Multiple sequence alignment - TraesCS3A01G199800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G199800 chr3A 100.000 6573 0 0 1 6573 327295961 327289389 0.000000e+00 12139.0
1 TraesCS3A01G199800 chr3A 81.949 1180 165 23 3409 4545 728238055 728236881 0.000000e+00 955.0
2 TraesCS3A01G199800 chr3A 79.167 1416 212 41 3221 4558 728099818 728098408 0.000000e+00 904.0
3 TraesCS3A01G199800 chr3A 88.971 136 15 0 6435 6570 332203210 332203345 1.130000e-37 169.0
4 TraesCS3A01G199800 chr3B 95.270 3890 115 25 785 4627 351287397 351291264 0.000000e+00 6100.0
5 TraesCS3A01G199800 chr3B 96.844 602 16 1 4764 5362 351291372 351291973 0.000000e+00 1003.0
6 TraesCS3A01G199800 chr3B 80.629 1177 158 46 3405 4541 805098587 805097441 0.000000e+00 846.0
7 TraesCS3A01G199800 chr3B 88.249 417 44 4 374 786 351221877 351222292 1.650000e-135 494.0
8 TraesCS3A01G199800 chr3B 97.727 264 3 2 5470 5733 351291959 351292219 1.010000e-122 451.0
9 TraesCS3A01G199800 chr3B 89.542 153 5 3 5746 5895 351292305 351292449 4.050000e-42 183.0
10 TraesCS3A01G199800 chr3B 89.147 129 14 0 6442 6570 313924137 313924009 1.900000e-35 161.0
11 TraesCS3A01G199800 chr3B 86.777 121 9 5 5362 5479 786359800 786359684 1.920000e-25 128.0
12 TraesCS3A01G199800 chr3B 97.561 41 1 0 4723 4763 351291292 351291332 3.290000e-08 71.3
13 TraesCS3A01G199800 chr3D 95.791 3017 65 16 785 3749 256990301 256987295 0.000000e+00 4811.0
14 TraesCS3A01G199800 chr3D 94.549 1174 30 17 4764 5909 256986327 256985160 0.000000e+00 1783.0
15 TraesCS3A01G199800 chr3D 92.810 904 40 6 3776 4675 256987307 256986425 0.000000e+00 1286.0
16 TraesCS3A01G199800 chr3D 88.861 808 59 11 5 786 256991174 256990372 0.000000e+00 965.0
17 TraesCS3A01G199800 chr3D 94.972 358 17 1 5902 6259 256984339 256983983 1.600000e-155 560.0
18 TraesCS3A01G199800 chr3D 96.626 326 11 0 6246 6571 256979231 256978906 5.800000e-150 542.0
19 TraesCS3A01G199800 chr3D 86.758 438 38 12 4140 4558 598077454 598077018 2.770000e-128 470.0
20 TraesCS3A01G199800 chr3D 79.049 568 97 16 3534 4094 606137267 606137819 2.900000e-98 370.0
21 TraesCS3A01G199800 chr3D 89.706 136 14 0 6436 6571 525823773 525823638 2.440000e-39 174.0
22 TraesCS3A01G199800 chr3D 90.769 130 11 1 6441 6570 252429046 252428918 8.760000e-39 172.0
23 TraesCS3A01G199800 chr3D 89.764 127 13 0 6444 6570 252352342 252352216 5.270000e-36 163.0
24 TraesCS3A01G199800 chr7B 82.007 1345 164 44 3273 4554 460587750 460586421 0.000000e+00 1072.0
25 TraesCS3A01G199800 chr7B 78.942 945 141 34 3652 4545 138034296 138035233 2.040000e-164 590.0
26 TraesCS3A01G199800 chr7B 79.819 664 110 14 3502 4150 68584012 68584666 4.640000e-126 462.0
27 TraesCS3A01G199800 chr7B 78.898 635 118 12 3469 4097 244297205 244296581 3.670000e-112 416.0
28 TraesCS3A01G199800 chr7B 97.561 41 1 0 4785 4825 689889102 689889062 3.290000e-08 71.3
29 TraesCS3A01G199800 chr2D 81.617 767 84 31 3829 4554 337847721 337846971 3.420000e-162 582.0
30 TraesCS3A01G199800 chr2D 80.428 654 111 11 3473 4115 43275602 43276249 3.560000e-132 483.0
31 TraesCS3A01G199800 chr2D 79.338 634 115 12 3469 4096 12750541 12749918 1.310000e-116 431.0
32 TraesCS3A01G199800 chr2D 78.989 633 113 15 3469 4094 639930405 639929786 1.320000e-111 414.0
