Multiple sequence alignment - TraesCS3A01G202800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G202800 chr3A 100.000 5493 0 0 1 5493 346957225 346951733 0.000000e+00 10144
1 TraesCS3A01G202800 chr3A 97.857 140 2 1 5354 5493 293724478 293724616 1.980000e-59 241
2 TraesCS3A01G202800 chr3A 93.038 158 8 3 5337 5493 699587121 699587276 1.540000e-55 228
3 TraesCS3A01G202800 chr3A 89.881 168 15 2 5148 5313 346991775 346991942 1.200000e-51 215
4 TraesCS3A01G202800 chr3A 91.447 152 10 3 5164 5313 54877715 54877565 7.210000e-49 206
5 TraesCS3A01G202800 chr3A 91.262 103 8 1 1 103 714312160 714312059 7.420000e-29 139
6 TraesCS3A01G202800 chr3A 92.308 91 7 0 1 91 204154498 204154588 4.470000e-26 130
7 TraesCS3A01G202800 chr3D 96.525 2302 50 12 2471 4771 269283367 269285639 0.000000e+00 3781
8 TraesCS3A01G202800 chr3D 92.845 1831 60 21 100 1885 269279900 269281704 0.000000e+00 2590
9 TraesCS3A01G202800 chr3D 94.340 583 33 0 1884 2466 269281797 269282379 0.000000e+00 894
10 TraesCS3A01G202800 chr3D 95.515 379 13 3 4772 5147 269285750 269286127 2.190000e-168 603
11 TraesCS3A01G202800 chr3D 95.604 91 4 0 1 91 178219225 178219315 4.430000e-31 147
12 TraesCS3A01G202800 chr3D 92.308 91 7 0 1 91 85882981 85883071 4.470000e-26 130
13 TraesCS3A01G202800 chr3D 92.308 91 7 0 1 91 465864248 465864338 4.470000e-26 130
14 TraesCS3A01G202800 chr6A 97.143 140 4 0 5354 5493 593410470 593410331 2.560000e-58 237
15 TraesCS3A01G202800 chr6A 95.205 146 6 1 5348 5493 524226878 524226734 4.280000e-56 230
16 TraesCS3A01G202800 chr6A 91.824 159 9 3 5162 5317 52151755 52151598 9.260000e-53 219
17 TraesCS3A01G202800 chr6A 89.423 104 11 0 1 104 16442914 16443017 1.240000e-26 132
18 TraesCS3A01G202800 chr6A 90.000 100 9 1 7 105 342523764 342523665 1.610000e-25 128
19 TraesCS3A01G202800 chr5A 97.143 140 4 0 5354 5493 35140036 35140175 2.560000e-58 237
20 TraesCS3A01G202800 chr5A 92.547 161 8 4 5162 5320 364976973 364976815 1.540000e-55 228
21 TraesCS3A01G202800 chr5A 92.903 155 8 3 5162 5314 474050201 474050354 7.160000e-54 222
22 TraesCS3A01G202800 chr5A 92.903 155 8 3 5162 5314 474183662 474183815 7.160000e-54 222
23 TraesCS3A01G202800 chr5A 92.258 155 9 3 5162 5314 474315855 474316008 3.330000e-52 217
24 TraesCS3A01G202800 chr5A 95.506 89 4 0 907 995 666716019 666715931 5.740000e-30 143
25 TraesCS3A01G202800 chr7A 97.143 140 3 1 5354 5493 579828476 579828338 9.200000e-58 235
26 TraesCS3A01G202800 chr7A 93.464 153 9 1 5162 5313 195395599 195395447 5.540000e-55 226
27 TraesCS3A01G202800 chr7A 92.308 91 7 0 1 91 631999527 631999617 4.470000e-26 130
28 TraesCS3A01G202800 chr4A 96.479 142 4 1 5352 5493 570498050 570497910 3.310000e-57 233
29 TraesCS3A01G202800 chr2A 92.547 161 8 4 5336 5493 612100542 612100701 1.540000e-55 228
30 TraesCS3A01G202800 chr1A 94.040 151 8 1 5343 5493 496520490 496520639 1.540000e-55 228
31 TraesCS3A01G202800 chr1A 94.505 91 5 0 1 91 533705748 533705838 2.060000e-29 141
32 TraesCS3A01G202800 chr4D 88.462 156 14 3 5162 5314 54796561 54796715 9.400000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G202800 chr3A 346951733 346957225 5492 True 10144 10144 100.00000 1 5493 1 chr3A.!!$R2 5492
1 TraesCS3A01G202800 chr3D 269279900 269286127 6227 False 1967 3781 94.80625 100 5147 4 chr3D.!!$F4 5047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
543 544 0.098728 CGCATTGAAGCCGGTTAAGG 59.901 55.0 1.90 0.0 0.0 2.69 F
544 545 0.455815 GCATTGAAGCCGGTTAAGGG 59.544 55.0 1.90 0.0 0.0 3.95 F
1756 1799 0.320421 AACCATCGGTCGTCAGGTTG 60.320 55.0 12.80 0.0 40.8 3.77 F
2114 2252 0.249676 TCACTCCTCGTCTCTAGCGT 59.750 55.0 0.00 0.0 0.0 5.07 F
2315 2453 0.962356 CGGAAACATCCCTGCTTGCT 60.962 55.0 0.00 0.0 0.0 3.91 F
3543 4664 0.601046 GCGGCGATGATGATGAGGAA 60.601 55.0 12.98 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1568 0.393808 GCCCCATGTGTCCGTAACAT 60.394 55.000 0.00 0.00 40.80 2.71 R
2065 2203 0.598680 CTCTCCCGTGATCGATTGGC 60.599 60.000 0.00 0.00 39.71 4.52 R
3426 4547 0.112995 TGATGAAACTGCAGGCCCTT 59.887 50.000 19.93 5.49 0.00 3.95 R
3531 4652 0.755079 CCGCCTCTTCCTCATCATCA 59.245 55.000 0.00 0.00 0.00 3.07 R
4298 5420 1.069022 GTACGTGCTGGTTGTCTCGTA 60.069 52.381 0.00 0.00 33.70 3.43 R
5473 6707 0.036306 ATCCCCGTTCTTTGAACGCT 59.964 50.000 22.42 7.97 41.85 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.033185 CCAACTTGCAACAGGTATATTTTACC 58.967 38.462 0.00 0.00 37.86 2.85
27 28 8.952278 CAACTTGCAACAGGTATATTTTACCTA 58.048 33.333 5.62 0.00 45.55 3.08
28 29 9.523168 AACTTGCAACAGGTATATTTTACCTAA 57.477 29.630 5.62 0.00 45.55 2.69
29 30 9.695155 ACTTGCAACAGGTATATTTTACCTAAT 57.305 29.630 5.62 0.00 45.55 1.73
73 74 7.737972 ATACCTAATATAAACGTGCATTGCA 57.262 32.000 7.38 7.38 35.60 4.08
157 158 1.000955 GGTCAGAAAGCGGTGAGAAGA 59.999 52.381 0.00 0.00 0.00 2.87
164 165 1.021390 AGCGGTGAGAAGATTTGCCG 61.021 55.000 0.00 0.00 41.79 5.69
212 213 2.356665 TTTGAGTGTAGCCAGGCAAA 57.643 45.000 15.80 0.00 0.00 3.68
233 234 1.656652 CCATCGTGGTCAGTCAATCC 58.343 55.000 0.00 0.00 31.35 3.01
254 255 3.443681 CCAAATTCGATACCCATATGGCC 59.556 47.826 16.97 0.00 37.83 5.36
258 259 2.265367 TCGATACCCATATGGCCATGT 58.735 47.619 29.04 19.88 37.83 3.21
269 270 5.394115 CCATATGGCCATGTGAATGATGATG 60.394 44.000 36.26 22.71 32.49 3.07
285 286 6.834168 TGATGATGCATCATGCTCATAAAT 57.166 33.333 39.76 18.06 46.84 1.40
293 294 6.037830 TGCATCATGCTCATAAATATGATCCG 59.962 38.462 11.84 0.00 45.31 4.18
310 311 2.183046 GTCCTCACCTCTGCGCTC 59.817 66.667 9.73 0.00 0.00 5.03
354 355 2.750350 CATCTGGCCGATACCCCC 59.250 66.667 9.31 0.00 0.00 5.40
369 370 2.737881 CCCCCGGTCGAAATAGCCA 61.738 63.158 0.00 0.00 0.00 4.75
430 431 3.116531 GTACGACGGCAGGGCAAC 61.117 66.667 0.00 0.00 0.00 4.17
538 539 2.852495 ATCGTCGCATTGAAGCCGGT 62.852 55.000 1.90 0.00 0.00 5.28
541 542 0.800012 GTCGCATTGAAGCCGGTTAA 59.200 50.000 1.90 0.00 0.00 2.01
543 544 0.098728 CGCATTGAAGCCGGTTAAGG 59.901 55.000 1.90 0.00 0.00 2.69
544 545 0.455815 GCATTGAAGCCGGTTAAGGG 59.544 55.000 1.90 0.00 0.00 3.95
545 546 1.953311 GCATTGAAGCCGGTTAAGGGA 60.953 52.381 1.90 0.00 0.00 4.20
546 547 2.442413 CATTGAAGCCGGTTAAGGGAA 58.558 47.619 1.90 0.00 0.00 3.97
574 575 1.084866 CCCCTTTCCCTTTCCCTTCT 58.915 55.000 0.00 0.00 0.00 2.85
617 618 6.659242 GTCGATCCCATCCATTTAAACCATAT 59.341 38.462 0.00 0.00 0.00 1.78
625 633 9.927668 CCATCCATTTAAACCATATTACAATCC 57.072 33.333 0.00 0.00 0.00 3.01
647 655 5.689068 TCCTTTTTCTTCTTCGTCGTCTTAC 59.311 40.000 0.00 0.00 0.00 2.34
652 660 2.888513 TCTTCGTCGTCTTACTTCGG 57.111 50.000 0.00 0.00 0.00 4.30
656 664 3.624326 TCGTCGTCTTACTTCGGAAAA 57.376 42.857 0.00 0.00 0.00 2.29
659 667 3.419655 CGTCGTCTTACTTCGGAAAAACG 60.420 47.826 0.00 0.00 0.00 3.60
698 706 7.247456 TCTACCAGTCTCACTATCTCGATAT 57.753 40.000 0.00 0.00 0.00 1.63
699 707 8.363761 TCTACCAGTCTCACTATCTCGATATA 57.636 38.462 0.00 0.00 0.00 0.86
700 708 8.983789 TCTACCAGTCTCACTATCTCGATATAT 58.016 37.037 0.00 0.00 0.00 0.86
704 712 8.503196 CCAGTCTCACTATCTCGATATATATGC 58.497 40.741 0.00 0.00 0.00 3.14
709 717 8.506168 TCACTATCTCGATATATATGCACACA 57.494 34.615 0.00 0.00 0.00 3.72
903 913 2.668457 CACAGAATACAGCACGAGGTTC 59.332 50.000 0.00 0.00 0.00 3.62
931 941 3.280920 CCGAATAGGCAGAGACAGC 57.719 57.895 0.00 0.00 0.00 4.40
932 942 0.749649 CCGAATAGGCAGAGACAGCT 59.250 55.000 0.00 0.00 0.00 4.24
1361 1375 5.351948 TTGTTCCTACATGCATGCTACTA 57.648 39.130 26.53 10.34 33.44 1.82
1362 1376 5.551305 TGTTCCTACATGCATGCTACTAT 57.449 39.130 26.53 8.52 0.00 2.12
1460 1476 2.996249 TCAGGTGCCAGATTGAGATC 57.004 50.000 0.00 0.00 0.00 2.75
1487 1503 2.031516 CCAACACTGCCTCTCTGCG 61.032 63.158 0.00 0.00 0.00 5.18
1506 1522 3.693578 TGCGGATGCTTAATCACAATTGA 59.306 39.130 13.59 0.00 43.34 2.57
1507 1523 4.157472 TGCGGATGCTTAATCACAATTGAA 59.843 37.500 13.59 0.00 43.34 2.69
1527 1543 1.227089 CTTGCGCGCTGTCCTCTAT 60.227 57.895 33.29 0.00 0.00 1.98
1541 1557 6.435904 GCTGTCCTCTATCAGTATACCTCAAT 59.564 42.308 0.00 0.00 34.57 2.57
1542 1558 7.039363 GCTGTCCTCTATCAGTATACCTCAATT 60.039 40.741 0.00 0.00 34.57 2.32
1552 1568 0.687920 TACCTCAATTGGCCACGTCA 59.312 50.000 3.88 0.00 0.00 4.35
1554 1570 0.452987 CCTCAATTGGCCACGTCATG 59.547 55.000 3.88 0.00 0.00 3.07
1710 1753 1.140852 CCTCTTGGTGAGTGGTGACAA 59.859 52.381 0.00 0.00 46.06 3.18
1728 1771 4.342378 TGACAACCTCTACATATGCTCTCC 59.658 45.833 1.58 0.00 0.00 3.71
1756 1799 0.320421 AACCATCGGTCGTCAGGTTG 60.320 55.000 12.80 0.00 40.80 3.77
