTGCTCGATTT 60.962 55.000 0.00 0.00 40.32 2.17
484 485 0.169672 CAGCCCTTGTGCTCGATTTG 59.830 55.000 0.00 0.00 40.32 2.32
485 486 0.962356 AGCCCTTGTGCTCGATTTGG 60.962 55.000 0.00 0.00 36.75 3.28
486 487 1.244019 GCCCTTGTGCTCGATTTGGT 61.244 55.000 0.00 0.00 0.00 3.67
487 488 0.523072 CCCTTGTGCTCGATTTGGTG 59.477 55.000 0.00 0.00 0.00 4.17
488 489 0.523072 CCTTGTGCTCGATTTGGTGG 59.477 55.000 0.00 0.00 0.00 4.61
489 490 0.109597 CTTGTGCTCGATTTGGTGGC 60.110 55.000 0.00 0.00 0.00 5.01
490 491 0.537143 TTGTGCTCGATTTGGTGGCT 60.537 50.000 0.00 0.00 0.00 4.75
491 492 0.537143 TGTGCTCGATTTGGTGGCTT 60.537 50.000 0.00 0.00 0.00 4.35
492 493 0.109597 GTGCTCGATTTGGTGGCTTG 60.110 55.000 0.00 0.00 0.00 4.01
493 494 0.537143 TGCTCGATTTGGTGGCTTGT 60.537 50.000 0.00 0.00 0.00 3.16
494 495 1.271108 TGCTCGATTTGGTGGCTTGTA 60.271 47.619 0.00 0.00 0.00 2.41
495 496 1.398390 GCTCGATTTGGTGGCTTGTAG 59.602 52.381 0.00 0.00 0.00 2.74
496 497 1.398390 CTCGATTTGGTGGCTTGTAGC 59.602 52.381 0.00 0.00 41.46 3.58
507 508 0.099436 GCTTGTAGCCCAATCTTGCG 59.901 55.000 0.00 0.00 34.48 4.85
508 509 0.734889 CTTGTAGCCCAATCTTGCGG 59.265 55.000 0.00 0.00 31.20 5.69
509 510 1.312371 TTGTAGCCCAATCTTGCGGC 61.312 55.000 12.00 12.00 41.71 6.53
510 511 2.124320 TAGCCCAATCTTGCGGCC 60.124 61.111 14.78 0.00 42.09 6.13
511 512 2.679342 TAGCCCAATCTTGCGGCCT 61.679 57.895 14.78 8.22 42.09 5.19
512 513 2.608970 TAGCCCAATCTTGCGGCCTC 62.609 60.000 14.78 0.00 42.09 4.70
513 514 2.830370 CCCAATCTTGCGGCCTCC 60.830 66.667 0.00 0.00 0.00 4.30
514 515 2.830370 CCAATCTTGCGGCCTCCC 60.830 66.667 0.00 0.00 0.00 4.30
515 516 2.045045 CAATCTTGCGGCCTCCCA 60.045 61.111 0.00 0.00 0.00 4.37
516 517 1.454479 CAATCTTGCGGCCTCCCAT 60.454 57.895 0.00 0.00 0.00 4.00
517 518 0.179020 CAATCTTGCGGCCTCCCATA 60.179 55.000 0.00 0.00 0.00 2.74
518 519 0.550914 AATCTTGCGGCCTCCCATAA 59.449 50.000 0.00 0.00 0.00 1.90
519 520 0.109342 ATCTTGCGGCCTCCCATAAG 59.891 55.000 0.00 0.00 0.00 1.73
520 521 1.224592 CTTGCGGCCTCCCATAAGT 59.775 57.895 0.00 0.00 0.00 2.24
521 522 0.815615 CTTGCGGCCTCCCATAAGTC 60.816 60.000 0.00 0.00 0.00 3.01
522 523 2.280186 GCGGCCTCCCATAAGTCG 60.280 66.667 0.00 0.00 0.00 4.18
523 524 2.792947 GCGGCCTCCCATAAGTCGA 61.793 63.158 0.00 0.00 0.00 4.20
524 525 2.050269 CGGCCTCCCATAAGTCGAT 58.950 57.895 0.00 0.00 0.00 3.59
525 526 0.319900 CGGCCTCCCATAAGTCGATG 60.320 60.000 0.00 0.00 0.00 3.84
526 527 0.603975 GGCCTCCCATAAGTCGATGC 60.604 60.000 0.00 0.00 0.00 3.91
527 528 0.603975 GCCTCCCATAAGTCGATGCC 60.604 60.000 0.00 0.00 0.00 4.40
528 529 0.319900 CCTCCCATAAGTCGATGCCG 60.320 60.000 0.00 0.00 37.07 5.69
529 530 0.389391 CTCCCATAAGTCGATGCCGT 59.611 55.000 0.00 0.00 37.05 5.68
530 531 0.104120 TCCCATAAGTCGATGCCGTG 59.896 55.000 0.00 0.00 37.05 4.94
531 532 0.179084 CCCATAAGTCGATGCCGTGT 60.179 55.000 0.00 0.00 37.05 4.49
532 533 1.651987 CCATAAGTCGATGCCGTGTT 58.348 50.000 0.00 0.00 37.05 3.32
533 534 2.006888 CCATAAGTCGATGCCGTGTTT 58.993 47.619 0.00 0.00 37.05 2.83
534 535 2.223021 CCATAAGTCGATGCCGTGTTTG 60.223 50.000 0.00 0.00 37.05 2.93
535 536 2.157834 TAAGTCGATGCCGTGTTTGT 57.842 45.000 0.00 0.00 37.05 2.83
536 537 0.586319 AAGTCGATGCCGTGTTTGTG 59.414 50.000 0.00 0.00 37.05 3.33
537 538 1.206578 GTCGATGCCGTGTTTGTGG 59.793 57.895 0.00 0.00 37.05 4.17
538 539 1.227704 TCGATGCCGTGTTTGTGGT 60.228 52.632 0.00 0.00 37.05 4.16
539 540 1.206578 CGATGCCGTGTTTGTGGTC 59.793 57.895 0.00 0.00 0.00 4.02
540 541 1.206578 GATGCCGTGTTTGTGGTCG 59.793 57.895 0.00 0.00 0.00 4.79
541 542 1.503818 GATGCCGTGTTTGTGGTCGT 61.504 55.000 0.00 0.00 0.00 4.34
542 543 1.098712 ATGCCGTGTTTGTGGTCGTT 61.099 50.000 0.00 0.00 0.00 3.85
543 544 1.298041 GCCGTGTTTGTGGTCGTTG 60.298 57.895 0.00 0.00 0.00 4.10
544 545 1.353804 CCGTGTTTGTGGTCGTTGG 59.646 57.895 0.00 0.00 0.00 3.77
545 546 1.090625 CCGTGTTTGTGGTCGTTGGA 61.091 55.000 0.00 0.00 0.00 3.53
546 547 0.303493 CGTGTTTGTGGTCGTTGGAG 59.697 55.000 0.00 0.00 0.00 3.86
547 548 0.661020 GTGTTTGTGGTCGTTGGAGG 59.339 55.000 0.00 0.00 0.00 4.30
548 549 1.098712 TGTTTGTGGTCGTTGGAGGC 61.099 55.000 0.00 0.00 0.00 4.70
549 550 1.890041 TTTGTGGTCGTTGGAGGCG 60.890 57.895 0.00 0.00 0.00 5.52
550 551 2.313051 TTTGTGGTCGTTGGAGGCGA 62.313 55.000 0.00 0.00 35.89 5.54
580 581 4.790962 CGCTGACATGGCTGGCCT 62.791 66.667 13.05 0.00 36.94 5.19
581 582 3.138798 GCTGACATGGCTGGCCTG 61.139 66.667 13.05 4.26 36.94 4.85
582 583 2.439701 CTGACATGGCTGGCCTGG 60.440 66.667 12.06 7.27 36.94 4.45
583 584 4.051167 TGACATGGCTGGCCTGGG 62.051 66.667 12.06 4.92 36.94 4.45
584 585 4.828296 GACATGGCTGGCCTGGGG 62.828 72.222 12.06 2.62 36.94 4.96
613 614 1.303282 GGTCAATCCCAGTGGGTCC 59.697 63.158 27.87 17.87 44.74 4.46
614 615 1.208165 GGTCAATCCCAGTGGGTCCT 61.208 60.000 27.87 11.22 44.74 3.85
615 616 1.580059 GTCAATCCCAGTGGGTCCTA 58.420 55.000 27.87 9.12 44.74 2.94
616 617 1.486726 GTCAATCCCAGTGGGTCCTAG 59.513 57.143 27.87 14.08 44.74 3.02
617 618 0.839946 CAATCCCAGTGGGTCCTAGG 59.160 60.000 27.87 0.82 44.74 3.02
618 619 0.327576 AATCCCAGTGGGTCCTAGGG 60.328 60.000 27.87 0.00 44.74 3.53
619 620 1.865045 TCCCAGTGGGTCCTAGGGA 60.865 63.158 27.87 2.61 45.94 4.20
630 631 3.507162 GTCCTAGGGACCTAGTAGACC 57.493 57.143 20.80 1.95 46.19 3.85
631 632 2.782341 GTCCTAGGGACCTAGTAGACCA 59.218 54.545 20.80 0.00 46.19 4.02
632 633 3.203934 GTCCTAGGGACCTAGTAGACCAA 59.796 52.174 20.80 0.00 46.19 3.67
