Multiple sequence alignment - TraesCS3A01G199900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G199900 chr3A 100.000 4900 0 0 938 5837 328932882 328927983 0.000000e+00 9049.0
1 TraesCS3A01G199900 chr3A 100.000 637 0 0 1 637 328933819 328933183 0.000000e+00 1177.0
2 TraesCS3A01G199900 chr3A 86.378 925 108 17 2847 3766 26924066 26924977 0.000000e+00 994.0
3 TraesCS3A01G199900 chr3A 86.452 930 99 21 2847 3771 96228990 96228083 0.000000e+00 994.0
4 TraesCS3A01G199900 chr3A 86.218 936 104 19 2847 3771 96000996 96000075 0.000000e+00 990.0
5 TraesCS3A01G199900 chr3A 94.456 469 18 6 5375 5837 740082882 740083348 0.000000e+00 715.0
6 TraesCS3A01G199900 chr3D 96.258 1737 57 6 938 2672 254365486 254363756 0.000000e+00 2841.0
7 TraesCS3A01G199900 chr3D 92.003 1313 60 26 3765 5042 254363721 254362419 0.000000e+00 1801.0
8 TraesCS3A01G199900 chr3D 86.101 849 103 10 2929 3768 120895040 120894198 0.000000e+00 900.0
9 TraesCS3A01G199900 chr3D 97.101 414 11 1 225 637 254365909 254365496 0.000000e+00 697.0
10 TraesCS3A01G199900 chr3D 95.172 145 7 0 2704 2848 134495858 134496002 4.550000e-56 230.0
11 TraesCS3A01G199900 chr3B 95.353 1786 53 11 938 2720 306583458 306581700 0.000000e+00 2811.0
12 TraesCS3A01G199900 chr3B 95.353 1033 34 7 4003 5033 306581335 306580315 0.000000e+00 1629.0
13 TraesCS3A01G199900 chr3B 86.009 922 121 8 2850 3766 803485678 803484760 0.000000e+00 981.0
14 TraesCS3A01G199900 chr3B 97.311 409 10 1 230 637 306583876 306583468 0.000000e+00 693.0
15 TraesCS3A01G199900 chr3B 95.906 171 7 0 3765 3935 306581700 306581530 1.600000e-70 278.0
16 TraesCS3A01G199900 chr3B 87.444 223 26 2 5179 5400 141802372 141802151 7.510000e-64 255.0
17 TraesCS3A01G199900 chr3B 95.946 74 3 0 3934 4007 306581436 306581363 2.860000e-23 121.0
18 TraesCS3A01G199900 chr7B 87.083 929 102 15 2847 3769 453015949 453016865 0.000000e+00 1035.0
19 TraesCS3A01G199900 chr7B 92.718 206 12 3 1 205 740955209 740955412 1.590000e-75 294.0
20 TraesCS3A01G199900 chr7B 86.996 223 27 2 5179 5400 562394241 562394462 3.490000e-62 250.0
21 TraesCS3A01G199900 chr7B 83.260 227 26 7 2199 2415 246266753 246266977 1.280000e-46 198.0
22 TraesCS3A01G199900 chrUn 85.931 924 123 7 2847 3766 306349506 306350426 0.000000e+00 979.0
23 TraesCS3A01G199900 chrUn 85.714 924 124 8 2847 3766 337028839 337029758 0.000000e+00 968.0
24 TraesCS3A01G199900 chr1D 85.931 924 118 9 2847 3766 350298488 350297573 0.000000e+00 976.0
25 TraesCS3A01G199900 chr1D 97.297 37 1 0 4953 4989 208856924 208856888 4.880000e-06 63.9
26 TraesCS3A01G199900 chr1D 97.297 37 1 0 4953 4989 228293133 228293169 4.880000e-06 63.9
27 TraesCS3A01G199900 chr2A 93.062 663 42 3 5179 5837 690349922 690349260 0.000000e+00 966.0
28 TraesCS3A01G199900 chr2A 85.714 924 121 10 2847 3766 382274363 382273447 0.000000e+00 965.0
29 TraesCS3A01G199900 chr2A 85.345 232 32 2 5169 5399 43450237 43450467 7.560000e-59 239.0
30 TraesCS3A01G199900 chr4A 88.793 696 42 19 5175 5837 534182671 534183363 0.000000e+00 821.0
31 TraesCS3A01G199900 chr4A 92.683 205 12 3 1 205 89600878 89601079 5.720000e-75 292.0
32 TraesCS3A01G199900 chr5A 88.489 695 45 19 5176 5837 30148273 30147581 0.000000e+00 808.0
33 TraesCS3A01G199900 chr5A 88.075 696 48 18 5175 5837 612764669 612763976 0.000000e+00 793.0
34 TraesCS3A01G199900 chr5A 87.787 696 48 20 5176 5837 523627959 523627267 0.000000e+00 780.0
35 TraesCS3A01G199900 chr5A 92.195 205 14 2 1 205 595031506 595031708 7.400000e-74 289.0
36 TraesCS3A01G199900 chr5A 91.707 205 15 2 1 205 125270358 125270560 3.440000e-72 283.0
37 TraesCS3A01G199900 chr2D 86.676 698 58 15 5174 5837 343678841 343679537 0.000000e+00 741.0
38 TraesCS3A01G199900 chr7A 94.456 469 18 6 5375 5837 546253468 546253002 0.000000e+00 715.0
39 TraesCS3A01G199900 chr7A 94.624 465 18 5 5375 5837 665985366 665984907 0.000000e+00 713.0
40 TraesCS3A01G199900 chr7A 95.187 187 8 1 1 187 17475220 17475035 1.590000e-75 294.0
41 TraesCS3A01G199900 chr7A 88.261 230 27 0 5174 5403 492499825 492499596 5.760000e-70 276.0
42 TraesCS3A01G199900 chr7A 93.023 43 2 1 4947 4989 127774308 127774267 1.760000e-05 62.1
43 TraesCS3A01G199900 chr1A 94.030 469 20 6 5375 5837 49337680 49338146 0.000000e+00 704.0
44 TraesCS3A01G199900 chr1A 91.707 205 15 2 1 205 10978659 10978457 3.440000e-72 283.0
45 TraesCS3A01G199900 chr1A 91.707 205 15 2 1 205 521994611 521994409 3.440000e-72 283.0
46 TraesCS3A01G199900 chr1A 96.324 136 4 1 2714 2848 486045764 486045899 7.610000e-54 222.0
47 TraesCS3A01G199900 chr4B 92.478 226 16 1 5179 5404 88734975 88734751 7.300000e-84 322.0
48 TraesCS3A01G199900 chr4B 96.296 135 5 0 2714 2848 13408955 13409089 7.610000e-54 222.0
49 TraesCS3A01G199900 chr6B 92.195 205 14 2 1 205 558516044 558516246 7.400000e-74 289.0
50 TraesCS3A01G199900 chr6B 93.197 147 9 1 2703 2849 334452329 334452474 1.270000e-51 215.0
51 TraesCS3A01G199900 chr6A 91.707 205 15 2 1 205 305755397 305755195 3.440000e-72 283.0
52 TraesCS3A01G199900 chr6A 95.745 141 5 1 2712 2851 554386267 554386127 5.890000e-55 226.0
53 TraesCS3A01G199900 chr6A 96.992 133 3 1 2717 2849 595074362 595074231 7.610000e-54 222.0
54 TraesCS3A01G199900 chr4D 86.667 225 30 0 5176 5400 30921015 30920791 3.490000e-62 250.0
55 TraesCS3A01G199900 chr5B 86.547 223 27 3 5179 5400 234818963 234818743 5.840000e-60 243.0
56 TraesCS3A01G199900 chr5D 97.727 132 2 1 2718 2848 452850811 452850680 5.890000e-55 226.0
57 TraesCS3A01G199900 chr7D 98.425 127 2 0 2722 2848 150359427 150359301 2.120000e-54 224.0
58 TraesCS3A01G199900 chr7D 93.023 43 2 1 4947 4989 127000374 127000333 1.760000e-05 62.1
59 TraesCS3A01G199900 chr7D 94.444 36 2 0 4954 4989 461952503 461952468 8.170000e-04 56.5
60 TraesCS3A01G199900 chr2B 96.296 135 5 0 2717 2851 51891499 51891365 7.610000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G199900 chr3A 328927983 328933819 5836 True 5113.000000 9049 100.000000 1 5837 2 chr3A.!!$R3 5836
1 TraesCS3A01G199900 chr3A 26924066 26924977 911 False 994.000000 994 86.378000 2847 3766 1 chr3A.!!$F1 919
2 TraesCS3A01G199900 chr3A 96228083 96228990 907 True 994.000000 994 86.452000 2847 3771 1 chr3A.!!$R2 924
3 TraesCS3A01G199900 chr3A 96000075 96000996 921 True 990.000000 990 86.218000 2847 3771 1 chr3A.!!$R1 924
4 TraesCS3A01G199900 chr3D 254362419 254365909 3490 True 1779.666667 2841 95.120667 225 5042 3 chr3D.!!$R2 4817
5 TraesCS3A01G199900 chr3D 120894198 120895040 842 True 900.000000 900 86.101000 2929 3768 1 chr3D.!!$R1 839
6 TraesCS3A01G199900 chr3B 306580315 306583876 3561 True 1106.400000 2811 95.973800 230 5033 5 chr3B.!!$R3 4803
7 TraesCS3A01G199900 chr3B 803484760 803485678 918 True 981.000000 981 86.009000 2850 3766 1 chr3B.!!$R2 916
8 TraesCS3A01G199900 chr7B 453015949 453016865 916 False 1035.000000 1035 87.083000 2847 3769 1 chr7B.!!$F2 922
9 TraesCS3A01G199900 chrUn 306349506 306350426 920 False 979.000000 979 85.931000 2847 3766 1 chrUn.!!$F1 919
10 TraesCS3A01G199900 chrUn 337028839 337029758 919 False 968.000000 968 85.714000 2847 3766 1 chrUn.!!$F2 919
11 TraesCS3A01G199900 chr1D 350297573 350298488 915 True 976.000000 976 85.931000 2847 3766 1 chr1D.!!$R2 919
12 TraesCS3A01G199900 chr2A 690349260 690349922 662 True 966.000000 966 93.062000 5179 5837 1 chr2A.!!$R2 658
13 TraesCS3A01G199900 chr2A 382273447 382274363 916 True 965.000000 965 85.714000 2847 3766 1 chr2A.!!$R1 919
14 TraesCS3A01G199900 chr4A 534182671 534183363 692 False 821.000000 821 88.793000 5175 5837 1 chr4A.!!$F2 662
15 TraesCS3A01G199900 chr5A 30147581 30148273 692 True 808.000000 808 88.489000 5176 5837 1 chr5A.!!$R1 661
16 TraesCS3A01G199900 chr5A 612763976 612764669 693 True 793.000000 793 88.075000 5175 5837 1 chr5A.!!$R3 662
17 TraesCS3A01G199900 chr5A 523627267 523627959 692 True 780.000000 780 87.787000 5176 5837 1 chr5A.!!$R2 661
18 TraesCS3A01G199900 chr2D 343678841 343679537 696 False 741.000000 741 86.676000 5174 5837 1 chr2D.!!$F1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.249405 CGTTGCAACACAAGGGCATT 60.249 50.000 28.01 0.00 39.50 3.56 F
424 427 0.849540 CCCTCCCCCAAAACCCTAGT 60.850 60.000 0.00 0.00 0.00 2.57 F
1119 1122 0.798771 CGCTCAGTTACCTCGACTGC 60.799 60.000 0.00 0.00 43.23 4.40 F
1285 1288 1.178534 TTGGGGTGTAGCTTTGCTGC 61.179 55.000 0.00 1.36 40.10 5.25 F