33 TraesCS3A01G199800 chr2D 91.473 129 11 0 6435 6563 55631516 55631644 1.880000e-40 178.0
34 TraesCS3A01G199800 chr2D 91.089 101 7 2 5346 5446 497994719 497994817 1.150000e-27 135.0
35 TraesCS3A01G199800 chr2D 100.000 38 0 0 4788 4825 577164126 577164089 3.290000e-08 71.3
36 TraesCS3A01G199800 chr6B 80.134 599 103 12 3469 4061 46437460 46438048 3.640000e-117 433.0
37 TraesCS3A01G199800 chr6B 89.189 111 6 4 5362 5471 506710407 506710302 4.130000e-27 134.0
38 TraesCS3A01G199800 chr7D 79.213 635 116 11 3469 4097 175660581 175659957 1.690000e-115 427.0
39 TraesCS3A01G199800 chr7D 88.991 109 7 3 5364 5471 37233590 37233486 5.350000e-26 130.0
40 TraesCS3A01G199800 chr7D 95.122 41 2 0 4785 4825 621084750 621084710 1.530000e-06 65.8
41 TraesCS3A01G199800 chr5D 79.245 636 114 14 3469 4097 391356476 391355852 1.690000e-115 427.0
42 TraesCS3A01G199800 chr5B 79.568 602 109 10 3469 4065 71482115 71482707 1.020000e-112 418.0
43 TraesCS3A01G199800 chr5B 78.515 633 119 13 3496 4121 704096174 704095552 3.690000e-107 399.0
44 TraesCS3A01G199800 chr1B 85.106 423 44 12 4140 4544 886917 887338 1.320000e-111 414.0
45 TraesCS3A01G199800 chr1B 77.280 647 131 12 3469 4109 82059051 82058415 3.750000e-97 366.0
46 TraesCS3A01G199800 chr2B 78.491 623 118 12 3496 4112 791468452 791467840 1.720000e-105 394.0
47 TraesCS3A01G199800 chr2B 81.720 186 20 12 4111 4290 682217196 682217373 6.870000e-30 143.0
48 TraesCS3A01G199800 chr7A 78.387 620 122 8 3497 4112 3228892 3228281 6.180000e-105 392.0
49 TraesCS3A01G199800 chr2A 83.410 434 45 16 4141 4555 715377760 715378185 1.730000e-100 377.0
50 TraesCS3A01G199800 chr2A 97.561 41 1 0 4785 4825 764207130 764207170 3.290000e-08 71.3
51 TraesCS3A01G199800 chr1D 77.778 450 60 16 4105 4526 342871333 342870896 2.370000e-59 241.0
52 TraesCS3A01G199800 chr1D 75.057 441 83 18 4142 4557 490403380 490402942 5.240000e-41 180.0
53 TraesCS3A01G199800 chr1D 73.409 440 87 17 4142 4557 460555504 460555071 3.200000e-28 137.0
54 TraesCS3A01G199800 chr4A 88.636 132 15 0 6442 6573 464501313 464501182 1.900000e-35 161.0
55 TraesCS3A01G199800 chr4A 89.431 123 5 5 5353 5471 113601796 113601678 1.480000e-31 148.0
56 TraesCS3A01G199800 chr4A 94.737 95 3 2 5353 5445 555963395 555963301 5.310000e-31 147.0
57 TraesCS3A01G199800 chr4D 88.462 130 15 0 6441 6570 113168960 113168831 2.450000e-34 158.0
58 TraesCS3A01G199800 chr4D 91.262 103 5 2 5362 5464 73247943 73248041 3.200000e-28 137.0
59 TraesCS3A01G199800 chr5A 87.903 124 6 6 5353 5471 570525181 570525062 3.200000e-28 137.0
60 TraesCS3A01G199800 chr6D 73.821 424 76 20 4156 4554 62818562 62818975 1.150000e-27 135.0
61 TraesCS3A01G199800 chr1A 97.561 41 1 0 4785 4825 20515697 20515737 3.290000e-08 71.3
62 TraesCS3A01G199800 chr1A 97.561 41 1 0 4785 4825 20526391 20526431 3.290000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G199800 chr3A 327289389 327295961 6572 True 12139.00 12139 100.0000 1 6573 1 chr3A.!!$R1 6572
1 TraesCS3A01G199800 chr3A 728236881 728238055 1174 True 955.00 955 81.9490 3409 4545 1 chr3A.!!$R3 1136
2 TraesCS3A01G199800 chr3A 728098408 728099818 1410 True 904.00 904 79.1670 3221 4558 1 chr3A.!!$R2 1337
3 TraesCS3A01G199800 chr3B 351287397 351292449 5052 False 1561.66 6100 95.3888 785 5895 5 chr3B.!!$F2 5110