1789 1832 1.000163 ACTGATCAAGTCGACTGCGTT 60.000 47.619 20.85 8.63 31.64 4.84
1808 1851 7.117236 ACTGCGTTTCTAAATCTTGATTAACGA 59.883 33.333 22.39 12.52 39.36 3.85
1809 1852 7.970384 TGCGTTTCTAAATCTTGATTAACGAT 58.030 30.769 22.39 2.86 39.36 3.73
1844 1887 9.269453 TGTGAGATCATCTATTGAATCAATGAC 57.731 33.333 17.93 4.40 38.03 3.06
1845 1888 9.269453 GTGAGATCATCTATTGAATCAATGACA 57.731 33.333 17.93 2.71 38.03 3.58
1846 1889 9.841295 TGAGATCATCTATTGAATCAATGACAA 57.159 29.630 17.93 6.44 38.03 3.18
1876 1919 7.576750 TTGTGTCTTGCTCGTTAATTAGTAG 57.423 36.000 0.00 0.00 0.00 2.57
1877 1920 6.684686 TGTGTCTTGCTCGTTAATTAGTAGT 58.315 36.000 0.00 0.00 0.00 2.73
1878 1921 6.584942 TGTGTCTTGCTCGTTAATTAGTAGTG 59.415 38.462 0.00 0.00 0.00 2.74
1880 1923 6.098017 GTCTTGCTCGTTAATTAGTAGTGGT 58.902 40.000 0.00 0.00 0.00 4.16
1881 1924 6.034683 GTCTTGCTCGTTAATTAGTAGTGGTG 59.965 42.308 0.00 0.00 0.00 4.17
1882 1925 5.648178 TGCTCGTTAATTAGTAGTGGTGA 57.352 39.130 0.00 0.00 0.00 4.02
1961 2099 6.699575 AAATGGCACTTTAATAGAATCGCT 57.300 33.333 0.00 0.00 0.00 4.93
2021 2159 1.812686 TATCATACCCGTGAGCCGCC 61.813 60.000 0.00 0.00 34.38 6.13
2022 2160 4.155733 CATACCCGTGAGCCGCCA 62.156 66.667 0.00 0.00 34.38 5.69
2038 2176 1.533756 CGCCATATTTGAAGGTTGCGG 60.534 52.381 0.00 0.00 37.33 5.69
2042 2180 0.885196 TATTTGAAGGTTGCGGGCAC 59.115 50.000 0.00 0.00 0.00 5.01
2054 2192 2.203480 GGGCACTGGTTTGGAGCA 60.203 61.111 0.00 0.00 0.00 4.26
2058 2196 2.186160 CACTGGTTTGGAGCACGCA 61.186 57.895 0.00 0.00 0.00 5.24
2060 2198 2.904866 TGGTTTGGAGCACGCACC 60.905 61.111 0.00 0.00 0.00 5.01
2064 2202 1.073025 TTTGGAGCACGCACCATCT 59.927 52.632 9.06 0.00 36.62 2.90
2065 2203 1.236616 TTTGGAGCACGCACCATCTG 61.237 55.000 9.06 0.00 36.62 2.90
2076 2214 1.957668 CACCATCTGCCAATCGATCA 58.042 50.000 0.00 0.00 0.00 2.92
2083 2221 1.326951 TGCCAATCGATCACGGGAGA 61.327 55.000 0.00 0.00 40.21 3.71
2114 2252 0.249676 TCACTCCTCGTCTCTAGCGT 59.750 55.000 0.00 0.00 0.00 5.07
2121 2259 2.978824 GTCTCTAGCGTTGGGCCA 59.021 61.111 0.00 0.00 45.17 5.36
2176 2314 4.586841 CCCTGGAGTACTCTAGAAAGATGG 59.413 50.000 31.49 20.67 40.16 3.51
2184 2322 8.283699 AGTACTCTAGAAAGATGGTGTACTTC 57.716 38.462 9.99 0.00 36.98 3.01
2217 2355 1.398390 CCATCTCGTAAACCTTGCTGC 59.602 52.381 0.00 0.00 0.00 5.25
2314 2452 1.244019 ACGGAAACATCCCTGCTTGC 61.244 55.000 0.00 0.00 0.00 4.01
2315 2453 0.962356 CGGAAACATCCCTGCTTGCT 60.962 55.000 0.00 0.00 0.00 3.91
2345 2483 2.503331 TCACGAGTTGGCATTTGTGAT 58.497 42.857 14.98 0.00 31.93 3.06
2428 2566 5.948758 TGAACATGTGCCCTTGTATATTGAA 59.051 36.000 0.00 0.00 0.00 2.69
2430 2568 5.754782 ACATGTGCCCTTGTATATTGAAGA 58.245 37.500 0.00 0.00 0.00 2.87
2441 2579 8.153550 CCTTGTATATTGAAGAAGACTATGGCT 58.846 37.037 0.00 0.00 0.00 4.75
2466 2604 1.000938 GCCAAAGTCAAGAGTGCAAGG 60.001 52.381 0.00 0.00 0.00 3.61
2468 2606 1.677576 CAAAGTCAAGAGTGCAAGGCA 59.322 47.619 0.00 0.00 35.60 4.75
2504 3625 1.277842 TGCTCCCGCAATTTAGTCTCA 59.722 47.619 0.00 0.00 44.62 3.27
2514 3635 5.164061 CGCAATTTAGTCTCAATTTTGGTGC 60.164 40.000 0.00 0.00 0.00 5.01
2515 3636 5.928264 GCAATTTAGTCTCAATTTTGGTGCT 59.072 36.000 0.00 0.00 0.00 4.40
2516 3637 7.090173 GCAATTTAGTCTCAATTTTGGTGCTA 58.910 34.615 0.00 0.00 0.00 3.49
2517 3638 7.598493 GCAATTTAGTCTCAATTTTGGTGCTAA 59.402 33.333 0.00 0.00 0.00 3.09
2518 3639 8.915654 CAATTTAGTCTCAATTTTGGTGCTAAC 58.084 33.333 0.00 0.00 0.00 2.34
2519 3640 7.575414 TTTAGTCTCAATTTTGGTGCTAACA 57.425 32.000 0.00 0.00 0.00 2.41
2520 3641 5.438761 AGTCTCAATTTTGGTGCTAACAC 57.561 39.130 0.00 0.00 46.66 3.32
2525 3646 7.224557 GTCTCAATTTTGGTGCTAACACAAAAT 59.775 33.333 0.00 8.34 46.60 1.82
2530 3651 9.606631 AATTTTGGTGCTAACACAAAATCTAAA 57.393 25.926 13.04 2.72 46.60 1.85
2548 3669 6.795098 TCTAAAACTTGTGCATATTGTCGT 57.205 33.333 0.00 0.00 0.00 4.34
2580 3701 7.315142 CCAGCAAGTGTTGATGTGTTATAATT 58.685 34.615 4.38 0.00 45.11 1.40
2681 3802 1.523258 CATTCCTCTGGCTGAGCGG 60.523 63.158 15.25 4.74 41.35 5.52
2722 3843 2.840296 GCATTTGCTCCTCTTGCTAC 57.160 50.000 0.00 0.00 38.21 3.58
2724 3845 2.019984 CATTTGCTCCTCTTGCTACCC 58.980 52.381 0.00 0.00 0.00 3.69
2759 3880 2.866762 CGGGATGCTTTAACTGTAGCTC 59.133 50.000 0.00 0.00 38.22 4.09
2863 3984 1.826720 TGGCCCCACTAGTAAGTAACG 59.173 52.381 0.00 0.00 33.48 3.18
2866 3987 1.202336 CCCCACTAGTAAGTAACGCGG 60.202 57.143 12.47 0.00 33.48 6.46
2888 4009 4.285260 GGATCCACCCCAAACTACGTATAT 59.715 45.833 6.95 0.00 0.00 0.86
2897 4018 8.001292 ACCCCAAACTACGTATATTCTACTACT 58.999 37.037 0.00 0.00 0.00 2.57
2898 4019 9.507329 CCCCAAACTACGTATATTCTACTACTA 57.493 37.037 0.00 0.00 0.00 1.82
2901 4022 9.522454 CAAACTACGTATATTCTACTACTACGC 57.478 37.037 0.00 0.00 38.90 4.42
2903 4024 8.459521 ACTACGTATATTCTACTACTACGCAG 57.540 38.462 0.00 0.00 38.90 5.18
2905 4026 9.561270 CTACGTATATTCTACTACTACGCAGTA 57.439 37.037 0.00 0.00 45.11 2.74
2906 4027 8.994429 ACGTATATTCTACTACTACGCAGTAT 57.006 34.615 0.00 0.00 44.56 2.12
2914 4035 8.899427 TCTACTACTACGCAGTATATTTCTGT 57.101 34.615 0.00 0.00 44.56 3.41
2954 4075 9.647797 AACATCTATGTGTTGTTAATTACTCGA 57.352 29.630 0.00 0.00 40.60 4.04
3227 4348 2.751259 GCATTTCTCAATCTCAGCACCA 59.249 45.455 0.00 0.00 0.00 4.17
3258 4379 4.760204 AGTTGCAACGCCTAATTTTAGACT 59.240 37.500 23.21 0.00 32.47 3.24
3426 4547 2.601666 ACGGTGCTGGAGCTCTCA 60.602 61.111 14.64 9.11 42.66 3.27
3528 4649 2.203126 CAGGAGATTGAGGGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
3531 4652 2.423446 GAGATTGAGGGCGGCGAT 59.577 61.111 12.98 0.00 0.00 4.58
3534 4655 1.302033 GATTGAGGGCGGCGATGAT 60.302 57.895 12.98 0.00 0.00 2.45
3537 4658 2.043604 TTGAGGGCGGCGATGATGAT 62.044 55.000 12.98 0.00 0.00 2.45
3543 4664 0.601046 GCGGCGATGATGATGAGGAA 60.601 55.000 12.98 0.00 0.00 3.36
3600 4721 3.262660 GGCTCATCCTCATGACCATCATA 59.737 47.826 0.00 0.00 34.28 2.15
4032 5153 6.604795 CCTCCAGGTAAAAATCATCATTCAGT 59.395 38.462 0.00 0.00 0.00 3.41
4033 5154 7.201767 CCTCCAGGTAAAAATCATCATTCAGTC 60.202 40.741 0.00 0.00 0.00 3.51
4034 5155 7.174413 TCCAGGTAAAAATCATCATTCAGTCA 58.826 34.615 0.00 0.00 0.00 3.41
4035 5156 7.835682 TCCAGGTAAAAATCATCATTCAGTCAT 59.164 33.333 0.00 0.00 0.00 3.06
4036 5157 8.133627 CCAGGTAAAAATCATCATTCAGTCATC 58.866 37.037 0.00 0.00 0.00 2.92
4037 5158 8.680001 CAGGTAAAAATCATCATTCAGTCATCA 58.320 33.333 0.00 0.00 0.00 3.07
4038 5159 9.417561 AGGTAAAAATCATCATTCAGTCATCAT 57.582 29.630 0.00 0.00 0.00 2.45
4042 5163 9.803315 AAAAATCATCATTCAGTCATCATTCAG 57.197 29.630 0.00 0.00 0.00 3.02
4050 5171 7.392393 TCATTCAGTCATCATTCAGACAAACAT 59.608 33.333 0.00 0.00 37.23 2.71
4074 5195 3.414269 GTCGGTGAGGGAATTTTAACCA 58.586 45.455 0.00 0.00 0.00 3.67
4286 5408 1.217882 GCTACATTGTTATCGGCGCT 58.782 50.000 7.64 0.00 0.00 5.92
4298 5420 1.008538 CGGCGCTTGCTTCTTTGTT 60.009 52.632 7.64 0.00 39.13 2.83
4351 5473 6.366061 TGACGACAGTAACAAATCAAGATCTG 59.634 38.462 0.00 0.00 0.00 2.90
4362 5484 7.592938 ACAAATCAAGATCTGTTTATTTGCGA 58.407 30.769 20.86 1.25 37.67 5.10
4366 5488 7.144722 TCAAGATCTGTTTATTTGCGATTGT 57.855 32.000 0.00 0.00 0.00 2.71
4388 5510 2.682856 TGTGCAGTCCACTTCTTGTTTC 59.317 45.455 0.00 0.00 44.92 2.78
4390 5512 1.264288 GCAGTCCACTTCTTGTTTCGG 59.736 52.381 0.00 0.00 0.00 4.30
4437 5559 1.006825 TTGACAGATCACGCGAACGG 61.007 55.000 15.93 4.18 46.04 4.44
4782 6014 2.203983 TTCTCCAGGGCTGCCTCA 60.204 61.111 19.68 0.00 0.00 3.86
4815 6047 1.488957 GTGCAAGACAGCGAACGAG 59.511 57.895 0.00 0.00 37.31 4.18
4854 6088 6.128445 GCCACCAAATTCTGTCTATCATATCG 60.128 42.308 0.00 0.00 0.00 2.92
4903 6137 2.290071 GGAAGAGAATTCCCCGTGTCAA 60.290 50.000 0.65 0.00 32.48 3.18
4904 6138 2.770164 AGAGAATTCCCCGTGTCAAG 57.230 50.000 0.65 0.00 0.00 3.02
4905 6139 2.257207 AGAGAATTCCCCGTGTCAAGA 58.743 47.619 0.65 0.00 0.00 3.02
4906 6140 2.234908 AGAGAATTCCCCGTGTCAAGAG 59.765 50.000 0.65 0.00 0.00 2.85
4907 6141 1.978580 AGAATTCCCCGTGTCAAGAGT 59.021 47.619 0.65 0.00 0.00 3.24
4926 6160 1.405463 GTCCCATCCAAAAGGAATCGC 59.595 52.381 0.00 0.00 0.00 4.58
4997 6231 8.539062 TCTTTATTTTCTCGAATCGTACGTAG 57.461 34.615 16.05 6.58 0.00 3.51
5043 6277 7.833786 TCTTGTATATTGTCTAGGTTGTTCGT 58.166 34.615 0.00 0.00 0.00 3.85
5114 6348 4.083484 GCATCAGTGGGTTGTTACAGTTAC 60.083 45.833 0.00 0.00 0.00 2.50
5117 6351 2.158928 AGTGGGTTGTTACAGTTACGCA 60.159 45.455 2.06 2.06 0.00 5.24
5123 6357 4.449743 GGTTGTTACAGTTACGCAGATCAA 59.550 41.667 0.00 0.00 0.00 2.57
5154 6388 0.098200 CAATGATGCAGACAGTGGCG 59.902 55.000 13.69 0.00 31.17 5.69
5155 6389 1.028330 AATGATGCAGACAGTGGCGG 61.028 55.000 0.00 0.00 0.00 6.13