2188 2198 1.405463 TGCGTACATGCTACTGGAGAG 59.595 52.381 0.00 0.00 35.36 3.20 F
2740 2763 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17 F
2743 2766 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
3232 3277 0.607620 AATGCGTTGATTTGGTGGGG 59.392 50.000 0.00 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1110 0.815734 GGCTAGTGCAGTCGAGGTAA 59.184 55.000 0.00 0.0 41.91 2.85 R
1390 1393 1.031571 TCCCATTGGCGTGATCAAGC 61.032 55.000 23.40 23.4 35.05 4.01 R
2721 2744 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.0 46.06 2.59 R
2722 2745 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.0 46.06 3.85 R
3844 3898 0.515127 TACGGCAAGACACAAATGCG 59.485 50.000 0.00 0.0 40.94 4.73 R
4631 4814 1.745087 CCAAACAGATTATGTGGCGCT 59.255 47.619 7.64 0.0 43.00 5.92 R
4665 4848 5.043248 AGTTTTCTTGCGGATGAAACTTTG 58.957 37.500 15.88 0.0 32.72 2.77 R
5074 5257 0.095245 CTAATTGTGACGTGCGGCTG 59.905 55.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.051879 ATCTGTCAGACACGACAACG 57.948 50.000 4.21 0.00 44.97 4.10
43 44 5.118560 CGTTCATGTCGAATGTGTTCTAG 57.881 43.478 7.11 0.00 36.11 2.43
44 45 4.857037 CGTTCATGTCGAATGTGTTCTAGA 59.143 41.667 7.11 0.00 36.11 2.43
45 46 5.344933 CGTTCATGTCGAATGTGTTCTAGAA 59.655 40.000 0.00 0.00 36.11 2.10
46 47 6.128929 CGTTCATGTCGAATGTGTTCTAGAAA 60.129 38.462 6.78 0.00 36.11 2.52
47 48 7.411912 CGTTCATGTCGAATGTGTTCTAGAAAT 60.412 37.037 6.78 0.00 36.11 2.17
48 49 7.294676 TCATGTCGAATGTGTTCTAGAAATG 57.705 36.000 6.78 3.64 32.00 2.32
49 50 6.873605 TCATGTCGAATGTGTTCTAGAAATGT 59.126 34.615 6.78 0.00 29.05 2.71
50 51 7.387673 TCATGTCGAATGTGTTCTAGAAATGTT 59.612 33.333 6.78 0.27 29.05 2.71
51 52 7.117241 TGTCGAATGTGTTCTAGAAATGTTC 57.883 36.000 6.78 8.52 32.00 3.18
52 53 6.929049 TGTCGAATGTGTTCTAGAAATGTTCT 59.071 34.615 6.78 0.00 43.72 3.01
53 54 7.441157 TGTCGAATGTGTTCTAGAAATGTTCTT 59.559 33.333 6.78 0.00 41.14 2.52
54 55 7.952637 GTCGAATGTGTTCTAGAAATGTTCTTC 59.047 37.037 6.78 5.45 41.14 2.87
55 56 6.950428 CGAATGTGTTCTAGAAATGTTCTTCG 59.050 38.462 6.78 12.65 41.14 3.79
56 57 7.148804 CGAATGTGTTCTAGAAATGTTCTTCGA 60.149 37.037 20.20 0.00 41.14 3.71
57 58 8.553459 AATGTGTTCTAGAAATGTTCTTCGAT 57.447 30.769 6.78 0.00 41.14 3.59
58 59 9.653287 AATGTGTTCTAGAAATGTTCTTCGATA 57.347 29.630 6.78 0.00 41.14 2.92
59 60 9.653287 ATGTGTTCTAGAAATGTTCTTCGATAA 57.347 29.630 6.78 0.00 41.14 1.75
60 61 9.483916 TGTGTTCTAGAAATGTTCTTCGATAAA 57.516 29.630 6.78 0.00 41.14 1.40
95 96 8.235359 AGCTCTTACTATTTTAGTATGGTCGT 57.765 34.615 7.39 0.00 40.66 4.34
96 97 9.347240 AGCTCTTACTATTTTAGTATGGTCGTA 57.653 33.333 7.39 0.00 40.66 3.43
97 98 9.956720 GCTCTTACTATTTTAGTATGGTCGTAA 57.043 33.333 7.39 0.00 40.66 3.18
123 124 9.559732 AATTTATCAATTCACATATCACTCCGA 57.440 29.630 0.00 0.00 0.00 4.55
124 125 9.730705 ATTTATCAATTCACATATCACTCCGAT 57.269 29.630 0.00 0.00 38.21 4.18
128 129 8.365399 TCAATTCACATATCACTCCGATAAAC 57.635 34.615 0.00 0.00 40.04 2.01
129 130 7.984617 TCAATTCACATATCACTCCGATAAACA 59.015 33.333 0.00 0.00 40.04 2.83
130 131 8.611757 CAATTCACATATCACTCCGATAAACAA 58.388 33.333 0.00 0.00 40.04 2.83
131 132 8.908786 ATTCACATATCACTCCGATAAACAAT 57.091 30.769 0.00 0.00 40.04 2.71
132 133 8.731275 TTCACATATCACTCCGATAAACAATT 57.269 30.769 0.00 0.00 40.04 2.32
133 134 8.731275 TCACATATCACTCCGATAAACAATTT 57.269 30.769 0.00 0.00 40.04 1.82
134 135 9.173021 TCACATATCACTCCGATAAACAATTTT 57.827 29.630 0.00 0.00 40.04 1.82
135 136 9.787532 CACATATCACTCCGATAAACAATTTTT 57.212 29.630 0.00 0.00 40.04 1.94
140 141 9.840427 ATCACTCCGATAAACAATTTTTAGTTG 57.160 29.630 0.00 0.00 30.32 3.16
141 142 8.293867 TCACTCCGATAAACAATTTTTAGTTGG 58.706 33.333 0.00 0.00 0.00 3.77
142 143 7.540745 CACTCCGATAAACAATTTTTAGTTGGG 59.459 37.037 0.00 0.00 0.00 4.12
143 144 7.449086 ACTCCGATAAACAATTTTTAGTTGGGA 59.551 33.333 0.00 0.00 0.00 4.37
144 145 8.179509 TCCGATAAACAATTTTTAGTTGGGAA 57.820 30.769 0.00 0.00 0.00 3.97
145 146 8.639761 TCCGATAAACAATTTTTAGTTGGGAAA 58.360 29.630 0.00 0.00 0.00 3.13
146 147 9.262358 CCGATAAACAATTTTTAGTTGGGAAAA 57.738 29.630 0.00 0.00 0.00 2.29
152 153 9.898152 AACAATTTTTAGTTGGGAAAATCAAGA 57.102 25.926 0.00 0.00 35.14 3.02
153 154 9.898152 ACAATTTTTAGTTGGGAAAATCAAGAA 57.102 25.926 0.00 0.00 35.14 2.52
159 160 9.816354 TTTAGTTGGGAAAATCAAGAAAGAAAG 57.184 29.630 0.00 0.00 0.00 2.62
160 161 7.660030 AGTTGGGAAAATCAAGAAAGAAAGA 57.340 32.000 0.00 0.00 0.00 2.52
161 162 8.078060 AGTTGGGAAAATCAAGAAAGAAAGAA 57.922 30.769 0.00 0.00 0.00 2.52
162 163 8.539544 AGTTGGGAAAATCAAGAAAGAAAGAAA 58.460 29.630 0.00 0.00 0.00 2.52
163 164 9.161629 GTTGGGAAAATCAAGAAAGAAAGAAAA 57.838 29.630 0.00 0.00 0.00 2.29
164 165 8.947055 TGGGAAAATCAAGAAAGAAAGAAAAG 57.053 30.769 0.00 0.00 0.00 2.27
165 166 8.757877 TGGGAAAATCAAGAAAGAAAGAAAAGA 58.242 29.630 0.00 0.00 0.00 2.52
166 167 9.599866 GGGAAAATCAAGAAAGAAAGAAAAGAA 57.400 29.630 0.00 0.00 0.00 2.52
171 172 7.573968 TCAAGAAAGAAAGAAAAGAAGAGGG 57.426 36.000 0.00 0.00 0.00 4.30
172 173 6.039829 TCAAGAAAGAAAGAAAAGAAGAGGGC 59.960 38.462 0.00 0.00 0.00 5.19
173 174 5.700183 AGAAAGAAAGAAAAGAAGAGGGCT 58.300 37.500 0.00 0.00 0.00 5.19
174 175 6.132658 AGAAAGAAAGAAAAGAAGAGGGCTT 58.867 36.000 0.00 0.00 36.96 4.35
175 176 6.609212 AGAAAGAAAGAAAAGAAGAGGGCTTT 59.391 34.615 0.00 0.00 37.18 3.51
176 177 7.780271 AGAAAGAAAGAAAAGAAGAGGGCTTTA 59.220 33.333 0.00 0.00 34.68 1.85
177 178 7.898014 AAGAAAGAAAAGAAGAGGGCTTTAA 57.102 32.000 0.00 0.00 34.68 1.52
178 179 7.517614 AGAAAGAAAAGAAGAGGGCTTTAAG 57.482 36.000 0.00 0.00 34.68 1.85
179 180 6.491745 AGAAAGAAAAGAAGAGGGCTTTAAGG 59.508 38.462 0.00 0.00 34.68 2.69
180 181 5.584551 AGAAAAGAAGAGGGCTTTAAGGA 57.415 39.130 0.00 0.00 34.68 3.36
181 182 6.146140 AGAAAAGAAGAGGGCTTTAAGGAT 57.854 37.500 0.00 0.00 34.68 3.24
182 183 7.272144 AGAAAAGAAGAGGGCTTTAAGGATA 57.728 36.000 0.00 0.00 34.68 2.59
183 184 7.699878 AGAAAAGAAGAGGGCTTTAAGGATAA 58.300 34.615 0.00 0.00 34.68 1.75
184 185 8.170730 AGAAAAGAAGAGGGCTTTAAGGATAAA 58.829 33.333 0.00 0.00 34.68 1.40
185 186 8.721133 AAAAGAAGAGGGCTTTAAGGATAAAA 57.279 30.769 0.00 0.00 34.68 1.52
186 187 8.721133 AAAGAAGAGGGCTTTAAGGATAAAAA 57.279 30.769 0.00 0.00 34.05 1.94
204 205 4.364415 AAAAAGTTGTTAGCTCGTTGCA 57.636 36.364 0.00 0.00 45.94 4.08
205 206 4.364415 AAAAGTTGTTAGCTCGTTGCAA 57.636 36.364 0.00 0.00 45.94 4.08
206 207 3.334272 AAGTTGTTAGCTCGTTGCAAC 57.666 42.857 19.89 19.89 45.94 4.17
207 208 2.285083 AGTTGTTAGCTCGTTGCAACA 58.715 42.857 28.01 14.60 45.94 3.33
208 209 2.031683 AGTTGTTAGCTCGTTGCAACAC 59.968 45.455 28.01 17.61 45.94 3.32
209 210 1.657822 TGTTAGCTCGTTGCAACACA 58.342 45.000 28.01 19.85 45.94 3.72
210 211 2.010497 TGTTAGCTCGTTGCAACACAA 58.990 42.857 28.01 12.49 45.94 3.33
211 212 2.031560 TGTTAGCTCGTTGCAACACAAG 59.968 45.455 28.01 21.10 45.94 3.16
212 213 1.225855 TAGCTCGTTGCAACACAAGG 58.774 50.000 28.01 12.25 45.94 3.61
213 214 1.008538 GCTCGTTGCAACACAAGGG 60.009 57.895 28.01 13.44 42.98 3.95
214 215 1.008538 CTCGTTGCAACACAAGGGC 60.009 57.895 28.01 0.00 42.98 5.19
215 216 1.723608 CTCGTTGCAACACAAGGGCA 61.724 55.000 28.01 1.58 42.98 5.36
216 217 1.106351 TCGTTGCAACACAAGGGCAT 61.106 50.000 28.01 0.00 42.98 4.40
217 218 0.249405 CGTTGCAACACAAGGGCATT 60.249 50.000 28.01 0.00 39.50 3.56
218 219 1.805871 CGTTGCAACACAAGGGCATTT 60.806 47.619 28.01 0.00 39.50 2.32
219 220 2.544694 CGTTGCAACACAAGGGCATTTA 60.545 45.455 28.01 0.00 39.50 1.40
220 221 2.799978 GTTGCAACACAAGGGCATTTAC 59.200 45.455 24.52 0.00 39.50 2.01
221 222 2.315176 TGCAACACAAGGGCATTTACT 58.685 42.857 0.00 0.00 31.58 2.24
222 223 2.035704 TGCAACACAAGGGCATTTACTG 59.964 45.455 0.00 0.00 31.58 2.74
223 224 2.610232 GCAACACAAGGGCATTTACTGG 60.610 50.000 0.00 0.00 0.00 4.00
234 235 4.072131 GGCATTTACTGGTCTTCTGTCAA 58.928 43.478 0.00 0.00 0.00 3.18
237 238 6.460953 GGCATTTACTGGTCTTCTGTCAAAAA 60.461 38.462 0.00 0.00 0.00 1.94
277 278 3.090765 CTGCAGGCCTACCCCTTT 58.909 61.111 3.98 0.00 36.11 3.11
424 427 0.849540 CCCTCCCCCAAAACCCTAGT 60.850 60.000 0.00 0.00 0.00 2.57
1119 1122 0.798771 CGCTCAGTTACCTCGACTGC 60.799 60.000 0.00 0.00 43.23 4.40
1149 1152 1.443407 CCGCCTCTCGATGACCAAT 59.557 57.895 0.00 0.00 41.67 3.16
1164 1167 4.197498 AATTCAGCCATGCGCCGC 62.197 61.111 4.18 0.00 38.78 6.53
1270 1273 9.846248 CTTGATAGAGTTACTTTTGAAATTGGG 57.154 33.333 0.00 0.00 0.00 4.12