633 634 3.462579 TCCTAGGGACCTAGTAGACCAAG 59.537 52.174 20.80 6.26 43.22 3.61
634 635 3.204831 CCTAGGGACCTAGTAGACCAAGT 59.795 52.174 20.80 0.00 43.22 3.16
635 636 3.848978 AGGGACCTAGTAGACCAAGTT 57.151 47.619 0.00 0.00 0.00 2.66
636 637 3.442076 AGGGACCTAGTAGACCAAGTTG 58.558 50.000 0.00 0.00 0.00 3.16
637 638 3.077088 AGGGACCTAGTAGACCAAGTTGA 59.923 47.826 3.87 0.00 0.00 3.18
638 639 3.195182 GGGACCTAGTAGACCAAGTTGAC 59.805 52.174 3.87 0.00 0.00 3.18
639 640 3.195182 GGACCTAGTAGACCAAGTTGACC 59.805 52.174 3.87 0.00 0.00 4.02
640 641 4.087907 GACCTAGTAGACCAAGTTGACCT 58.912 47.826 3.87 3.45 0.00 3.85
641 642 3.833070 ACCTAGTAGACCAAGTTGACCTG 59.167 47.826 3.87 0.00 0.00 4.00
642 643 3.195825 CCTAGTAGACCAAGTTGACCTGG 59.804 52.174 3.87 0.00 0.00 4.45
643 644 2.690840 AGTAGACCAAGTTGACCTGGT 58.309 47.619 3.87 0.00 37.37 4.00
653 654 2.325583 TTGACCTGGTCAACTGTGTC 57.674 50.000 32.67 3.90 45.88 3.67
654 655 0.104120 TGACCTGGTCAACTGTGTCG 59.896 55.000 26.54 0.00 39.78 4.35
655 656 0.387929 GACCTGGTCAACTGTGTCGA 59.612 55.000 21.70 0.00 32.09 4.20
656 657 0.104304 ACCTGGTCAACTGTGTCGAC 59.896 55.000 9.11 9.11 0.00 4.20
657 658 0.389391 CCTGGTCAACTGTGTCGACT 59.611 55.000 17.92 0.00 0.00 4.18
658 659 1.491670 CTGGTCAACTGTGTCGACTG 58.508 55.000 17.92 6.25 0.00 3.51
659 660 0.104120 TGGTCAACTGTGTCGACTGG 59.896 55.000 17.92 9.06 0.00 4.00
660 661 0.387929 GGTCAACTGTGTCGACTGGA 59.612 55.000 17.92 0.00 0.00 3.86
661 662 1.488527 GTCAACTGTGTCGACTGGAC 58.511 55.000 17.92 7.36 46.27 4.02
662 663 1.067212 GTCAACTGTGTCGACTGGACT 59.933 52.381 17.92 0.00 46.24 3.85
663 664 1.754803 TCAACTGTGTCGACTGGACTT 59.245 47.619 17.92 0.00 46.24 3.01
664 665 1.860950 CAACTGTGTCGACTGGACTTG 59.139 52.381 17.92 7.94 46.24 3.16
665 666 0.389391 ACTGTGTCGACTGGACTTGG 59.611 55.000 17.92 4.56 46.24 3.61
666 667 0.389391 CTGTGTCGACTGGACTTGGT 59.611 55.000 17.92 0.00 46.24 3.67
667 668 0.104120 TGTGTCGACTGGACTTGGTG 59.896 55.000 17.92 0.00 46.24 4.17
668 669 1.069090 TGTCGACTGGACTTGGTGC 59.931 57.895 17.92 0.00 46.24 5.01
669 670 1.069090 GTCGACTGGACTTGGTGCA 59.931 57.895 8.70 0.00 42.62 4.57
674 675 2.621763 CTGGACTTGGTGCAGTCAC 58.378 57.895 10.30 0.00 44.86 3.67
675 676 0.107456 CTGGACTTGGTGCAGTCACT 59.893 55.000 10.30 0.00 44.86 3.41
676 677 1.344438 CTGGACTTGGTGCAGTCACTA 59.656 52.381 10.30 0.00 44.86 2.74
677 678 1.765904 TGGACTTGGTGCAGTCACTAA 59.234 47.619 6.21 0.00 44.53 2.24
678 679 2.143925 GGACTTGGTGCAGTCACTAAC 58.856 52.381 6.21 0.00 44.53 2.34
679 680 2.484770 GGACTTGGTGCAGTCACTAACA 60.485 50.000 6.21 0.00 44.53 2.41
680 681 3.403038 GACTTGGTGCAGTCACTAACAT 58.597 45.455 0.00 0.00 42.57 2.71
681 682 3.141398 ACTTGGTGCAGTCACTAACATG 58.859 45.455 0.00 0.00 42.72 3.21
682 683 1.522668 TGGTGCAGTCACTAACATGC 58.477 50.000 0.00 0.00 42.72 4.06
683 684 0.443869 GGTGCAGTCACTAACATGCG 59.556 55.000 0.00 0.00 42.72 4.73
684 685 0.443869 GTGCAGTCACTAACATGCGG 59.556 55.000 0.00 0.00 41.58 5.69
685 686 0.673333 TGCAGTCACTAACATGCGGG 60.673 55.000 0.00 0.00 41.58 6.13
686 687 1.982073 GCAGTCACTAACATGCGGGC 61.982 60.000 0.00 0.00 0.00 6.13
687 688 0.391661 CAGTCACTAACATGCGGGCT 60.392 55.000 0.00 0.00 0.00 5.19
691 692 1.091771 CACTAACATGCGGGCTGAGG 61.092 60.000 0.00 0.00 0.00 3.86
780 781 3.531207 CAGGATCTCCGAGCCGCA 61.531 66.667 0.00 0.00 43.66 5.69
819 820 1.001503 CCCTCTCCTCTCCTGCACT 59.998 63.158 0.00 0.00 0.00 4.40
945 947 1.079612 CACTAAACGTCCCCGGACC 60.080 63.158 0.73 0.00 41.76 4.46
1018 1020 0.888736 CATGACCCGCAAGACCAACA 60.889 55.000 0.00 0.00 43.02 3.33
1020 1022 0.179004 TGACCCGCAAGACCAACAAT 60.179 50.000 0.00 0.00 43.02 2.71
1093 1095 1.592223 CAAGTCCCTCGGGTCAGAC 59.408 63.158 1.18 0.00 36.47 3.51
1095 1097 2.675772 GTCCCTCGGGTCAGACGT 60.676 66.667 1.18 0.00 36.47 4.34
1242 1244 0.538057 ACTTGAGTGTACCCCGTCGA 60.538 55.000 0.00 0.00 0.00 4.20
1261 1263 2.344025 GAATCGCCAAGTTCGGTTACT 58.656 47.619 0.00 0.00 29.51 2.24
1276 1278 3.068560 GGTTACTGTCGCAACCATGTAA 58.931 45.455 6.17 0.00 43.13 2.41
1286 1288 5.178809 GTCGCAACCATGTAAAACTACTTCT 59.821 40.000 0.00 0.00 0.00 2.85
1312 1314 1.596727 GATACGAGAACGACTACCGCT 59.403 52.381 0.00 0.00 43.32 5.52
1347 1349 4.951254 TGAGTGAACAAACTACCGATGAA 58.049 39.130 0.00 0.00 0.00 2.57
1559 1561 2.207590 GTTCCTCGTTTTCCTTGTCGT 58.792 47.619 0.00 0.00 0.00 4.34
1614 1616 3.501202 CCCTCTATCTCTAGCATGTCCCA 60.501 52.174 0.00 0.00 0.00 4.37
1996 2023 9.447040 CATAAACGAGATCGAACTAAATAGTCA 57.553 33.333 9.58 0.00 43.02 3.41
2097 2125 2.496871 TGCCATGCTTCATTAAACCAGG 59.503 45.455 0.00 0.00 0.00 4.45
2113 2141 2.304092 CCAGGCATGCATCATACTTGT 58.696 47.619 21.36 0.00 0.00 3.16
2141 2170 3.467374 TCGTGCCATGCTTATGTGATA 57.533 42.857 0.00 0.00 0.00 2.15
2270 2299 2.698797 TGGACTCGTTCTTCTTCCTTGT 59.301 45.455 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.252421 TGACATCTGGCTCCTGGACT 60.252 55.000 0.00 0.00 0.00 3.85
1 2 0.107945 GTGACATCTGGCTCCTGGAC 60.108 60.000 0.00 0.00 0.00 4.02
2 3 1.267574 GGTGACATCTGGCTCCTGGA 61.268 60.000 0.00 0.00 34.00 3.86
3 4 1.222936 GGTGACATCTGGCTCCTGG 59.777 63.158 0.00 0.00 34.00 4.45
4 5 0.392193 GTGGTGACATCTGGCTCCTG 60.392 60.000 5.77 0.00 46.14 3.86
5 6 1.557269 GGTGGTGACATCTGGCTCCT 61.557 60.000 5.77 0.00 46.14 3.69
6 7 1.078143 GGTGGTGACATCTGGCTCC 60.078 63.158 0.00 0.00 46.14 4.70