4 TraesCS3A01G199800 chr3B 805097441 805098587 1146 True 846.00 846 80.6290 3405 4541 1 chr3B.!!$R3 1136
5 TraesCS3A01G199800 chr3D 256983983 256991174 7191 True 1881.00 4811 93.3966 5 6259 5 chr3D.!!$R6 6254
6 TraesCS3A01G199800 chr3D 606137267 606137819 552 False 370.00 370 79.0490 3534 4094 1 chr3D.!!$F1 560
7 TraesCS3A01G199800 chr7B 460586421 460587750 1329 True 1072.00 1072 82.0070 3273 4554 1 chr7B.!!$R2 1281
8 TraesCS3A01G199800 chr7B 138034296 138035233 937 False 590.00 590 78.9420 3652 4545 1 chr7B.!!$F2 893
9 TraesCS3A01G199800 chr7B 68584012 68584666 654 False 462.00 462 79.8190 3502 4150 1 chr7B.!!$F1 648
10 TraesCS3A01G199800 chr7B 244296581 244297205 624 True 416.00 416 78.8980 3469 4097 1 chr7B.!!$R1 628
11 TraesCS3A01G199800 chr2D 337846971 337847721 750 True 582.00 582 81.6170 3829 4554 1 chr2D.!!$R2 725
12 TraesCS3A01G199800 chr2D 43275602 43276249 647 False 483.00 483 80.4280 3473 4115 1 chr2D.!!$F1 642
13 TraesCS3A01G199800 chr2D 12749918 12750541 623 True 431.00 431 79.3380 3469 4096 1 chr2D.!!$R1 627
14 TraesCS3A01G199800 chr2D 639929786 639930405 619 True 414.00 414 78.9890 3469 4094 1 chr2D.!!$R4 625
15 TraesCS3A01G199800 chr6B 46437460 46438048 588 False 433.00 433 80.1340 3469 4061 1 chr6B.!!$F1 592
16 TraesCS3A01G199800 chr7D 175659957 175660581 624 True 427.00 427 79.2130 3469 4097 1 chr7D.!!$R2 628
17 TraesCS3A01G199800 chr5D 391355852 391356476 624 True 427.00 427 79.2450 3469 4097 1 chr5D.!!$R1 628
18 TraesCS3A01G199800 chr5B 71482115 71482707 592 False 418.00 418 79.5680 3469 4065 1 chr5B.!!$F1 596
19 TraesCS3A01G199800 chr5B 704095552 704096174 622 True 399.00 399 78.5150 3496 4121 1 chr5B.!!$R1 625
20 TraesCS3A01G199800 chr1B 82058415 82059051 636 True 366.00 366 77.2800 3469 4109 1 chr1B.!!$R1 640
21 TraesCS3A01G199800 chr2B 791467840 791468452 612 True 394.00 394 78.4910 3496 4112 1 chr2B.!!$R1 616
22 TraesCS3A01G199800 chr7A 3228281 3228892 611 True 392.00 392 78.3870 3497 4112 1 chr7A.!!$R1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 668 0.105964 CTGGGTGTTCGGTCACTTCA 59.894 55.000 9.81 8.21 38.28 3.02 F
646 670 0.106149 GGGTGTTCGGTCACTTCAGT 59.894 55.000 9.81 0.00 38.28 3.41 F
780 807 0.994263 GTTCGGTACATCGGGTTTCG 59.006 55.000 0.00 0.00 40.90 3.46 F
1619 1743 1.078848 CAAGGGAGGAAGGCGTCAG 60.079 63.158 2.23 0.00 0.00 3.51 F
3361 3509 1.133761 TCCTCCTCTCGGATCGAATGT 60.134 52.381 0.00 0.00 39.01 2.71 F
4427 4713 0.172803 GGTGTAGCGATTGAGGTCGT 59.827 55.000 0.00 0.00 43.27 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1743 2.548127 GATGCCCTTCCAAAGTGCGC 62.548 60.000 0.0 0.00 34.38 6.09 R
2091 2215 3.173151 TCCAGAATAGTGCCTCTTGACA 58.827 45.455 0.0 0.00 0.00 3.58 R
2320 2444 4.469657 AGAGCACCTGTTTAAATTGGTCA 58.530 39.130 16.7 1.41 37.20 4.02 R
3428 3597 0.178987 ATCTGGCCGATCTCTACCGT 60.179 55.000 0.0 0.00 0.00 4.83 R
4631 4922 0.177836 TCCCTGTCTGTGTGTGTGTG 59.822 55.000 0.0 0.00 0.00 3.82 R
6332 7575 0.032515 TCCTTAGGAGGCATGACGGA 60.033 55.000 0.0 0.00 43.21 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.522569 GGCACCTTCATCGGTAGCT 59.477 57.895 0.00 0.00 34.94 3.32
26 27 1.344763 GGCACCTTCATCGGTAGCTAT 59.655 52.381 0.00 0.00 34.94 2.97