1285 1288 1.178534 TTGGGGTGTAGCTTTGCTGC 61.179 55.000 0.00 1.36 40.10 5.25
1399 1402 8.236586 TGTTTGTATACTGAAATGCTTGATCAC 58.763 33.333 4.17 0.00 0.00 3.06
1416 1419 2.796557 TCACGCCAATGGGATTTGTTA 58.203 42.857 0.00 0.00 35.59 2.41
1423 1426 4.563374 GCCAATGGGATTTGTTAGTTTGCT 60.563 41.667 0.00 0.00 35.59 3.91
1456 1459 6.151663 TGAATTACATAAGGTAGCTACGCA 57.848 37.500 17.48 5.55 32.49 5.24
1470 1473 4.062293 AGCTACGCAATTAAAGTCACACA 58.938 39.130 0.00 0.00 0.00 3.72
1584 1588 7.524717 ACATATGATATGCCAAAAAGTACCC 57.475 36.000 10.38 0.00 0.00 3.69
1657 1663 3.859386 GGTTTGACACTGCACAGAAAAAG 59.141 43.478 4.31 0.00 0.00 2.27
1667 1673 3.812609 TGCACAGAAAAAGCTTGTATCGA 59.187 39.130 0.00 0.00 0.00 3.59
1707 1713 9.547753 ACTGGATATGTGATATTTGTACTTGAC 57.452 33.333 0.00 0.00 0.00 3.18
1708 1714 9.770097 CTGGATATGTGATATTTGTACTTGACT 57.230 33.333 0.00 0.00 0.00 3.41
1725 1731 3.770046 TGACTACTTGTACCCTACTGCA 58.230 45.455 0.00 0.00 0.00 4.41
1727 1733 4.159693 TGACTACTTGTACCCTACTGCATG 59.840 45.833 0.00 0.00 0.00 4.06
1728 1734 4.094476 ACTACTTGTACCCTACTGCATGT 58.906 43.478 0.00 0.00 0.00 3.21
1729 1735 5.266788 ACTACTTGTACCCTACTGCATGTA 58.733 41.667 0.00 0.00 0.00 2.29
1730 1736 4.467198 ACTTGTACCCTACTGCATGTAC 57.533 45.455 0.00 0.00 35.32 2.90
1731 1737 3.197116 ACTTGTACCCTACTGCATGTACC 59.803 47.826 0.00 0.00 34.15 3.34
1824 1834 7.915923 GCAAGGCCTTTTTCAGTAATATCTAAC 59.084 37.037 17.61 0.00 0.00 2.34
1855 1865 6.611642 AGCTACTGAGGGAGTACATGATTTAA 59.388 38.462 0.00 0.00 35.96 1.52
1961 1971 2.092055 GCCAATCGAACCGCAAAATTTC 59.908 45.455 0.00 0.00 0.00 2.17
1977 1987 7.956943 CGCAAAATTTCACTTTCTTTGAGTTTT 59.043 29.630 0.00 0.00 0.00 2.43
2092 2102 2.364324 GGCCATCATGAATGTGAATGCT 59.636 45.455 0.00 0.00 33.13 3.79
2170 2180 7.065803 TGGCTTAACTCAGACTATGTAAAATGC 59.934 37.037 0.00 0.00 0.00 3.56
2188 2198 1.405463 TGCGTACATGCTACTGGAGAG 59.595 52.381 0.00 0.00 35.36 3.20
2311 2321 6.091713 GCTCATTTCATTTTCTGTTGGATTGG 59.908 38.462 0.00 0.00 0.00 3.16
2350 2360 2.336554 AAATTAGTTGTGCAGCTGCG 57.663 45.000 32.11 0.00 45.83 5.18
2527 2537 8.840321 AGTTATACATAGCACCAATGTCAATTC 58.160 33.333 0.00 0.00 38.49 2.17
2678 2688 9.822727 TTCTCTATTTAAATCTTTTCCTTGGGT 57.177 29.630 3.39 0.00 0.00 4.51
2679 2689 9.822727 TCTCTATTTAAATCTTTTCCTTGGGTT 57.177 29.630 3.39 0.00 0.00 4.11
2720 2743 6.097356 GGGGTTTTGCAACTTAGCTATTTAC 58.903 40.000 0.00 0.00 32.90 2.01
2721 2744 6.071560 GGGGTTTTGCAACTTAGCTATTTACT 60.072 38.462 0.00 0.00 32.90 2.24
2722 2745 7.121611 GGGGTTTTGCAACTTAGCTATTTACTA 59.878 37.037 0.00 0.00 32.90 1.82
2723 2746 7.966753 GGGTTTTGCAACTTAGCTATTTACTAC 59.033 37.037 0.00 0.00 32.90 2.73
2724 2747 8.727910 GGTTTTGCAACTTAGCTATTTACTACT 58.272 33.333 0.00 0.00 32.90 2.57
2725 2748 9.756461 GTTTTGCAACTTAGCTATTTACTACTC 57.244 33.333 0.00 0.00 34.99 2.59
2726 2749 8.488651 TTTGCAACTTAGCTATTTACTACTCC 57.511 34.615 0.00 0.00 34.99 3.85
2727 2750 6.579865 TGCAACTTAGCTATTTACTACTCCC 58.420 40.000 0.00 0.00 34.99 4.30
2728 2751 6.383147 TGCAACTTAGCTATTTACTACTCCCT 59.617 38.462 0.00 0.00 34.99 4.20
2729 2752 6.924612 GCAACTTAGCTATTTACTACTCCCTC 59.075 42.308 0.00 0.00 0.00 4.30
2730 2753 7.435305 CAACTTAGCTATTTACTACTCCCTCC 58.565 42.308 0.00 0.00 0.00 4.30
2731 2754 5.769162 ACTTAGCTATTTACTACTCCCTCCG 59.231 44.000 0.00 0.00 0.00 4.63
2732 2755 4.181799 AGCTATTTACTACTCCCTCCGT 57.818 45.455 0.00 0.00 0.00 4.69
2733 2756 4.143543 AGCTATTTACTACTCCCTCCGTC 58.856 47.826 0.00 0.00 0.00 4.79
2734 2757 3.255395 GCTATTTACTACTCCCTCCGTCC 59.745 52.174 0.00 0.00 0.00 4.79
2735 2758 1.755179 TTTACTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
2736 2759 0.107017 TTACTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
2737 2760 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
2738 2761 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2739 2762 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2740 2763 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2741 2764 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2742 2765 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2743 2766 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2744 2767 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2745 2768 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2746 2769 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2747 2770 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2748 2771 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2749 2772 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2750 2773 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2751 2774 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2752 2775 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2753 2776 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2754 2777 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2755 2778 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2756 2779 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2757 2780 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2758 2781 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2759 2782 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2760 2783 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
2765 2788 7.174107 ACTTGTCATCAAAATGGATAAAGGG 57.826 36.000 0.00 0.00 33.42 3.95
2766 2789 6.155049 ACTTGTCATCAAAATGGATAAAGGGG 59.845 38.462 0.00 0.00 33.42 4.79
2767 2790 4.961730 TGTCATCAAAATGGATAAAGGGGG 59.038 41.667 0.00 0.00 33.42 5.40
2768 2791 5.208121 GTCATCAAAATGGATAAAGGGGGA 58.792 41.667 0.00 0.00 33.42 4.81
2769 2792 5.840693 GTCATCAAAATGGATAAAGGGGGAT 59.159 40.000 0.00 0.00 33.42 3.85
2770 2793 5.840149 TCATCAAAATGGATAAAGGGGGATG 59.160 40.000 0.00 0.00 33.42 3.51
2771 2794 5.219468 TCAAAATGGATAAAGGGGGATGT 57.781 39.130 0.00 0.00 0.00 3.06
2772 2795 6.348478 TCAAAATGGATAAAGGGGGATGTA 57.652 37.500 0.00 0.00 0.00 2.29
2773 2796 6.932753 TCAAAATGGATAAAGGGGGATGTAT 58.067 36.000 0.00 0.00 0.00 2.29
2774 2797 7.010160 TCAAAATGGATAAAGGGGGATGTATC 58.990 38.462 0.00 0.00 0.00 2.24
2775 2798 6.803587 AAATGGATAAAGGGGGATGTATCT 57.196 37.500 0.00 0.00 0.00 1.98
2776 2799 7.905144 AAATGGATAAAGGGGGATGTATCTA 57.095 36.000 0.00 0.00 0.00 1.98
2777 2800 7.516450 AATGGATAAAGGGGGATGTATCTAG 57.484 40.000 0.00 0.00 0.00 2.43
2778 2801 6.241223 TGGATAAAGGGGGATGTATCTAGA 57.759 41.667 0.00 0.00 0.00 2.43
2779 2802 6.826727 TGGATAAAGGGGGATGTATCTAGAT 58.173 40.000 10.73 10.73 0.00 1.98
2780 2803 6.673978 TGGATAAAGGGGGATGTATCTAGATG 59.326 42.308 15.79 0.00 0.00 2.90
2781 2804 6.674419 GGATAAAGGGGGATGTATCTAGATGT 59.326 42.308 15.79 1.25 0.00 3.06
2782 2805 7.844779 GGATAAAGGGGGATGTATCTAGATGTA 59.155 40.741 15.79 4.44 0.00 2.29
2783 2806 9.440761 GATAAAGGGGGATGTATCTAGATGTAT 57.559 37.037 15.79 9.11 0.00 2.29
2784 2807 9.805204 ATAAAGGGGGATGTATCTAGATGTATT 57.195 33.333 15.79 0.00 0.00 1.89
2785 2808 8.525729 AAAGGGGGATGTATCTAGATGTATTT 57.474 34.615 15.79 1.50 0.00 1.40
2786 2809 8.525729 AAGGGGGATGTATCTAGATGTATTTT 57.474 34.615 15.79 0.00 0.00 1.82
2787 2810 9.629649 AAGGGGGATGTATCTAGATGTATTTTA 57.370 33.333 15.79 0.00 0.00 1.52
2788 2811 9.273137 AGGGGGATGTATCTAGATGTATTTTAG 57.727 37.037 15.79 0.00 0.00 1.85
2789 2812 9.047947 GGGGGATGTATCTAGATGTATTTTAGT 57.952 37.037 15.79 0.00 0.00 2.24
2827 2850 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
2835 2858 8.830201 TCCATTTTGATGACAAGTATTTTTGG 57.170 30.769 0.00 0.00 37.32 3.28
2836 2859 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
2837 2860 8.711457 CCATTTTGATGACAAGTATTTTTGGAC 58.289 33.333 0.00 0.00 37.32 4.02
2838 2861 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
2839 2862 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
2840 2863 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
2841 2864 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
2842 2865 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
2843 2866 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
2844 2867 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
2845 2868 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2895 2918 3.128938 CCGTTTGTGTTGTTGGGTTTCTA 59.871 43.478 0.00 0.00 0.00 2.10
3172 3215 7.893302 TGGAACTGATGGAATATTAAGTTTGGT 59.107 33.333 0.00 0.00 0.00 3.67