7 8 0.036732 TTGGTGGTGACATCTGGCTC 59.963 55.000 0.00 0.00 43.86 4.70
8 9 0.250901 GTTGGTGGTGACATCTGGCT 60.251 55.000 0.00 0.00 43.86 4.75
9 10 1.577328 CGTTGGTGGTGACATCTGGC 61.577 60.000 0.00 0.00 43.86 4.85
10 11 1.577328 GCGTTGGTGGTGACATCTGG 61.577 60.000 0.00 0.00 43.86 3.86
11 12 0.603707 AGCGTTGGTGGTGACATCTG 60.604 55.000 0.00 0.00 43.86 2.90
12 13 0.108585 AAGCGTTGGTGGTGACATCT 59.891 50.000 0.00 0.00 43.86 2.90
13 14 1.463444 GTAAGCGTTGGTGGTGACATC 59.537 52.381 0.00 0.00 46.14 3.06
14 15 1.071699 AGTAAGCGTTGGTGGTGACAT 59.928 47.619 0.00 0.00 46.14 3.06
15 16 0.466543 AGTAAGCGTTGGTGGTGACA 59.533 50.000 0.00 0.00 38.70 3.58
16 17 2.064014 GTAGTAAGCGTTGGTGGTGAC 58.936 52.381 0.00 0.00 0.00 3.67
17 18 1.965643 AGTAGTAAGCGTTGGTGGTGA 59.034 47.619 0.00 0.00 0.00 4.02
18 19 2.450609 AGTAGTAAGCGTTGGTGGTG 57.549 50.000 0.00 0.00 0.00 4.17
19 20 2.232208 GGTAGTAGTAAGCGTTGGTGGT 59.768 50.000 0.00 0.00 0.00 4.16
20 21 2.417787 GGGTAGTAGTAAGCGTTGGTGG 60.418 54.545 0.00 0.00 0.00 4.61
21 22 2.494870 AGGGTAGTAGTAAGCGTTGGTG 59.505 50.000 0.00 0.00 0.00 4.17
22 23 2.494870 CAGGGTAGTAGTAAGCGTTGGT 59.505 50.000 0.00 0.00 0.00 3.67
23 24 2.756760 TCAGGGTAGTAGTAAGCGTTGG 59.243 50.000 0.00 0.00 0.00 3.77
24 25 3.181489 CCTCAGGGTAGTAGTAAGCGTTG 60.181 52.174 0.00 0.00 0.00 4.10
25 26 3.022406 CCTCAGGGTAGTAGTAAGCGTT 58.978 50.000 0.00 0.00 0.00 4.84
26 27 2.652590 CCTCAGGGTAGTAGTAAGCGT 58.347 52.381 0.00 0.00 0.00 5.07
27 28 1.955080 CCCTCAGGGTAGTAGTAAGCG 59.045 57.143 0.00 0.00 38.25 4.68
40 41 2.750141 TAGTAGTAGGCACCCTCAGG 57.250 55.000 0.00 0.00 34.61 3.86
41 42 3.319405 CACATAGTAGTAGGCACCCTCAG 59.681 52.174 0.00 0.00 34.61 3.35
42 43 3.053170 TCACATAGTAGTAGGCACCCTCA 60.053 47.826 0.00 0.00 34.61 3.86
43 44 3.563223 TCACATAGTAGTAGGCACCCTC 58.437 50.000 0.00 0.00 34.61 4.30
44 45 3.682592 TCACATAGTAGTAGGCACCCT 57.317 47.619 0.00 0.00 37.71 4.34
45 46 3.895656 TCATCACATAGTAGTAGGCACCC 59.104 47.826 0.00 0.00 0.00 4.61
46 47 4.262079 GGTCATCACATAGTAGTAGGCACC 60.262 50.000 0.00 0.00 0.00 5.01
47 48 4.341235 TGGTCATCACATAGTAGTAGGCAC 59.659 45.833 0.00 0.00 0.00 5.01
48 49 4.341235 GTGGTCATCACATAGTAGTAGGCA 59.659 45.833 0.00 0.00 45.39 4.75
49 50 4.872664 GTGGTCATCACATAGTAGTAGGC 58.127 47.826 0.00 0.00 45.39 3.93
61 62 0.317160 TGGTCGTCAGTGGTCATCAC 59.683 55.000 0.00 0.00 46.39 3.06
62 63 0.603065 CTGGTCGTCAGTGGTCATCA 59.397 55.000 0.00 0.00 38.64 3.07
63 64 0.108615 CCTGGTCGTCAGTGGTCATC 60.109 60.000 7.51 0.00 41.83 2.92
64 65 0.541998 TCCTGGTCGTCAGTGGTCAT 60.542 55.000 0.00 0.00 41.83 3.06
65 66 1.152631 TCCTGGTCGTCAGTGGTCA 60.153 57.895 0.00 0.00 41.83 4.02
66 67 1.179814 ACTCCTGGTCGTCAGTGGTC 61.180 60.000 0.00 0.00 41.83 4.02
67 68 0.111832 TACTCCTGGTCGTCAGTGGT 59.888 55.000 0.00 7.74 41.83 4.16
68 69 0.811915 CTACTCCTGGTCGTCAGTGG 59.188 60.000 0.00 0.00 41.83 4.00
69 70 1.535833 ACTACTCCTGGTCGTCAGTG 58.464 55.000 0.00 0.00 41.83 3.66
70 71 2.289592 AACTACTCCTGGTCGTCAGT 57.710 50.000 0.00 0.00 41.83 3.41
71 72 2.683867 CCTAACTACTCCTGGTCGTCAG 59.316 54.545 0.00 2.39 43.00 3.51
72 73 2.306805 TCCTAACTACTCCTGGTCGTCA 59.693 50.000 0.00 0.00 0.00 4.35
73 74 2.944349 CTCCTAACTACTCCTGGTCGTC 59.056 54.545 0.00 0.00 0.00 4.20
74 75 2.356947 CCTCCTAACTACTCCTGGTCGT 60.357 54.545 0.00 0.00 0.00 4.34
75 76 2.299521 CCTCCTAACTACTCCTGGTCG 58.700 57.143 0.00 0.00 0.00 4.79
76 77 2.033372 GCCTCCTAACTACTCCTGGTC 58.967 57.143 0.00 0.00 0.00 4.02
77 78 1.646977 AGCCTCCTAACTACTCCTGGT 59.353 52.381 0.00 0.00 0.00 4.00
78 79 2.312390 GAGCCTCCTAACTACTCCTGG 58.688 57.143 0.00 0.00 0.00 4.45
79 80 2.312390 GGAGCCTCCTAACTACTCCTG 58.688 57.143 2.64 0.00 42.99 3.86
80 81 1.930914 TGGAGCCTCCTAACTACTCCT 59.069 52.381 12.94 0.00 45.86 3.69
81 82 2.456073 TGGAGCCTCCTAACTACTCC 57.544 55.000 12.94 0.00 45.87 3.85
82 83 2.696187 CCTTGGAGCCTCCTAACTACTC 59.304 54.545 12.94 0.00 37.46 2.59
83 84 2.753247 CCTTGGAGCCTCCTAACTACT 58.247 52.381 12.94 0.00 37.46 2.57
84 85 1.139256 GCCTTGGAGCCTCCTAACTAC 59.861 57.143 12.94 0.00 37.46 2.73
85 86 1.273609 TGCCTTGGAGCCTCCTAACTA 60.274 52.381 12.94 0.00 37.46 2.24
86 87 0.547712 TGCCTTGGAGCCTCCTAACT 60.548 55.000 12.94 0.00 37.46 2.24
87 88 0.107459 CTGCCTTGGAGCCTCCTAAC 60.107 60.000 12.94 0.19 37.46 2.34
88 89 1.274703 CCTGCCTTGGAGCCTCCTAA 61.275 60.000 12.94 4.02 37.46 2.69
89 90 1.690633 CCTGCCTTGGAGCCTCCTA 60.691 63.158 12.94 3.09 37.46 2.94
90 91 3.013932 CCTGCCTTGGAGCCTCCT 61.014 66.667 12.94 0.00 37.46 3.69
91 92 3.011517 TCCTGCCTTGGAGCCTCC 61.012 66.667 2.98 2.98 36.96 4.30
92 93 2.588989 CTCCTGCCTTGGAGCCTC 59.411 66.667 4.87 0.00 45.84 4.70
110 111 2.094545 ACAATGATCGAAAAGGCAAGGC 60.095 45.455 0.00 0.00 0.00 4.35
111 112 3.855689 ACAATGATCGAAAAGGCAAGG 57.144 42.857 0.00 0.00 0.00 3.61
112 113 3.365820 GCAACAATGATCGAAAAGGCAAG 59.634 43.478 0.00 0.00 0.00 4.01
113 114 3.005684 AGCAACAATGATCGAAAAGGCAA 59.994 39.130 0.00 0.00 0.00 4.52
114 115 2.557924 AGCAACAATGATCGAAAAGGCA 59.442 40.909 0.00 0.00 0.00 4.75
115 116 3.221964 AGCAACAATGATCGAAAAGGC 57.778 42.857 0.00 0.00 0.00 4.35
116 117 5.463061 ACAAAAGCAACAATGATCGAAAAGG 59.537 36.000 0.00 0.00 0.00 3.11
117 118 6.349426 CACAAAAGCAACAATGATCGAAAAG 58.651 36.000 0.00 0.00 0.00 2.27
118 119 5.276773 GCACAAAAGCAACAATGATCGAAAA 60.277 36.000 0.00 0.00 0.00 2.29
119 120 4.208873 GCACAAAAGCAACAATGATCGAAA 59.791 37.500 0.00 0.00 0.00 3.46