78 89 0.192315 GGGAGGAGGAAGAGGGCTAT 59.808 60.000 0.00 0.00 0.00 2.97
81 92 2.380590 GGAGGAGGAAGAGGGCTATAGA 59.619 54.545 3.21 0.00 0.00 1.98
94 105 2.380941 GCTATAGAGGCTAGGTAGGGC 58.619 57.143 3.21 0.00 0.00 5.19
100 111 3.930012 GCTAGGTAGGGCTGGGCG 61.930 72.222 0.00 0.00 0.00 6.13
140 151 2.258726 GGTGCGGCTCTTCGGTTTT 61.259 57.895 0.00 0.00 0.00 2.43
152 163 4.748892 TCTTCGGTTTTTGCAACAATTCA 58.251 34.783 0.00 0.00 0.00 2.57
167 178 7.711772 TGCAACAATTCAGTTTTGAGAAATCAT 59.288 29.630 0.00 0.00 34.15 2.45
168 179 8.553696 GCAACAATTCAGTTTTGAGAAATCATT 58.446 29.630 0.00 0.00 34.15 2.57
172 183 9.472361 CAATTCAGTTTTGAGAAATCATTGACT 57.528 29.630 0.00 0.00 34.15 3.41
218 229 2.027625 GAGGTTCCGTTGCACCGAG 61.028 63.158 4.75 0.00 38.21 4.63
240 251 3.337694 AATCGGTTTGGTCATCGGTTA 57.662 42.857 0.00 0.00 0.00 2.85
265 288 4.843728 ACCCAATGGCACCGATATAATAG 58.156 43.478 0.00 0.00 33.59 1.73
270 293 7.362056 CCCAATGGCACCGATATAATAGAAAAG 60.362 40.741 0.00 0.00 0.00 2.27
276 299 6.157211 CACCGATATAATAGAAAAGGCGAGT 58.843 40.000 0.00 0.00 0.00 4.18
369 392 3.016736 GTGCCTGCCTGCTAAAAGATAA 58.983 45.455 0.00 0.00 0.00 1.75
413 436 1.236616 TGCTCAGCATTGGGAACACG 61.237 55.000 0.00 0.00 34.31 4.49
444 467 2.675844 CGACCATTAAACTCAATGCCGA 59.324 45.455 0.00 0.00 34.90 5.54
451 474 8.257306 ACCATTAAACTCAATGCCGAAATTATT 58.743 29.630 0.00 0.00 35.06 1.40
518 542 2.579787 CAGAGGTTAGTCGGCGCG 60.580 66.667 0.00 0.00 0.00 6.86
536 560 4.194720 CGGCTCGCTCGCTACCTT 62.195 66.667 0.00 0.00 0.00 3.50
547 571 1.605710 TCGCTACCTTGGTATACTCGC 59.394 52.381 2.25 0.00 0.00 5.03
578 602 2.231529 GCTGCGAGAGATTAGGGTAGA 58.768 52.381 0.00 0.00 0.00 2.59
634 658 3.005472 GGCCTTCTTTTTACTGGGTGTTC 59.995 47.826 0.00 0.00 0.00 3.18
640 664 2.243602 TTTACTGGGTGTTCGGTCAC 57.756 50.000 3.06 3.06 37.57 3.67
644 668 0.105964 CTGGGTGTTCGGTCACTTCA 59.894 55.000 9.81 8.21 38.28 3.02
645 669 0.105964 TGGGTGTTCGGTCACTTCAG 59.894 55.000 9.81 0.00 38.28 3.02
646 670 0.106149 GGGTGTTCGGTCACTTCAGT 59.894 55.000 9.81 0.00 38.28 3.41
647 671 1.474498 GGGTGTTCGGTCACTTCAGTT 60.474 52.381 9.81 0.00 38.28 3.16
706 733 5.427036 TTTTTCAGACATGTAAACCGGTC 57.573 39.130 8.04 0.00 0.00 4.79
707 734 3.755112 TTCAGACATGTAAACCGGTCA 57.245 42.857 8.04 1.03 32.79 4.02
711 738 3.869246 CAGACATGTAAACCGGTCATACC 59.131 47.826 21.36 10.87 32.79 2.73
745 772 3.242837 CGGTATCGGTGTATTCGACTTCA 60.243 47.826 0.00 0.00 39.55 3.02
746 773 4.288531 GGTATCGGTGTATTCGACTTCAG 58.711 47.826 0.00 0.00 39.55 3.02
775 802 1.810959 TTTTGGTTCGGTACATCGGG 58.189 50.000 0.00 0.00 0.00 5.14
780 807 0.994263 GTTCGGTACATCGGGTTTCG 59.006 55.000 0.00 0.00 40.90 3.46
888 1005 4.402155 AGAAAGACGCTGAGATCTGAATCT 59.598 41.667 0.00 0.00 45.16 2.40
889 1006 5.592282 AGAAAGACGCTGAGATCTGAATCTA 59.408 40.000 0.00 0.00 42.46 1.98
955 1073 4.031611 GCTTCTACCCTTCTTTCCCTCTA 58.968 47.826 0.00 0.00 0.00 2.43
1225 1346 1.134098 ACATTTCCAGCCTCCATACCG 60.134 52.381 0.00 0.00 0.00 4.02
1391 1513 2.820197 CCTAGGGTTTCTTTGTTGCCTC 59.180 50.000 0.00 0.00 0.00 4.70
1619 1743 1.078848 CAAGGGAGGAAGGCGTCAG 60.079 63.158 2.23 0.00 0.00 3.51
1791 1915 3.558746 CCTGACAGGATTGCTCTTTCTGT 60.559 47.826 17.22 0.00 37.67 3.41
1977 2101 3.290710 GTGCCAGGTTAATGTGGATGAT 58.709 45.455 9.66 0.00 35.67 2.45