3232 3277 0.607620 AATGCGTTGATTTGGTGGGG 59.392 50.000 0.00 0.00 0.00 4.96
3235 3280 0.963355 GCGTTGATTTGGTGGGGCTA 60.963 55.000 0.00 0.00 0.00 3.93
3238 3283 2.495669 CGTTGATTTGGTGGGGCTATTT 59.504 45.455 0.00 0.00 0.00 1.40
3267 3312 6.479001 GTGTGATTATGTGTTATCCGCTAACT 59.521 38.462 7.39 0.00 40.40 2.24
3268 3313 6.478673 TGTGATTATGTGTTATCCGCTAACTG 59.521 38.462 7.39 0.00 40.40 3.16
3304 3349 2.095718 GGAGAAATTTCTGTGTCGGTGC 60.096 50.000 25.12 7.25 37.73 5.01
3321 3370 7.758076 GTGTCGGTGCTTGCATATACTATATTA 59.242 37.037 0.00 0.00 0.00 0.98
3492 3544 5.082425 ACCTCAATTGAATGGAAGAGCTTT 58.918 37.500 18.09 0.00 0.00 3.51
3493 3545 5.047519 ACCTCAATTGAATGGAAGAGCTTTG 60.048 40.000 18.09 0.00 0.00 2.77
3500 3553 8.992835 ATTGAATGGAAGAGCTTTGAAATTAC 57.007 30.769 0.00 0.00 0.00 1.89
3508 3561 5.942872 AGAGCTTTGAAATTACGGAACATG 58.057 37.500 0.00 0.00 0.00 3.21
3525 3578 8.798402 ACGGAACATGGTGAATTAAAAGAATTA 58.202 29.630 0.00 0.00 0.00 1.40
3558 3611 2.938838 TGAGAAATTGTTGACCCGGTT 58.061 42.857 0.00 0.00 0.00 4.44
3572 3625 2.750712 ACCCGGTTAAAATTGGATGACG 59.249 45.455 0.00 0.00 0.00 4.35
3665 3719 5.008331 AGAATTGAATGAGAGAGCTTTGCA 58.992 37.500 0.00 0.00 0.00 4.08
3671 3725 5.475909 TGAATGAGAGAGCTTTGCAGAATTT 59.524 36.000 0.00 0.00 0.00 1.82
3755 3809 6.171213 TCTTTAAAACTAGGGAGCTTAGTGC 58.829 40.000 0.00 0.00 43.29 4.40
3807 3861 3.683365 AGTACATGTGCTGTGTCATGA 57.317 42.857 16.23 0.00 42.52 3.07
3844 3898 7.987458 TCCTTCCAGTCACTTATTCATATTCAC 59.013 37.037 0.00 0.00 0.00 3.18
3856 3910 5.878332 TTCATATTCACGCATTTGTGTCT 57.122 34.783 0.00 0.00 40.74 3.41
3877 3931 3.372795 CCGTAATTAGGCAGGCGAA 57.627 52.632 0.00 0.00 0.00 4.70
3878 3932 1.658994 CCGTAATTAGGCAGGCGAAA 58.341 50.000 0.00 0.00 0.00 3.46
3918 3973 4.304110 TCCAGCGAATATTAGTTTAGCCG 58.696 43.478 0.00 0.00 0.00 5.52
3952 4102 8.587608 AGACAATTATTTTCCAACATCATGTGT 58.412 29.630 0.00 0.00 44.84 3.72
3995 4145 4.081087 TGAGTATGTTCTTGGAGCCCTTAC 60.081 45.833 0.00 0.00 0.00 2.34
4032 4214 7.067129 GGTTTCAGGGTATAGATTCACCTTTTC 59.933 40.741 0.00 0.00 35.04 2.29
4035 4217 8.561536 TCAGGGTATAGATTCACCTTTTCATA 57.438 34.615 0.00 0.00 35.04 2.15
4070 4252 5.039333 GGAAATGTGCTGAATGCTGAATAC 58.961 41.667 0.00 0.00 43.37 1.89
4099 4281 3.411446 CCAAGTATGACTGCTTCACCAA 58.589 45.455 0.00 0.00 36.92 3.67
4100 4282 3.820467 CCAAGTATGACTGCTTCACCAAA 59.180 43.478 0.00 0.00 36.92 3.28
4101 4283 4.460382 CCAAGTATGACTGCTTCACCAAAT 59.540 41.667 0.00 0.00 36.92 2.32
4102 4284 5.392380 CCAAGTATGACTGCTTCACCAAATC 60.392 44.000 0.00 0.00 36.92 2.17
4103 4285 4.910195 AGTATGACTGCTTCACCAAATCA 58.090 39.130 0.00 0.00 36.92 2.57
4104 4286 4.697352 AGTATGACTGCTTCACCAAATCAC 59.303 41.667 0.00 0.00 36.92 3.06
4105 4287 2.229792 TGACTGCTTCACCAAATCACC 58.770 47.619 0.00 0.00 0.00 4.02
4106 4288 2.229792 GACTGCTTCACCAAATCACCA 58.770 47.619 0.00 0.00 0.00 4.17
4125 4307 4.666512 ACCAGAGGTGCACATTTTTCTAT 58.333 39.130 20.43 0.00 32.98 1.98
4303 4486 2.424956 GGGATGACAGTTCCATTTGAGC 59.575 50.000 0.00 0.00 34.77 4.26
4390 4573 5.640732 CCATCATTTAACTCCTCGTTTTGG 58.359 41.667 0.00 0.00 37.05 3.28
4578 4761 5.654603 TGTGACCAATGTATACGAGTTCT 57.345 39.130 0.00 0.00 0.00 3.01
4593 4776 0.811281 GTTCTGTAATGGCAGGTGGC 59.189 55.000 0.00 0.00 43.74 5.01
4663 4846 5.796424 AATCTGTTTGGCTGAATTCAACT 57.204 34.783 9.88 0.00 0.00 3.16
4665 4848 5.689383 TCTGTTTGGCTGAATTCAACTAC 57.311 39.130 9.88 8.54 0.00 2.73
4826 5009 5.804979 CACTGGTTTCTTTATATTTTGCCCG 59.195 40.000 0.00 0.00 0.00 6.13
4833 5016 6.431198 TCTTTATATTTTGCCCGTCAGTTC 57.569 37.500 0.00 0.00 0.00 3.01
4855 5038 7.928706 AGTTCTGTATAAATGTGATGTAGGAGC 59.071 37.037 0.00 0.00 0.00 4.70
4884 5067 2.093658 GTGGAGGGTATGTTGTCGTGAT 60.094 50.000 0.00 0.00 0.00 3.06
4889 5072 3.071479 GGGTATGTTGTCGTGATTGTGT 58.929 45.455 0.00 0.00 0.00 3.72
4937 5120 6.688385 CGATATGTTTAACATGCCTTTCAGTG 59.312 38.462 19.55 0.00 39.53 3.66
4949 5132 4.466370 TGCCTTTCAGTGTAGCTACTGTAT 59.534 41.667 23.84 5.30 46.32 2.29
4960 5143 6.206438 GTGTAGCTACTGTATTACTACCTCCC 59.794 46.154 23.84 0.00 33.79 4.30
5020 5203 5.868801 CGTCTTGTATTTTAGAACGGGGTAA 59.131 40.000 0.00 0.00 0.00 2.85
5043 5226 9.771915 GTAATAGTATAGAAAAGCCTACTAGCG 57.228 37.037 0.00 0.00 38.01 4.26
5044 5227 5.708877 AGTATAGAAAAGCCTACTAGCGG 57.291 43.478 0.00 0.00 38.01 5.52
5052 5235 2.814280 GCCTACTAGCGGCATTTAGA 57.186 50.000 16.49 0.00 46.77 2.10
5053 5236 3.107642 GCCTACTAGCGGCATTTAGAA 57.892 47.619 16.49 0.00 46.77 2.10
5054 5237 3.463944 GCCTACTAGCGGCATTTAGAAA 58.536 45.455 16.49 0.00 46.77 2.52
5055 5238 3.875134 GCCTACTAGCGGCATTTAGAAAA 59.125 43.478 16.49 0.00 46.77 2.29
5056 5239 4.260661 GCCTACTAGCGGCATTTAGAAAAC 60.261 45.833 16.49 0.00 46.77 2.43
5057 5240 4.025979 CCTACTAGCGGCATTTAGAAAACG 60.026 45.833 1.45 0.00 0.00 3.60
5058 5241 3.332034 ACTAGCGGCATTTAGAAAACGT 58.668 40.909 1.45 0.00 0.00 3.99
5059 5242 2.894307 AGCGGCATTTAGAAAACGTC 57.106 45.000 1.45 0.00 0.00 4.34
5060 5243 1.127951 AGCGGCATTTAGAAAACGTCG 59.872 47.619 1.45 0.00 0.00 5.12
5061 5244 1.136169 GCGGCATTTAGAAAACGTCGT 60.136 47.619 0.00 0.00 0.00 4.34
5062 5245 2.663606 GCGGCATTTAGAAAACGTCGTT 60.664 45.455 4.40 4.40 0.00 3.85
5063 5246 3.423384 GCGGCATTTAGAAAACGTCGTTA 60.423 43.478 11.70 0.00 0.00 3.18
5064 5247 4.320491 CGGCATTTAGAAAACGTCGTTAG 58.680 43.478 11.70 0.00 0.00 2.34
5065 5248 4.143263 CGGCATTTAGAAAACGTCGTTAGT 60.143 41.667 11.70 2.26 0.00 2.24
5066 5249 5.077424 GGCATTTAGAAAACGTCGTTAGTG 58.923 41.667 11.70 3.67 0.00 2.74
5067 5250 5.077424 GCATTTAGAAAACGTCGTTAGTGG 58.923 41.667 11.70 0.00 0.00 4.00
5068 5251 5.614760 CATTTAGAAAACGTCGTTAGTGGG 58.385 41.667 11.70 0.00 0.00 4.61
5069 5252 2.896745 AGAAAACGTCGTTAGTGGGT 57.103 45.000 11.70 0.00 0.00 4.51
5070 5253 2.476821 AGAAAACGTCGTTAGTGGGTG 58.523 47.619 11.70 0.00 0.00 4.61
5071 5254 0.939419 AAAACGTCGTTAGTGGGTGC 59.061 50.000 11.70 0.00 0.00 5.01
5072 5255 0.105408 AAACGTCGTTAGTGGGTGCT 59.895 50.000 11.70 0.00 0.00 4.40
5073 5256 0.105408 AACGTCGTTAGTGGGTGCTT 59.895 50.000 9.30 0.00 0.00 3.91
5074 5257 0.319297 ACGTCGTTAGTGGGTGCTTC 60.319 55.000 0.00 0.00 0.00 3.86
5075 5258 0.319211 CGTCGTTAGTGGGTGCTTCA 60.319 55.000 0.00 0.00 0.00 3.02
5076 5259 1.429463 GTCGTTAGTGGGTGCTTCAG 58.571 55.000 0.00 0.00 0.00 3.02
5077 5260 0.320421 TCGTTAGTGGGTGCTTCAGC 60.320 55.000 0.00 0.00 42.50 4.26
5085 5268 4.077188 GTGCTTCAGCCGCACGTC 62.077 66.667 0.00 0.00 46.81 4.34
5086 5269 4.600576 TGCTTCAGCCGCACGTCA 62.601 61.111 0.00 0.00 41.18 4.35
5087 5270 4.077188 GCTTCAGCCGCACGTCAC 62.077 66.667 0.00 0.00 34.31 3.67
5088 5271 2.661537 CTTCAGCCGCACGTCACA 60.662 61.111 0.00 0.00 0.00 3.58
5089 5272 2.202946 TTCAGCCGCACGTCACAA 60.203 55.556 0.00 0.00 0.00 3.33
5090 5273 1.568612 CTTCAGCCGCACGTCACAAT 61.569 55.000 0.00 0.00 0.00 2.71
5091 5274 1.163420 TTCAGCCGCACGTCACAATT 61.163 50.000 0.00 0.00 0.00 2.32
5092 5275 0.319986 TCAGCCGCACGTCACAATTA 60.320 50.000 0.00 0.00 0.00 1.40
5093 5276 0.095245 CAGCCGCACGTCACAATTAG 59.905 55.000 0.00 0.00 0.00 1.73
5094 5277 0.320421 AGCCGCACGTCACAATTAGT 60.320 50.000 0.00 0.00 0.00 2.24
5103 5286 1.134487 CACAATTAGTGCACGGGCG 59.866 57.895 12.01 2.99 45.35 6.13
5104 5287 1.302192 ACAATTAGTGCACGGGCGT 60.302 52.632 12.01 3.66 45.35 5.68
5106 5289 2.038269 AATTAGTGCACGGGCGTGG 61.038 57.895 12.01 0.00 45.49 4.94
5122 5305 3.138798 GGCGGCCTGACGAGACTA 61.139 66.667 12.87 0.00 35.47 2.59
5123 5306 2.707849 GGCGGCCTGACGAGACTAA 61.708 63.158 12.87 0.00 35.47 2.24
5124 5307 1.437986 GCGGCCTGACGAGACTAAT 59.562 57.895 0.00 0.00 35.47 1.73
5125 5308 0.666913 GCGGCCTGACGAGACTAATA 59.333 55.000 0.00 0.00 35.47 0.98
5126 5309 1.269998 GCGGCCTGACGAGACTAATAT 59.730 52.381 0.00 0.00 35.47 1.28
5127 5310 2.922758 GCGGCCTGACGAGACTAATATG 60.923 54.545 0.00 0.00 35.47 1.78
5128 5311 2.351835 CGGCCTGACGAGACTAATATGG 60.352 54.545 0.00 0.00 35.47 2.74
5129 5312 2.891580 GGCCTGACGAGACTAATATGGA 59.108 50.000 0.00 0.00 0.00 3.41
5130 5313 3.321111 GGCCTGACGAGACTAATATGGAA 59.679 47.826 0.00 0.00 0.00 3.53
5131 5314 4.551388 GCCTGACGAGACTAATATGGAAG 58.449 47.826 0.00 0.00 0.00 3.46
5132 5315 4.278669 GCCTGACGAGACTAATATGGAAGA 59.721 45.833 0.00 0.00 0.00 2.87
5133 5316 5.047660 GCCTGACGAGACTAATATGGAAGAT 60.048 44.000 0.00 0.00 0.00 2.40
