Multiple sequence alignment - TraesCS3A01G201700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G201700 chr3A 100.000 2873 0 0 1 2873 337496820 337499692 0.000000e+00 5306.0
1 TraesCS3A01G201700 chr3A 98.606 1865 24 2 86 1949 747647829 747649692 0.000000e+00 3299.0
2 TraesCS3A01G201700 chr3A 88.920 713 55 17 1245 1948 265372477 265373174 0.000000e+00 857.0
3 TraesCS3A01G201700 chr3A 83.437 803 92 16 1032 1798 459067114 459067911 0.000000e+00 708.0
4 TraesCS3A01G201700 chr3A 98.837 86 1 0 1 86 747647634 747647719 1.380000e-33 154.0
5 TraesCS3A01G201700 chr7A 98.446 1866 27 1 86 1949 608237595 608235730 0.000000e+00 3284.0
6 TraesCS3A01G201700 chr7A 98.340 1867 22 3 86 1951 232345000 232346858 0.000000e+00 3267.0
7 TraesCS3A01G201700 chr7A 93.385 650 27 7 86 722 511550450 511549804 0.000000e+00 948.0
8 TraesCS3A01G201700 chr7A 96.917 519 15 1 1435 1952 661879526 661880044 0.000000e+00 869.0
9 TraesCS3A01G201700 chr7A 80.150 665 90 34 86 728 37013247 37012603 2.610000e-125 459.0
10 TraesCS3A01G201700 chr7A 90.090 333 16 7 1948 2263 254375701 254375369 1.590000e-112 416.0
11 TraesCS3A01G201700 chr7A 96.070 229 8 1 1948 2176 411950464 411950691 3.500000e-99 372.0
12 TraesCS3A01G201700 chr7A 98.837 86 1 0 1 86 232344805 232344890 1.380000e-33 154.0
13 TraesCS3A01G201700 chr7A 94.118 85 5 0 1 85 511550647 511550563 2.320000e-26 130.0
14 TraesCS3A01G201700 chr1B 98.178 1866 27 2 86 1951 4986558 4984700 0.000000e+00 3251.0
15 TraesCS3A01G201700 chr1B 89.125 1885 140 19 86 1950 65108408 65106569 0.000000e+00 2285.0
16 TraesCS3A01G201700 chr1B 86.322 870 56 23 1979 2814 283927629 283926789 0.000000e+00 889.0
17 TraesCS3A01G201700 chr1B 86.590 783 62 22 1976 2737 660246000 660246760 0.000000e+00 824.0
18 TraesCS3A01G201700 chr1B 90.722 388 28 5 1539 1919 650050504 650050118 7.100000e-141 510.0
19 TraesCS3A01G201700 chr1B 85.294 136 13 7 1820 1950 235382118 235381985 1.800000e-27 134.0
20 TraesCS3A01G201700 chr1B 94.118 85 5 0 1 85 65108605 65108521 2.320000e-26 130.0
21 TraesCS3A01G201700 chr1B 83.333 144 18 6 1505 1643 637956103 637956245 8.360000e-26 128.0
22 TraesCS3A01G201700 chr1B 93.023 86 1 1 1 86 4986748 4986668 1.400000e-23 121.0
23 TraesCS3A01G201700 chr1B 82.963 135 15 8 1812 1940 540280909 540280777 6.510000e-22 115.0
24 TraesCS3A01G201700 chr1B 81.250 144 23 4 1812 1951 4142325 4142468 2.340000e-21 113.0
25 TraesCS3A01G201700 chr1B 92.982 57 2 2 27 83 677308506 677308560 6.600000e-12 82.4
26 TraesCS3A01G201700 chr3B 95.344 1031 45 3 921 1950 35475123 35474095 0.000000e+00 1635.0
27 TraesCS3A01G201700 chr3B 95.185 810 37 2 86 895 35475910 35475103 0.000000e+00 1279.0
28 TraesCS3A01G201700 chr3B 88.145 911 70 19 1979 2873 705237165 705236277 0.000000e+00 1050.0
29 TraesCS3A01G201700 chr3B 87.819 862 52 24 1979 2814 711770439 711769605 0.000000e+00 961.0