5156 6390 1.902765 ATGATGCAGACAGTGGCGGA 61.903 55.000 0.00 0.00 0.00 5.54
5157 6391 1.812922 GATGCAGACAGTGGCGGAG 60.813 63.158 0.00 0.00 0.00 4.63
5184 6418 6.785191 AGCCAACTGATGTTAAATAATGTCG 58.215 36.000 0.00 0.00 34.60 4.35
5185 6419 5.971202 GCCAACTGATGTTAAATAATGTCGG 59.029 40.000 0.00 0.00 34.60 4.79
5186 6420 6.494842 CCAACTGATGTTAAATAATGTCGGG 58.505 40.000 0.00 0.00 34.60 5.14
5187 6421 6.459573 CCAACTGATGTTAAATAATGTCGGGG 60.460 42.308 0.00 0.00 34.60 5.73
5188 6422 5.996644 ACTGATGTTAAATAATGTCGGGGA 58.003 37.500 0.00 0.00 0.00 4.81
5189 6423 6.055588 ACTGATGTTAAATAATGTCGGGGAG 58.944 40.000 0.00 0.00 0.00 4.30
5190 6424 5.373222 TGATGTTAAATAATGTCGGGGAGG 58.627 41.667 0.00 0.00 0.00 4.30
5191 6425 4.159244 TGTTAAATAATGTCGGGGAGGG 57.841 45.455 0.00 0.00 0.00 4.30
5192 6426 2.882761 GTTAAATAATGTCGGGGAGGGC 59.117 50.000 0.00 0.00 0.00 5.19
5193 6427 0.185175 AAATAATGTCGGGGAGGGCC 59.815 55.000 0.00 0.00 0.00 5.80
5194 6428 0.991355 AATAATGTCGGGGAGGGCCA 60.991 55.000 6.18 0.00 35.15 5.36
5195 6429 0.991355 ATAATGTCGGGGAGGGCCAA 60.991 55.000 6.18 0.00 35.15 4.52
5196 6430 1.208844 TAATGTCGGGGAGGGCCAAA 61.209 55.000 6.18 0.00 35.15 3.28
5197 6431 2.087857 AATGTCGGGGAGGGCCAAAA 62.088 55.000 6.18 0.00 35.15 2.44
5198 6432 2.675423 GTCGGGGAGGGCCAAAAC 60.675 66.667 6.18 0.00 35.15 2.43
5199 6433 3.974293 TCGGGGAGGGCCAAAACC 61.974 66.667 6.18 3.23 35.15 3.27
5200 6434 4.293671 CGGGGAGGGCCAAAACCA 62.294 66.667 6.18 0.00 35.15 3.67
5201 6435 2.283894 GGGGAGGGCCAAAACCAG 60.284 66.667 6.18 0.00 35.15 4.00
5202 6436 2.997315 GGGAGGGCCAAAACCAGC 60.997 66.667 6.18 0.00 35.15 4.85
5203 6437 2.203625 GGAGGGCCAAAACCAGCA 60.204 61.111 6.18 0.00 0.00 4.41
5204 6438 1.836604 GGAGGGCCAAAACCAGCAA 60.837 57.895 6.18 0.00 0.00 3.91
5205 6439 1.406860 GGAGGGCCAAAACCAGCAAA 61.407 55.000 6.18 0.00 0.00 3.68
5206 6440 0.467804 GAGGGCCAAAACCAGCAAAA 59.532 50.000 6.18 0.00 0.00 2.44
5207 6441 1.072173 GAGGGCCAAAACCAGCAAAAT 59.928 47.619 6.18 0.00 0.00 1.82
5208 6442 1.072173 AGGGCCAAAACCAGCAAAATC 59.928 47.619 6.18 0.00 0.00 2.17
5209 6443 1.202746 GGGCCAAAACCAGCAAAATCA 60.203 47.619 4.39 0.00 0.00 2.57
5210 6444 2.552809 GGGCCAAAACCAGCAAAATCAT 60.553 45.455 4.39 0.00 0.00 2.45
5211 6445 2.743664 GGCCAAAACCAGCAAAATCATC 59.256 45.455 0.00 0.00 0.00 2.92
5212 6446 3.401182 GCCAAAACCAGCAAAATCATCA 58.599 40.909 0.00 0.00 0.00 3.07
5213 6447 4.004982 GCCAAAACCAGCAAAATCATCAT 58.995 39.130 0.00 0.00 0.00 2.45
5214 6448 5.177326 GCCAAAACCAGCAAAATCATCATA 58.823 37.500 0.00 0.00 0.00 2.15
5215 6449 5.642919 GCCAAAACCAGCAAAATCATCATAA 59.357 36.000 0.00 0.00 0.00 1.90
5216 6450 6.149142 GCCAAAACCAGCAAAATCATCATAAA 59.851 34.615 0.00 0.00 0.00 1.40
5217 6451 7.148205 GCCAAAACCAGCAAAATCATCATAAAT 60.148 33.333 0.00 0.00 0.00 1.40
5218 6452 9.381033 CCAAAACCAGCAAAATCATCATAAATA 57.619 29.630 0.00 0.00 0.00 1.40
5220 6454 9.941325 AAAACCAGCAAAATCATCATAAATACA 57.059 25.926 0.00 0.00 0.00 2.29
5221 6455 8.931385 AACCAGCAAAATCATCATAAATACAC 57.069 30.769 0.00 0.00 0.00 2.90
5222 6456 8.065473 ACCAGCAAAATCATCATAAATACACA 57.935 30.769 0.00 0.00 0.00 3.72
5223 6457 8.530311 ACCAGCAAAATCATCATAAATACACAA 58.470 29.630 0.00 0.00 0.00 3.33
5224 6458 9.537192 CCAGCAAAATCATCATAAATACACAAT 57.463 29.630 0.00 0.00 0.00 2.71
5234 6468 9.481800 CATCATAAATACACAATATTAGCAGCG 57.518 33.333 0.00 0.00 0.00 5.18
5235 6469 8.028540 TCATAAATACACAATATTAGCAGCGG 57.971 34.615 0.00 0.00 0.00 5.52
5236 6470 7.875554 TCATAAATACACAATATTAGCAGCGGA 59.124 33.333 0.00 0.00 0.00 5.54
5237 6471 8.668353 CATAAATACACAATATTAGCAGCGGAT 58.332 33.333 0.00 0.00 0.00 4.18
5238 6472 9.884636 ATAAATACACAATATTAGCAGCGGATA 57.115 29.630 0.00 0.00 0.00 2.59
5239 6473 8.615878 AAATACACAATATTAGCAGCGGATAA 57.384 30.769 0.00 0.00 0.00 1.75
5240 6474 8.792830 AATACACAATATTAGCAGCGGATAAT 57.207 30.769 11.93 11.93 38.94 1.28
5241 6475 6.727824 ACACAATATTAGCAGCGGATAATC 57.272 37.500 10.64 0.00 36.93 1.75
5242 6476 5.643777 ACACAATATTAGCAGCGGATAATCC 59.356 40.000 10.64 0.00 36.93 3.01
5243 6477 5.065218 CACAATATTAGCAGCGGATAATCCC 59.935 44.000 10.64 0.00 36.93 3.85
5244 6478 5.045578 ACAATATTAGCAGCGGATAATCCCT 60.046 40.000 10.64 0.00 36.93 4.20
5245 6479 3.618690 ATTAGCAGCGGATAATCCCTC 57.381 47.619 1.29 0.00 30.00 4.30
5246 6480 0.888619 TAGCAGCGGATAATCCCTCG 59.111 55.000 0.00 0.00 31.13 4.63
5247 6481 1.115930 AGCAGCGGATAATCCCTCGT 61.116 55.000 0.00 0.00 31.13 4.18
5248 6482 0.601558 GCAGCGGATAATCCCTCGTA 59.398 55.000 0.00 0.00 31.13 3.43
5249 6483 1.204941 GCAGCGGATAATCCCTCGTAT 59.795 52.381 0.00 0.00 31.13 3.06
5250 6484 2.426024 GCAGCGGATAATCCCTCGTATA 59.574 50.000 0.00 0.00 31.13 1.47
5251 6485 3.489398 GCAGCGGATAATCCCTCGTATAG 60.489 52.174 0.00 0.00 31.13 1.31
5252 6486 3.695060 CAGCGGATAATCCCTCGTATAGT 59.305 47.826 0.00 0.00 31.13 2.12
5253 6487 3.695060 AGCGGATAATCCCTCGTATAGTG 59.305 47.826 0.00 0.00 31.13 2.74
5254 6488 3.181489 GCGGATAATCCCTCGTATAGTGG 60.181 52.174 0.00 0.00 31.13 4.00
5255 6489 3.181489 CGGATAATCCCTCGTATAGTGGC 60.181 52.174 0.00 0.00 31.13 5.01
5256 6490 3.767673 GGATAATCCCTCGTATAGTGGCA 59.232 47.826 0.00 0.00 32.31 4.92
5257 6491 4.222145 GGATAATCCCTCGTATAGTGGCAA 59.778 45.833 0.00 0.00 32.31 4.52
5258 6492 5.279809 GGATAATCCCTCGTATAGTGGCAAA 60.280 44.000 0.00 0.00 32.31 3.68
5259 6493 4.497291 AATCCCTCGTATAGTGGCAAAA 57.503 40.909 0.00 0.00 32.31 2.44
5260 6494 4.706842 ATCCCTCGTATAGTGGCAAAAT 57.293 40.909 0.00 0.00 32.31 1.82
5261 6495 4.067972 TCCCTCGTATAGTGGCAAAATC 57.932 45.455 0.00 0.00 32.31 2.17
5262 6496 3.709653 TCCCTCGTATAGTGGCAAAATCT 59.290 43.478 0.00 0.00 32.31 2.40
5263 6497 3.809832 CCCTCGTATAGTGGCAAAATCTG 59.190 47.826 0.00 0.00 32.31 2.90
5276 6510 3.581755 CAAAATCTGCATGTTGACCTGG 58.418 45.455 0.00 0.00 29.34 4.45
5277 6511 1.843368 AATCTGCATGTTGACCTGGG 58.157 50.000 0.00 0.00 0.00 4.45
5278 6512 0.682209 ATCTGCATGTTGACCTGGGC 60.682 55.000 0.00 0.00 0.00 5.36
5279 6513 2.283101 TGCATGTTGACCTGGGCC 60.283 61.111 0.00 0.00 0.00 5.80
5280 6514 3.443045 GCATGTTGACCTGGGCCG 61.443 66.667 0.00 0.00 0.00 6.13
5281 6515 2.751436 CATGTTGACCTGGGCCGG 60.751 66.667 5.01 5.01 0.00 6.13
5282 6516 4.047125 ATGTTGACCTGGGCCGGG 62.047 66.667 30.32 30.32 35.68 5.73
5300 6534 3.801997 CCCCTGCTAGCACCCCTG 61.802 72.222 14.93 3.32 0.00 4.45
5301 6535 4.496336 CCCTGCTAGCACCCCTGC 62.496 72.222 14.93 0.00 44.63 4.85
5302 6536 4.496336 CCTGCTAGCACCCCTGCC 62.496 72.222 14.93 0.00 45.53 4.85
5303 6537 3.406200 CTGCTAGCACCCCTGCCT 61.406 66.667 14.93 0.00 45.53 4.75
5304 6538 3.397613 CTGCTAGCACCCCTGCCTC 62.398 68.421 14.93 0.00 45.53 4.70
5305 6539 3.086600 GCTAGCACCCCTGCCTCT 61.087 66.667 10.63 0.00 45.53 3.69
5306 6540 1.762460 GCTAGCACCCCTGCCTCTA 60.762 63.158 10.63 0.00 45.53 2.43
5307 6541 2.034048 GCTAGCACCCCTGCCTCTAC 62.034 65.000 10.63 0.00 45.53 2.59
5308 6542 1.382695 TAGCACCCCTGCCTCTACC 60.383 63.158 0.00 0.00 45.53 3.18
5309 6543 2.176202 TAGCACCCCTGCCTCTACCA 62.176 60.000 0.00 0.00 45.53 3.25
5310 6544 2.990479 CACCCCTGCCTCTACCAC 59.010 66.667 0.00 0.00 0.00 4.16
5311 6545 1.613630 CACCCCTGCCTCTACCACT 60.614 63.158 0.00 0.00 0.00 4.00
5312 6546 1.613630 ACCCCTGCCTCTACCACTG 60.614 63.158 0.00 0.00 0.00 3.66
5313 6547 2.586792 CCCTGCCTCTACCACTGC 59.413 66.667 0.00 0.00 0.00 4.40
5314 6548 2.185350 CCTGCCTCTACCACTGCG 59.815 66.667 0.00 0.00 0.00 5.18
5315 6549 2.510238 CTGCCTCTACCACTGCGC 60.510 66.667 0.00 0.00 0.00 6.09
5316 6550 3.300934 CTGCCTCTACCACTGCGCA 62.301 63.158 10.98 10.98 0.00 6.09
5317 6551 2.815647 GCCTCTACCACTGCGCAC 60.816 66.667 5.66 0.00 0.00 5.34
5318 6552 2.656646 CCTCTACCACTGCGCACA 59.343 61.111 5.66 0.00 0.00 4.57
5319 6553 1.738099 CCTCTACCACTGCGCACAC 60.738 63.158 5.66 0.00 0.00 3.82
5320 6554 2.049526 TCTACCACTGCGCACACG 60.050 61.111 5.66 0.00 44.07 4.49
5321 6555 2.049526 CTACCACTGCGCACACGA 60.050 61.111 5.66 0.00 43.93 4.35
5322 6556 1.663388 CTACCACTGCGCACACGAA 60.663 57.895 5.66 0.00 43.93 3.85
5323 6557 1.218875 CTACCACTGCGCACACGAAA 61.219 55.000 5.66 0.00 43.93 3.46
5324 6558 0.810426 TACCACTGCGCACACGAAAA 60.810 50.000 5.66 0.00 43.93 2.29
5325 6559 1.369209 CCACTGCGCACACGAAAAG 60.369 57.895 5.66 0.00 43.93 2.27
5326 6560 1.641140 CACTGCGCACACGAAAAGA 59.359 52.632 5.66 0.00 43.93 2.52
5327 6561 0.383491 CACTGCGCACACGAAAAGAG 60.383 55.000 5.66 0.00 43.93 2.85
5328 6562 0.529773 ACTGCGCACACGAAAAGAGA 60.530 50.000 5.66 0.00 43.93 3.10