5134 5317 6.385843 CCTGACGAGACTAATATGGAAGATG 58.614 44.000 0.00 0.00 0.00 2.90
5135 5318 5.773575 TGACGAGACTAATATGGAAGATGC 58.226 41.667 0.00 0.00 0.00 3.91
5136 5319 5.536538 TGACGAGACTAATATGGAAGATGCT 59.463 40.000 0.00 0.00 0.00 3.79
5137 5320 6.715264 TGACGAGACTAATATGGAAGATGCTA 59.285 38.462 0.00 0.00 0.00 3.49
5138 5321 7.094592 TGACGAGACTAATATGGAAGATGCTAG 60.095 40.741 0.00 0.00 0.00 3.42
5139 5322 6.717540 ACGAGACTAATATGGAAGATGCTAGT 59.282 38.462 0.00 0.00 0.00 2.57
5140 5323 7.026562 CGAGACTAATATGGAAGATGCTAGTG 58.973 42.308 0.00 0.00 0.00 2.74
5141 5324 7.238486 AGACTAATATGGAAGATGCTAGTGG 57.762 40.000 0.00 0.00 0.00 4.00
5142 5325 6.784969 AGACTAATATGGAAGATGCTAGTGGT 59.215 38.462 0.00 0.00 0.00 4.16
5143 5326 6.763355 ACTAATATGGAAGATGCTAGTGGTG 58.237 40.000 0.00 0.00 0.00 4.17
5144 5327 5.636903 AATATGGAAGATGCTAGTGGTGT 57.363 39.130 0.00 0.00 0.00 4.16
5145 5328 5.636903 ATATGGAAGATGCTAGTGGTGTT 57.363 39.130 0.00 0.00 0.00 3.32
5146 5329 3.334583 TGGAAGATGCTAGTGGTGTTC 57.665 47.619 0.00 0.00 0.00 3.18
5147 5330 2.906389 TGGAAGATGCTAGTGGTGTTCT 59.094 45.455 0.00 0.00 0.00 3.01
5148 5331 3.265791 GGAAGATGCTAGTGGTGTTCTG 58.734 50.000 0.00 0.00 0.00 3.02
5149 5332 3.055819 GGAAGATGCTAGTGGTGTTCTGA 60.056 47.826 0.00 0.00 0.00 3.27
5150 5333 3.883830 AGATGCTAGTGGTGTTCTGAG 57.116 47.619 0.00 0.00 0.00 3.35
5151 5334 2.093764 AGATGCTAGTGGTGTTCTGAGC 60.094 50.000 0.00 0.00 0.00 4.26
5152 5335 1.047801 TGCTAGTGGTGTTCTGAGCA 58.952 50.000 0.00 0.00 37.58 4.26
5153 5336 1.270305 TGCTAGTGGTGTTCTGAGCAC 60.270 52.381 15.27 15.27 43.33 4.40
5157 5340 2.821991 GTGGTGTTCTGAGCACTACT 57.178 50.000 25.91 0.00 42.51 2.57
5158 5341 2.408050 GTGGTGTTCTGAGCACTACTG 58.592 52.381 25.91 0.00 42.51 2.74
5159 5342 2.039418 TGGTGTTCTGAGCACTACTGT 58.961 47.619 21.32 0.00 37.07 3.55
5160 5343 3.005472 GTGGTGTTCTGAGCACTACTGTA 59.995 47.826 25.91 6.19 42.51 2.74
5161 5344 3.639561 TGGTGTTCTGAGCACTACTGTAA 59.360 43.478 21.32 0.43 37.07 2.41
5162 5345 3.988517 GGTGTTCTGAGCACTACTGTAAC 59.011 47.826 21.32 1.86 37.07 2.50
5163 5346 3.988517 GTGTTCTGAGCACTACTGTAACC 59.011 47.826 16.15 0.00 34.30 2.85
5164 5347 3.639561 TGTTCTGAGCACTACTGTAACCA 59.360 43.478 0.00 0.00 0.00 3.67
5165 5348 4.238514 GTTCTGAGCACTACTGTAACCAG 58.761 47.826 0.00 0.00 44.68 4.00
5193 5376 1.546923 TCGGCCGAAATCACTGTTCTA 59.453 47.619 28.99 0.00 0.00 2.10
5218 5401 5.144359 CCTTGTTAGCGTTTATTGTCACAC 58.856 41.667 0.00 0.00 0.00 3.82
5267 5450 6.488683 TCATGATTTGACCCTTTTAGAAACGT 59.511 34.615 0.00 0.00 0.00 3.99
5277 5460 1.474332 TTAGAAACGTCAGGGCCCGT 61.474 55.000 18.44 7.69 39.32 5.28
5296 5479 1.400494 GTGGCGTTTTCAGTCAACACT 59.600 47.619 0.00 0.00 0.00 3.55
5311 5494 0.745128 ACACTGAAACGCCGAACCAA 60.745 50.000 0.00 0.00 0.00 3.67
5315 5498 1.868498 CTGAAACGCCGAACCAACTAA 59.132 47.619 0.00 0.00 0.00 2.24
5390 5573 2.477880 GTTGGAAACGCCGATCCAT 58.522 52.632 15.02 0.00 44.83 3.41
5400 5583 1.583054 GCCGATCCATCTAGCGTTTT 58.417 50.000 0.00 0.00 0.00 2.43
5446 5656 2.046285 GGCTTCCACCCACCATTCG 61.046 63.158 0.00 0.00 0.00 3.34
5459 5673 3.306364 CCACCATTCGTCACTCTCTTCTT 60.306 47.826 0.00 0.00 0.00 2.52
5488 5702 1.402896 CCTATCCCGAGCTCTTGCCA 61.403 60.000 12.85 0.00 40.80 4.92
5543 5757 6.038603 CCTCTCAAATCCTTGCAAATCGATTA 59.961 38.462 11.83 0.00 32.14 1.75
5559 5773 2.419574 CGATTAGGTTGGTCCGTGGATT 60.420 50.000 0.00 0.00 41.99 3.01
5608 5822 5.972107 ACCTCCTTCATCTCACAAATTTG 57.028 39.130 16.67 16.67 0.00 2.32
5660 5875 6.378564 TGATTTGTTCTTGTTGTTCCTAACCA 59.621 34.615 0.00 0.00 0.00 3.67
5808 6025 8.297426 GGGTTATGGCTAATGTTAAGATTTAGC 58.703 37.037 2.84 9.77 44.45 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.059868 ACACATTCGACATGAACGTTGTC 60.060 43.478 5.00 7.21 40.00 3.18
17 18 2.869801 ACACATTCGACATGAACGTTGT 59.130 40.909 5.00 0.00 40.00 3.32
18 19 3.519908 ACACATTCGACATGAACGTTG 57.480 42.857 5.00 9.69 40.00 4.10
19 20 3.807622 AGAACACATTCGACATGAACGTT 59.192 39.130 0.00 0.00 40.00 3.99
20 21 3.390135 AGAACACATTCGACATGAACGT 58.610 40.909 0.00 0.00 40.00 3.99
21 22 4.857037 TCTAGAACACATTCGACATGAACG 59.143 41.667 0.00 5.16 40.00 3.95
22 23 6.706055 TTCTAGAACACATTCGACATGAAC 57.294 37.500 0.00 0.00 40.00 3.18
23 24 7.387673 ACATTTCTAGAACACATTCGACATGAA 59.612 33.333 4.18 0.00 40.04 2.57
24 25 6.873605 ACATTTCTAGAACACATTCGACATGA 59.126 34.615 4.18 0.00 40.04 3.07
25 26 7.065216 ACATTTCTAGAACACATTCGACATG 57.935 36.000 4.18 4.93 40.04 3.21
26 27 7.604164 AGAACATTTCTAGAACACATTCGACAT 59.396 33.333 4.18 0.00 38.49 3.06
27 28 6.929049 AGAACATTTCTAGAACACATTCGACA 59.071 34.615 4.18 0.00 38.49 4.35
28 29 7.352719 AGAACATTTCTAGAACACATTCGAC 57.647 36.000 4.18 0.00 38.49 4.20
29 30 7.148804 CGAAGAACATTTCTAGAACACATTCGA 60.149 37.037 20.74 2.45 39.61 3.71
30 31 6.950428 CGAAGAACATTTCTAGAACACATTCG 59.050 38.462 4.18 12.17 39.61 3.34
31 32 8.018677 TCGAAGAACATTTCTAGAACACATTC 57.981 34.615 4.18 7.17 39.61 2.67
32 33 7.962964 TCGAAGAACATTTCTAGAACACATT 57.037 32.000 4.18 0.00 39.61 2.71
33 34 9.653287 TTATCGAAGAACATTTCTAGAACACAT 57.347 29.630 4.18 0.00 43.58 3.21
34 35 9.483916 TTTATCGAAGAACATTTCTAGAACACA 57.516 29.630 4.18 0.00 43.58 3.72
69 70 9.347240 ACGACCATACTAAAATAGTAAGAGCTA 57.653 33.333 1.70 0.00 43.82 3.32
70 71 8.235359 ACGACCATACTAAAATAGTAAGAGCT 57.765 34.615 1.70 0.00 43.82 4.09
71 72 9.956720 TTACGACCATACTAAAATAGTAAGAGC 57.043 33.333 1.70 0.00 43.82 4.09
97 98 9.559732 TCGGAGTGATATGTGAATTGATAAATT 57.440 29.630 0.00 0.00 0.00 1.82
98 99 9.730705 ATCGGAGTGATATGTGAATTGATAAAT 57.269 29.630 0.00 0.00 34.83 1.40
102 103 8.993121 GTTTATCGGAGTGATATGTGAATTGAT 58.007 33.333 0.00 0.00 39.29 2.57
103 104 7.984617 TGTTTATCGGAGTGATATGTGAATTGA 59.015 33.333 0.00 0.00 39.29 2.57
104 105 8.141835 TGTTTATCGGAGTGATATGTGAATTG 57.858 34.615 0.00 0.00 39.29 2.32
105 106 8.731275 TTGTTTATCGGAGTGATATGTGAATT 57.269 30.769 0.00 0.00 39.29 2.17
106 107 8.908786 ATTGTTTATCGGAGTGATATGTGAAT 57.091 30.769 0.00 0.00 39.29 2.57
107 108 8.731275 AATTGTTTATCGGAGTGATATGTGAA 57.269 30.769 0.00 0.00 39.29 3.18
108 109 8.731275 AAATTGTTTATCGGAGTGATATGTGA 57.269 30.769 0.00 0.00 39.29 3.58
109 110 9.787532 AAAAATTGTTTATCGGAGTGATATGTG 57.212 29.630 0.00 0.00 39.29 3.21
114 115 9.840427 CAACTAAAAATTGTTTATCGGAGTGAT 57.160 29.630 0.00 0.00 41.30 3.06
115 116 8.293867 CCAACTAAAAATTGTTTATCGGAGTGA 58.706 33.333 0.00 0.00 0.00 3.41
116 117 7.540745 CCCAACTAAAAATTGTTTATCGGAGTG 59.459 37.037 0.00 0.00 0.00 3.51
117 118 7.449086 TCCCAACTAAAAATTGTTTATCGGAGT 59.551 33.333 0.00 0.00 0.00 3.85
118 119 7.822658 TCCCAACTAAAAATTGTTTATCGGAG 58.177 34.615 0.00 0.00 0.00 4.63
119 120 7.762588 TCCCAACTAAAAATTGTTTATCGGA 57.237 32.000 0.00 0.00 0.00 4.55
120 121 8.819643 TTTCCCAACTAAAAATTGTTTATCGG 57.180 30.769 0.00 0.00 0.00 4.18
126 127 9.898152 TCTTGATTTTCCCAACTAAAAATTGTT 57.102 25.926 0.00 0.00 35.72 2.83
127 128 9.898152 TTCTTGATTTTCCCAACTAAAAATTGT 57.102 25.926 0.00 0.00 35.72 2.71
133 134 9.816354 CTTTCTTTCTTGATTTTCCCAACTAAA 57.184 29.630 0.00 0.00 0.00 1.85
134 135 9.196139 TCTTTCTTTCTTGATTTTCCCAACTAA 57.804 29.630 0.00 0.00 0.00 2.24
135 136 8.760980 TCTTTCTTTCTTGATTTTCCCAACTA 57.239 30.769 0.00 0.00 0.00 2.24
136 137 7.660030 TCTTTCTTTCTTGATTTTCCCAACT 57.340 32.000 0.00 0.00 0.00 3.16
137 138 8.716646 TTTCTTTCTTTCTTGATTTTCCCAAC 57.283 30.769 0.00 0.00 0.00 3.77
138 139 9.382275 CTTTTCTTTCTTTCTTGATTTTCCCAA 57.618 29.630 0.00 0.00 0.00 4.12
139 140 8.757877 TCTTTTCTTTCTTTCTTGATTTTCCCA 58.242 29.630 0.00 0.00 0.00 4.37
140 141 9.599866 TTCTTTTCTTTCTTTCTTGATTTTCCC 57.400 29.630 0.00 0.00 0.00 3.97
145 146 8.637099 CCCTCTTCTTTTCTTTCTTTCTTGATT 58.363 33.333 0.00 0.00 0.00 2.57
146 147 7.255766 GCCCTCTTCTTTTCTTTCTTTCTTGAT 60.256 37.037 0.00 0.00 0.00 2.57
147 148 6.039829 GCCCTCTTCTTTTCTTTCTTTCTTGA 59.960 38.462 0.00 0.00 0.00 3.02
148 149 6.040278 AGCCCTCTTCTTTTCTTTCTTTCTTG 59.960 38.462 0.00 0.00 0.00 3.02
149 150 6.132658 AGCCCTCTTCTTTTCTTTCTTTCTT 58.867 36.000 0.00 0.00 0.00 2.52
150 151 5.700183 AGCCCTCTTCTTTTCTTTCTTTCT 58.300 37.500 0.00 0.00 0.00 2.52
151 152 6.398234 AAGCCCTCTTCTTTTCTTTCTTTC 57.602 37.500 0.00 0.00 0.00 2.62
152 153 6.798427 AAAGCCCTCTTCTTTTCTTTCTTT 57.202 33.333 0.00 0.00 30.21 2.52
153 154 7.014711 CCTTAAAGCCCTCTTCTTTTCTTTCTT 59.985 37.037 0.00 0.00 35.58 2.52
154 155 6.491745 CCTTAAAGCCCTCTTCTTTTCTTTCT 59.508 38.462 0.00 0.00 35.58 2.52