120 121 3.735240 GCACAAAAGCAACAATGATCGAA 59.265 39.130 0.00 0.00 0.00 3.71
121 122 3.004629 AGCACAAAAGCAACAATGATCGA 59.995 39.130 0.00 0.00 36.85 3.59
122 123 3.311106 AGCACAAAAGCAACAATGATCG 58.689 40.909 0.00 0.00 36.85 3.69
123 124 4.325472 GCTAGCACAAAAGCAACAATGATC 59.675 41.667 10.63 0.00 38.63 2.92
124 125 4.240096 GCTAGCACAAAAGCAACAATGAT 58.760 39.130 10.63 0.00 38.63 2.45
125 126 3.552684 GGCTAGCACAAAAGCAACAATGA 60.553 43.478 18.24 0.00 40.61 2.57
126 127 2.733026 GGCTAGCACAAAAGCAACAATG 59.267 45.455 18.24 0.00 40.61 2.82
127 128 2.629617 AGGCTAGCACAAAAGCAACAAT 59.370 40.909 18.24 0.00 40.61 2.71
128 129 2.031120 AGGCTAGCACAAAAGCAACAA 58.969 42.857 18.24 0.00 40.61 2.83
129 130 1.691196 AGGCTAGCACAAAAGCAACA 58.309 45.000 18.24 0.00 40.61 3.33
130 131 2.294512 AGAAGGCTAGCACAAAAGCAAC 59.705 45.455 18.24 0.00 40.61 4.17
131 132 2.586425 AGAAGGCTAGCACAAAAGCAA 58.414 42.857 18.24 0.00 40.61 3.91
132 133 2.276732 AGAAGGCTAGCACAAAAGCA 57.723 45.000 18.24 0.00 40.61 3.91
133 134 4.379918 CCTTAAGAAGGCTAGCACAAAAGC 60.380 45.833 18.24 0.00 42.78 3.51
134 135 5.302357 CCTTAAGAAGGCTAGCACAAAAG 57.698 43.478 18.24 11.15 42.78 2.27
147 148 7.497925 AGTTAAACAAGTCTGCCTTAAGAAG 57.502 36.000 3.36 1.37 0.00 2.85
148 149 7.875327 AAGTTAAACAAGTCTGCCTTAAGAA 57.125 32.000 3.36 0.00 0.00 2.52
149 150 8.999431 CATAAGTTAAACAAGTCTGCCTTAAGA 58.001 33.333 3.36 0.00 0.00 2.10
150 151 8.784043 ACATAAGTTAAACAAGTCTGCCTTAAG 58.216 33.333 0.00 0.00 0.00 1.85
151 152 8.685838 ACATAAGTTAAACAAGTCTGCCTTAA 57.314 30.769 0.00 0.00 0.00 1.85
152 153 8.154856 AGACATAAGTTAAACAAGTCTGCCTTA 58.845 33.333 0.00 0.00 33.96 2.69
153 154 6.998673 AGACATAAGTTAAACAAGTCTGCCTT 59.001 34.615 0.00 0.00 33.96 4.35
154 155 6.428159 CAGACATAAGTTAAACAAGTCTGCCT 59.572 38.462 0.00 0.00 43.10 4.75
155 156 6.603095 CAGACATAAGTTAAACAAGTCTGCC 58.397 40.000 0.00 0.00 43.10 4.85
158 159 9.694137 GAGTACAGACATAAGTTAAACAAGTCT 57.306 33.333 0.00 0.00 35.44 3.24
159 160 9.472361 TGAGTACAGACATAAGTTAAACAAGTC 57.528 33.333 0.00 0.00 0.00 3.01
160 161 9.477484 CTGAGTACAGACATAAGTTAAACAAGT 57.523 33.333 0.00 0.00 46.03 3.16
161 162 9.692749 TCTGAGTACAGACATAAGTTAAACAAG 57.307 33.333 0.00 0.00 46.55 3.16
177 178 5.233050 CGGAAGCAACAATATCTGAGTACAG 59.767 44.000 0.00 0.00 44.66 2.74
178 179 5.109210 CGGAAGCAACAATATCTGAGTACA 58.891 41.667 0.00 0.00 0.00 2.90
179 180 5.643339 CGGAAGCAACAATATCTGAGTAC 57.357 43.478 0.00 0.00 0.00 2.73
196 197 2.724977 TACACAAGAGTCAGCGGAAG 57.275 50.000 0.00 0.00 0.00 3.46
197 198 3.585862 GAATACACAAGAGTCAGCGGAA 58.414 45.455 0.00 0.00 0.00 4.30
198 199 2.415491 CGAATACACAAGAGTCAGCGGA 60.415 50.000 0.00 0.00 0.00 5.54
199 200 1.920574 CGAATACACAAGAGTCAGCGG 59.079 52.381 0.00 0.00 0.00 5.52
200 201 2.848887 CTCGAATACACAAGAGTCAGCG 59.151 50.000 0.00 0.00 0.00 5.18
201 202 2.600867 GCTCGAATACACAAGAGTCAGC 59.399 50.000 0.00 0.00 33.57 4.26
202 203 4.103365 AGCTCGAATACACAAGAGTCAG 57.897 45.455 0.00 0.00 33.57 3.51
203 204 4.521130 AAGCTCGAATACACAAGAGTCA 57.479 40.909 0.00 0.00 33.57 3.41
204 205 6.037098 ACATAAGCTCGAATACACAAGAGTC 58.963 40.000 0.00 0.00 33.57 3.36
205 206 5.967088 ACATAAGCTCGAATACACAAGAGT 58.033 37.500 0.00 0.00 33.57 3.24
206 207 8.581057 AATACATAAGCTCGAATACACAAGAG 57.419 34.615 0.00 0.00 0.00 2.85
207 208 7.378728 CGAATACATAAGCTCGAATACACAAGA 59.621 37.037 0.00 0.00 33.13 3.02
208 209 7.378728 TCGAATACATAAGCTCGAATACACAAG 59.621 37.037 0.00 0.00 37.38 3.16
209 210 7.197703 TCGAATACATAAGCTCGAATACACAA 58.802 34.615 0.00 0.00 37.38 3.33
210 211 6.731164 TCGAATACATAAGCTCGAATACACA 58.269 36.000 0.00 0.00 37.38 3.72
211 212 6.183359 GCTCGAATACATAAGCTCGAATACAC 60.183 42.308 0.00 0.00 39.60 2.90
212 213 5.856986 GCTCGAATACATAAGCTCGAATACA 59.143 40.000 0.00 0.00 39.60 2.29
213 214 5.286558 GGCTCGAATACATAAGCTCGAATAC 59.713 44.000 0.00 0.00 39.60 1.89
214 215 5.399858 GGCTCGAATACATAAGCTCGAATA 58.600 41.667 0.00 0.00 39.60 1.75
215 216 4.238514 GGCTCGAATACATAAGCTCGAAT 58.761 43.478 0.00 0.00 39.60 3.34
216 217 3.552273 GGGCTCGAATACATAAGCTCGAA 60.552 47.826 0.00 0.00 39.60 3.71
217 218 2.030185 GGGCTCGAATACATAAGCTCGA 60.030 50.000 0.00 0.00 37.95 4.04
218 219 2.029828 AGGGCTCGAATACATAAGCTCG 60.030 50.000 0.00 0.00 40.23 5.03
219 220 3.580731 GAGGGCTCGAATACATAAGCTC 58.419 50.000 0.00 0.00 35.41 4.09
220 221 3.669251 GAGGGCTCGAATACATAAGCT 57.331 47.619 0.00 0.00 35.12 3.74
237 238 4.479993 CAAGCCAGGGCCTCGAGG 62.480 72.222 27.83 27.83 43.17 4.63
238 239 1.899437 TTACAAGCCAGGGCCTCGAG 61.899 60.000 0.95 5.13 43.17 4.04
239 240 1.271840 ATTACAAGCCAGGGCCTCGA 61.272 55.000 0.95 0.00 43.17 4.04
240 241 0.468226 TATTACAAGCCAGGGCCTCG 59.532 55.000 0.95 0.00 43.17 4.63
241 242 2.959465 ATATTACAAGCCAGGGCCTC 57.041 50.000 0.95 0.00 43.17 4.70
242 243 4.729868 CTTTATATTACAAGCCAGGGCCT 58.270 43.478 0.00 0.00 43.17 5.19
243 244 3.255888 GCTTTATATTACAAGCCAGGGCC 59.744 47.826 6.70 0.00 39.70 5.80
244 245 4.145052 AGCTTTATATTACAAGCCAGGGC 58.855 43.478 0.97 0.97 45.63 5.19
245 246 5.594317 ACAAGCTTTATATTACAAGCCAGGG 59.406 40.000 0.00 0.00 45.63 4.45
246 247 6.699575 ACAAGCTTTATATTACAAGCCAGG 57.300 37.500 0.00 0.00 45.63 4.45
274 275 9.781834 CAACACAACTCTAGACACAAATTAAAA 57.218 29.630 0.00 0.00 0.00 1.52
275 276 8.952278 ACAACACAACTCTAGACACAAATTAAA 58.048 29.630 0.00 0.00 0.00 1.52