3039 3177 7.616528 TGATGTATCCAGGAGATAAATGTCA 57.383 36.000 0.00 0.00 39.21 3.58
3063 3201 7.446931 TCATTTTATTGCTGACTACCTGTTTGA 59.553 33.333 0.00 0.00 0.00 2.69
3137 3275 3.884693 CAGGAAACATGTGCATGGCTATA 59.115 43.478 15.52 0.00 42.91 1.31
3361 3509 1.133761 TCCTCCTCTCGGATCGAATGT 60.134 52.381 0.00 0.00 39.01 2.71
3433 3602 2.340809 CTTGTGGTGGCGACGGTA 59.659 61.111 0.00 0.00 0.00 4.02
3451 3620 3.357203 GGTAGAGATCGGCCAGATGATA 58.643 50.000 13.68 3.03 40.26 2.15
3455 3625 0.539051 GATCGGCCAGATGATAGGGG 59.461 60.000 13.68 0.00 40.26 4.79
3714 3905 2.612251 GCCCTCCTCCTAGGCTCT 59.388 66.667 2.96 0.00 43.62 4.09
3816 4008 1.454663 GGCCTGATCTGGGGCTTTC 60.455 63.158 19.23 2.42 46.80 2.62
3844 4036 0.464373 CTGGCCGGTGCACAAGATAT 60.464 55.000 20.43 0.00 40.13 1.63
4244 4515 2.743838 GCTTGGCAAGGCATATGCATTT 60.744 45.455 28.07 18.42 42.92 2.32
4427 4713 0.172803 GGTGTAGCGATTGAGGTCGT 59.827 55.000 0.00 0.00 43.27 4.34
4473 4759 2.380084 TGCATCTACTTTGTCGGACC 57.620 50.000 5.55 0.00 0.00 4.46
4629 4920 5.634020 ACAGAATTTTAGAGCTACGACACAC 59.366 40.000 0.00 0.00 0.00 3.82
4631 4922 5.634020 AGAATTTTAGAGCTACGACACACAC 59.366 40.000 0.00 0.00 0.00 3.82
4633 4924 2.983402 TAGAGCTACGACACACACAC 57.017 50.000 0.00 0.00 0.00 3.82
4634 4925 1.029681 AGAGCTACGACACACACACA 58.970 50.000 0.00 0.00 0.00 3.72
4635 4926 1.129326 GAGCTACGACACACACACAC 58.871 55.000 0.00 0.00 0.00 3.82
4636 4927 0.458260 AGCTACGACACACACACACA 59.542 50.000 0.00 0.00 0.00 3.72
4637 4928 0.575390 GCTACGACACACACACACAC 59.425 55.000 0.00 0.00 0.00 3.82
4638 4929 1.915952 CTACGACACACACACACACA 58.084 50.000 0.00 0.00 0.00 3.72
4639 4930 1.586578 CTACGACACACACACACACAC 59.413 52.381 0.00 0.00 0.00 3.82
4640 4931 0.319986 ACGACACACACACACACACA 60.320 50.000 0.00 0.00 0.00 3.72
4641 4932 0.094558 CGACACACACACACACACAC 59.905 55.000 0.00 0.00 0.00 3.82
4642 4933 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
4643 4934 1.128507 GACACACACACACACACACAG 59.871 52.381 0.00 0.00 0.00 3.66
4644 4935 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
4645 4936 1.128507 CACACACACACACACACAGAC 59.871 52.381 0.00 0.00 0.00 3.51
4648 4939 1.009078 CACACACACACACAGACAGG 58.991 55.000 0.00 0.00 0.00 4.00
4664 4955 1.846439 ACAGGGAGAGAGAGAGAGAGG 59.154 57.143 0.00 0.00 0.00 3.69
4668 4959 1.421646 GGAGAGAGAGAGAGAGGGAGG 59.578 61.905 0.00 0.00 0.00 4.30
4672 4963 0.478507 GAGAGAGAGAGGGAGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
4676 4967 2.018086 AGAGAGGGAGGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
4680 4971 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
4686 4977 2.612251 GAGGGAGGGAGGGAGAGG 59.388 72.222 0.00 0.00 0.00 3.69
4687 4978 3.039526 AGGGAGGGAGGGAGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
4689 4980 2.612251 GGAGGGAGGGAGAGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
4690 4981 2.612251 GAGGGAGGGAGAGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
4692 4983 3.036959 GGGAGGGAGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
4695 4986 1.541672 GAGGGAGAGGGAGGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
4696 4987 2.018086 AGGGAGAGGGAGGGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