155 156 6.490381 TCCTTAAAGCCCTCTTCTTTTCTTTC 59.510 38.462 0.00 0.00 35.58 2.62
156 157 6.373759 TCCTTAAAGCCCTCTTCTTTTCTTT 58.626 36.000 0.00 0.00 35.58 2.52
157 158 5.953571 TCCTTAAAGCCCTCTTCTTTTCTT 58.046 37.500 0.00 0.00 35.58 2.52
158 159 5.584551 TCCTTAAAGCCCTCTTCTTTTCT 57.415 39.130 0.00 0.00 35.58 2.52
159 160 7.939784 TTATCCTTAAAGCCCTCTTCTTTTC 57.060 36.000 0.00 0.00 35.58 2.29
160 161 8.721133 TTTTATCCTTAAAGCCCTCTTCTTTT 57.279 30.769 0.00 0.00 35.58 2.27
161 162 8.721133 TTTTTATCCTTAAAGCCCTCTTCTTT 57.279 30.769 0.00 0.00 37.50 2.52
183 184 4.364415 TGCAACGAGCTAACAACTTTTT 57.636 36.364 6.22 0.00 45.94 1.94
184 185 4.102649 GTTGCAACGAGCTAACAACTTTT 58.897 39.130 14.90 0.00 45.94 2.27
185 186 3.127895 TGTTGCAACGAGCTAACAACTTT 59.872 39.130 23.79 0.00 45.94 2.66
186 187 2.680841 TGTTGCAACGAGCTAACAACTT 59.319 40.909 23.79 0.00 45.94 2.66
187 188 2.031683 GTGTTGCAACGAGCTAACAACT 59.968 45.455 23.79 0.00 45.94 3.16
188 189 2.223157 TGTGTTGCAACGAGCTAACAAC 60.223 45.455 23.79 13.44 45.94 3.32
189 190 2.010497 TGTGTTGCAACGAGCTAACAA 58.990 42.857 23.79 0.57 45.94 2.83
190 191 1.657822 TGTGTTGCAACGAGCTAACA 58.342 45.000 23.79 17.77 45.94 2.41
191 192 2.602217 CCTTGTGTTGCAACGAGCTAAC 60.602 50.000 23.79 15.47 45.94 2.34
192 193 1.601903 CCTTGTGTTGCAACGAGCTAA 59.398 47.619 23.79 12.77 45.94 3.09
193 194 1.225855 CCTTGTGTTGCAACGAGCTA 58.774 50.000 23.79 12.43 45.94 3.32
194 195 1.447317 CCCTTGTGTTGCAACGAGCT 61.447 55.000 23.79 0.00 45.94 4.09
195 196 1.008538 CCCTTGTGTTGCAACGAGC 60.009 57.895 23.79 16.43 45.96 5.03
196 197 1.008538 GCCCTTGTGTTGCAACGAG 60.009 57.895 23.79 19.45 32.90 4.18
197 198 1.106351 ATGCCCTTGTGTTGCAACGA 61.106 50.000 23.79 10.87 38.69 3.85
198 199 0.249405 AATGCCCTTGTGTTGCAACG 60.249 50.000 23.79 9.92 38.69 4.10
199 200 1.952193 AAATGCCCTTGTGTTGCAAC 58.048 45.000 22.83 22.83 38.69 4.17
200 201 2.697751 AGTAAATGCCCTTGTGTTGCAA 59.302 40.909 0.00 0.00 38.69 4.08
201 202 2.035704 CAGTAAATGCCCTTGTGTTGCA 59.964 45.455 0.00 0.00 39.68 4.08
202 203 2.610232 CCAGTAAATGCCCTTGTGTTGC 60.610 50.000 0.00 0.00 0.00 4.17
203 204 2.627699 ACCAGTAAATGCCCTTGTGTTG 59.372 45.455 0.00 0.00 0.00 3.33
204 205 2.890945 GACCAGTAAATGCCCTTGTGTT 59.109 45.455 0.00 0.00 0.00 3.32
205 206 2.108250 AGACCAGTAAATGCCCTTGTGT 59.892 45.455 0.00 0.00 0.00 3.72
206 207 2.795329 AGACCAGTAAATGCCCTTGTG 58.205 47.619 0.00 0.00 0.00 3.33
207 208 3.074538 AGAAGACCAGTAAATGCCCTTGT 59.925 43.478 0.00 0.00 0.00 3.16
208 209 3.441572 CAGAAGACCAGTAAATGCCCTTG 59.558 47.826 0.00 0.00 0.00 3.61
209 210 3.074538 ACAGAAGACCAGTAAATGCCCTT 59.925 43.478 0.00 0.00 0.00 3.95
210 211 2.644798 ACAGAAGACCAGTAAATGCCCT 59.355 45.455 0.00 0.00 0.00 5.19
211 212 3.010420 GACAGAAGACCAGTAAATGCCC 58.990 50.000 0.00 0.00 0.00 5.36
212 213 3.674997 TGACAGAAGACCAGTAAATGCC 58.325 45.455 0.00 0.00 0.00 4.40
213 214 5.689383 TTTGACAGAAGACCAGTAAATGC 57.311 39.130 0.00 0.00 0.00 3.56
214 215 7.707104 ACTTTTTGACAGAAGACCAGTAAATG 58.293 34.615 7.43 0.00 0.00 2.32
215 216 7.556275 TGACTTTTTGACAGAAGACCAGTAAAT 59.444 33.333 7.43 0.00 0.00 1.40
216 217 6.882140 TGACTTTTTGACAGAAGACCAGTAAA 59.118 34.615 7.43 0.00 0.00 2.01
217 218 6.411376 TGACTTTTTGACAGAAGACCAGTAA 58.589 36.000 7.43 0.00 0.00 2.24
218 219 5.984725 TGACTTTTTGACAGAAGACCAGTA 58.015 37.500 7.43 0.00 0.00 2.74
219 220 4.843728 TGACTTTTTGACAGAAGACCAGT 58.156 39.130 7.43 0.00 0.00 4.00
220 221 5.818136 TTGACTTTTTGACAGAAGACCAG 57.182 39.130 7.43 0.00 0.00 4.00
221 222 6.015856 TGTTTTGACTTTTTGACAGAAGACCA 60.016 34.615 7.43 3.47 0.00 4.02
222 223 6.386654 TGTTTTGACTTTTTGACAGAAGACC 58.613 36.000 7.43 1.53 0.00 3.85
223 224 7.061094 CACTGTTTTGACTTTTTGACAGAAGAC 59.939 37.037 8.15 3.08 38.23 3.01
234 235 5.936956 TGCCAAAATCACTGTTTTGACTTTT 59.063 32.000 12.26 0.00 46.78 2.27
237 238 4.685924 CTGCCAAAATCACTGTTTTGACT 58.314 39.130 12.26 0.00 46.78 3.41
424 427 0.914417 ATGGGGAAGGAGGAGCGAAA 60.914 55.000 0.00 0.00 0.00 3.46
426 429 2.066393 CATGGGGAAGGAGGAGCGA 61.066 63.158 0.00 0.00 0.00 4.93
942 945 3.114616 CCACAGGAAGCGCAGACG 61.115 66.667 11.47 0.00 44.07 4.18
943 946 1.598130 AACCACAGGAAGCGCAGAC 60.598 57.895 11.47 0.00 0.00 3.51
944 947 1.597854 CAACCACAGGAAGCGCAGA 60.598 57.895 11.47 0.00 0.00 4.26
1107 1110 0.815734 GGCTAGTGCAGTCGAGGTAA 59.184 55.000 0.00 0.00 41.91 2.85
1119 1122 3.465403 AGGCGGCAGAGGCTAGTG 61.465 66.667 13.08 0.00 45.66 2.74
1259 1262 4.742138 GCAAAGCTACACCCCAATTTCAAA 60.742 41.667 0.00 0.00 0.00 2.69
1265 1268 1.549203 CAGCAAAGCTACACCCCAAT 58.451 50.000 0.00 0.00 36.40 3.16
1270 1273 1.303643 AGGGCAGCAAAGCTACACC 60.304 57.895 0.00 0.00 36.40 4.16
1285 1288 7.342026 ACCTAAATGGAAGTAAAATTAGCAGGG 59.658 37.037 0.00 0.00 39.71 4.45
1390 1393 1.031571 TCCCATTGGCGTGATCAAGC 61.032 55.000 23.40 23.40 35.05 4.01
1399 1402 3.866883 AACTAACAAATCCCATTGGCG 57.133 42.857 0.00 0.00 34.56 5.69
1416 1419 2.978156 TCAATCCCTCCAAGCAAACT 57.022 45.000 0.00 0.00 0.00 2.66
1423 1426 6.980577 ACCTTATGTAATTCAATCCCTCCAA 58.019 36.000 0.00 0.00 0.00 3.53
1456 1459 7.094377 ACAAAGTGTGTCTGTGTGACTTTAATT 60.094 33.333 0.00 0.00 42.46 1.40
1470 1473 3.668447 CATCTAGCCACAAAGTGTGTCT 58.332 45.455 7.55 2.59 46.45 3.41
1489 1492 5.104374 CAGTTGATTAAAAATGGAGCGCAT 58.896 37.500 11.47 0.00 0.00 4.73
1584 1588 5.286082 CAGGAACGTTTTGAAAGTGAAACAG 59.714 40.000 0.46 0.00 41.43 3.16
1657 1663 5.914085 AGACTGCATATTTCGATACAAGC 57.086 39.130 0.00 0.00 0.00 4.01
1667 1673 8.432013 TCACATATCCAGTTAGACTGCATATTT 58.568 33.333 2.54 0.00 36.45 1.40
1706 1712 4.094476 ACATGCAGTAGGGTACAAGTAGT 58.906 43.478 0.00 0.00 0.00 2.73
1707 1713 4.737855 ACATGCAGTAGGGTACAAGTAG 57.262 45.455 0.00 0.00 0.00 2.57
1708 1714 4.403432 GGTACATGCAGTAGGGTACAAGTA 59.597 45.833 13.65 0.00 38.23 2.24
1709 1715 3.197116 GGTACATGCAGTAGGGTACAAGT 59.803 47.826 13.65 0.00 38.23 3.16
1710 1716 3.451178 AGGTACATGCAGTAGGGTACAAG 59.549 47.826 13.65 0.00 38.23 3.16
1711 1717 3.446968 AGGTACATGCAGTAGGGTACAA 58.553 45.455 13.65 0.00 38.23 2.41
1712 1718 3.110293 AGGTACATGCAGTAGGGTACA 57.890 47.619 13.65 0.00 38.23 2.90
1713 1719 4.482952 AAAGGTACATGCAGTAGGGTAC 57.517 45.455 0.00 0.00 36.30 3.34
1824 1834 1.546476 ACTCCCTCAGTAGCTGTTTCG 59.454 52.381 0.00 0.00 31.37 3.46
1977 1987 6.139679 ACAAGGGAGAGGTTGATTTATGAA 57.860 37.500 0.00 0.00 0.00 2.57
2092 2102 9.040259 CCTTCCCTGATGATATTATAGAACTCA 57.960 37.037 0.00 0.00 0.00 3.41
2170 2180 1.678627 AGCTCTCCAGTAGCATGTACG 59.321 52.381 0.00 0.00 42.62 3.67
2188 2198 7.683437 AGTCTAAACATACCCTGTAAAAAGC 57.317 36.000 0.00 0.00 36.98 3.51
2311 2321 2.307934 AAGCTTTCTCGATCTCTGCC 57.692 50.000 0.00 0.00 0.00 4.85
2350 2360 8.577296 TCTGCAGTAACTTATCCATATGTCTAC 58.423 37.037 14.67 0.00 0.00 2.59
2404 2414 5.938125 TCTTTACCAAAGTGCTTCTGGTATC 59.062 40.000 17.87 0.00 43.49 2.24
2527 2537 5.416639 TGGAAATGAATGTTGGAGATGAGTG 59.583 40.000 0.00 0.00 0.00 3.51
2675 2685 4.911390 CCAATGACTGGGAGATATAACCC 58.089 47.826 9.12 9.12 42.17 4.11
2720 2743 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
2721 2744 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2722 2745 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2723 2746 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2724 2747 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2725 2748 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2726 2749 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2727 2750 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2728 2751 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2729 2752 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2730 2753 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2731 2754 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2732 2755 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2733 2756 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2734 2757 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2739 2762 8.917088 CCCTTTATCCATTTTGATGACAAGTAT 58.083 33.333 0.00 0.00 37.32 2.12
2740 2763 7.341769 CCCCTTTATCCATTTTGATGACAAGTA 59.658 37.037 0.00 0.00 37.32 2.24
2741 2764 6.155049 CCCCTTTATCCATTTTGATGACAAGT 59.845 38.462 0.00 0.00 37.32 3.16
2742 2765 6.407299 CCCCCTTTATCCATTTTGATGACAAG 60.407 42.308 0.00 0.00 37.32 3.16