30 TraesCS3A01G201700 chr3B 91.071 392 32 2 1562 1950 245962077 245962468 7.050000e-146 527.0
31 TraesCS3A01G201700 chr3B 87.744 359 22 9 1948 2284 377722600 377722242 1.600000e-107 399.0
32 TraesCS3A01G201700 chr3B 92.460 252 14 4 1979 2225 72555584 72555333 3.520000e-94 355.0
33 TraesCS3A01G201700 chr3B 95.349 86 4 0 1 86 35476090 35476005 1.390000e-28 137.0
34 TraesCS3A01G201700 chr3D 90.105 950 52 18 1948 2873 29741679 29742610 0.000000e+00 1195.0
35 TraesCS3A01G201700 chr3D 90.879 614 33 9 2237 2835 478338493 478339098 0.000000e+00 802.0
36 TraesCS3A01G201700 chr5D 89.855 897 63 13 1948 2835 342804487 342803610 0.000000e+00 1127.0
37 TraesCS3A01G201700 chr5D 89.583 336 11 14 1948 2261 513800102 513799769 3.450000e-109 405.0
38 TraesCS3A01G201700 chr5D 79.652 575 82 26 75 636 293426008 293425456 5.810000e-102 381.0
39 TraesCS3A01G201700 chr5D 79.279 111 16 6 1842 1949 374574985 374575091 1.430000e-08 71.3
40 TraesCS3A01G201700 chr7D 89.895 861 61 16 1979 2835 176380222 176379384 0.000000e+00 1085.0
41 TraesCS3A01G201700 chr7D 86.150 917 72 26 1979 2863 516778005 516777112 0.000000e+00 939.0
42 TraesCS3A01G201700 chr7D 88.774 579 37 15 1979 2532 556035326 556034751 0.000000e+00 684.0
43 TraesCS3A01G201700 chr7D 83.908 174 17 1 193 366 39183919 39183757 3.830000e-34 156.0
44 TraesCS3A01G201700 chr6D 87.552 956 53 30 1948 2873 350320823 350319904 0.000000e+00 1046.0
45 TraesCS3A01G201700 chr6D 82.873 181 19 2 187 366 203005975 203006144 4.960000e-33 152.0
46 TraesCS3A01G201700 chr6B 87.939 912 65 19 1979 2873 536705884 536705001 0.000000e+00 1033.0
47 TraesCS3A01G201700 chr6B 84.761 794 82 19 1034 1798 528085089 528085872 0.000000e+00 760.0
48 TraesCS3A01G201700 chr6B 79.762 672 92 35 75 722 430538557 430539208 5.650000e-122 448.0
49 TraesCS3A01G201700 chr6B 86.765 136 11 7 1820 1950 474540111 474539978 8.300000e-31 145.0
50 TraesCS3A01G201700 chr6B 85.185 135 17 1 1823 1954 248357498 248357364 4.990000e-28 135.0
51 TraesCS3A01G201700 chr2B 87.218 931 80 18 1034 1937 90632557 90633475 0.000000e+00 1024.0
52 TraesCS3A01G201700 chr2B 92.327 391 28 2 1562 1951 771167971 771168360 3.230000e-154 555.0
53 TraesCS3A01G201700 chr2B 86.861 137 11 7 1820 1951 127166619 127166753 2.310000e-31 147.0
54 TraesCS3A01G201700 chr6A 85.833 960 77 22 1948 2873 302840383 302839449 0.000000e+00 965.0
55 TraesCS3A01G201700 chr6A 83.151 730 84 15 1034 1727 171446209 171446935 5.220000e-177 630.0
56 TraesCS3A01G201700 chr6A 92.893 394 25 3 1562 1954 317608909 317609300 1.160000e-158 569.0
57 TraesCS3A01G201700 chr6A 79.619 682 97 33 75 733 249211139 249211801 4.370000e-123 451.0
58 TraesCS3A01G201700 chr6A 92.832 279 17 2 1948 2225 338129490 338129214 4.460000e-108 401.0
59 TraesCS3A01G201700 chr6A 85.816 141 12 8 1820 1954 462594455 462594593 2.980000e-30 143.0