4698 4989 2.015726 GGAGAGGGAGGGAGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
4699 4990 1.541672 GAGAGGGAGGGAGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
4700 4991 2.018086 AGAGGGAGGGAGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
4702 4993 3.036959 GGGAGGGAGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
4703 4994 2.612251 GGAGGGAGAGGGAGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
4704 4995 2.015726 GGAGGGAGAGGGAGGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
4705 4996 1.541672 GAGGGAGAGGGAGGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
4706 4997 2.018086 AGGGAGAGGGAGGGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
4707 4998 2.612251 GGAGAGGGAGGGAGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
4708 4999 2.015726 GGAGAGGGAGGGAGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
4709 5000 1.541672 GAGAGGGAGGGAGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
4710 5001 0.996762 GAGAGGGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
4711 5002 0.998945 AGAGGGAGGGAGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
4712 5003 2.018086 AGGGAGGGAGAGGGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
4713 5004 2.612251 GGAGGGAGAGGGAGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
4714 5005 2.015726 GGAGGGAGAGGGAGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
4715 5006 1.541672 GAGGGAGAGGGAGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
4716 5007 0.996762 GAGGGAGAGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
4717 5008 0.998945 AGGGAGAGGGAGAGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
4718 5009 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
4719 5010 1.541672 GAGAGGGAGAGGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
4720 5011 0.996762 GAGAGGGAGAGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
4721 5012 0.998945 AGAGGGAGAGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
4725 5016 1.541672 GAGAGGGAGAGGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
4777 5107 6.983474 AAGCTTTGCACTTTTTGTTGTAAT 57.017 29.167 0.00 0.00 0.00 1.89
4886 5216 1.987368 TGGTTAGTCTACCCCCAAACC 59.013 52.381 0.00 0.00 37.39 3.27
4893 5223 0.035725 CTACCCCCAAACCTCCGTTC 60.036 60.000 0.00 0.00 0.00 3.95
5141 5474 5.893255 TGTGCTGGAGGAATATGCTTTATTT 59.107 36.000 0.00 0.00 0.00 1.40
5202 5535 6.327934 GTGCTTTGCAGAAAATCATCACTAT 58.672 36.000 0.00 0.00 40.08 2.12
5304 5637 2.009774 CGAGTTGGGTCATGGAATGTC 58.990 52.381 0.00 0.00 46.80 3.06
5397 5730 3.659786 TGGACCTCATGACTTTGTTACG 58.340 45.455 0.00 0.00 0.00 3.18
5443 5776 0.873054 CATCGATTGATGCAGAGGCC 59.127 55.000 10.05 0.00 45.06 5.19
5733 6073 9.823647 AATTTGATCTATTTGATGACTACGACT 57.176 29.630 0.00 0.00 35.14 4.18
5734 6074 8.634475 TTTGATCTATTTGATGACTACGACTG 57.366 34.615 0.00 0.00 35.14 3.51
5736 6076 7.643579 TGATCTATTTGATGACTACGACTGAG 58.356 38.462 0.00 0.00 35.14 3.35
5737 6077 5.822278 TCTATTTGATGACTACGACTGAGC 58.178 41.667 0.00 0.00 0.00 4.26
5738 6078 3.934457 TTTGATGACTACGACTGAGCA 57.066 42.857 0.00 0.00 0.00 4.26
5739 6079 4.456280 TTTGATGACTACGACTGAGCAT 57.544 40.909 0.00 0.00 0.00 3.79
5763 6176 1.329599 GTTAGCTTTTACCGATGCCCG 59.670 52.381 0.00 0.00 38.18 6.13