5329 6563 0.792640 CTGCGCACACGAAAAGAGAT 59.207 50.000 5.66 0.00 43.93 2.75
5330 6564 1.992667 CTGCGCACACGAAAAGAGATA 59.007 47.619 5.66 0.00 43.93 1.98
5331 6565 2.409012 TGCGCACACGAAAAGAGATAA 58.591 42.857 5.66 0.00 43.93 1.75
5332 6566 2.803386 TGCGCACACGAAAAGAGATAAA 59.197 40.909 5.66 0.00 43.93 1.40
5333 6567 3.248841 TGCGCACACGAAAAGAGATAAAA 59.751 39.130 5.66 0.00 43.93 1.52
5334 6568 3.840763 GCGCACACGAAAAGAGATAAAAG 59.159 43.478 0.30 0.00 43.93 2.27
5335 6569 4.377022 GCGCACACGAAAAGAGATAAAAGA 60.377 41.667 0.30 0.00 43.93 2.52
5336 6570 5.308927 CGCACACGAAAAGAGATAAAAGAG 58.691 41.667 0.00 0.00 43.93 2.85
5337 6571 5.118664 CGCACACGAAAAGAGATAAAAGAGA 59.881 40.000 0.00 0.00 43.93 3.10
5338 6572 6.300356 GCACACGAAAAGAGATAAAAGAGAC 58.700 40.000 0.00 0.00 0.00 3.36
5339 6573 6.073765 GCACACGAAAAGAGATAAAAGAGACA 60.074 38.462 0.00 0.00 0.00 3.41
5340 6574 7.284351 CACACGAAAAGAGATAAAAGAGACAC 58.716 38.462 0.00 0.00 0.00 3.67
5341 6575 6.424207 ACACGAAAAGAGATAAAAGAGACACC 59.576 38.462 0.00 0.00 0.00 4.16
5342 6576 5.634020 ACGAAAAGAGATAAAAGAGACACCG 59.366 40.000 0.00 0.00 0.00 4.94
5343 6577 5.862323 CGAAAAGAGATAAAAGAGACACCGA 59.138 40.000 0.00 0.00 0.00 4.69
5344 6578 6.365247 CGAAAAGAGATAAAAGAGACACCGAA 59.635 38.462 0.00 0.00 0.00 4.30
5345 6579 7.410942 CGAAAAGAGATAAAAGAGACACCGAAG 60.411 40.741 0.00 0.00 0.00 3.79
5360 6594 2.024176 CGAAGGACATAGTGTTGGGG 57.976 55.000 0.00 0.00 0.00 4.96
5361 6595 1.553248 CGAAGGACATAGTGTTGGGGA 59.447 52.381 0.00 0.00 0.00 4.81
5362 6596 2.027561 CGAAGGACATAGTGTTGGGGAA 60.028 50.000 0.00 0.00 0.00 3.97
5363 6597 3.370527 CGAAGGACATAGTGTTGGGGAAT 60.371 47.826 0.00 0.00 0.00 3.01
5364 6598 3.652057 AGGACATAGTGTTGGGGAATG 57.348 47.619 0.00 0.00 0.00 2.67
5365 6599 2.919602 AGGACATAGTGTTGGGGAATGT 59.080 45.455 0.00 0.00 0.00 2.71
5366 6600 3.333680 AGGACATAGTGTTGGGGAATGTT 59.666 43.478 0.00 0.00 0.00 2.71
5367 6601 3.443681 GGACATAGTGTTGGGGAATGTTG 59.556 47.826 0.00 0.00 0.00 3.33
5368 6602 2.825532 ACATAGTGTTGGGGAATGTTGC 59.174 45.455 0.00 0.00 0.00 4.17
5369 6603 2.666272 TAGTGTTGGGGAATGTTGCA 57.334 45.000 0.00 0.00 0.00 4.08
5370 6604 1.331214 AGTGTTGGGGAATGTTGCAG 58.669 50.000 0.00 0.00 0.00 4.41
5371 6605 1.133513 AGTGTTGGGGAATGTTGCAGA 60.134 47.619 0.00 0.00 0.00 4.26
5372 6606 1.686052 GTGTTGGGGAATGTTGCAGAA 59.314 47.619 0.00 0.00 0.00 3.02
5373 6607 2.102252 GTGTTGGGGAATGTTGCAGAAA 59.898 45.455 0.00 0.00 0.00 2.52
5374 6608 2.768527 TGTTGGGGAATGTTGCAGAAAA 59.231 40.909 0.00 0.00 0.00 2.29
5375 6609 3.130633 GTTGGGGAATGTTGCAGAAAAC 58.869 45.455 0.00 0.00 0.00 2.43
5376 6610 2.392662 TGGGGAATGTTGCAGAAAACA 58.607 42.857 0.00 0.00 43.82 2.83
5377 6611 2.768527 TGGGGAATGTTGCAGAAAACAA 59.231 40.909 0.00 0.00 42.98 2.83
5378 6612 3.198635 TGGGGAATGTTGCAGAAAACAAA 59.801 39.130 0.00 0.00 42.98 2.83
5379 6613 4.141528 TGGGGAATGTTGCAGAAAACAAAT 60.142 37.500 0.00 0.00 42.98 2.32
5380 6614 4.821260 GGGGAATGTTGCAGAAAACAAATT 59.179 37.500 0.00 0.00 42.98 1.82
5381 6615 5.299028 GGGGAATGTTGCAGAAAACAAATTT 59.701 36.000 0.00 0.00 42.98 1.82
5382 6616 6.183360 GGGGAATGTTGCAGAAAACAAATTTT 60.183 34.615 0.00 0.00 42.98 1.82
5383 6617 6.692249 GGGAATGTTGCAGAAAACAAATTTTG 59.308 34.615 7.59 7.59 42.98 2.44
5399 6633 7.955502 ACAAATTTTGTTTCTACGTTTTCACC 58.044 30.769 8.97 0.00 42.22 4.02
5400 6634 7.599245 ACAAATTTTGTTTCTACGTTTTCACCA 59.401 29.630 8.97 0.00 42.22 4.17
5401 6635 8.436200 CAAATTTTGTTTCTACGTTTTCACCAA 58.564 29.630 0.00 0.00 0.00 3.67
5402 6636 7.749539 ATTTTGTTTCTACGTTTTCACCAAG 57.250 32.000 0.00 0.00 0.00 3.61
5403 6637 6.497785 TTTGTTTCTACGTTTTCACCAAGA 57.502 33.333 0.00 0.00 0.00 3.02
5404 6638 6.687081 TTGTTTCTACGTTTTCACCAAGAT 57.313 33.333 0.00 0.00 0.00 2.40
5405 6639 6.295039 TGTTTCTACGTTTTCACCAAGATC 57.705 37.500 0.00 0.00 0.00 2.75
5406 6640 5.237779 TGTTTCTACGTTTTCACCAAGATCC 59.762 40.000 0.00 0.00 0.00 3.36
5407 6641 4.610605 TCTACGTTTTCACCAAGATCCA 57.389 40.909 0.00 0.00 0.00 3.41
5408 6642 5.160607 TCTACGTTTTCACCAAGATCCAT 57.839 39.130 0.00 0.00 0.00 3.41
5409 6643 5.175859 TCTACGTTTTCACCAAGATCCATC 58.824 41.667 0.00 0.00 0.00 3.51
5410 6644 4.021102 ACGTTTTCACCAAGATCCATCT 57.979 40.909 0.00 0.00 39.22 2.90
5411 6645 5.160607 ACGTTTTCACCAAGATCCATCTA 57.839 39.130 0.00 0.00 35.76 1.98
5412 6646 5.745227 ACGTTTTCACCAAGATCCATCTAT 58.255 37.500 0.00 0.00 35.76 1.98
5413 6647 5.586243 ACGTTTTCACCAAGATCCATCTATG 59.414 40.000 0.00 0.00 35.76 2.23
5414 6648 5.817296 CGTTTTCACCAAGATCCATCTATGA 59.183 40.000 0.00 0.00 35.76 2.15
5415 6649 6.018425 CGTTTTCACCAAGATCCATCTATGAG 60.018 42.308 0.00 0.00 35.76 2.90
5416 6650 6.566079 TTTCACCAAGATCCATCTATGAGT 57.434 37.500 0.00 0.00 35.76 3.41
5417 6651 6.566079 TTCACCAAGATCCATCTATGAGTT 57.434 37.500 0.00 0.00 35.76 3.01
5418 6652 6.166984 TCACCAAGATCCATCTATGAGTTC 57.833 41.667 0.00 0.00 35.76 3.01
5419 6653 5.662657 TCACCAAGATCCATCTATGAGTTCA 59.337 40.000 0.00 0.00 35.76 3.18
5420 6654 6.328410 TCACCAAGATCCATCTATGAGTTCAT 59.672 38.462 0.00 0.00 35.76 2.57
5421 6655 6.649973 CACCAAGATCCATCTATGAGTTCATC 59.350 42.308 0.00 0.00 35.76 2.92
5422 6656 6.558014 ACCAAGATCCATCTATGAGTTCATCT 59.442 38.462 0.00 0.00 35.76 2.90
5423 6657 7.732140 ACCAAGATCCATCTATGAGTTCATCTA 59.268 37.037 0.00 0.00 35.76 1.98
5424 6658 8.252417 CCAAGATCCATCTATGAGTTCATCTAG 58.748 40.741 0.00 0.00 35.76 2.43
5425 6659 7.408756 AGATCCATCTATGAGTTCATCTAGC 57.591 40.000 0.00 0.00 37.76 3.42
5426 6660 6.952938 AGATCCATCTATGAGTTCATCTAGCA 59.047 38.462 0.00 0.00 37.76 3.49
5427 6661 6.983906 TCCATCTATGAGTTCATCTAGCAA 57.016 37.500 0.00 0.00 37.76 3.91
5428 6662 6.753180 TCCATCTATGAGTTCATCTAGCAAC 58.247 40.000 0.00 0.00 37.76 4.17
5429 6663 5.632764 CCATCTATGAGTTCATCTAGCAACG 59.367 44.000 0.00 0.00 37.76 4.10
5430 6664 6.442112 CATCTATGAGTTCATCTAGCAACGA 58.558 40.000 0.00 0.00 37.76 3.85
5431 6665 6.066054 TCTATGAGTTCATCTAGCAACGAG 57.934 41.667 0.00 0.00 37.76 4.18
5432 6666 4.727507 ATGAGTTCATCTAGCAACGAGT 57.272 40.909 0.00 0.00 28.78 4.18
5433 6667 3.838120 TGAGTTCATCTAGCAACGAGTG 58.162 45.455 0.00 0.00 0.00 3.51
5434 6668 3.506067 TGAGTTCATCTAGCAACGAGTGA 59.494 43.478 0.00 0.00 0.00 3.41
5435 6669 4.158579 TGAGTTCATCTAGCAACGAGTGAT 59.841 41.667 0.00 0.00 0.00 3.06
5436 6670 4.677584 AGTTCATCTAGCAACGAGTGATC 58.322 43.478 0.00 0.00 0.00 2.92
5437 6671 3.340337 TCATCTAGCAACGAGTGATCG 57.660 47.619 0.00 0.00 39.31 3.69
5438 6672 2.033424 TCATCTAGCAACGAGTGATCGG 59.967 50.000 2.46 0.00 37.45 4.18
5439 6673 1.746470 TCTAGCAACGAGTGATCGGA 58.254 50.000 2.46 0.00 37.45 4.55
5440 6674 2.298610 TCTAGCAACGAGTGATCGGAT 58.701 47.619 2.46 0.00 37.45 4.18
5441 6675 2.033424 TCTAGCAACGAGTGATCGGATG 59.967 50.000 0.00 2.53 37.45 3.51
5442 6676 0.807667 AGCAACGAGTGATCGGATGC 60.808 55.000 17.37 17.37 44.49 3.91
5443 6677 1.083806 GCAACGAGTGATCGGATGCA 61.084 55.000 19.08 0.00 43.99 3.96
5444 6678 1.575244 CAACGAGTGATCGGATGCAT 58.425 50.000 0.00 0.00 37.45 3.96
5445 6679 1.524355 CAACGAGTGATCGGATGCATC 59.476 52.381 18.81 18.81 37.45 3.91
5446 6680 1.035923 ACGAGTGATCGGATGCATCT 58.964 50.000 25.28 6.65 37.45 2.90
5447 6681 2.230660 ACGAGTGATCGGATGCATCTA 58.769 47.619 25.28 14.70 37.45 1.98
5448 6682 2.030717 ACGAGTGATCGGATGCATCTAC 60.031 50.000 25.28 15.76 37.45 2.59
5449 6683 2.030805 CGAGTGATCGGATGCATCTACA 60.031 50.000 25.28 16.38 0.00 2.74
5450 6684 3.366781 CGAGTGATCGGATGCATCTACAT 60.367 47.826 25.28 14.56 0.00 2.29
5451 6685 4.142600 CGAGTGATCGGATGCATCTACATA 60.143 45.833 25.28 7.87 0.00 2.29
5452 6686 5.065704 AGTGATCGGATGCATCTACATAC 57.934 43.478 25.28 17.89 0.00 2.39
5453 6687 4.081972 AGTGATCGGATGCATCTACATACC 60.082 45.833 25.28 7.43 0.00 2.73
5454 6688 4.081972 GTGATCGGATGCATCTACATACCT 60.082 45.833 25.28 3.18 0.00 3.08
5455 6689 4.528206 TGATCGGATGCATCTACATACCTT 59.472 41.667 25.28 0.00 0.00 3.50
5456 6690 4.955811 TCGGATGCATCTACATACCTTT 57.044 40.909 25.28 0.00 0.00 3.11
5457 6691 4.631131 TCGGATGCATCTACATACCTTTG 58.369 43.478 25.28 0.00 0.00 2.77
5458 6692 4.100963 TCGGATGCATCTACATACCTTTGT 59.899 41.667 25.28 0.00 0.00 2.83
5459 6693 5.303333 TCGGATGCATCTACATACCTTTGTA 59.697 40.000 25.28 0.00 0.00 2.41
5460 6694 5.635280 CGGATGCATCTACATACCTTTGTAG 59.365 44.000 25.28 5.47 46.85 2.74
5468 6702 3.966154 ACATACCTTTGTAGATCGCGAG 58.034 45.455 16.66 0.00 0.00 5.03
5469 6703 2.486951 TACCTTTGTAGATCGCGAGC 57.513 50.000 18.21 18.21 0.00 5.03
5470 6704 0.525668 ACCTTTGTAGATCGCGAGCG 60.526 55.000 19.77 11.64 41.35 5.03