60 TraesCS3A01G201700 chr4A 86.288 897 91 19 1976 2871 701277669 701278534 0.000000e+00 946.0
61 TraesCS3A01G201700 chr4A 89.474 627 48 12 2256 2873 404516534 404517151 0.000000e+00 776.0
62 TraesCS3A01G201700 chr4D 93.645 598 22 5 2288 2873 464044252 464044845 0.000000e+00 880.0
63 TraesCS3A01G201700 chr4D 80.412 97 13 5 1856 1948 210462526 210462432 5.140000e-08 69.4
64 TraesCS3A01G201700 chr2D 86.098 820 62 21 2075 2873 430831612 430832400 0.000000e+00 835.0
65 TraesCS3A01G201700 chr1A 92.327 391 29 1 1562 1951 446716610 446717000 3.230000e-154 555.0
66 TraesCS3A01G201700 chr1A 92.327 391 27 2 1562 1951 74754733 74755121 1.160000e-153 553.0
67 TraesCS3A01G201700 chr1A 79.790 668 98 28 86 733 223817703 223817053 4.370000e-123 451.0
68 TraesCS3A01G201700 chr5A 91.821 379 29 2 1562 1939 229496676 229497053 7.050000e-146 527.0
69 TraesCS3A01G201700 chr5A 81.132 689 89 29 75 735 10620917 10620242 5.490000e-142 514.0
70 TraesCS3A01G201700 chr5A 92.357 314 18 4 1948 2257 190356236 190355925 2.630000e-120 442.0
71 TraesCS3A01G201700 chr5A 81.283 561 82 17 86 636 386245446 386244899 1.580000e-117 433.0
72 TraesCS3A01G201700 chr5A 89.273 289 17 6 1948 2225 156704644 156704929 1.640000e-92 350.0
73 TraesCS3A01G201700 chrUn 80.339 590 93 16 153 732 70320838 70321414 2.650000e-115 425.0
74 TraesCS3A01G201700 chrUn 80.446 583 84 23 161 733 2929496 2930058 4.430000e-113 418.0
75 TraesCS3A01G201700 chrUn 86.466 133 11 7 1824 1951 288592526 288592656 3.860000e-29 139.0
76 TraesCS3A01G201700 chrUn 86.466 133 11 7 1824 1951 288598521 288598651 3.860000e-29 139.0
77 TraesCS3A01G201700 chrUn 86.466 133 11 7 1824 1951 306049850 306049720 3.860000e-29 139.0
78 TraesCS3A01G201700 chrUn 79.861 144 25 4 1812 1951 392955852 392955995 5.060000e-18 102.0
79 TraesCS3A01G201700 chrUn 81.818 121 17 3 1831 1946 122292609 122292489 2.360000e-16 97.1
80 TraesCS3A01G201700 chrUn 98.077 52 0 1 1902 1953 334746753 334746703 3.940000e-14 89.8
81 TraesCS3A01G201700 chrUn 83.333 96 15 1 1857 1951 462688130 462688225 1.420000e-13 87.9
82 TraesCS3A01G201700 chrUn 79.439 107 17 3 1839 1940 8432436 8432330 1.430000e-08 71.3
83 TraesCS3A01G201700 chrUn 100.000 36 0 0 1905 1940 122297473 122297438 1.850000e-07 67.6
84 TraesCS3A01G201700 chr7B 80.797 552 81 19 197 736 621456764 621457302 2.660000e-110 409.0
85 TraesCS3A01G201700 chr7B 83.568 426 49 10 979 1403 494727031 494727436 2.090000e-101 379.0
86 TraesCS3A01G201700 chr7B 88.112 143 13 2 1505 1643 263742754 263742612 1.770000e-37 167.0
87 TraesCS3A01G201700 chr7B 86.567 134 12 6 1820 1949 721298217 721298086 2.980000e-30 143.0
88 TraesCS3A01G201700 chr4B 77.619 630 87 37 83 691 16226524 16227120 1.650000e-87 333.0
89 TraesCS3A01G201700 chr4B 86.239 109 7 8 1846 1951 245453042 245452939 8.410000e-21 111.0
90 TraesCS3A01G201700 chr4B 81.752 137 20 5 1820 1951 1878570 1878434 3.030000e-20 110.0