276 277 8.394877 CACAACACAACTCTAGACACAAATTAA 58.605 33.333 0.00 0.00 0.00 1.40
277 278 7.011950 CCACAACACAACTCTAGACACAAATTA 59.988 37.037 0.00 0.00 0.00 1.40
278 279 6.183360 CCACAACACAACTCTAGACACAAATT 60.183 38.462 0.00 0.00 0.00 1.82
279 280 5.296780 CCACAACACAACTCTAGACACAAAT 59.703 40.000 0.00 0.00 0.00 2.32
280 281 4.634004 CCACAACACAACTCTAGACACAAA 59.366 41.667 0.00 0.00 0.00 2.83
281 282 4.188462 CCACAACACAACTCTAGACACAA 58.812 43.478 0.00 0.00 0.00 3.33
282 283 3.196901 ACCACAACACAACTCTAGACACA 59.803 43.478 0.00 0.00 0.00 3.72
283 284 3.793559 ACCACAACACAACTCTAGACAC 58.206 45.455 0.00 0.00 0.00 3.67
284 285 5.538813 AGATACCACAACACAACTCTAGACA 59.461 40.000 0.00 0.00 0.00 3.41
285 286 6.026947 AGATACCACAACACAACTCTAGAC 57.973 41.667 0.00 0.00 0.00 2.59
286 287 6.295123 GGAAGATACCACAACACAACTCTAGA 60.295 42.308 0.00 0.00 0.00 2.43
287 288 5.869888 GGAAGATACCACAACACAACTCTAG 59.130 44.000 0.00 0.00 0.00 2.43
288 289 5.279809 GGGAAGATACCACAACACAACTCTA 60.280 44.000 0.00 0.00 0.00 2.43
289 290 4.505039 GGGAAGATACCACAACACAACTCT 60.505 45.833 0.00 0.00 0.00 3.24
290 291 3.751698 GGGAAGATACCACAACACAACTC 59.248 47.826 0.00 0.00 0.00 3.01
291 292 3.751518 GGGAAGATACCACAACACAACT 58.248 45.455 0.00 0.00 0.00 3.16
292 293 2.482721 CGGGAAGATACCACAACACAAC 59.517 50.000 0.00 0.00 0.00 3.32
293 294 2.105134 ACGGGAAGATACCACAACACAA 59.895 45.455 0.00 0.00 0.00 3.33
294 295 1.695242 ACGGGAAGATACCACAACACA 59.305 47.619 0.00 0.00 0.00 3.72
295 296 2.073816 CACGGGAAGATACCACAACAC 58.926 52.381 0.00 0.00 0.00 3.32
296 297 1.972075 TCACGGGAAGATACCACAACA 59.028 47.619 0.00 0.00 0.00 3.33
297 298 2.028385 ACTCACGGGAAGATACCACAAC 60.028 50.000 0.00 0.00 0.00 3.32
298 299 2.232941 GACTCACGGGAAGATACCACAA 59.767 50.000 0.00 0.00 0.00 3.33
299 300 1.822990 GACTCACGGGAAGATACCACA 59.177 52.381 0.00 0.00 0.00 4.17
300 301 1.136500 GGACTCACGGGAAGATACCAC 59.864 57.143 0.00 0.00 0.00 4.16
301 302 1.006758 AGGACTCACGGGAAGATACCA 59.993 52.381 0.00 0.00 0.00 3.25
302 303 1.777941 AGGACTCACGGGAAGATACC 58.222 55.000 0.00 0.00 0.00 2.73
303 304 2.758979 TCAAGGACTCACGGGAAGATAC 59.241 50.000 0.00 0.00 0.00 2.24
304 305 3.095912 TCAAGGACTCACGGGAAGATA 57.904 47.619 0.00 0.00 0.00 1.98
305 306 1.938585 TCAAGGACTCACGGGAAGAT 58.061 50.000 0.00 0.00 0.00 2.40
306 307 1.550524 CATCAAGGACTCACGGGAAGA 59.449 52.381 0.00 0.00 0.00 2.87
307 308 1.276421 ACATCAAGGACTCACGGGAAG 59.724 52.381 0.00 0.00 0.00 3.46
308 309 1.348064 ACATCAAGGACTCACGGGAA 58.652 50.000 0.00 0.00 0.00 3.97
309 310 1.001974 CAACATCAAGGACTCACGGGA 59.998 52.381 0.00 0.00 0.00 5.14
310 311 1.001974 TCAACATCAAGGACTCACGGG 59.998 52.381 0.00 0.00 0.00 5.28
311 312 2.455674 TCAACATCAAGGACTCACGG 57.544 50.000 0.00 0.00 0.00 4.94
312 313 2.600420 CGATCAACATCAAGGACTCACG 59.400 50.000 0.00 0.00 0.00 4.35
313 314 3.589988 ACGATCAACATCAAGGACTCAC 58.410 45.455 0.00 0.00 0.00 3.51
314 315 3.961480 ACGATCAACATCAAGGACTCA 57.039 42.857 0.00 0.00 0.00 3.41
315 316 4.563184 GTGTACGATCAACATCAAGGACTC 59.437 45.833 1.57 0.00 0.00 3.36
316 317 4.021456 TGTGTACGATCAACATCAAGGACT 60.021 41.667 1.57 0.00 0.00 3.85
317 318 4.242475 TGTGTACGATCAACATCAAGGAC 58.758 43.478 1.57 0.00 0.00 3.85
318 319 4.529109 TGTGTACGATCAACATCAAGGA 57.471 40.909 1.57 0.00 0.00 3.36
319 320 5.801350 AATGTGTACGATCAACATCAAGG 57.199 39.130 1.57 0.00 0.00 3.61
320 321 5.509272 GCAAATGTGTACGATCAACATCAAG 59.491 40.000 1.57 0.00 0.00 3.02
321 322 5.389778 GCAAATGTGTACGATCAACATCAA 58.610 37.500 1.57 0.00 0.00 2.57
322 323 4.435386 CGCAAATGTGTACGATCAACATCA 60.435 41.667 1.57 3.16 0.00 3.07
323 324 4.021822 CGCAAATGTGTACGATCAACATC 58.978 43.478 1.57 0.00 0.00 3.06
324 325 3.435327 ACGCAAATGTGTACGATCAACAT 59.565 39.130 0.00 0.00 36.94 2.71
325 326 2.803386 ACGCAAATGTGTACGATCAACA 59.197 40.909 0.00 0.00 36.94 3.33
326 327 3.152983 CACGCAAATGTGTACGATCAAC 58.847 45.455 0.00 0.00 36.94 3.18
327 328 3.447752 CACGCAAATGTGTACGATCAA 57.552 42.857 0.00 0.00 36.94 2.57
336 337 5.868257 ACACTAATCATACACGCAAATGTG 58.132 37.500 0.00 0.00 45.41 3.21
337 338 7.494298 TCATACACTAATCATACACGCAAATGT 59.506 33.333 0.00 0.00 36.56 2.71
338 339 7.850501 TCATACACTAATCATACACGCAAATG 58.149 34.615 0.00 0.00 0.00 2.32
339 340 8.607441 ATCATACACTAATCATACACGCAAAT 57.393 30.769 0.00 0.00 0.00 2.32
340 341 8.334632 CAATCATACACTAATCATACACGCAAA 58.665 33.333 0.00 0.00 0.00 3.68
341 342 7.708752 TCAATCATACACTAATCATACACGCAA 59.291 33.333 0.00 0.00 0.00 4.85
342 343 7.206687 TCAATCATACACTAATCATACACGCA 58.793 34.615 0.00 0.00 0.00 5.24
343 344 7.637709 TCAATCATACACTAATCATACACGC 57.362 36.000 0.00 0.00 0.00 5.34
348 349 9.860898 CCTCGATTCAATCATACACTAATCATA 57.139 33.333 0.00 0.00 0.00 2.15
349 350 7.821359 CCCTCGATTCAATCATACACTAATCAT 59.179 37.037 0.00 0.00 0.00 2.45
350 351 7.154656 CCCTCGATTCAATCATACACTAATCA 58.845 38.462 0.00 0.00 0.00 2.57
351 352 6.091441 GCCCTCGATTCAATCATACACTAATC 59.909 42.308 0.00 0.00 0.00 1.75
352 353 5.934625 GCCCTCGATTCAATCATACACTAAT 59.065 40.000 0.00 0.00 0.00 1.73
353 354 5.297547 GCCCTCGATTCAATCATACACTAA 58.702 41.667 0.00 0.00 0.00 2.24
354 355 4.558697 CGCCCTCGATTCAATCATACACTA 60.559 45.833 0.00 0.00 38.10 2.74
355 356 3.733337 GCCCTCGATTCAATCATACACT 58.267 45.455 0.00 0.00 0.00 3.55
356 357 2.476619 CGCCCTCGATTCAATCATACAC 59.523 50.000 0.00 0.00 38.10 2.90