5471 6705 1.209275 CCTTTGTAGATCGCGAGCGG 61.209 60.000 19.77 9.10 40.25 5.52
5472 6706 0.248498 CTTTGTAGATCGCGAGCGGA 60.248 55.000 19.77 8.43 40.25 5.54
5473 6707 0.171679 TTTGTAGATCGCGAGCGGAA 59.828 50.000 19.77 10.05 40.25 4.30
5474 6708 0.248498 TTGTAGATCGCGAGCGGAAG 60.248 55.000 19.77 0.00 40.25 3.46
5487 6721 3.345087 CGGAAGCGTTCAAAGAACG 57.655 52.632 23.41 23.41 45.56 3.95
5488 6722 0.110823 CGGAAGCGTTCAAAGAACGG 60.111 55.000 27.01 13.38 43.25 4.44
5489 6723 0.237498 GGAAGCGTTCAAAGAACGGG 59.763 55.000 27.01 7.26 43.25 5.28
5490 6724 0.237498 GAAGCGTTCAAAGAACGGGG 59.763 55.000 27.01 6.65 43.25 5.73
5491 6725 0.179040 AAGCGTTCAAAGAACGGGGA 60.179 50.000 27.01 0.00 43.25 4.81
5492 6726 0.036306 AGCGTTCAAAGAACGGGGAT 59.964 50.000 27.01 2.09 43.25 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.033185 GGTAAAATATACCTGTTGCAAGTTGG 58.967 38.462 0.00 5.00 34.82 3.77
1 2 7.826690 AGGTAAAATATACCTGTTGCAAGTTG 58.173 34.615 0.00 0.00 45.56 3.16
2 3 9.523168 TTAGGTAAAATATACCTGTTGCAAGTT 57.477 29.630 15.66 0.00 46.60 2.66
3 4 9.695155 ATTAGGTAAAATATACCTGTTGCAAGT 57.305 29.630 15.66 0.00 46.60 3.16
47 48 9.274206 TGCAATGCACGTTTATATTAGGTATTA 57.726 29.630 2.72 0.00 31.71 0.98
48 49 8.160521 TGCAATGCACGTTTATATTAGGTATT 57.839 30.769 2.72 0.00 31.71 1.89
49 50 7.737972 TGCAATGCACGTTTATATTAGGTAT 57.262 32.000 2.72 0.00 31.71 2.73
137 138 1.000955 TCTTCTCACCGCTTTCTGACC 59.999 52.381 0.00 0.00 0.00 4.02
172 173 1.089920 AACAATGACTGCGATGGCTC 58.910 50.000 0.15 0.00 40.82 4.70
212 213 0.615331 ATTGACTGACCACGATGGCT 59.385 50.000 4.23 0.00 42.67 4.75
233 234 4.078537 TGGCCATATGGGTATCGAATTTG 58.921 43.478 23.30 0.00 39.65 2.32
285 286 2.587522 CAGAGGTGAGGACGGATCATA 58.412 52.381 0.00 0.00 0.00 2.15
293 294 2.183046 GAGCGCAGAGGTGAGGAC 59.817 66.667 11.47 0.00 0.00 3.85
354 355 0.738412 ACGTTGGCTATTTCGACCGG 60.738 55.000 0.00 0.00 0.00 5.28
355 356 0.368907 CACGTTGGCTATTTCGACCG 59.631 55.000 0.00 0.00 0.00 4.79
356 357 0.096454 GCACGTTGGCTATTTCGACC 59.904 55.000 0.00 0.00 0.00 4.79
357 358 0.793861 TGCACGTTGGCTATTTCGAC 59.206 50.000 0.00 0.00 34.04 4.20
358 359 1.195900 GTTGCACGTTGGCTATTTCGA 59.804 47.619 0.00 0.00 34.04 3.71
359 360 1.602191 GTTGCACGTTGGCTATTTCG 58.398 50.000 0.00 0.00 34.04 3.46
360 361 1.727857 CGGTTGCACGTTGGCTATTTC 60.728 52.381 0.00 0.00 34.04 2.17
543 544 4.104086 AGGGAAAGGGGATTTTGATTTCC 58.896 43.478 6.48 6.48 45.29 3.13
544 545 5.762179 AAGGGAAAGGGGATTTTGATTTC 57.238 39.130 0.00 0.00 0.00 2.17
545 546 5.014123 GGAAAGGGAAAGGGGATTTTGATTT 59.986 40.000 0.00 0.00 0.00 2.17
546 547 4.536090 GGAAAGGGAAAGGGGATTTTGATT 59.464 41.667 0.00 0.00 0.00 2.57
574 575 4.193865 TCGACGTGTGTAGATGGATCTAA 58.806 43.478 0.00 0.00 40.77 2.10
617 618 6.480981 ACGACGAAGAAGAAAAAGGATTGTAA 59.519 34.615 0.00 0.00 0.00 2.41
625 633 6.750775 AGTAAGACGACGAAGAAGAAAAAG 57.249 37.500 0.00 0.00 0.00 2.27
647 655 6.975772 AGAGATTAGAGATCGTTTTTCCGAAG 59.024 38.462 0.00 0.00 40.73 3.79
656 664 8.380099 ACTGGTAGATAGAGATTAGAGATCGTT 58.620 37.037 0.00 0.00 0.00 3.85
659 667 9.601217 GAGACTGGTAGATAGAGATTAGAGATC 57.399 40.741 0.00 0.00 0.00 2.75
699 707 9.399797 TCTTGAGAGAAAAATATGTGTGCATAT 57.600 29.630 0.00 0.00 46.92 1.78
700 708 8.791327 TCTTGAGAGAAAAATATGTGTGCATA 57.209 30.769 0.00 0.00 41.31 3.14
704 712 9.932699 GATGATCTTGAGAGAAAAATATGTGTG 57.067 33.333 0.00 0.00 35.07 3.82
903 913 2.645510 CCTATTCGGCGCGCTTACG 61.646 63.158 32.29 25.51 44.07 3.18
924 934 1.135731 CCACGACGAGAGCTGTCTC 59.864 63.158 9.46 0.89 45.29 3.36
925 935 2.983930 GCCACGACGAGAGCTGTCT 61.984 63.158 9.46 0.00 34.17 3.41
926 936 2.505118 GCCACGACGAGAGCTGTC 60.505 66.667 0.00 0.00 0.00 3.51
927 937 4.406173 CGCCACGACGAGAGCTGT 62.406 66.667 0.00 0.00 34.06 4.40
997 1007 2.044806 GCGGACTGGCTATCCATGGT 62.045 60.000 12.58 1.59 42.51 3.55
1131 1141 3.626680 CTTCCGCAGCGACGAGGAA 62.627 63.158 18.75 9.81 41.83 3.36
1336 1350 4.870123 AGCATGCATGTAGGAACAAAAA 57.130 36.364 26.79 0.00 39.58 1.94
1361 1375 1.762957 ACCGAACCGAGGATCATGAAT 59.237 47.619 0.00 0.00 33.17 2.57
1362 1376 1.191535 ACCGAACCGAGGATCATGAA 58.808 50.000 0.00 0.00 33.17 2.57
1460 1476 3.449018 AGAGGCAGTGTTGGATAGTAGTG 59.551 47.826 0.00 0.00 0.00 2.74
1487 1503 6.212888 AGGTTCAATTGTGATTAAGCATCC 57.787 37.500 5.13 0.00 32.48 3.51
1506 1522 4.626081 AGGACAGCGCGCAAGGTT 62.626 61.111 35.10 9.38 38.28 3.50
1527 1543 3.431626 CGTGGCCAATTGAGGTATACTGA 60.432 47.826 7.24 0.00 0.00 3.41
1541 1557 0.951525 CCGTAACATGACGTGGCCAA 60.952 55.000 7.24 0.00 41.31 4.52
1542 1558 1.374885 CCGTAACATGACGTGGCCA 60.375 57.895 0.00 0.00 41.31 5.36
1552 1568 0.393808 GCCCCATGTGTCCGTAACAT 60.394 55.000 0.00 0.00 40.80 2.71
1554 1570 1.003112 TGCCCCATGTGTCCGTAAC 60.003 57.895 0.00 0.00 0.00 2.50
1646 1689 4.314740 TTGTTTGCCACTTTGTACATCC 57.685 40.909 0.00 0.00 0.00 3.51
1710 1753 2.887783 CACGGAGAGCATATGTAGAGGT 59.112 50.000 4.29 0.00 0.00 3.85
1720 1763 1.074775 TTTTGGCCACGGAGAGCAT 59.925 52.632 3.88 0.00 32.45 3.79
1728 1771 2.195123 GACCGATGGTTTTGGCCACG 62.195 60.000 3.88 3.23 41.94 4.94
1756 1799 5.831997 ACTTGATCAGTGCCTTGTTTTTAC 58.168 37.500 0.00 0.00 32.83 2.01
1808 1851 9.310716 CAATAGATGATCTCACATGCGTATAAT 57.689 33.333 0.00 0.00 0.00 1.28
1809 1852 8.522830 TCAATAGATGATCTCACATGCGTATAA 58.477 33.333 0.00 0.00 31.50 0.98
1844 1887 3.434641 ACGAGCAAGACACAATCTCATTG 59.565 43.478 0.00 0.00 45.59 2.82
1845 1888 3.668447 ACGAGCAAGACACAATCTCATT 58.332 40.909 0.00 0.00 36.27 2.57
1846 1889 3.325293 ACGAGCAAGACACAATCTCAT 57.675 42.857 0.00 0.00 36.27 2.90
1847 1890 2.820059 ACGAGCAAGACACAATCTCA 57.180 45.000 0.00 0.00 36.27 3.27
1848 1891 5.786401 ATTAACGAGCAAGACACAATCTC 57.214 39.130 0.00 0.00 36.27 2.75
1849 1892 6.874134 ACTAATTAACGAGCAAGACACAATCT 59.126 34.615 0.00 0.00 40.46 2.40
1877 1920 9.836076 CGATTAGACTAATATAAACGATCACCA 57.164 33.333 7.71 0.00 31.60 4.17
1878 1921 9.837525 ACGATTAGACTAATATAAACGATCACC 57.162 33.333 15.98 0.00 33.13 4.02
1925 2063 2.799412 GTGCCATTTTGACGCAAAATCA 59.201 40.909 20.33 15.69 46.82 2.57
1941 2079 5.023533 AGAGCGATTCTATTAAAGTGCCA 57.976 39.130 0.00 0.00 33.23 4.92
1943 2081 5.117287 CCGTAGAGCGATTCTATTAAAGTGC 59.883 44.000 0.00 0.00 44.77 4.40
1961 2099 2.707849 GGCGACTTGAGGCCGTAGA 61.708 63.158 0.00 0.00 39.93 2.59
2021 2159 1.476085 TGCCCGCAACCTTCAAATATG 59.524 47.619 0.00 0.00 0.00 1.78
2022 2160 1.476488 GTGCCCGCAACCTTCAAATAT 59.524 47.619 0.00 0.00 0.00 1.28
2038 2176 2.908073 CGTGCTCCAAACCAGTGCC 61.908 63.158 0.00 0.00 0.00 5.01
2042 2180 2.639286 GTGCGTGCTCCAAACCAG 59.361 61.111 0.00 0.00 0.00 4.00
2058 2196 1.807755 CGTGATCGATTGGCAGATGGT 60.808 52.381 0.00 0.00 39.71 3.55
2060 2198 0.863799 CCGTGATCGATTGGCAGATG 59.136 55.000 0.00 0.00 39.71 2.90
2064 2202 1.143838 CTCCCGTGATCGATTGGCA 59.856 57.895 0.00 0.00 39.71 4.92
2065 2203 0.598680 CTCTCCCGTGATCGATTGGC 60.599 60.000 0.00 0.00 39.71 4.52
2076 2214 1.619332 GAGGTGAAACTTCTCTCCCGT 59.381 52.381 0.00 0.00 40.22 5.28
2083 2221 2.297597 CGAGGAGTGAGGTGAAACTTCT 59.702 50.000 0.00 0.00 44.28 2.85
2114 2252 0.972883 GTAAAACTGCCATGGCCCAA 59.027 50.000 33.44 14.81 41.09 4.12
2121 2259 4.022676 CCTACGTTTTGGTAAAACTGCCAT 60.023 41.667 13.35 0.38 46.54 4.40
2176 2314 1.067776 CACTCCCTCCGTGAAGTACAC 60.068 57.143 0.00 0.00 45.11 2.90
2184 2322 2.187946 GATGGCACTCCCTCCGTG 59.812 66.667 0.00 0.00 35.53 4.94
2191 2329 1.207329 AGGTTTACGAGATGGCACTCC 59.793 52.381 10.22 0.00 33.83 3.85
2192 2330 2.673368 CAAGGTTTACGAGATGGCACTC 59.327 50.000 0.00 0.00 0.00 3.51
2217 2355 1.535028 TGCACATTTGGCTGTTAGTCG 59.465 47.619 0.00 0.00 0.00 4.18
2314 2452 1.867233 CAACTCGTGAACACCCAAGAG 59.133 52.381 0.00 0.00 44.49 2.85
2315 2453 1.474320 CCAACTCGTGAACACCCAAGA 60.474 52.381 0.00 0.00 0.00 3.02
2345 2483 1.113517 GCTATACTCCACCGGGCTGA 61.114 60.000 6.32 0.00 0.00 4.26
2419 2557 7.671302 TCCAGCCATAGTCTTCTTCAATATAC 58.329 38.462 0.00 0.00 0.00 1.47
2428 2566 2.998316 GCTTCCAGCCATAGTCTTCT 57.002 50.000 0.00 0.00 34.48 2.85
2441 2579 2.575532 CACTCTTGACTTTGGCTTCCA 58.424 47.619 0.00 0.00 0.00 3.53
2466 2604 4.622740 GGAGCATTTCACAAATTAGTGTGC 59.377 41.667 5.54 0.00 46.97 4.57
2468 2606 4.082787 CGGGAGCATTTCACAAATTAGTGT 60.083 41.667 0.00 0.00 40.37 3.55
2469 2607 4.414852 CGGGAGCATTTCACAAATTAGTG 58.585 43.478 0.00 0.00 40.85 2.74
2497 3618 6.058833 TGTGTTAGCACCAAAATTGAGACTA 58.941 36.000 7.29 0.00 44.65 2.59
2504 3625 9.606631 TTTAGATTTTGTGTTAGCACCAAAATT 57.393 25.926 21.52 16.68 41.48 1.82