91 TraesCS3A01G201700 chr4B 85.437 103 10 5 1852 1951 473125457 473125557 5.060000e-18 102.0
92 TraesCS3A01G201700 chr4B 82.301 113 18 2 1843 1953 491122614 491122726 2.360000e-16 97.1
93 TraesCS3A01G201700 chr5B 77.288 612 98 28 93 683 660843184 660843775 3.570000e-84 322.0
94 TraesCS3A01G201700 chr5B 81.944 144 18 8 1812 1949 632113638 632113779 6.510000e-22 115.0
95 TraesCS3A01G201700 chr5B 81.457 151 16 11 1811 1951 686447265 686447117 2.340000e-21 113.0
96 TraesCS3A01G201700 chr1D 88.462 52 4 2 1900 1949 89989020 89988969 8.600000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G201700 chr3A 337496820 337499692 2872 False 5306.0 5306 100.000000 1 2873 1 chr3A.!!$F2 2872
1 TraesCS3A01G201700 chr3A 747647634 747649692 2058 False 1726.5 3299 98.721500 1 1949 2 chr3A.!!$F4 1948
2 TraesCS3A01G201700 chr3A 265372477 265373174 697 False 857.0 857 88.920000 1245 1948 1 chr3A.!!$F1 703
3 TraesCS3A01G201700 chr3A 459067114 459067911 797 False 708.0 708 83.437000 1032 1798 1 chr3A.!!$F3 766
4 TraesCS3A01G201700 chr7A 608235730 608237595 1865 True 3284.0 3284 98.446000 86 1949 1 chr7A.!!$R3 1863
5 TraesCS3A01G201700 chr7A 232344805 232346858 2053 False 1710.5 3267 98.588500 1 1951 2 chr7A.!!$F3 1950
6 TraesCS3A01G201700 chr7A 661879526 661880044 518 False 869.0 869 96.917000 1435 1952 1 chr7A.!!$F2 517
7 TraesCS3A01G201700 chr7A 511549804 511550647 843 True 539.0 948 93.751500 1 722 2 chr7A.!!$R4 721
8 TraesCS3A01G201700 chr7A 37012603 37013247 644 True 459.0 459 80.150000 86 728 1 chr7A.!!$R1 642
9 TraesCS3A01G201700 chr1B 4984700 4986748 2048 True 1686.0 3251 95.600500 1 1951 2 chr1B.!!$R5 1950
10 TraesCS3A01G201700 chr1B 65106569 65108605 2036 True 1207.5 2285 91.621500 1 1950 2 chr1B.!!$R6 1949
11 TraesCS3A01G201700 chr1B 283926789 283927629 840 True 889.0 889 86.322000 1979 2814 1 chr1B.!!$R2 835
12 TraesCS3A01G201700 chr1B 660246000 660246760 760 False 824.0 824 86.590000 1976 2737 1 chr1B.!!$F3 761
13 TraesCS3A01G201700 chr3B 705236277 705237165 888 True 1050.0 1050 88.145000 1979 2873 1 chr3B.!!$R3 894
14 TraesCS3A01G201700 chr3B 35474095 35476090 1995 True 1017.0 1635 95.292667 1 1950 3 chr3B.!!$R5 1949
15 TraesCS3A01G201700 chr3B 711769605 711770439 834 True 961.0 961 87.819000 1979 2814 1 chr3B.!!$R4 835
16 TraesCS3A01G201700 chr3D 29741679 29742610 931 False 1195.0 1195 90.105000 1948 2873 1 chr3D.!!$F1 925
17 TraesCS3A01G201700 chr3D 478338493 478339098 605 False 802.0 802 90.879000 2237 2835 1 chr3D.!!$F2 598
18 TraesCS3A01G201700 chr5D 342803610 342804487 877 True 1127.0 1127 89.855000 1948 2835 1 chr5D.!!$R2 887
19 TraesCS3A01G201700 chr5D 293425456 293426008 552 True 381.0 381 79.652000 75 636 1 chr5D.!!$R1 561
20 TraesCS3A01G201700 chr7D 176379384 176380222 838 True 1085.0 1085 89.895000 1979 2835 1 chr7D.!!$R2 856