357 358 2.102420 ACGCCCTCGATTCAATCATACA 59.898 45.455 0.00 0.00 39.41 2.29
358 359 2.731976 GACGCCCTCGATTCAATCATAC 59.268 50.000 0.00 0.00 39.41 2.39
359 360 2.364002 TGACGCCCTCGATTCAATCATA 59.636 45.455 0.00 0.00 39.41 2.15
360 361 1.138859 TGACGCCCTCGATTCAATCAT 59.861 47.619 0.00 0.00 39.41 2.45
361 362 0.534873 TGACGCCCTCGATTCAATCA 59.465 50.000 0.00 0.00 39.41 2.57
362 363 0.931005 GTGACGCCCTCGATTCAATC 59.069 55.000 0.00 0.00 39.41 2.67
363 364 0.249120 TGTGACGCCCTCGATTCAAT 59.751 50.000 0.00 0.00 39.41 2.57
364 365 0.669318 GTGTGACGCCCTCGATTCAA 60.669 55.000 0.00 0.00 39.41 2.69
365 366 1.080093 GTGTGACGCCCTCGATTCA 60.080 57.895 0.00 0.00 39.41 2.57
366 367 0.802607 GAGTGTGACGCCCTCGATTC 60.803 60.000 0.00 0.00 39.41 2.52
367 368 1.215647 GAGTGTGACGCCCTCGATT 59.784 57.895 0.00 0.00 39.41 3.34
368 369 2.711922 GGAGTGTGACGCCCTCGAT 61.712 63.158 0.00 0.00 39.41 3.59
369 370 3.371063 GGAGTGTGACGCCCTCGA 61.371 66.667 0.00 0.00 39.41 4.04
374 375 2.737376 GAACGGGAGTGTGACGCC 60.737 66.667 0.00 0.00 46.69 5.68
375 376 2.737376 GGAACGGGAGTGTGACGC 60.737 66.667 0.00 0.00 46.69 5.19
376 377 2.048503 GGGAACGGGAGTGTGACG 60.049 66.667 0.00 0.00 46.69 4.35
377 378 1.838073 ATGGGGAACGGGAGTGTGAC 61.838 60.000 0.00 0.00 46.69 3.67
378 379 1.537889 ATGGGGAACGGGAGTGTGA 60.538 57.895 0.00 0.00 46.69 3.58
379 380 1.377202 CATGGGGAACGGGAGTGTG 60.377 63.158 0.00 0.00 46.69 3.82
380 381 1.537889 TCATGGGGAACGGGAGTGT 60.538 57.895 0.00 0.00 46.69 3.55
381 382 1.078426 GTCATGGGGAACGGGAGTG 60.078 63.158 0.00 0.00 46.69 3.51
383 384 1.078426 GTGTCATGGGGAACGGGAG 60.078 63.158 0.00 0.00 0.00 4.30
384 385 2.598787 GGTGTCATGGGGAACGGGA 61.599 63.158 0.00 0.00 0.00 5.14
385 386 2.045340 GGTGTCATGGGGAACGGG 60.045 66.667 0.00 0.00 0.00 5.28
386 387 2.435938 CGGTGTCATGGGGAACGG 60.436 66.667 0.00 0.00 0.00 4.44
387 388 1.740296 GACGGTGTCATGGGGAACG 60.740 63.158 0.00 0.00 32.09 3.95
388 389 1.376812 GGACGGTGTCATGGGGAAC 60.377 63.158 0.00 0.00 33.68 3.62
389 390 1.537889 AGGACGGTGTCATGGGGAA 60.538 57.895 0.00 0.00 33.68 3.97
390 391 1.987855 GAGGACGGTGTCATGGGGA 60.988 63.158 0.00 0.00 33.68 4.81
391 392 2.584608 GAGGACGGTGTCATGGGG 59.415 66.667 0.00 0.00 33.68 4.96
392 393 2.167398 AACGAGGACGGTGTCATGGG 62.167 60.000 0.00 0.00 44.46 4.00
393 394 0.736325 GAACGAGGACGGTGTCATGG 60.736 60.000 0.00 0.00 40.51 3.66
394 395 0.038618 TGAACGAGGACGGTGTCATG 60.039 55.000 0.00 0.00 40.51 3.07
395 396 0.895530 ATGAACGAGGACGGTGTCAT 59.104 50.000 0.00 0.00 40.51 3.06
396 397 0.242825 GATGAACGAGGACGGTGTCA 59.757 55.000 0.00 0.00 40.51 3.58
397 398 0.797249 CGATGAACGAGGACGGTGTC 60.797 60.000 0.00 0.00 45.77 3.67
398 399 1.211969 CGATGAACGAGGACGGTGT 59.788 57.895 0.00 0.00 45.77 4.16
399 400 2.158959 GCGATGAACGAGGACGGTG 61.159 63.158 0.00 0.00 45.77 4.94
400 401 2.181021 GCGATGAACGAGGACGGT 59.819 61.111 0.00 0.00 45.77 4.83
401 402 2.949678 CGCGATGAACGAGGACGG 60.950 66.667 0.00 0.00 45.77 4.79
402 403 2.202440 ACGCGATGAACGAGGACG 60.202 61.111 15.93 0.00 45.40 4.79
403 404 2.789203 GCACGCGATGAACGAGGAC 61.789 63.158 15.93 0.00 45.40 3.85
404 405 2.506217 GCACGCGATGAACGAGGA 60.506 61.111 15.93 0.00 45.40 3.71
405 406 2.507102 AGCACGCGATGAACGAGG 60.507 61.111 15.93 0.00 45.40 4.63
406 407 2.508891 GGAGCACGCGATGAACGAG 61.509 63.158 15.93 0.00 45.77 4.18
407 408 2.506217 GGAGCACGCGATGAACGA 60.506 61.111 15.93 0.00 45.77 3.85
408 409 2.792290 CTGGAGCACGCGATGAACG 61.792 63.158 15.93 0.00 45.66 3.95
409 410 3.084579 CTGGAGCACGCGATGAAC 58.915 61.111 15.93 0.00 0.00 3.18
410 411 2.815211 GCTGGAGCACGCGATGAA 60.815 61.111 15.93 0.00 41.59 2.57
411 412 4.819761 GGCTGGAGCACGCGATGA 62.820 66.667 15.93 0.00 44.36 2.92
432 433 3.056313 GCCAACGATGAGCAAGGGC 62.056 63.158 0.00 0.00 41.61 5.19
433 434 2.753966 CGCCAACGATGAGCAAGGG 61.754 63.158 0.00 0.00 43.93 3.95
434 435 2.787249 CGCCAACGATGAGCAAGG 59.213 61.111 0.00 0.00 43.93 3.61
435 436 2.099062 GCGCCAACGATGAGCAAG 59.901 61.111 0.00 0.00 43.93 4.01
436 437 2.358615 AGCGCCAACGATGAGCAA 60.359 55.556 2.29 0.00 43.93 3.91
442 443 1.065701 CTACTAGTCAGCGCCAACGAT 59.934 52.381 2.29 0.00 43.93 3.73
443 444 0.450583 CTACTAGTCAGCGCCAACGA 59.549 55.000 2.29 0.00 43.93 3.85
444 445 1.140407 GCTACTAGTCAGCGCCAACG 61.140 60.000 2.29 0.00 44.07 4.10
445 446 0.806492 GGCTACTAGTCAGCGCCAAC 60.806 60.000 2.29 1.91 39.97 3.77
446 447 1.515954 GGCTACTAGTCAGCGCCAA 59.484 57.895 2.29 0.00 39.97 4.52
447 448 2.423898 GGGCTACTAGTCAGCGCCA 61.424 63.158 20.67 0.00 43.93 5.69
448 449 2.417936 GGGCTACTAGTCAGCGCC 59.582 66.667 20.67 17.56 43.93 6.53
450 451 1.066587 GCTGGGCTACTAGTCAGCG 59.933 63.158 15.94 6.14 42.24 5.18
452 453 0.397816 AGGGCTGGGCTACTAGTCAG 60.398 60.000 0.00 1.32 30.39 3.51
453 454 0.042731 AAGGGCTGGGCTACTAGTCA 59.957 55.000 0.00 0.00 30.39 3.41
454 455 0.466124 CAAGGGCTGGGCTACTAGTC 59.534 60.000 0.00 0.00 0.00 2.59
455 456 0.252742 ACAAGGGCTGGGCTACTAGT 60.253 55.000 0.00 0.00 0.00 2.57
456 457 0.179000 CACAAGGGCTGGGCTACTAG 59.821 60.000 0.00 0.00 0.00 2.57
457 458 2.296920 CACAAGGGCTGGGCTACTA 58.703 57.895 0.00 0.00 0.00 1.82
458 459 3.081554 CACAAGGGCTGGGCTACT 58.918 61.111 0.00 0.00 0.00 2.57
463 464 2.826777 AATCGAGCACAAGGGCTGGG 62.827 60.000 0.00 0.00 45.99 4.45
464 465 0.962356 AAATCGAGCACAAGGGCTGG 60.962 55.000 0.00 0.00 45.99 4.85
465 466 0.169672 CAAATCGAGCACAAGGGCTG 59.830 55.000 0.00 0.00 45.99 4.85