2519 3640 9.762933 ACAATATGCACAAGTTTTAGATTTTGT 57.237 25.926 0.00 0.00 34.31 2.83
2521 3642 9.128107 CGACAATATGCACAAGTTTTAGATTTT 57.872 29.630 0.00 0.00 0.00 1.82
2522 3643 8.296713 ACGACAATATGCACAAGTTTTAGATTT 58.703 29.630 0.00 0.00 0.00 2.17
2523 3644 7.816640 ACGACAATATGCACAAGTTTTAGATT 58.183 30.769 0.00 0.00 0.00 2.40
2524 3645 7.377766 ACGACAATATGCACAAGTTTTAGAT 57.622 32.000 0.00 0.00 0.00 1.98
2525 3646 6.795098 ACGACAATATGCACAAGTTTTAGA 57.205 33.333 0.00 0.00 0.00 2.10
2530 3651 6.183360 GCTACTTACGACAATATGCACAAGTT 60.183 38.462 0.00 0.00 0.00 2.66
2540 3661 4.081862 ACTTGCTGGCTACTTACGACAATA 60.082 41.667 0.00 0.00 0.00 1.90
2548 3669 3.762407 TCAACACTTGCTGGCTACTTA 57.238 42.857 0.00 0.00 0.00 2.24
2580 3701 8.415950 TCCACTTTGCCAGAAATAGAAATAAA 57.584 30.769 0.00 0.00 0.00 1.40
2601 3722 7.189512 CGATTCAGATCCACTTTAAATTCCAC 58.810 38.462 0.00 0.00 0.00 4.02
2681 3802 0.972883 ACTCTGTGAGGAAGCTGACC 59.027 55.000 2.38 2.38 33.35 4.02
2759 3880 3.144506 AGCATTTCCAGAACTGACACAG 58.855 45.455 3.19 0.00 37.52 3.66
2866 3987 3.832615 ATACGTAGTTTGGGGTGGATC 57.167 47.619 0.08 0.00 37.78 3.36
2897 4018 4.534168 GCGAGACAGAAATATACTGCGTA 58.466 43.478 8.98 0.00 38.74 4.42
2898 4019 3.372954 GCGAGACAGAAATATACTGCGT 58.627 45.455 8.98 0.00 38.74 5.24
2899 4020 2.726760 GGCGAGACAGAAATATACTGCG 59.273 50.000 8.98 6.78 38.74 5.18
2901 4022 3.309388 CCGGCGAGACAGAAATATACTG 58.691 50.000 9.30 7.88 40.68 2.74
2903 4024 2.059541 GCCGGCGAGACAGAAATATAC 58.940 52.381 12.58 0.00 0.00 1.47
2905 4026 0.249911 GGCCGGCGAGACAGAAATAT 60.250 55.000 22.54 0.00 0.00 1.28
2906 4027 1.143183 GGCCGGCGAGACAGAAATA 59.857 57.895 22.54 0.00 0.00 1.40
2907 4028 2.125106 GGCCGGCGAGACAGAAAT 60.125 61.111 22.54 0.00 0.00 2.17
2908 4029 4.735132 CGGCCGGCGAGACAGAAA 62.735 66.667 22.54 0.00 0.00 2.52
2933 4054 8.922676 ACAAGTCGAGTAATTAACAACACATAG 58.077 33.333 0.00 0.00 0.00 2.23
2954 4075 0.175531 GCCAACTGCAAACCACAAGT 59.824 50.000 0.00 0.00 40.77 3.16
3244 4365 7.010645 GTGAAGCTAGTCAGTCTAAAATTAGGC 59.989 40.741 0.00 0.00 35.65 3.93
3258 4379 0.601558 GTCGTGGGTGAAGCTAGTCA 59.398 55.000 0.00 0.00 0.00 3.41
3426 4547 0.112995 TGATGAAACTGCAGGCCCTT 59.887 50.000 19.93 5.49 0.00 3.95
3519 4640 2.510551 ATCATCATCGCCGCCCTCA 61.511 57.895 0.00 0.00 0.00 3.86
3528 4649 2.686235 GCCTCTTCCTCATCATCATCG 58.314 52.381 0.00 0.00 0.00 3.84
3531 4652 0.755079 CCGCCTCTTCCTCATCATCA 59.245 55.000 0.00 0.00 0.00 3.07
3534 4655 1.330655 GGACCGCCTCTTCCTCATCA 61.331 60.000 0.00 0.00 0.00 3.07
3537 4658 2.445614 AGGACCGCCTCTTCCTCA 59.554 61.111 0.00 0.00 42.19 3.86
3600 4721 3.449227 TCGGAGAGCACGGCGATT 61.449 61.111 16.62 0.00 0.00 3.34
4032 5153 5.163963 CGACGAATGTTTGTCTGAATGATGA 60.164 40.000 10.51 0.00 39.04 2.92
4033 5154 5.017612 CGACGAATGTTTGTCTGAATGATG 58.982 41.667 10.51 0.00 39.04 3.07
4034 5155 4.093408 CCGACGAATGTTTGTCTGAATGAT 59.907 41.667 10.51 0.00 39.04 2.45
4035 5156 3.431912 CCGACGAATGTTTGTCTGAATGA 59.568 43.478 10.51 0.00 39.04 2.57
4036 5157 3.186409 ACCGACGAATGTTTGTCTGAATG 59.814 43.478 10.37 0.00 39.04 2.67
4037 5158 3.186409 CACCGACGAATGTTTGTCTGAAT 59.814 43.478 10.37 0.00 39.04 2.57
4038 5159 2.542178 CACCGACGAATGTTTGTCTGAA 59.458 45.455 10.37 0.00 39.04 3.02
4039 5160 2.131972 CACCGACGAATGTTTGTCTGA 58.868 47.619 10.37 0.00 39.04 3.27
4040 5161 2.131972 TCACCGACGAATGTTTGTCTG 58.868 47.619 10.51 7.14 39.04 3.51
4041 5162 2.404215 CTCACCGACGAATGTTTGTCT 58.596 47.619 10.51 0.00 39.04 3.41
4042 5163 1.459592 CCTCACCGACGAATGTTTGTC 59.540 52.381 0.00 3.50 38.06 3.18
4050 5171 2.554370 AAAATTCCCTCACCGACGAA 57.446 45.000 0.00 0.00 0.00 3.85
4074 5195 9.503399 AATCGACTTCCTTTCTTTAGTTTATGT 57.497 29.630 0.00 0.00 0.00 2.29
4086 5208 6.149474 TCTCAATTGGAAATCGACTTCCTTTC 59.851 38.462 24.71 12.70 44.57 2.62
4185 5307 6.943718 TCACTGGATTAATTAGGACCGTTTTT 59.056 34.615 0.00 0.00 0.00 1.94
4188 5310 5.687166 TCACTGGATTAATTAGGACCGTT 57.313 39.130 0.00 0.00 0.00 4.44
4189 5311 5.888982 ATCACTGGATTAATTAGGACCGT 57.111 39.130 0.00 0.00 0.00 4.83
4190 5312 7.282224 TCAAAATCACTGGATTAATTAGGACCG 59.718 37.037 0.00 0.00 42.87 4.79
4219 5341 2.010145 ATGTGACGTTCCATCCTTCG 57.990 50.000 0.00 0.00 0.00 3.79
4286 5408 4.034742 GGTTGTCTCGTAACAAAGAAGCAA 59.965 41.667 6.88 0.00 40.62 3.91
4298 5420 1.069022 GTACGTGCTGGTTGTCTCGTA 60.069 52.381 0.00 0.00 33.70 3.43
4351 5473 4.444056 ACTGCACAACAATCGCAAATAAAC 59.556 37.500 0.00 0.00 34.75 2.01
4362 5484 2.936202 AGAAGTGGACTGCACAACAAT 58.064 42.857 3.27 0.00 0.00 2.71
4366 5488 2.418368 ACAAGAAGTGGACTGCACAA 57.582 45.000 3.27 0.00 0.00 3.33
4425 5547 3.773630 CGTTGCCGTTCGCGTGAT 61.774 61.111 5.77 0.00 42.08 3.06
4669 5791 7.909121 CCTAGACAACATAGTGTAGTCTTAACG 59.091 40.741 0.00 0.00 39.92 3.18
4675 5797 7.228906 TGCTATCCTAGACAACATAGTGTAGTC 59.771 40.741 0.00 0.00 34.53 2.59
4782 6014 2.646719 CACGCATGCCAGTTTGCT 59.353 55.556 13.15 0.00 36.71 3.91
4815 6047 0.960861 GGTGGCTTCAGGCTAACACC 60.961 60.000 1.64 8.72 41.18 4.16
4997 6231 7.970614 ACAAGAAGCAATAAAAATAGCTAGCAC 59.029 33.333 18.83 0.00 36.07 4.40
5036 6270 1.195900 GGCTTATTGCACGACGAACAA 59.804 47.619 0.00 5.78 45.15 2.83
5043 6277 1.480545 TGAGCTAGGCTTATTGCACGA 59.519 47.619 0.00 0.00 45.15 4.35
5094 6328 3.719924 CGTAACTGTAACAACCCACTGA 58.280 45.455 0.00 0.00 0.00 3.41
5135 6369 0.098200 CGCCACTGTCTGCATCATTG 59.902 55.000 0.00 0.00 0.00 2.82
5152 6386 3.984193 ATCAGTTGGCTGGCTCCGC 62.984 63.158 2.00 0.00 42.78 5.54
5153 6387 2.110967 CATCAGTTGGCTGGCTCCG 61.111 63.158 2.00 0.00 42.78 4.63
5154 6388 0.610232 AACATCAGTTGGCTGGCTCC 60.610 55.000 2.00 0.00 42.78 4.70
5155 6389 2.113860 TAACATCAGTTGGCTGGCTC 57.886 50.000 2.00 0.00 42.78 4.70
5156 6390 2.584835 TTAACATCAGTTGGCTGGCT 57.415 45.000 2.00 0.00 42.78 4.75
5157 6391 3.874392 ATTTAACATCAGTTGGCTGGC 57.126 42.857 0.00 0.00 42.78 4.85
5158 6392 6.866480 ACATTATTTAACATCAGTTGGCTGG 58.134 36.000 0.00 0.00 42.78 4.85
5159 6393 6.688385 CGACATTATTTAACATCAGTTGGCTG 59.312 38.462 0.00 0.00 43.87 4.85
5160 6394 6.183360 CCGACATTATTTAACATCAGTTGGCT 60.183 38.462 0.00 0.00 38.69 4.75
5161 6395 5.971202 CCGACATTATTTAACATCAGTTGGC 59.029 40.000 0.00 0.00 38.69 4.52
5162 6396 6.459573 CCCCGACATTATTTAACATCAGTTGG 60.460 42.308 0.00 0.00 38.69 3.77
5163 6397 6.317642 TCCCCGACATTATTTAACATCAGTTG 59.682 38.462 0.00 0.00 38.69 3.16
5164 6398 6.419791 TCCCCGACATTATTTAACATCAGTT 58.580 36.000 0.00 0.00 41.74 3.16
5165 6399 5.996644 TCCCCGACATTATTTAACATCAGT 58.003 37.500 0.00 0.00 0.00 3.41
5166 6400 5.470098 CCTCCCCGACATTATTTAACATCAG 59.530 44.000 0.00 0.00 0.00 2.90
5167 6401 5.373222 CCTCCCCGACATTATTTAACATCA 58.627 41.667 0.00 0.00 0.00 3.07
5168 6402 4.760204 CCCTCCCCGACATTATTTAACATC 59.240 45.833 0.00 0.00 0.00 3.06
5169 6403 4.725490 CCCTCCCCGACATTATTTAACAT 58.275 43.478 0.00 0.00 0.00 2.71
5170 6404 3.686120 GCCCTCCCCGACATTATTTAACA 60.686 47.826 0.00 0.00 0.00 2.41
5171 6405 2.882761 GCCCTCCCCGACATTATTTAAC 59.117 50.000 0.00 0.00 0.00 2.01
5172 6406 2.158579 GGCCCTCCCCGACATTATTTAA 60.159 50.000 0.00 0.00 0.00 1.52
5173 6407 1.422402 GGCCCTCCCCGACATTATTTA 59.578 52.381 0.00 0.00 0.00 1.40
5174 6408 0.185175 GGCCCTCCCCGACATTATTT 59.815 55.000 0.00 0.00 0.00 1.40
5175 6409 0.991355 TGGCCCTCCCCGACATTATT 60.991 55.000 0.00 0.00 0.00 1.40
5176 6410 0.991355 TTGGCCCTCCCCGACATTAT 60.991 55.000 0.00 0.00 0.00 1.28
5177 6411 1.208844 TTTGGCCCTCCCCGACATTA 61.209 55.000 0.00 0.00 0.00 1.90
5178 6412 2.087857 TTTTGGCCCTCCCCGACATT 62.088 55.000 0.00 0.00 0.00 2.71
5179 6413 2.543797 TTTTGGCCCTCCCCGACAT 61.544 57.895 0.00 0.00 0.00 3.06
5180 6414 3.179339 TTTTGGCCCTCCCCGACA 61.179 61.111 0.00 0.00 0.00 4.35
5181 6415 2.675423 GTTTTGGCCCTCCCCGAC 60.675 66.667 0.00 0.00 0.00 4.79
5182 6416 3.974293 GGTTTTGGCCCTCCCCGA 61.974 66.667 0.00 0.00 0.00 5.14
5183 6417 4.293671 TGGTTTTGGCCCTCCCCG 62.294 66.667 0.00 0.00 0.00 5.73
5184 6418 2.283894 CTGGTTTTGGCCCTCCCC 60.284 66.667 0.00 0.00 0.00 4.81
5185 6419 2.997315 GCTGGTTTTGGCCCTCCC 60.997 66.667 0.00 0.00 0.00 4.30
5186 6420 1.406860 TTTGCTGGTTTTGGCCCTCC 61.407 55.000 0.00 0.00 0.00 4.30
5187 6421 0.467804 TTTTGCTGGTTTTGGCCCTC 59.532 50.000 0.00 0.00 0.00 4.30
5188 6422 1.072173 GATTTTGCTGGTTTTGGCCCT 59.928 47.619 0.00 0.00 0.00 5.19
5189 6423 1.202746 TGATTTTGCTGGTTTTGGCCC 60.203 47.619 0.00 0.00 0.00 5.80
5190 6424 2.252976 TGATTTTGCTGGTTTTGGCC 57.747 45.000 0.00 0.00 0.00 5.36
5191 6425 3.401182 TGATGATTTTGCTGGTTTTGGC 58.599 40.909 0.00 0.00 0.00 4.52