21 TraesCS3A01G201700 chr7D 516777112 516778005 893 True 939.0 939 86.150000 1979 2863 1 chr7D.!!$R3 884
22 TraesCS3A01G201700 chr7D 556034751 556035326 575 True 684.0 684 88.774000 1979 2532 1 chr7D.!!$R4 553
23 TraesCS3A01G201700 chr6D 350319904 350320823 919 True 1046.0 1046 87.552000 1948 2873 1 chr6D.!!$R1 925
24 TraesCS3A01G201700 chr6B 536705001 536705884 883 True 1033.0 1033 87.939000 1979 2873 1 chr6B.!!$R3 894
25 TraesCS3A01G201700 chr6B 528085089 528085872 783 False 760.0 760 84.761000 1034 1798 1 chr6B.!!$F2 764
26 TraesCS3A01G201700 chr6B 430538557 430539208 651 False 448.0 448 79.762000 75 722 1 chr6B.!!$F1 647
27 TraesCS3A01G201700 chr2B 90632557 90633475 918 False 1024.0 1024 87.218000 1034 1937 1 chr2B.!!$F1 903
28 TraesCS3A01G201700 chr6A 302839449 302840383 934 True 965.0 965 85.833000 1948 2873 1 chr6A.!!$R1 925
29 TraesCS3A01G201700 chr6A 171446209 171446935 726 False 630.0 630 83.151000 1034 1727 1 chr6A.!!$F1 693
30 TraesCS3A01G201700 chr6A 249211139 249211801 662 False 451.0 451 79.619000 75 733 1 chr6A.!!$F2 658
31 TraesCS3A01G201700 chr4A 701277669 701278534 865 False 946.0 946 86.288000 1976 2871 1 chr4A.!!$F2 895
32 TraesCS3A01G201700 chr4A 404516534 404517151 617 False 776.0 776 89.474000 2256 2873 1 chr4A.!!$F1 617
33 TraesCS3A01G201700 chr4D 464044252 464044845 593 False 880.0 880 93.645000 2288 2873 1 chr4D.!!$F1 585
34 TraesCS3A01G201700 chr2D 430831612 430832400 788 False 835.0 835 86.098000 2075 2873 1 chr2D.!!$F1 798
35 TraesCS3A01G201700 chr1A 223817053 223817703 650 True 451.0 451 79.790000 86 733 1 chr1A.!!$R1 647
36 TraesCS3A01G201700 chr5A 10620242 10620917 675 True 514.0 514 81.132000 75 735 1 chr5A.!!$R1 660
37 TraesCS3A01G201700 chr5A 386244899 386245446 547 True 433.0 433 81.283000 86 636 1 chr5A.!!$R3 550
38 TraesCS3A01G201700 chrUn 70320838 70321414 576 False 425.0 425 80.339000 153 732 1 chrUn.!!$F2 579
39 TraesCS3A01G201700 chrUn 2929496 2930058 562 False 418.0 418 80.446000 161 733 1 chrUn.!!$F1 572
40 TraesCS3A01G201700 chr7B 621456764 621457302 538 False 409.0 409 80.797000 197 736 1 chr7B.!!$F2 539
41 TraesCS3A01G201700 chr4B 16226524 16227120 596 False 333.0 333 77.619000 83 691 1 chr4B.!!$F1 608
42 TraesCS3A01G201700 chr5B 660843184 660843775 591 False 322.0 322 77.288000 93 683 1 chr5B.!!$F2 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 1064 1.130054 TTGCTGAGCCCTTCCTCTGT 61.13 55.0 0.23 0.0 34.44 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2577 3074 1.284198 ACTCCATCCATGCAAGCTTCT 59.716 47.619 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
654 856 6.924060 TGGGTTTACAAATTATGTTTGGTTCG 59.076 34.615 9.36 0.00 43.63 3.95
746 952 6.060788 AGCAAAATTTTCTTTGTTGCCCATA 58.939 32.000 0.00 0.00 44.42 2.74
748 954 7.067981 AGCAAAATTTTCTTTGTTGCCCATAAA 59.932 29.630 0.00 0.00 44.42 1.40
833 1039 2.117910 GTATGTCTCGTCTTAAGGCGC 58.882 52.381 24.25 11.31 0.00 6.53