467 468 1.244019 ACCAAATCGAGCACAAGGGC 61.244 55.000 0.00 0.00 0.00 5.19
468 469 0.523072 CACCAAATCGAGCACAAGGG 59.477 55.000 0.00 0.00 0.00 3.95
469 470 0.523072 CCACCAAATCGAGCACAAGG 59.477 55.000 0.00 0.00 0.00 3.61
470 471 0.109597 GCCACCAAATCGAGCACAAG 60.110 55.000 0.00 0.00 0.00 3.16
471 472 0.537143 AGCCACCAAATCGAGCACAA 60.537 50.000 0.00 0.00 0.00 3.33
472 473 0.537143 AAGCCACCAAATCGAGCACA 60.537 50.000 0.00 0.00 0.00 4.57
473 474 0.109597 CAAGCCACCAAATCGAGCAC 60.110 55.000 0.00 0.00 0.00 4.40
474 475 0.537143 ACAAGCCACCAAATCGAGCA 60.537 50.000 0.00 0.00 0.00 4.26
475 476 1.398390 CTACAAGCCACCAAATCGAGC 59.602 52.381 0.00 0.00 0.00 5.03
476 477 1.398390 GCTACAAGCCACCAAATCGAG 59.602 52.381 0.00 0.00 34.48 4.04
477 478 1.448985 GCTACAAGCCACCAAATCGA 58.551 50.000 0.00 0.00 34.48 3.59
478 479 3.996825 GCTACAAGCCACCAAATCG 57.003 52.632 0.00 0.00 34.48 3.34
488 489 0.099436 CGCAAGATTGGGCTACAAGC 59.901 55.000 2.45 2.45 45.59 4.01
489 490 0.734889 CCGCAAGATTGGGCTACAAG 59.265 55.000 4.22 0.00 43.48 3.16
490 491 1.312371 GCCGCAAGATTGGGCTACAA 61.312 55.000 14.24 0.00 44.54 2.41
491 492 1.748879 GCCGCAAGATTGGGCTACA 60.749 57.895 14.24 0.00 39.72 2.74
492 493 2.481471 GGCCGCAAGATTGGGCTAC 61.481 63.158 18.41 6.19 46.62 3.58
493 494 2.124320 GGCCGCAAGATTGGGCTA 60.124 61.111 18.41 0.00 46.62 3.93
496 497 2.830370 GGAGGCCGCAAGATTGGG 60.830 66.667 9.31 2.83 43.02 4.12
497 498 2.830370 GGGAGGCCGCAAGATTGG 60.830 66.667 9.31 0.00 43.02 3.16
498 499 0.179020 TATGGGAGGCCGCAAGATTG 60.179 55.000 9.31 0.00 38.77 2.67
499 500 0.550914 TTATGGGAGGCCGCAAGATT 59.449 50.000 9.31 0.00 38.77 2.40
500 501 0.109342 CTTATGGGAGGCCGCAAGAT 59.891 55.000 9.31 0.00 38.77 2.40
501 502 1.271840 ACTTATGGGAGGCCGCAAGA 61.272 55.000 9.31 0.00 38.77 3.02
502 503 0.815615 GACTTATGGGAGGCCGCAAG 60.816 60.000 9.31 5.76 38.77 4.01
503 504 1.223487 GACTTATGGGAGGCCGCAA 59.777 57.895 9.31 0.00 38.77 4.85
504 505 2.908015 GACTTATGGGAGGCCGCA 59.092 61.111 9.31 0.00 39.64 5.69
505 506 2.100879 ATCGACTTATGGGAGGCCGC 62.101 60.000 0.00 0.00 0.00 6.53
506 507 0.319900 CATCGACTTATGGGAGGCCG 60.320 60.000 0.00 0.00 0.00 6.13
507 508 0.603975 GCATCGACTTATGGGAGGCC 60.604 60.000 0.00 0.00 31.83 5.19
508 509 0.603975 GGCATCGACTTATGGGAGGC 60.604 60.000 0.00 0.00 36.81 4.70
509 510 0.319900 CGGCATCGACTTATGGGAGG 60.320 60.000 0.00 0.00 39.00 4.30
510 511 0.389391 ACGGCATCGACTTATGGGAG 59.611 55.000 0.00 0.00 40.11 4.30
511 512 0.104120 CACGGCATCGACTTATGGGA 59.896 55.000 0.00 0.00 40.11 4.37
512 513 0.179084 ACACGGCATCGACTTATGGG 60.179 55.000 0.00 0.00 40.11 4.00
513 514 1.651987 AACACGGCATCGACTTATGG 58.348 50.000 0.00 0.00 40.11 2.74
514 515 2.415168 ACAAACACGGCATCGACTTATG 59.585 45.455 0.00 0.00 40.11 1.90
515 516 2.415168 CACAAACACGGCATCGACTTAT 59.585 45.455 0.00 0.00 40.11 1.73
516 517 1.795872 CACAAACACGGCATCGACTTA 59.204 47.619 0.00 0.00 40.11 2.24
517 518 0.586319 CACAAACACGGCATCGACTT 59.414 50.000 0.00 0.00 40.11 3.01
518 519 1.227999 CCACAAACACGGCATCGACT 61.228 55.000 0.00 0.00 40.11 4.18
519 520 1.206578 CCACAAACACGGCATCGAC 59.793 57.895 0.00 0.00 40.11 4.20
520 521 1.225376 GACCACAAACACGGCATCGA 61.225 55.000 0.00 0.00 40.11 3.59
521 522 1.206578 GACCACAAACACGGCATCG 59.793 57.895 0.00 0.00 43.02 3.84
522 523 1.206578 CGACCACAAACACGGCATC 59.793 57.895 0.00 0.00 0.00 3.91
523 524 1.098712 AACGACCACAAACACGGCAT 61.099 50.000 0.00 0.00 0.00 4.40
524 525 1.745864 AACGACCACAAACACGGCA 60.746 52.632 0.00 0.00 0.00 5.69
525 526 1.298041 CAACGACCACAAACACGGC 60.298 57.895 0.00 0.00 0.00 5.68
526 527 1.090625 TCCAACGACCACAAACACGG 61.091 55.000 0.00 0.00 0.00 4.94
527 528 0.303493 CTCCAACGACCACAAACACG 59.697 55.000 0.00 0.00 0.00 4.49
528 529 0.661020 CCTCCAACGACCACAAACAC 59.339 55.000 0.00 0.00 0.00 3.32
529 530 1.098712 GCCTCCAACGACCACAAACA 61.099 55.000 0.00 0.00 0.00 2.83
530 531 1.652563 GCCTCCAACGACCACAAAC 59.347 57.895 0.00 0.00 0.00 2.93
531 532 1.890041 CGCCTCCAACGACCACAAA 60.890 57.895 0.00 0.00 0.00 2.83
532 533 2.280524 CGCCTCCAACGACCACAA 60.281 61.111 0.00 0.00 0.00 3.33
533 534 3.228017 TCGCCTCCAACGACCACA 61.228 61.111 0.00 0.00 33.96 4.17
563 564 4.790962 AGGCCAGCCATGTCAGCG 62.791 66.667 12.03 0.00 38.92 5.18
564 565 3.138798 CAGGCCAGCCATGTCAGC 61.139 66.667 12.03 0.00 38.92 4.26
565 566 2.439701 CCAGGCCAGCCATGTCAG 60.440 66.667 12.03 0.00 38.92 3.51
566 567 4.051167 CCCAGGCCAGCCATGTCA 62.051 66.667 12.03 0.00 38.92 3.58
567 568 4.828296 CCCCAGGCCAGCCATGTC 62.828 72.222 12.03 0.00 38.92 3.06
603 604 4.051932 GTCCCTAGGACCCACTGG 57.948 66.667 11.48 0.00 46.19 4.00
614 615 4.293102 TCAACTTGGTCTACTAGGTCCCTA 59.707 45.833 0.00 0.00 0.00 3.53
615 616 3.077088 TCAACTTGGTCTACTAGGTCCCT 59.923 47.826 0.00 0.00 0.00 4.20
616 617 3.195182 GTCAACTTGGTCTACTAGGTCCC 59.805 52.174 0.00 0.00 0.00 4.46
617 618 3.195182 GGTCAACTTGGTCTACTAGGTCC 59.805 52.174 0.00 0.00 0.00 4.46
618 619 4.082136 CAGGTCAACTTGGTCTACTAGGTC 60.082 50.000 0.00 0.00 0.00 3.85
619 620 3.833070 CAGGTCAACTTGGTCTACTAGGT 59.167 47.826 0.00 0.00 0.00 3.08
620 621 3.195825 CCAGGTCAACTTGGTCTACTAGG 59.804 52.174 3.25 0.00 38.21 3.02
621 622 4.457834 CCAGGTCAACTTGGTCTACTAG 57.542 50.000 3.25 0.00 38.21 2.57
635 636 0.104120 CGACACAGTTGACCAGGTCA 59.896 55.000 19.21 19.21 41.09 4.02
636 637 0.387929 TCGACACAGTTGACCAGGTC 59.612 55.000 13.35 13.35 0.00 3.85