5192 6426 7.670009 TTTATGATGATTTTGCTGGTTTTGG 57.330 32.000 0.00 0.00 0.00 3.28
5194 6428 9.941325 TGTATTTATGATGATTTTGCTGGTTTT 57.059 25.926 0.00 0.00 0.00 2.43
5195 6429 9.369904 GTGTATTTATGATGATTTTGCTGGTTT 57.630 29.630 0.00 0.00 0.00 3.27
5196 6430 8.530311 TGTGTATTTATGATGATTTTGCTGGTT 58.470 29.630 0.00 0.00 0.00 3.67
5197 6431 8.065473 TGTGTATTTATGATGATTTTGCTGGT 57.935 30.769 0.00 0.00 0.00 4.00
5198 6432 8.929827 TTGTGTATTTATGATGATTTTGCTGG 57.070 30.769 0.00 0.00 0.00 4.85
5208 6442 9.481800 CGCTGCTAATATTGTGTATTTATGATG 57.518 33.333 0.00 0.00 0.00 3.07
5209 6443 8.668353 CCGCTGCTAATATTGTGTATTTATGAT 58.332 33.333 0.00 0.00 0.00 2.45
5210 6444 7.875554 TCCGCTGCTAATATTGTGTATTTATGA 59.124 33.333 0.00 0.00 0.00 2.15
5211 6445 8.028540 TCCGCTGCTAATATTGTGTATTTATG 57.971 34.615 0.00 0.00 0.00 1.90
5212 6446 8.792830 ATCCGCTGCTAATATTGTGTATTTAT 57.207 30.769 0.00 0.00 0.00 1.40
5213 6447 9.713713 TTATCCGCTGCTAATATTGTGTATTTA 57.286 29.630 0.00 0.00 0.00 1.40
5214 6448 8.615878 TTATCCGCTGCTAATATTGTGTATTT 57.384 30.769 0.00 0.00 0.00 1.40
5215 6449 8.792830 ATTATCCGCTGCTAATATTGTGTATT 57.207 30.769 0.00 0.00 0.00 1.89
5216 6450 7.495934 GGATTATCCGCTGCTAATATTGTGTAT 59.504 37.037 0.00 0.00 0.00 2.29
5217 6451 6.816640 GGATTATCCGCTGCTAATATTGTGTA 59.183 38.462 0.00 0.00 0.00 2.90
5218 6452 5.643777 GGATTATCCGCTGCTAATATTGTGT 59.356 40.000 0.00 0.00 0.00 3.72
5219 6453 5.065218 GGGATTATCCGCTGCTAATATTGTG 59.935 44.000 5.03 0.00 37.43 3.33
5220 6454 5.045578 AGGGATTATCCGCTGCTAATATTGT 60.046 40.000 5.03 0.00 37.43 2.71
5221 6455 5.431765 AGGGATTATCCGCTGCTAATATTG 58.568 41.667 5.03 0.00 37.43 1.90
5222 6456 5.675538 GAGGGATTATCCGCTGCTAATATT 58.324 41.667 5.03 0.00 37.43 1.28
5223 6457 4.202161 CGAGGGATTATCCGCTGCTAATAT 60.202 45.833 5.03 0.00 37.43 1.28
5224 6458 3.130516 CGAGGGATTATCCGCTGCTAATA 59.869 47.826 5.03 0.00 37.43 0.98
5225 6459 2.093973 CGAGGGATTATCCGCTGCTAAT 60.094 50.000 5.03 0.00 37.43 1.73
5226 6460 1.272490 CGAGGGATTATCCGCTGCTAA 59.728 52.381 5.03 0.00 37.43 3.09
5227 6461 0.888619 CGAGGGATTATCCGCTGCTA 59.111 55.000 5.03 0.00 37.43 3.49
5228 6462 1.115930 ACGAGGGATTATCCGCTGCT 61.116 55.000 5.03 0.00 37.43 4.24
5229 6463 0.601558 TACGAGGGATTATCCGCTGC 59.398 55.000 5.03 0.00 37.43 5.25
5230 6464 3.695060 ACTATACGAGGGATTATCCGCTG 59.305 47.826 5.03 0.00 37.43 5.18
5231 6465 3.695060 CACTATACGAGGGATTATCCGCT 59.305 47.826 5.03 3.67 37.43 5.52
5232 6466 3.181489 CCACTATACGAGGGATTATCCGC 60.181 52.174 5.03 0.00 37.43 5.54
5233 6467 3.181489 GCCACTATACGAGGGATTATCCG 60.181 52.174 5.03 0.00 37.43 4.18
5234 6468 3.767673 TGCCACTATACGAGGGATTATCC 59.232 47.826 1.91 1.91 35.23 2.59
5235 6469 5.401531 TTGCCACTATACGAGGGATTATC 57.598 43.478 0.00 0.00 0.00 1.75
5236 6470 5.818678 TTTGCCACTATACGAGGGATTAT 57.181 39.130 0.00 0.00 0.00 1.28
5237 6471 5.617528 TTTTGCCACTATACGAGGGATTA 57.382 39.130 0.00 0.00 0.00 1.75
5238 6472 4.497291 TTTTGCCACTATACGAGGGATT 57.503 40.909 0.00 0.00 0.00 3.01
5239 6473 4.348168 AGATTTTGCCACTATACGAGGGAT 59.652 41.667 0.00 0.00 0.00 3.85
5240 6474 3.709653 AGATTTTGCCACTATACGAGGGA 59.290 43.478 0.00 0.00 0.00 4.20
5241 6475 3.809832 CAGATTTTGCCACTATACGAGGG 59.190 47.826 0.00 0.00 0.00 4.30
5255 6489 3.581755 CCAGGTCAACATGCAGATTTTG 58.418 45.455 0.00 0.00 0.00 2.44
5256 6490 2.564062 CCCAGGTCAACATGCAGATTTT 59.436 45.455 0.00 0.00 0.00 1.82
5257 6491 2.173519 CCCAGGTCAACATGCAGATTT 58.826 47.619 0.00 0.00 0.00 2.17
5258 6492 1.843368 CCCAGGTCAACATGCAGATT 58.157 50.000 0.00 0.00 0.00 2.40
5259 6493 0.682209 GCCCAGGTCAACATGCAGAT 60.682 55.000 0.00 0.00 0.00 2.90
5260 6494 1.303561 GCCCAGGTCAACATGCAGA 60.304 57.895 0.00 0.00 0.00 4.26
5261 6495 2.345760 GGCCCAGGTCAACATGCAG 61.346 63.158 0.00 0.00 0.00 4.41
5262 6496 2.283101 GGCCCAGGTCAACATGCA 60.283 61.111 0.00 0.00 0.00 3.96
5263 6497 3.443045 CGGCCCAGGTCAACATGC 61.443 66.667 0.00 0.00 0.00 4.06
5264 6498 2.751436 CCGGCCCAGGTCAACATG 60.751 66.667 0.00 0.00 0.00 3.21
5265 6499 4.047125 CCCGGCCCAGGTCAACAT 62.047 66.667 0.00 0.00 0.00 2.71
5283 6517 3.801997 CAGGGGTGCTAGCAGGGG 61.802 72.222 20.03 2.41 0.00 4.79
5284 6518 4.496336 GCAGGGGTGCTAGCAGGG 62.496 72.222 20.03 7.14 0.00 4.45
5285 6519 4.496336 GGCAGGGGTGCTAGCAGG 62.496 72.222 20.03 6.78 34.73 4.85
5286 6520 3.397613 GAGGCAGGGGTGCTAGCAG 62.398 68.421 20.03 7.15 34.73 4.24
5287 6521 2.529930 TAGAGGCAGGGGTGCTAGCA 62.530 60.000 14.93 14.93 34.73 3.49
5288 6522 1.762460 TAGAGGCAGGGGTGCTAGC 60.762 63.158 8.10 8.10 34.73 3.42
5289 6523 1.403687 GGTAGAGGCAGGGGTGCTAG 61.404 65.000 0.00 0.00 34.73 3.42
5290 6524 1.382695 GGTAGAGGCAGGGGTGCTA 60.383 63.158 0.00 0.00 34.73 3.49
5291 6525 2.689034 GGTAGAGGCAGGGGTGCT 60.689 66.667 0.00 0.00 34.73 4.40
5292 6526 3.009115 TGGTAGAGGCAGGGGTGC 61.009 66.667 0.00 0.00 0.00 5.01
5293 6527 1.613630 AGTGGTAGAGGCAGGGGTG 60.614 63.158 0.00 0.00 0.00 4.61
5294 6528 1.613630 CAGTGGTAGAGGCAGGGGT 60.614 63.158 0.00 0.00 0.00 4.95
5295 6529 3.036429 GCAGTGGTAGAGGCAGGGG 62.036 68.421 0.00 0.00 0.00 4.79
5296 6530 2.586792 GCAGTGGTAGAGGCAGGG 59.413 66.667 0.00 0.00 0.00 4.45
5297 6531 2.185350 CGCAGTGGTAGAGGCAGG 59.815 66.667 0.00 0.00 0.00 4.85
5298 6532 2.510238 GCGCAGTGGTAGAGGCAG 60.510 66.667 0.30 0.00 0.00 4.85
5299 6533 3.310307 TGCGCAGTGGTAGAGGCA 61.310 61.111 5.66 0.00 0.00 4.75
5300 6534 2.815647 GTGCGCAGTGGTAGAGGC 60.816 66.667 12.22 0.00 0.00 4.70
5301 6535 1.738099 GTGTGCGCAGTGGTAGAGG 60.738 63.158 12.22 0.00 0.00 3.69
5302 6536 2.088763 CGTGTGCGCAGTGGTAGAG 61.089 63.158 12.22 0.00 0.00 2.43
5303 6537 2.049526 CGTGTGCGCAGTGGTAGA 60.050 61.111 12.22 0.00 0.00 2.59
5304 6538 1.218875 TTTCGTGTGCGCAGTGGTAG 61.219 55.000 12.22 0.00 38.14 3.18
5305 6539 0.810426 TTTTCGTGTGCGCAGTGGTA 60.810 50.000 12.22 0.00 38.14 3.25
5306 6540 2.047151 CTTTTCGTGTGCGCAGTGGT 62.047 55.000 12.22 0.00 38.14 4.16
5307 6541 1.369209 CTTTTCGTGTGCGCAGTGG 60.369 57.895 12.22 2.04 38.14 4.00
5308 6542 0.383491 CTCTTTTCGTGTGCGCAGTG 60.383 55.000 12.22 3.18 38.14 3.66
5309 6543 0.529773 TCTCTTTTCGTGTGCGCAGT 60.530 50.000 12.22 0.00 38.14 4.40
5310 6544 0.792640 ATCTCTTTTCGTGTGCGCAG 59.207 50.000 12.22 0.00 38.14 5.18
5311 6545 2.073117 TATCTCTTTTCGTGTGCGCA 57.927 45.000 5.66 5.66 38.14 6.09
5312 6546 3.449322 TTTATCTCTTTTCGTGTGCGC 57.551 42.857 0.00 0.00 38.14 6.09
5313 6547 5.118664 TCTCTTTTATCTCTTTTCGTGTGCG 59.881 40.000 0.00 0.00 39.92 5.34
5314 6548 6.073765 TGTCTCTTTTATCTCTTTTCGTGTGC 60.074 38.462 0.00 0.00 0.00 4.57
5315 6549 7.284351 GTGTCTCTTTTATCTCTTTTCGTGTG 58.716 38.462 0.00 0.00 0.00 3.82
5316 6550 6.424207 GGTGTCTCTTTTATCTCTTTTCGTGT 59.576 38.462 0.00 0.00 0.00 4.49
5317 6551 6.400091 CGGTGTCTCTTTTATCTCTTTTCGTG 60.400 42.308 0.00 0.00 0.00 4.35
5318 6552 5.634020 CGGTGTCTCTTTTATCTCTTTTCGT 59.366 40.000 0.00 0.00 0.00 3.85
5319 6553 5.862323 TCGGTGTCTCTTTTATCTCTTTTCG 59.138 40.000 0.00 0.00 0.00 3.46
5320 6554 7.148557 CCTTCGGTGTCTCTTTTATCTCTTTTC 60.149 40.741 0.00 0.00 0.00 2.29
5321 6555 6.651225 CCTTCGGTGTCTCTTTTATCTCTTTT 59.349 38.462 0.00 0.00 0.00 2.27
5322 6556 6.014499 TCCTTCGGTGTCTCTTTTATCTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
5323 6557 5.480772 TCCTTCGGTGTCTCTTTTATCTCTT 59.519 40.000 0.00 0.00 0.00 2.85
5324 6558 5.017490 TCCTTCGGTGTCTCTTTTATCTCT 58.983 41.667 0.00 0.00 0.00 3.10
5325 6559 5.103687 GTCCTTCGGTGTCTCTTTTATCTC 58.896 45.833 0.00 0.00 0.00 2.75
5326 6560 4.527038 TGTCCTTCGGTGTCTCTTTTATCT 59.473 41.667 0.00 0.00 0.00 1.98
5327 6561 4.817517 TGTCCTTCGGTGTCTCTTTTATC 58.182 43.478 0.00 0.00 0.00 1.75
5328 6562 4.884668 TGTCCTTCGGTGTCTCTTTTAT 57.115 40.909 0.00 0.00 0.00 1.40
5329 6563 4.884668 ATGTCCTTCGGTGTCTCTTTTA 57.115 40.909 0.00 0.00 0.00 1.52
5330 6564 3.771577 ATGTCCTTCGGTGTCTCTTTT 57.228 42.857 0.00 0.00 0.00 2.27
5331 6565 3.833070 ACTATGTCCTTCGGTGTCTCTTT 59.167 43.478 0.00 0.00 0.00 2.52
5332 6566 3.193691 CACTATGTCCTTCGGTGTCTCTT 59.806 47.826 0.00 0.00 0.00 2.85
5333 6567 2.755655 CACTATGTCCTTCGGTGTCTCT 59.244 50.000 0.00 0.00 0.00 3.10
5334 6568 2.492484 ACACTATGTCCTTCGGTGTCTC 59.508 50.000 0.00 0.00 36.57 3.36
5335 6569 2.526432 ACACTATGTCCTTCGGTGTCT 58.474 47.619 0.00 0.00 36.57 3.41
5336 6570 2.993899 CAACACTATGTCCTTCGGTGTC 59.006 50.000 0.00 0.00 39.72 3.67
5337 6571 2.289444 CCAACACTATGTCCTTCGGTGT 60.289 50.000 0.00 0.00 41.95 4.16
5338 6572 2.346803 CCAACACTATGTCCTTCGGTG 58.653 52.381 0.00 0.00 0.00 4.94
5339 6573 1.278127 CCCAACACTATGTCCTTCGGT 59.722 52.381 0.00 0.00 0.00 4.69