858 1064 1.130054 TTGCTGAGCCCTTCCTCTGT 61.130 55.000 0.23 0.00 34.44 3.41
1077 1283 4.626942 TCTCCCTCTTCCCTTATTCTCA 57.373 45.455 0.00 0.00 0.00 3.27
1347 1582 2.647158 GGAACTTCGAGCCGACCCT 61.647 63.158 0.00 0.00 34.89 4.34
1429 1665 4.069232 CTGCCTCGCCGTCCTTCA 62.069 66.667 0.00 0.00 0.00 3.02
1870 2174 1.275010 GGGATTGCGGGTTGATTTTGT 59.725 47.619 0.00 0.00 0.00 2.83
1884 2188 7.780271 GGGTTGATTTTGTAGAAATAGAGGGAT 59.220 37.037 0.00 0.00 0.00 3.85
1998 2315 8.050778 TCCAAAATTACCTATGTTAGCACAAG 57.949 34.615 0.00 0.00 36.16 3.16
2250 2661 5.861787 GTCTTCTTCTCCTTCTTCTTCTTCG 59.138 44.000 0.00 0.00 0.00 3.79
2251 2662 4.181309 TCTTCTCCTTCTTCTTCTTCGC 57.819 45.455 0.00 0.00 0.00 4.70
2264 2675 5.723672 TCTTCTTCGCCTTCTTCTTCTTA 57.276 39.130 0.00 0.00 0.00 2.10
2267 2678 7.837863 TCTTCTTCGCCTTCTTCTTCTTATTA 58.162 34.615 0.00 0.00 0.00 0.98
2331 2768 8.090788 TCCAAAATGACCTAAGTTAGCTCTAT 57.909 34.615 4.22 0.00 0.00 1.98
2444 2887 8.579850 AGTTCACTCAAAGATGGCATAATTAA 57.420 30.769 0.00 0.00 0.00 1.40
2577 3074 9.361315 CATTTTGCAGATTTCATCTAATTCACA 57.639 29.630 0.00 0.00 37.58 3.58
2692 3197 3.745799 ACGGTGTTGGATGAACAATGTA 58.254 40.909 0.00 0.00 46.30 2.29
2703 3208 8.006298 TGGATGAACAATGTAAAACTTCTGTT 57.994 30.769 0.00 0.00 38.16 3.16
2859 3414 6.780198 AAAAACAGGGGCTATATAGGATCA 57.220 37.500 11.72 0.00 0.00 2.92
2864 3419 5.792712 ACAGGGGCTATATAGGATCATTGTT 59.207 40.000 11.72 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.233553 CCACTACTCTTCCATCATATTACTCCA 59.766 40.741 0.00 0.00 0.00 3.86
746 952 1.819305 GCCTCCACCCGCATGATATTT 60.819 52.381 0.00 0.00 0.00 1.40
748 954 1.376466 GCCTCCACCCGCATGATAT 59.624 57.895 0.00 0.00 0.00 1.63
750 956 4.195334 GGCCTCCACCCGCATGAT 62.195 66.667 0.00 0.00 0.00 2.45
833 1039 1.066645 GGAAGGGCTCAGCAAATTTGG 60.067 52.381 19.47 4.32 0.00 3.28
858 1064 4.487714 AGAATGGGATAAGCTTCAACGA 57.512 40.909 0.00 0.00 0.00 3.85
1029 1235 0.039618 GAAAGGAATGCAGGGGGACA 59.960 55.000 0.00 0.00 0.00 4.02
1077 1283 5.104318 GGGAGATGAGAGTAAACTGGGAAAT 60.104 44.000 0.00 0.00 0.00 2.17
1347 1582 4.783621 GGCGGTCTCCATGCTGCA 62.784 66.667 4.13 4.13 38.65 4.41
1884 2188 5.029014 CGTCGTCACCAATTTACAAAAACA 58.971 37.500 0.00 0.00 0.00 2.83
1998 2315 9.722184 GGGAAATAAGGTAAGTATAGGTCATTC 57.278 37.037 0.00 0.00 0.00 2.67
2209 2563 9.975218 AGAAGAAGACTAGAAGAAGAAGACTAT 57.025 33.333 0.00 0.00 0.00 2.12
2276 2687 9.830975 GAAGAAGAAGAAGAAGGCTAGAATAAT 57.169 33.333 0.00 0.00 0.00 1.28
2286 2697 6.107901 TGGAGAAGAAGAAGAAGAAGAAGG 57.892 41.667 0.00 0.00 0.00 3.46
2444 2887 7.402361 ACTTAGGTAAAATGGAGCTAACCTAGT 59.598 37.037 0.00 0.00 39.90 2.57
2577 3074 1.284198 ACTCCATCCATGCAAGCTTCT 59.716 47.619 0.00 0.00 0.00 2.85
2713 3224 8.902806 CATACATAACCAACACATAGTTCCATT 58.097 33.333 0.00 0.00 38.74 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.