5769 6182 1.371595 TTTACCGATGCCCGCTTTAC 58.628 50.000 0.00 0.00 36.84 2.01
5787 6200 7.486870 CCGCTTTACTGGGTTAATAAATTTGAC 59.513 37.037 0.00 0.00 0.00 3.18
5827 6240 8.830201 AAACATCTGCTTATTTGTGCAATTTA 57.170 26.923 0.00 0.00 38.81 1.40
5915 7158 9.123709 GTTCATTGCGATTAAAACAATGTTCTA 57.876 29.630 19.51 0.00 46.79 2.10
5967 7210 0.250513 AGCATGTTCTCCTTCCGACC 59.749 55.000 0.00 0.00 0.00 4.79
5975 7218 0.247736 CTCCTTCCGACCTCTGGTTG 59.752 60.000 0.00 0.00 35.25 3.77
5985 7228 3.556213 CGACCTCTGGTTGAAACATGGTA 60.556 47.826 7.81 0.00 39.36 3.25
5993 7236 5.003160 TGGTTGAAACATGGTAGTCATCTG 58.997 41.667 0.00 0.00 32.92 2.90
6063 7306 5.347907 CGATCCGCTACCCTATTTTAATCAC 59.652 44.000 0.00 0.00 0.00 3.06
6097 7340 6.866179 AACTTACGTAGAATAAACTCAGCG 57.134 37.500 0.00 0.00 0.00 5.18
6111 7354 0.320683 TCAGCGACAAGTGGACCATG 60.321 55.000 0.00 0.00 0.00 3.66
6174 7417 1.407258 CTCGGAGGAGTCTGATTGGAC 59.593 57.143 0.00 0.00 37.46 4.02
6182 7425 4.472470 AGGAGTCTGATTGGACAATGATCA 59.528 41.667 0.00 0.00 38.57 2.92
6198 7441 3.877559 TGATCAGGCCTTCACTATGTTG 58.122 45.455 0.00 0.00 0.00 3.33
6208 7451 5.163519 GCCTTCACTATGTTGTAATGCCAAT 60.164 40.000 0.00 0.00 0.00 3.16
6209 7452 6.267817 CCTTCACTATGTTGTAATGCCAATG 58.732 40.000 0.00 0.00 0.00 2.82
6240 7483 5.374921 CTGTATCAGGGCATGAATTTCTCT 58.625 41.667 5.73 0.00 42.53 3.10
6281 7524 9.507329 TGCAGTTAAATAAGAATTTCTCACTCT 57.493 29.630 0.00 0.00 36.67 3.24
6297 7540 9.944376 TTTCTCACTCTAAAGCATAATTGTAGT 57.056 29.630 0.00 0.00 0.00 2.73
6298 7541 9.944376 TTCTCACTCTAAAGCATAATTGTAGTT 57.056 29.630 0.00 0.00 0.00 2.24
6319 7562 9.897349 GTAGTTAAATAAGAATCTGTACGTTGC 57.103 33.333 0.00 0.00 0.00 4.17
6320 7563 8.542497 AGTTAAATAAGAATCTGTACGTTGCA 57.458 30.769 0.00 0.00 0.00 4.08
6321 7564 8.995220 AGTTAAATAAGAATCTGTACGTTGCAA 58.005 29.630 0.00 0.00 0.00 4.08
6322 7565 9.601971 GTTAAATAAGAATCTGTACGTTGCAAA 57.398 29.630 0.00 0.00 0.00 3.68
6323 7566 9.820229 TTAAATAAGAATCTGTACGTTGCAAAG 57.180 29.630 11.02 11.02 0.00 2.77
6324 7567 7.667043 AATAAGAATCTGTACGTTGCAAAGA 57.333 32.000 19.51 9.77 0.00 2.52
6325 7568 4.992381 AGAATCTGTACGTTGCAAAGAC 57.008 40.909 19.51 12.47 0.00 3.01
6326 7569 3.746492 AGAATCTGTACGTTGCAAAGACC 59.254 43.478 19.51 8.91 0.00 3.85
6327 7570 2.605837 TCTGTACGTTGCAAAGACCA 57.394 45.000 19.51 12.71 0.00 4.02
6328 7571 2.206750 TCTGTACGTTGCAAAGACCAC 58.793 47.619 19.51 12.97 0.00 4.16
6329 7572 0.931702 TGTACGTTGCAAAGACCACG 59.068 50.000 19.51 12.01 0.00 4.94
6330 7573 0.383860 GTACGTTGCAAAGACCACGC 60.384 55.000 19.51 0.00 0.00 5.34
6331 7574 0.531090 TACGTTGCAAAGACCACGCT 60.531 50.000 19.51 3.50 0.00 5.07
6332 7575 1.355210 CGTTGCAAAGACCACGCTT 59.645 52.632 6.52 0.00 0.00 4.68
6333 7576 0.657368 CGTTGCAAAGACCACGCTTC 60.657 55.000 6.52 0.00 0.00 3.86
6334 7577 0.317854 GTTGCAAAGACCACGCTTCC 60.318 55.000 0.00 0.00 0.00 3.46
6335 7578 1.781025 TTGCAAAGACCACGCTTCCG 61.781 55.000 0.00 0.00 41.14 4.30
6337 7580 1.860078 CAAAGACCACGCTTCCGTC 59.140 57.895 0.00 0.00 46.39 4.79
6338 7581 0.878523 CAAAGACCACGCTTCCGTCA 60.879 55.000 0.00 0.00 46.39 4.35
6339 7582 0.034896 AAAGACCACGCTTCCGTCAT 59.965 50.000 0.00 0.00 46.39 3.06
6340 7583 0.670546 AAGACCACGCTTCCGTCATG 60.671 55.000 0.00 0.00 46.39 3.07