2743 2766 5.424895 CCCCCTTTATCCATTTTGATGACAA 59.575 40.000 0.00 0.00 0.00 3.18
2744 2767 4.961730 CCCCCTTTATCCATTTTGATGACA 59.038 41.667 0.00 0.00 0.00 3.58
2745 2768 5.208121 TCCCCCTTTATCCATTTTGATGAC 58.792 41.667 0.00 0.00 0.00 3.06
2746 2769 5.480058 TCCCCCTTTATCCATTTTGATGA 57.520 39.130 0.00 0.00 0.00 2.92
2747 2770 5.603813 ACATCCCCCTTTATCCATTTTGATG 59.396 40.000 0.00 0.00 33.80 3.07
2748 2771 5.791749 ACATCCCCCTTTATCCATTTTGAT 58.208 37.500 0.00 0.00 0.00 2.57
2749 2772 5.219468 ACATCCCCCTTTATCCATTTTGA 57.781 39.130 0.00 0.00 0.00 2.69
2750 2773 7.012607 AGATACATCCCCCTTTATCCATTTTG 58.987 38.462 0.00 0.00 0.00 2.44
2751 2774 7.179460 AGATACATCCCCCTTTATCCATTTT 57.821 36.000 0.00 0.00 0.00 1.82
2752 2775 6.803587 AGATACATCCCCCTTTATCCATTT 57.196 37.500 0.00 0.00 0.00 2.32
2753 2776 7.263901 TCTAGATACATCCCCCTTTATCCATT 58.736 38.462 0.00 0.00 0.00 3.16
2754 2777 6.826727 TCTAGATACATCCCCCTTTATCCAT 58.173 40.000 0.00 0.00 0.00 3.41
2755 2778 6.241223 TCTAGATACATCCCCCTTTATCCA 57.759 41.667 0.00 0.00 0.00 3.41
2756 2779 6.674419 ACATCTAGATACATCCCCCTTTATCC 59.326 42.308 4.54 0.00 0.00 2.59
2757 2780 7.741554 ACATCTAGATACATCCCCCTTTATC 57.258 40.000 4.54 0.00 0.00 1.75
2758 2781 9.805204 AATACATCTAGATACATCCCCCTTTAT 57.195 33.333 4.54 0.00 0.00 1.40
2759 2782 9.629649 AAATACATCTAGATACATCCCCCTTTA 57.370 33.333 4.54 0.00 0.00 1.85
2760 2783 8.525729 AAATACATCTAGATACATCCCCCTTT 57.474 34.615 4.54 0.00 0.00 3.11
2761 2784 8.525729 AAAATACATCTAGATACATCCCCCTT 57.474 34.615 4.54 0.00 0.00 3.95
2762 2785 9.273137 CTAAAATACATCTAGATACATCCCCCT 57.727 37.037 4.54 0.00 0.00 4.79
2763 2786 9.047947 ACTAAAATACATCTAGATACATCCCCC 57.952 37.037 4.54 0.00 0.00 5.40
2801 2824 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
2809 2832 9.439500 CCAAAAATACTTGTCATCAAAATGGAT 57.561 29.630 0.00 0.00 33.42 3.41
2810 2833 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
2811 2834 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
2812 2835 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
2813 2836 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
2814 2837 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
2815 2838 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
2816 2839 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
2817 2840 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
2818 2841 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
2819 2842 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
2820 2843 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
2821 2844 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
2822 2845 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
2823 2846 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
2824 2847 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
2825 2848 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
2826 2849 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
2827 2850 4.355549 TCTACTCCCTCCGTCCAAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
2828 2851 3.178865 TCTACTCCCTCCGTCCAAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
2829 2852 2.612000 TCTACTCCCTCCGTCCAAAAA 58.388 47.619 0.00 0.00 0.00 1.94
2830 2853 2.314071 TCTACTCCCTCCGTCCAAAA 57.686 50.000 0.00 0.00 0.00 2.44
2831 2854 2.176889 CTTCTACTCCCTCCGTCCAAA 58.823 52.381 0.00 0.00 0.00 3.28
2832 2855 1.618888 CCTTCTACTCCCTCCGTCCAA 60.619 57.143 0.00 0.00 0.00 3.53
2833 2856 0.033405 CCTTCTACTCCCTCCGTCCA 60.033 60.000 0.00 0.00 0.00 4.02
2834 2857 0.756070 CCCTTCTACTCCCTCCGTCC 60.756 65.000 0.00 0.00 0.00 4.79
2835 2858 0.033306 ACCCTTCTACTCCCTCCGTC 60.033 60.000 0.00 0.00 0.00 4.79
2836 2859 0.412640 AACCCTTCTACTCCCTCCGT 59.587 55.000 0.00 0.00 0.00 4.69
2837 2860 0.824759 CAACCCTTCTACTCCCTCCG 59.175 60.000 0.00 0.00 0.00 4.63
2838 2861 1.205055 CCAACCCTTCTACTCCCTCC 58.795 60.000 0.00 0.00 0.00 4.30
2839 2862 1.205055 CCCAACCCTTCTACTCCCTC 58.795 60.000 0.00 0.00 0.00 4.30
2840 2863 0.914902 GCCCAACCCTTCTACTCCCT 60.915 60.000 0.00 0.00 0.00 4.20
2841 2864 1.608154 GCCCAACCCTTCTACTCCC 59.392 63.158 0.00 0.00 0.00 4.30
2842 2865 1.221021 CGCCCAACCCTTCTACTCC 59.779 63.158 0.00 0.00 0.00 3.85
2843 2866 1.449778 GCGCCCAACCCTTCTACTC 60.450 63.158 0.00 0.00 0.00 2.59
2844 2867 2.669240 GCGCCCAACCCTTCTACT 59.331 61.111 0.00 0.00 0.00 2.57
2845 2868 2.818274 CGCGCCCAACCCTTCTAC 60.818 66.667 0.00 0.00 0.00 2.59
3164 3207 3.572661 TCTCCCCTACCTACCAAACTT 57.427 47.619 0.00 0.00 0.00 2.66
3172 3215 4.920749 ACACTCTATCATCTCCCCTACCTA 59.079 45.833 0.00 0.00 0.00 3.08
3204 3248 9.474920 CCACCAAATCAACGCATTATAAATAAT 57.525 29.630 0.00 0.00 33.44 1.28
3232 3277 6.194796 ACACATAATCACACCACAAATAGC 57.805 37.500 0.00 0.00 0.00 2.97
3235 3280 7.415095 CGGATAACACATAATCACACCACAAAT 60.415 37.037 0.00 0.00 0.00 2.32
3238 3283 4.873259 CGGATAACACATAATCACACCACA 59.127 41.667 0.00 0.00 0.00 4.17
3321 3370 5.118990 GTCACCATGTGATATTGTAGCACT 58.881 41.667 6.87 0.00 44.63 4.40
3483 3535 5.997385 TGTTCCGTAATTTCAAAGCTCTTC 58.003 37.500 0.00 0.00 0.00 2.87
3492 3544 6.582677 AATTCACCATGTTCCGTAATTTCA 57.417 33.333 0.00 0.00 0.00 2.69
3493 3545 8.973835 TTTAATTCACCATGTTCCGTAATTTC 57.026 30.769 0.00 0.00 0.00 2.17
3500 3553 9.632807 TTAATTCTTTTAATTCACCATGTTCCG 57.367 29.630 0.00 0.00 0.00 4.30
3525 3578 5.082425 ACAATTTCTCAAGCTCTCCCATTT 58.918 37.500 0.00 0.00 0.00 2.32
3558 3611 9.868277 AATTTAGAATTGCGTCATCCAATTTTA 57.132 25.926 1.49 0.00 41.52 1.52
3705 3759 6.769822 GCCTAGATTCAATTGAGATCTCCAAA 59.230 38.462 24.18 9.01 0.00 3.28
3713 3767 9.739276 TTTTAAAGAGCCTAGATTCAATTGAGA 57.261 29.630 8.41 0.72 0.00 3.27
3725 3779 5.129650 AGCTCCCTAGTTTTAAAGAGCCTAG 59.870 44.000 16.79 11.34 46.14 3.02
3727 3781 3.847184 AGCTCCCTAGTTTTAAAGAGCCT 59.153 43.478 16.79 6.29 46.14 4.58
3844 3898 0.515127 TACGGCAAGACACAAATGCG 59.485 50.000 0.00 0.00 40.94 4.73
3874 3928 5.569059 GGAATGTGCAGTTTAATCACTTTCG 59.431 40.000 11.42 0.00 41.64 3.46
3877 3931 5.565439 GCTGGAATGTGCAGTTTAATCACTT 60.565 40.000 0.00 0.00 38.17 3.16
3878 3932 4.082571 GCTGGAATGTGCAGTTTAATCACT 60.083 41.667 0.00 0.00 38.17 3.41
3918 3973 8.243426 TGTTGGAAAATAATTGTCTAGCATGAC 58.757 33.333 0.00 2.66 37.47 3.06
3995 4145 3.486383 ACCCTGAAACCACTACAATGTG 58.514 45.455 0.00 0.00 37.66 3.21
4032 4214 9.027129 CAGCACATTTCCAATTCAAACTATATG 57.973 33.333 0.00 0.00 0.00 1.78
4035 4217 7.230849 TCAGCACATTTCCAATTCAAACTAT 57.769 32.000 0.00 0.00 0.00 2.12
4070 4252 2.855180 CAGTCATACTTGGCGCAAAAG 58.145 47.619 17.64 17.64 30.85 2.27
4102 4284 7.961731 ACATAGAAAAATGTGCACCTCTGGTG 61.962 42.308 15.69 12.00 43.01 4.17
4103 4285 2.949447 AGAAAAATGTGCACCTCTGGT 58.051 42.857 15.69 0.00 35.62 4.00
4104 4286 4.460382 ACATAGAAAAATGTGCACCTCTGG 59.540 41.667 15.69 7.81 38.65 3.86
4105 4287 5.633830 ACATAGAAAAATGTGCACCTCTG 57.366 39.130 15.69 8.21 38.65 3.35
4106 4288 7.112122 TCATACATAGAAAAATGTGCACCTCT 58.888 34.615 15.69 10.51 40.29 3.69
4125 4307 3.009026 ACGCAACATCAGCAATCATACA 58.991 40.909 0.00 0.00 0.00 2.29
4303 4486 9.880157 AATGACAAGAAAAATTATCCAGGATTG 57.120 29.630 7.44 0.00 0.00 2.67
4390 4573 4.095334 TGTTCATCACTGCATTGTATCTGC 59.905 41.667 3.77 0.00 40.10 4.26
4578 4761 2.585330 CATATGCCACCTGCCATTACA 58.415 47.619 0.00 0.00 40.16 2.41
4631 4814 1.745087 CCAAACAGATTATGTGGCGCT 59.255 47.619 7.64 0.00 43.00 5.92
4663 4846 5.759506 TTTCTTGCGGATGAAACTTTGTA 57.240 34.783 12.89 0.00 0.00 2.41
4665 4848 5.043248 AGTTTTCTTGCGGATGAAACTTTG 58.957 37.500 15.88 0.00 32.72 2.77
4748 4931 3.409026 AGAAAAGCTCTCCACGAACAT 57.591 42.857 0.00 0.00 0.00 2.71
4826 5009 9.035607 CCTACATCACATTTATACAGAACTGAC 57.964 37.037 8.87 0.00 0.00 3.51
4833 5016 7.436933 TGAGCTCCTACATCACATTTATACAG 58.563 38.462 12.15 0.00 0.00 2.74
4855 5038 4.194640 CAACATACCCTCCACAATCTGAG 58.805 47.826 0.00 0.00 0.00 3.35
4884 5067 0.541392 AGTCAGTCACAGCCACACAA 59.459 50.000 0.00 0.00 0.00 3.33
4889 5072 1.069204 GAGACAAGTCAGTCACAGCCA 59.931 52.381 2.72 0.00 40.98 4.75
4937 5120 6.541907 AGGGAGGTAGTAATACAGTAGCTAC 58.458 44.000 16.43 16.43 40.27 3.58
5020 5203 7.393841 CCGCTAGTAGGCTTTTCTATACTAT 57.606 40.000 0.00 0.00 32.02 2.12
5042 5225 2.867456 ACGACGTTTTCTAAATGCCG 57.133 45.000 0.00 0.00 0.00 5.69
5043 5226 5.077424 CACTAACGACGTTTTCTAAATGCC 58.923 41.667 19.71 0.00 0.00 4.40