637 638 0.104304 GTCGACACAGTTGACCAGGT 59.896 55.000 11.55 0.00 40.11 4.00
638 639 0.389391 AGTCGACACAGTTGACCAGG 59.611 55.000 19.50 0.00 45.29 4.45
639 640 1.491670 CAGTCGACACAGTTGACCAG 58.508 55.000 19.50 4.18 45.29 4.00
640 641 0.104120 CCAGTCGACACAGTTGACCA 59.896 55.000 19.50 0.00 45.29 4.02
641 642 0.387929 TCCAGTCGACACAGTTGACC 59.612 55.000 19.50 0.00 45.29 4.02
642 643 1.067212 AGTCCAGTCGACACAGTTGAC 59.933 52.381 19.50 13.35 44.72 3.18
643 644 1.399714 AGTCCAGTCGACACAGTTGA 58.600 50.000 19.50 1.61 44.66 3.18
644 645 1.860950 CAAGTCCAGTCGACACAGTTG 59.139 52.381 19.50 14.90 44.66 3.16
645 646 1.202533 CCAAGTCCAGTCGACACAGTT 60.203 52.381 19.50 6.98 44.66 3.16
646 647 0.389391 CCAAGTCCAGTCGACACAGT 59.611 55.000 19.50 0.40 44.66 3.55
647 648 0.389391 ACCAAGTCCAGTCGACACAG 59.611 55.000 19.50 7.01 44.66 3.66
648 649 0.104120 CACCAAGTCCAGTCGACACA 59.896 55.000 19.50 0.00 44.66 3.72
649 650 1.222115 GCACCAAGTCCAGTCGACAC 61.222 60.000 19.50 7.40 44.66 3.67
650 651 1.069090 GCACCAAGTCCAGTCGACA 59.931 57.895 19.50 0.00 44.66 4.35
651 652 0.946221 CTGCACCAAGTCCAGTCGAC 60.946 60.000 7.70 7.70 42.32 4.20
652 653 1.367471 CTGCACCAAGTCCAGTCGA 59.633 57.895 0.00 0.00 0.00 4.20
653 654 0.946221 GACTGCACCAAGTCCAGTCG 60.946 60.000 3.22 0.00 43.92 4.18
654 655 2.919971 GACTGCACCAAGTCCAGTC 58.080 57.895 3.22 3.22 45.75 3.51
655 656 0.179045 GTGACTGCACCAAGTCCAGT 60.179 55.000 1.77 0.00 45.03 4.00
656 657 0.107456 AGTGACTGCACCAAGTCCAG 59.893 55.000 1.77 0.00 46.32 3.86
657 658 1.419381 TAGTGACTGCACCAAGTCCA 58.581 50.000 0.00 0.00 46.32 4.02
658 659 2.143925 GTTAGTGACTGCACCAAGTCC 58.856 52.381 0.00 0.00 46.32 3.85
659 660 2.833794 TGTTAGTGACTGCACCAAGTC 58.166 47.619 0.00 0.00 46.32 3.01
660 661 3.141398 CATGTTAGTGACTGCACCAAGT 58.859 45.455 0.00 0.00 46.32 3.16
661 662 2.095567 GCATGTTAGTGACTGCACCAAG 60.096 50.000 0.00 0.00 46.32 3.61
662 663 1.879380 GCATGTTAGTGACTGCACCAA 59.121 47.619 0.00 0.00 46.32 3.67
663 664 1.522668 GCATGTTAGTGACTGCACCA 58.477 50.000 0.00 0.00 46.32 4.17
664 665 0.443869 CGCATGTTAGTGACTGCACC 59.556 55.000 0.00 0.00 46.32 5.01
665 666 0.443869 CCGCATGTTAGTGACTGCAC 59.556 55.000 0.00 0.00 45.49 4.57
666 667 0.673333 CCCGCATGTTAGTGACTGCA 60.673 55.000 0.00 0.00 34.27 4.41
667 668 1.982073 GCCCGCATGTTAGTGACTGC 61.982 60.000 0.00 0.00 32.53 4.40
668 669 0.391661 AGCCCGCATGTTAGTGACTG 60.392 55.000 0.00 0.00 0.00 3.51
669 670 0.391661 CAGCCCGCATGTTAGTGACT 60.392 55.000 0.00 0.00 0.00 3.41
670 671 0.391130 TCAGCCCGCATGTTAGTGAC 60.391 55.000 0.00 0.00 0.00 3.67
671 672 0.108186 CTCAGCCCGCATGTTAGTGA 60.108 55.000 0.00 0.00 0.00 3.41
672 673 1.091771 CCTCAGCCCGCATGTTAGTG 61.092 60.000 0.00 0.00 0.00 2.74
673 674 1.221840 CCTCAGCCCGCATGTTAGT 59.778 57.895 0.00 0.00 0.00 2.24
674 675 0.811616 GACCTCAGCCCGCATGTTAG 60.812 60.000 0.00 0.00 0.00 2.34
675 676 1.220749 GACCTCAGCCCGCATGTTA 59.779 57.895 0.00 0.00 0.00 2.41
676 677 2.045926 GACCTCAGCCCGCATGTT 60.046 61.111 0.00 0.00 0.00 2.71
677 678 4.101448 GGACCTCAGCCCGCATGT 62.101 66.667 0.00 0.00 0.00 3.21
678 679 3.335356 AAGGACCTCAGCCCGCATG 62.335 63.158 0.00 0.00 0.00 4.06
679 680 3.011517 AAGGACCTCAGCCCGCAT 61.012 61.111 0.00 0.00 0.00 4.73
680 681 3.706373 GAAGGACCTCAGCCCGCA 61.706 66.667 0.00 0.00 0.00 5.69
681 682 3.394836 AGAAGGACCTCAGCCCGC 61.395 66.667 0.00 0.00 0.00 6.13
682 683 2.581354 CAGAAGGACCTCAGCCCG 59.419 66.667 0.00 0.00 0.00 6.13
683 684 1.492993 AACCAGAAGGACCTCAGCCC 61.493 60.000 0.00 0.00 38.69 5.19
684 685 0.035915 GAACCAGAAGGACCTCAGCC 60.036 60.000 0.00 0.00 38.69 4.85
685 686 0.035915 GGAACCAGAAGGACCTCAGC 60.036 60.000 0.00 0.00 38.69 4.26
734 735 0.251916 CTTTGTGGGATGGGTCGCTA 59.748 55.000 0.00 0.00 38.09 4.26
739 740 1.384191 GCTCCTTTGTGGGATGGGT 59.616 57.895 0.00 0.00 34.56 4.51
851 853 2.194326 GGAGGAGGAAGGCCATGC 59.806 66.667 5.01 0.00 36.29 4.06
915 917 1.270625 CGTTTAGTGAAGGCAGGGTCA 60.271 52.381 0.00 0.00 0.00 4.02
945 947 1.000385 TGGCAGTTCAAAATTGCTCCG 60.000 47.619 7.04 0.00 42.95 4.63
1018 1020 1.741770 GAGCACTCGTTCGGGCATT 60.742 57.895 0.00 0.00 0.00 3.56
1020 1022 4.373116 GGAGCACTCGTTCGGGCA 62.373 66.667 0.00 0.00 0.00 5.36
1242 1244 2.073816 CAGTAACCGAACTTGGCGATT 58.926 47.619 0.00 0.00 0.00 3.34
1261 1263 4.382291 AGTAGTTTTACATGGTTGCGACA 58.618 39.130 6.39 0.00 31.96 4.35
1276 1278 9.953697 GTTCTCGTATCATCATAGAAGTAGTTT 57.046 33.333 0.00 0.00 0.00 2.66
1286 1288 5.119743 CGGTAGTCGTTCTCGTATCATCATA 59.880 44.000 0.00 0.00 38.33 2.15
1312 1314 0.179234 TCACTCAACGGCCTTCAACA 59.821 50.000 0.00 0.00 0.00 3.33
1347 1349 4.214971 ACGTTCACGAAGTAGTCATACACT 59.785 41.667 6.30 0.00 41.61 3.55
1559 1561 1.584495 CGAGTGTCCCACATGACGA 59.416 57.895 0.00 0.00 38.11 4.20
1614 1616 0.655733 CGGTGCGAAAGAAAGTGTGT 59.344 50.000 0.00 0.00 0.00 3.72
1841 1867 6.071447 CCGATAAATCCCCATATGCATTTTGA 60.071 38.462 3.54 0.00 0.00 2.69
1843 1869 6.015918 TCCGATAAATCCCCATATGCATTTT 58.984 36.000 3.54 0.00 0.00 1.82
1996 2023 5.160641 GCATATTGACGAAACACCACATTT 58.839 37.500 0.00 0.00 0.00 2.32
2097 2125 3.305094 GCACAAACAAGTATGATGCATGC 59.695 43.478 11.82 11.82 0.00 4.06
2141 2170 7.940850 AGAAGCACACAACATAGTAAACAAAT 58.059 30.769 0.00 0.00 0.00 2.32
2270 2299 2.726821 GTCATCTTGCCTGAAATCCCA 58.273 47.619 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.