5340 6574 1.406887 CCCCAACACTATGTCCTTCGG 60.407 57.143 0.00 0.00 0.00 4.30
5341 6575 1.553248 TCCCCAACACTATGTCCTTCG 59.447 52.381 0.00 0.00 0.00 3.79
5342 6576 3.713826 TTCCCCAACACTATGTCCTTC 57.286 47.619 0.00 0.00 0.00 3.46
5343 6577 3.333680 ACATTCCCCAACACTATGTCCTT 59.666 43.478 0.00 0.00 0.00 3.36
5344 6578 2.919602 ACATTCCCCAACACTATGTCCT 59.080 45.455 0.00 0.00 0.00 3.85
5345 6579 3.366052 ACATTCCCCAACACTATGTCC 57.634 47.619 0.00 0.00 0.00 4.02
5346 6580 3.119495 GCAACATTCCCCAACACTATGTC 60.119 47.826 0.00 0.00 0.00 3.06
5347 6581 2.825532 GCAACATTCCCCAACACTATGT 59.174 45.455 0.00 0.00 0.00 2.29
5348 6582 2.824936 TGCAACATTCCCCAACACTATG 59.175 45.455 0.00 0.00 0.00 2.23
5349 6583 3.091545 CTGCAACATTCCCCAACACTAT 58.908 45.455 0.00 0.00 0.00 2.12
5350 6584 2.107378 TCTGCAACATTCCCCAACACTA 59.893 45.455 0.00 0.00 0.00 2.74
5351 6585 1.133513 TCTGCAACATTCCCCAACACT 60.134 47.619 0.00 0.00 0.00 3.55
5352 6586 1.327303 TCTGCAACATTCCCCAACAC 58.673 50.000 0.00 0.00 0.00 3.32
5353 6587 2.079170 TTCTGCAACATTCCCCAACA 57.921 45.000 0.00 0.00 0.00 3.33
5354 6588 3.130633 GTTTTCTGCAACATTCCCCAAC 58.869 45.455 0.00 0.00 0.00 3.77
5355 6589 2.768527 TGTTTTCTGCAACATTCCCCAA 59.231 40.909 0.00 0.00 31.48 4.12
5356 6590 2.392662 TGTTTTCTGCAACATTCCCCA 58.607 42.857 0.00 0.00 31.48 4.96
5357 6591 3.467374 TTGTTTTCTGCAACATTCCCC 57.533 42.857 0.00 0.00 36.54 4.81
5358 6592 6.375945 AAATTTGTTTTCTGCAACATTCCC 57.624 33.333 0.00 0.00 36.54 3.97
5359 6593 7.249858 ACAAAATTTGTTTTCTGCAACATTCC 58.750 30.769 5.41 0.00 42.22 3.01
5375 6609 7.954447 TGGTGAAAACGTAGAAACAAAATTTG 58.046 30.769 3.89 3.89 0.00 2.32
5376 6610 8.535690 TTGGTGAAAACGTAGAAACAAAATTT 57.464 26.923 0.00 0.00 0.00 1.82
5377 6611 8.030106 TCTTGGTGAAAACGTAGAAACAAAATT 58.970 29.630 0.00 0.00 0.00 1.82
5378 6612 7.540299 TCTTGGTGAAAACGTAGAAACAAAAT 58.460 30.769 0.00 0.00 0.00 1.82
5379 6613 6.910995 TCTTGGTGAAAACGTAGAAACAAAA 58.089 32.000 0.00 0.00 0.00 2.44
5380 6614 6.497785 TCTTGGTGAAAACGTAGAAACAAA 57.502 33.333 0.00 0.00 0.00 2.83
5381 6615 6.238538 GGATCTTGGTGAAAACGTAGAAACAA 60.239 38.462 0.00 0.00 0.00 2.83
5382 6616 5.237779 GGATCTTGGTGAAAACGTAGAAACA 59.762 40.000 0.00 0.00 0.00 2.83
5383 6617 5.237779 TGGATCTTGGTGAAAACGTAGAAAC 59.762 40.000 0.00 0.00 0.00 2.78
5384 6618 5.369833 TGGATCTTGGTGAAAACGTAGAAA 58.630 37.500 0.00 0.00 0.00 2.52
5385 6619 4.963373 TGGATCTTGGTGAAAACGTAGAA 58.037 39.130 0.00 0.00 0.00 2.10
5386 6620 4.610605 TGGATCTTGGTGAAAACGTAGA 57.389 40.909 0.00 0.00 0.00 2.59
5387 6621 5.178797 AGATGGATCTTGGTGAAAACGTAG 58.821 41.667 0.00 0.00 31.97 3.51
5388 6622 5.160607 AGATGGATCTTGGTGAAAACGTA 57.839 39.130 0.00 0.00 31.97 3.57
5389 6623 4.021102 AGATGGATCTTGGTGAAAACGT 57.979 40.909 0.00 0.00 31.97 3.99
5390 6624 5.817296 TCATAGATGGATCTTGGTGAAAACG 59.183 40.000 0.00 0.00 38.32 3.60
5391 6625 6.825721 ACTCATAGATGGATCTTGGTGAAAAC 59.174 38.462 0.00 0.00 38.32 2.43
5392 6626 6.962182 ACTCATAGATGGATCTTGGTGAAAA 58.038 36.000 0.00 0.00 38.32 2.29
5393 6627 6.566079 ACTCATAGATGGATCTTGGTGAAA 57.434 37.500 0.00 0.00 38.32 2.69
5394 6628 6.156775 TGAACTCATAGATGGATCTTGGTGAA 59.843 38.462 0.00 0.00 38.32 3.18
5395 6629 5.662657 TGAACTCATAGATGGATCTTGGTGA 59.337 40.000 0.00 0.00 38.32 4.02
5396 6630 5.922053 TGAACTCATAGATGGATCTTGGTG 58.078 41.667 0.00 0.00 38.32 4.17
5397 6631 6.558014 AGATGAACTCATAGATGGATCTTGGT 59.442 38.462 0.00 0.00 38.32 3.67
5398 6632 7.006865 AGATGAACTCATAGATGGATCTTGG 57.993 40.000 0.00 0.00 38.32 3.61
5399 6633 7.760794 GCTAGATGAACTCATAGATGGATCTTG 59.239 40.741 0.00 0.00 38.32 3.02
5400 6634 7.454066 TGCTAGATGAACTCATAGATGGATCTT 59.546 37.037 0.00 0.00 38.32 2.40
5401 6635 6.952938 TGCTAGATGAACTCATAGATGGATCT 59.047 38.462 0.00 0.00 40.86 2.75
5402 6636 7.167924 TGCTAGATGAACTCATAGATGGATC 57.832 40.000 0.00 0.00 36.57 3.36
5403 6637 7.385267 GTTGCTAGATGAACTCATAGATGGAT 58.615 38.462 0.00 0.00 36.57 3.41
5404 6638 6.515696 CGTTGCTAGATGAACTCATAGATGGA 60.516 42.308 0.00 0.00 36.57 3.41
5405 6639 5.632764 CGTTGCTAGATGAACTCATAGATGG 59.367 44.000 0.00 0.00 36.57 3.51
5406 6640 6.442112 TCGTTGCTAGATGAACTCATAGATG 58.558 40.000 0.00 0.00 36.57 2.90
5407 6641 6.264292 ACTCGTTGCTAGATGAACTCATAGAT 59.736 38.462 0.00 0.00 36.57 1.98
5408 6642 5.590663 ACTCGTTGCTAGATGAACTCATAGA 59.409 40.000 0.00 0.00 36.57 1.98
5409 6643 5.685068 CACTCGTTGCTAGATGAACTCATAG 59.315 44.000 0.00 0.00 36.57 2.23
5410 6644 5.357032 TCACTCGTTGCTAGATGAACTCATA 59.643 40.000 0.00 0.00 36.57 2.15
5411 6645 4.158579 TCACTCGTTGCTAGATGAACTCAT 59.841 41.667 0.00 0.00 39.70 2.90
5412 6646 3.506067 TCACTCGTTGCTAGATGAACTCA 59.494 43.478 0.00 0.00 0.00 3.41
5413 6647 4.098055 TCACTCGTTGCTAGATGAACTC 57.902 45.455 0.00 0.00 0.00 3.01
5414 6648 4.677584 GATCACTCGTTGCTAGATGAACT 58.322 43.478 0.00 0.00 0.00 3.01
5415 6649 3.483922 CGATCACTCGTTGCTAGATGAAC 59.516 47.826 0.00 0.00 40.07 3.18
5416 6650 3.489229 CCGATCACTCGTTGCTAGATGAA 60.489 47.826 0.00 0.00 43.49 2.57
5417 6651 2.033424 CCGATCACTCGTTGCTAGATGA 59.967 50.000 0.00 0.00 43.49 2.92
5418 6652 2.033424 TCCGATCACTCGTTGCTAGATG 59.967 50.000 0.00 0.00 43.49 2.90
5419 6653 2.298610 TCCGATCACTCGTTGCTAGAT 58.701 47.619 0.00 0.00 43.49 1.98
5420 6654 1.746470 TCCGATCACTCGTTGCTAGA 58.254 50.000 0.00 0.00 43.49 2.43
5421 6655 2.389059 CATCCGATCACTCGTTGCTAG 58.611 52.381 0.00 0.00 43.49 3.42
5422 6656 1.536072 GCATCCGATCACTCGTTGCTA 60.536 52.381 10.85 0.00 43.33 3.49
5423 6657 0.807667 GCATCCGATCACTCGTTGCT 60.808 55.000 10.85 0.00 43.33 3.91
5424 6658 1.083806 TGCATCCGATCACTCGTTGC 61.084 55.000 11.08 11.08 45.20 4.17
5425 6659 1.524355 GATGCATCCGATCACTCGTTG 59.476 52.381 16.23 0.00 43.49 4.10
5426 6660 1.410517 AGATGCATCCGATCACTCGTT 59.589 47.619 23.06 0.00 43.49 3.85
5427 6661 1.035923 AGATGCATCCGATCACTCGT 58.964 50.000 23.06 0.00 43.49 4.18
5428 6662 2.030805 TGTAGATGCATCCGATCACTCG 60.031 50.000 23.06 0.00 44.62 4.18
5429 6663 3.650070 TGTAGATGCATCCGATCACTC 57.350 47.619 23.06 5.75 0.00 3.51
5430 6664 4.081972 GGTATGTAGATGCATCCGATCACT 60.082 45.833 23.06 5.34 0.00 3.41
5431 6665 4.081972 AGGTATGTAGATGCATCCGATCAC 60.082 45.833 23.06 14.86 0.00 3.06
5432 6666 4.089361 AGGTATGTAGATGCATCCGATCA 58.911 43.478 23.06 16.08 0.00 2.92
5433 6667 4.727507 AGGTATGTAGATGCATCCGATC 57.272 45.455 23.06 11.27 0.00 3.69
5434 6668 5.221722 ACAAAGGTATGTAGATGCATCCGAT 60.222 40.000 23.06 14.21 0.00 4.18
5435 6669 4.100963 ACAAAGGTATGTAGATGCATCCGA 59.899 41.667 23.06 8.95 0.00 4.55
5436 6670 4.380531 ACAAAGGTATGTAGATGCATCCG 58.619 43.478 23.06 0.00 0.00 4.18
5446 6680 4.556104 GCTCGCGATCTACAAAGGTATGTA 60.556 45.833 10.36 0.00 34.75 2.29
5447 6681 3.795826 GCTCGCGATCTACAAAGGTATGT 60.796 47.826 10.36 0.00 37.32 2.29
5448 6682 2.726760 GCTCGCGATCTACAAAGGTATG 59.273 50.000 10.36 0.00 0.00 2.39
5449 6683 2.604855 CGCTCGCGATCTACAAAGGTAT 60.605 50.000 10.36 0.00 42.83 2.73
5450 6684 1.268386 CGCTCGCGATCTACAAAGGTA 60.268 52.381 10.36 0.00 42.83 3.08
5451 6685 0.525668 CGCTCGCGATCTACAAAGGT 60.526 55.000 10.36 0.00 42.83 3.50
5452 6686 1.209275 CCGCTCGCGATCTACAAAGG 61.209 60.000 10.36 0.00 42.83 3.11
5453 6687 0.248498 TCCGCTCGCGATCTACAAAG 60.248 55.000 10.36 0.00 42.83 2.77
5454 6688 0.171679 TTCCGCTCGCGATCTACAAA 59.828 50.000 10.36 0.00 42.83 2.83
5455 6689 0.248498 CTTCCGCTCGCGATCTACAA 60.248 55.000 10.36 0.00 42.83 2.41
5456 6690 1.355563 CTTCCGCTCGCGATCTACA 59.644 57.895 10.36 0.00 42.83 2.74
5457 6691 2.011881 GCTTCCGCTCGCGATCTAC 61.012 63.158 10.36 0.00 42.83 2.59
5458 6692 2.331805 GCTTCCGCTCGCGATCTA 59.668 61.111 10.36 0.00 42.83 1.98
5464 6698 2.818296 CTTTGAACGCTTCCGCTCGC 62.818 60.000 0.00 0.00 38.22 5.03
5465 6699 1.130613 CTTTGAACGCTTCCGCTCG 59.869 57.895 0.00 0.00 38.22 5.03
5466 6700 0.865769 TTCTTTGAACGCTTCCGCTC 59.134 50.000 0.00 0.00 38.22 5.03
5467 6701 0.586802 GTTCTTTGAACGCTTCCGCT 59.413 50.000 0.00 0.00 38.22 5.52
5468 6702 0.721483 CGTTCTTTGAACGCTTCCGC 60.721 55.000 17.66 0.00 36.82 5.54
5469 6703 0.110823 CCGTTCTTTGAACGCTTCCG 60.111 55.000 22.42 8.82 41.85 4.30
5470 6704 0.237498 CCCGTTCTTTGAACGCTTCC 59.763 55.000 22.42 0.00 41.85 3.46
5471 6705 0.237498 CCCCGTTCTTTGAACGCTTC 59.763 55.000 22.42 0.00 41.85 3.86
5472 6706 0.179040 TCCCCGTTCTTTGAACGCTT 60.179 50.000 22.42 0.00 41.85 4.68
5473 6707 0.036306 ATCCCCGTTCTTTGAACGCT 59.964 50.000 22.42 7.97 41.85 5.07
5474 6708 2.551644 ATCCCCGTTCTTTGAACGC 58.448 52.632 22.42 0.00 41.85 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.