5044 5227 5.077424 CCACTAACGACGTTTTCTAAATGC 58.923 41.667 19.71 0.00 0.00 3.56
5045 5228 5.178067 ACCCACTAACGACGTTTTCTAAATG 59.822 40.000 19.71 0.00 0.00 2.32
5046 5229 5.178067 CACCCACTAACGACGTTTTCTAAAT 59.822 40.000 19.71 0.00 0.00 1.40
5047 5230 4.507388 CACCCACTAACGACGTTTTCTAAA 59.493 41.667 19.71 0.00 0.00 1.85
5048 5231 4.050553 CACCCACTAACGACGTTTTCTAA 58.949 43.478 19.71 0.00 0.00 2.10
5049 5232 3.641648 CACCCACTAACGACGTTTTCTA 58.358 45.455 19.71 0.00 0.00 2.10
5050 5233 2.476821 CACCCACTAACGACGTTTTCT 58.523 47.619 19.71 0.00 0.00 2.52
5051 5234 1.070376 GCACCCACTAACGACGTTTTC 60.070 52.381 19.71 0.00 0.00 2.29
5052 5235 0.939419 GCACCCACTAACGACGTTTT 59.061 50.000 19.71 3.53 0.00 2.43
5053 5236 0.105408 AGCACCCACTAACGACGTTT 59.895 50.000 19.71 0.00 0.00 3.60
5054 5237 0.105408 AAGCACCCACTAACGACGTT 59.895 50.000 18.47 18.47 0.00 3.99
5055 5238 0.319297 GAAGCACCCACTAACGACGT 60.319 55.000 0.00 0.00 0.00 4.34
5056 5239 0.319211 TGAAGCACCCACTAACGACG 60.319 55.000 0.00 0.00 0.00 5.12
5057 5240 1.429463 CTGAAGCACCCACTAACGAC 58.571 55.000 0.00 0.00 0.00 4.34
5058 5241 0.320421 GCTGAAGCACCCACTAACGA 60.320 55.000 0.00 0.00 41.59 3.85
5059 5242 1.298859 GGCTGAAGCACCCACTAACG 61.299 60.000 4.43 0.00 44.36 3.18
5060 5243 1.298859 CGGCTGAAGCACCCACTAAC 61.299 60.000 4.43 0.00 44.36 2.34
5061 5244 1.003839 CGGCTGAAGCACCCACTAA 60.004 57.895 4.43 0.00 44.36 2.24
5062 5245 2.662596 CGGCTGAAGCACCCACTA 59.337 61.111 4.43 0.00 44.36 2.74
5069 5252 4.600576 TGACGTGCGGCTGAAGCA 62.601 61.111 4.43 0.00 44.36 3.91
5070 5253 4.077188 GTGACGTGCGGCTGAAGC 62.077 66.667 0.00 0.00 41.14 3.86
5071 5254 1.568612 ATTGTGACGTGCGGCTGAAG 61.569 55.000 0.00 0.00 0.00 3.02
5072 5255 1.163420 AATTGTGACGTGCGGCTGAA 61.163 50.000 0.00 0.00 0.00 3.02
5073 5256 0.319986 TAATTGTGACGTGCGGCTGA 60.320 50.000 0.00 0.00 0.00 4.26
5074 5257 0.095245 CTAATTGTGACGTGCGGCTG 59.905 55.000 0.00 0.00 0.00 4.85
5075 5258 0.320421 ACTAATTGTGACGTGCGGCT 60.320 50.000 0.00 0.00 0.00 5.52
5076 5259 2.159181 ACTAATTGTGACGTGCGGC 58.841 52.632 0.00 0.00 0.00 6.53
5086 5269 1.302192 ACGCCCGTGCACTAATTGT 60.302 52.632 16.19 4.07 37.32 2.71
5087 5270 1.134487 CACGCCCGTGCACTAATTG 59.866 57.895 16.19 3.41 39.39 2.32
5088 5271 2.038269 CCACGCCCGTGCACTAATT 61.038 57.895 16.19 0.00 44.16 1.40
5089 5272 2.435938 CCACGCCCGTGCACTAAT 60.436 61.111 16.19 0.00 44.16 1.73
5104 5287 3.931190 TAGTCTCGTCAGGCCGCCA 62.931 63.158 13.15 0.00 0.00 5.69
5105 5288 2.017559 ATTAGTCTCGTCAGGCCGCC 62.018 60.000 0.00 0.00 0.00 6.13
5106 5289 0.666913 TATTAGTCTCGTCAGGCCGC 59.333 55.000 0.00 0.00 0.00 6.53
5107 5290 2.351835 CCATATTAGTCTCGTCAGGCCG 60.352 54.545 0.00 0.00 0.00 6.13
5108 5291 2.891580 TCCATATTAGTCTCGTCAGGCC 59.108 50.000 0.00 0.00 0.00 5.19
5109 5292 4.278669 TCTTCCATATTAGTCTCGTCAGGC 59.721 45.833 0.00 0.00 0.00 4.85
5110 5293 6.385843 CATCTTCCATATTAGTCTCGTCAGG 58.614 44.000 0.00 0.00 0.00 3.86
5111 5294 5.861251 GCATCTTCCATATTAGTCTCGTCAG 59.139 44.000 0.00 0.00 0.00 3.51
5112 5295 5.536538 AGCATCTTCCATATTAGTCTCGTCA 59.463 40.000 0.00 0.00 0.00 4.35
5113 5296 6.019779 AGCATCTTCCATATTAGTCTCGTC 57.980 41.667 0.00 0.00 0.00 4.20
5114 5297 6.717540 ACTAGCATCTTCCATATTAGTCTCGT 59.282 38.462 0.00 0.00 0.00 4.18
5115 5298 7.026562 CACTAGCATCTTCCATATTAGTCTCG 58.973 42.308 0.00 0.00 0.00 4.04
5116 5299 7.039363 ACCACTAGCATCTTCCATATTAGTCTC 60.039 40.741 0.00 0.00 0.00 3.36
5117 5300 6.784969 ACCACTAGCATCTTCCATATTAGTCT 59.215 38.462 0.00 0.00 0.00 3.24
5118 5301 6.870965 CACCACTAGCATCTTCCATATTAGTC 59.129 42.308 0.00 0.00 0.00 2.59
5119 5302 6.327626 ACACCACTAGCATCTTCCATATTAGT 59.672 38.462 0.00 0.00 0.00 2.24
5120 5303 6.763355 ACACCACTAGCATCTTCCATATTAG 58.237 40.000 0.00 0.00 0.00 1.73
5121 5304 6.747414 ACACCACTAGCATCTTCCATATTA 57.253 37.500 0.00 0.00 0.00 0.98
5122 5305 5.636903 ACACCACTAGCATCTTCCATATT 57.363 39.130 0.00 0.00 0.00 1.28
5123 5306 5.367937 AGAACACCACTAGCATCTTCCATAT 59.632 40.000 0.00 0.00 0.00 1.78
5124 5307 4.716784 AGAACACCACTAGCATCTTCCATA 59.283 41.667 0.00 0.00 0.00 2.74
5125 5308 3.521126 AGAACACCACTAGCATCTTCCAT 59.479 43.478 0.00 0.00 0.00 3.41
5126 5309 2.906389 AGAACACCACTAGCATCTTCCA 59.094 45.455 0.00 0.00 0.00 3.53
5127 5310 3.055819 TCAGAACACCACTAGCATCTTCC 60.056 47.826 0.00 0.00 0.00 3.46
5128 5311 4.180057 CTCAGAACACCACTAGCATCTTC 58.820 47.826 0.00 0.00 0.00 2.87
5129 5312 3.618507 GCTCAGAACACCACTAGCATCTT 60.619 47.826 0.00 0.00 0.00 2.40
5130 5313 2.093764 GCTCAGAACACCACTAGCATCT 60.094 50.000 0.00 0.00 0.00 2.90
5131 5314 2.275318 GCTCAGAACACCACTAGCATC 58.725 52.381 0.00 0.00 0.00 3.91
5132 5315 1.625315 TGCTCAGAACACCACTAGCAT 59.375 47.619 0.00 0.00 35.20 3.79
5133 5316 1.047801 TGCTCAGAACACCACTAGCA 58.952 50.000 0.00 0.00 37.62 3.49
5134 5317 1.001406 AGTGCTCAGAACACCACTAGC 59.999 52.381 0.00 0.00 38.87 3.42
5135 5318 3.508012 AGTAGTGCTCAGAACACCACTAG 59.492 47.826 3.48 0.00 38.06 2.57
5136 5319 3.255888 CAGTAGTGCTCAGAACACCACTA 59.744 47.826 4.92 1.52 37.81 2.74
5137 5320 2.036475 CAGTAGTGCTCAGAACACCACT 59.964 50.000 0.00 0.00 40.00 4.00
5138 5321 2.224066 ACAGTAGTGCTCAGAACACCAC 60.224 50.000 0.00 0.00 38.87 4.16
5139 5322 2.039418 ACAGTAGTGCTCAGAACACCA 58.961 47.619 0.00 0.00 38.87 4.17
5140 5323 2.821991 ACAGTAGTGCTCAGAACACC 57.178 50.000 0.00 0.00 38.87 4.16
5141 5324 3.988517 GGTTACAGTAGTGCTCAGAACAC 59.011 47.826 0.00 0.00 38.35 3.32
5142 5325 3.639561 TGGTTACAGTAGTGCTCAGAACA 59.360 43.478 0.00 0.00 0.00 3.18
5143 5326 4.238514 CTGGTTACAGTAGTGCTCAGAAC 58.761 47.826 0.00 0.00 39.92 3.01
5144 5327 4.521130 CTGGTTACAGTAGTGCTCAGAA 57.479 45.455 0.00 0.00 39.92 3.02
5157 5340 1.843368 CCGAGGGAGTACTGGTTACA 58.157 55.000 0.00 0.00 32.41 2.41
5158 5341 0.459078 GCCGAGGGAGTACTGGTTAC 59.541 60.000 0.00 0.00 0.00 2.50
5159 5342 0.685458 GGCCGAGGGAGTACTGGTTA 60.685 60.000 0.00 0.00 0.00 2.85
5160 5343 1.988406 GGCCGAGGGAGTACTGGTT 60.988 63.158 0.00 0.00 0.00 3.67
5161 5344 2.363925 GGCCGAGGGAGTACTGGT 60.364 66.667 0.00 0.00 0.00 4.00
5162 5345 3.528370 CGGCCGAGGGAGTACTGG 61.528 72.222 24.07 0.00 0.00 4.00
5163 5346 1.601419 TTTCGGCCGAGGGAGTACTG 61.601 60.000 29.20 0.00 0.00 2.74
5164 5347 0.686769 ATTTCGGCCGAGGGAGTACT 60.687 55.000 29.20 3.31 0.00 2.73
5165 5348 0.249363 GATTTCGGCCGAGGGAGTAC 60.249 60.000 29.20 12.57 0.00 2.73
5166 5349 0.685131 TGATTTCGGCCGAGGGAGTA 60.685 55.000 29.20 9.79 0.00 2.59
5167 5350 1.987855 TGATTTCGGCCGAGGGAGT 60.988 57.895 29.20 10.85 0.00 3.85
5168 5351 1.521681 GTGATTTCGGCCGAGGGAG 60.522 63.158 29.20 0.00 0.00 4.30
5169 5352 1.987855 AGTGATTTCGGCCGAGGGA 60.988 57.895 29.20 18.49 0.00 4.20
5170 5353 1.815421 CAGTGATTTCGGCCGAGGG 60.815 63.158 29.20 9.87 0.00 4.30
5171 5354 0.673644 AACAGTGATTTCGGCCGAGG 60.674 55.000 29.20 14.54 0.00 4.63
5172 5355 0.721718 GAACAGTGATTTCGGCCGAG 59.278 55.000 29.20 17.22 0.00 4.63
5193 5376 5.297278 TGTGACAATAAACGCTAACAAGGTT 59.703 36.000 0.00 0.00 0.00 3.50
5218 5401 0.859232 CTTTCACGTCGGGTTCAGTG 59.141 55.000 0.00 0.00 36.06 3.66
5277 5460 1.745232 AGTGTTGACTGAAAACGCCA 58.255 45.000 7.00 0.00 38.51 5.69
5288 5471 0.653636 TTCGGCGTTTCAGTGTTGAC 59.346 50.000 6.85 0.00 31.71 3.18
5296 5479 1.598601 GTTAGTTGGTTCGGCGTTTCA 59.401 47.619 6.85 0.39 0.00 2.69
5311 5494 1.270678 GGCCAGGACAGAAACGTTAGT 60.271 52.381 0.00 0.24 0.00 2.24
5315 5498 2.430367 GGGCCAGGACAGAAACGT 59.570 61.111 4.39 0.00 0.00 3.99
5350 5533 0.863957 GCCACGTCAACAAACAACGG 60.864 55.000 0.00 0.00 40.58 4.44
5356 5539 0.453793 CAACCTGCCACGTCAACAAA 59.546 50.000 0.00 0.00 0.00 2.83
5386 5569 1.810151 GCACCAAAAACGCTAGATGGA 59.190 47.619 0.00 0.00 35.16 3.41
5390 5573 2.248280 TCTGCACCAAAAACGCTAGA 57.752 45.000 0.00 0.00 0.00 2.43
5400 5583 3.699038 GCCACCTAAAATATCTGCACCAA 59.301 43.478 0.00 0.00 0.00 3.67
5433 5643 0.673644 GAGTGACGAATGGTGGGTGG 60.674 60.000 0.00 0.00 0.00 4.61
5443 5653 1.893801 GGGGAAGAAGAGAGTGACGAA 59.106 52.381 0.00 0.00 0.00 3.85
5446 5656 3.604582 CAATGGGGAAGAAGAGAGTGAC 58.395 50.000 0.00 0.00 0.00 3.67
5459 5673 2.153401 CGGGATAGGCCAATGGGGA 61.153 63.158 5.01 0.00 40.01 4.81
5488 5702 1.507742 AGGGACACAAAGGGGGAAAAT 59.492 47.619 0.00 0.00 0.00 1.82
5543 5757 1.295423 CGAATCCACGGACCAACCT 59.705 57.895 0.00 0.00 36.31 3.50
5808 6025 3.144657 ACAAAACCCCTAACCCTAACG 57.855 47.619 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.