6341 7584 2.740714 GACCACGCTTCCGTCATGC 61.741 63.158 0.00 0.00 46.39 4.06
6342 7585 3.499737 CCACGCTTCCGTCATGCC 61.500 66.667 0.00 0.00 46.39 4.40
6343 7586 2.434884 CACGCTTCCGTCATGCCT 60.435 61.111 0.00 0.00 46.39 4.75
6344 7587 2.125512 ACGCTTCCGTCATGCCTC 60.126 61.111 0.00 0.00 46.39 4.70
6345 7588 2.892425 CGCTTCCGTCATGCCTCC 60.892 66.667 0.00 0.00 0.00 4.30
6346 7589 2.586792 GCTTCCGTCATGCCTCCT 59.413 61.111 0.00 0.00 0.00 3.69
6347 7590 1.823295 GCTTCCGTCATGCCTCCTA 59.177 57.895 0.00 0.00 0.00 2.94
6348 7591 0.178068 GCTTCCGTCATGCCTCCTAA 59.822 55.000 0.00 0.00 0.00 2.69
6349 7592 1.808133 GCTTCCGTCATGCCTCCTAAG 60.808 57.143 0.00 0.00 0.00 2.18
6350 7593 0.830648 TTCCGTCATGCCTCCTAAGG 59.169 55.000 0.00 0.00 46.44 2.69
6351 7594 0.032515 TCCGTCATGCCTCCTAAGGA 60.033 55.000 0.00 0.00 46.67 3.36
6352 7595 1.051812 CCGTCATGCCTCCTAAGGAT 58.948 55.000 0.00 0.00 46.67 3.24
6353 7596 1.001406 CCGTCATGCCTCCTAAGGATC 59.999 57.143 0.00 0.00 46.67 3.36
6354 7597 1.688735 CGTCATGCCTCCTAAGGATCA 59.311 52.381 0.00 0.00 46.67 2.92
6355 7598 2.301296 CGTCATGCCTCCTAAGGATCAT 59.699 50.000 0.00 0.03 46.67 2.45
6356 7599 3.672808 GTCATGCCTCCTAAGGATCATG 58.327 50.000 11.27 11.27 46.67 3.07
6357 7600 2.039480 TCATGCCTCCTAAGGATCATGC 59.961 50.000 11.79 0.00 46.67 4.06
6358 7601 1.811778 TGCCTCCTAAGGATCATGCT 58.188 50.000 0.00 0.00 46.67 3.79
6359 7602 1.696336 TGCCTCCTAAGGATCATGCTC 59.304 52.381 0.00 0.00 46.67 4.26
6360 7603 1.696336 GCCTCCTAAGGATCATGCTCA 59.304 52.381 0.00 0.00 46.67 4.26
6361 7604 2.549778 GCCTCCTAAGGATCATGCTCAC 60.550 54.545 0.00 0.00 46.67 3.51
6362 7605 2.038295 CCTCCTAAGGATCATGCTCACC 59.962 54.545 0.00 0.00 46.67 4.02
6363 7606 1.688735 TCCTAAGGATCATGCTCACCG 59.311 52.381 0.00 0.00 0.00 4.94
6364 7607 1.506493 CTAAGGATCATGCTCACCGC 58.494 55.000 0.00 0.00 39.77 5.68
6365 7608 0.106708 TAAGGATCATGCTCACCGCC 59.893 55.000 0.00 0.00 38.05 6.13
6366 7609 2.592861 GGATCATGCTCACCGCCC 60.593 66.667 0.00 0.00 38.05 6.13
6367 7610 2.507944 GATCATGCTCACCGCCCT 59.492 61.111 0.00 0.00 38.05 5.19
6368 7611 1.153086 GATCATGCTCACCGCCCTT 60.153 57.895 0.00 0.00 38.05 3.95
6369 7612 1.442526 GATCATGCTCACCGCCCTTG 61.443 60.000 0.00 0.00 38.05 3.61
6370 7613 2.202236 ATCATGCTCACCGCCCTTGT 62.202 55.000 0.00 0.00 38.05 3.16
6371 7614 2.360350 ATGCTCACCGCCCTTGTG 60.360 61.111 0.00 0.00 38.05 3.33
6372 7615 3.196207 ATGCTCACCGCCCTTGTGT 62.196 57.895 0.00 0.00 38.05 3.72
6373 7616 3.357079 GCTCACCGCCCTTGTGTG 61.357 66.667 0.00 0.00 35.25 3.82
6374 7617 2.669569 CTCACCGCCCTTGTGTGG 60.670 66.667 0.00 0.00 41.79 4.17
6376 7619 2.978010 CACCGCCCTTGTGTGGTC 60.978 66.667 0.00 0.00 45.90 4.02
6377 7620 3.168528 ACCGCCCTTGTGTGGTCT 61.169 61.111 0.00 0.00 45.90 3.85
6378 7621 2.669569 CCGCCCTTGTGTGGTCTG 60.670 66.667 0.00 0.00 0.00 3.51
6379 7622 2.669569 CGCCCTTGTGTGGTCTGG 60.670 66.667 0.00 0.00 0.00 3.86
6380 7623 2.836154 GCCCTTGTGTGGTCTGGA 59.164 61.111 0.00 0.00 0.00 3.86
6381 7624 1.302832 GCCCTTGTGTGGTCTGGAG 60.303 63.158 0.00 0.00 0.00 3.86
6382 7625 1.302832 CCCTTGTGTGGTCTGGAGC 60.303 63.158 0.00 0.00 0.00 4.70
6383 7626 1.302832 CCTTGTGTGGTCTGGAGCC 60.303 63.158 0.00 0.00 0.00 4.70
6384 7627 1.451504 CTTGTGTGGTCTGGAGCCA 59.548 57.895 0.00 0.00 0.00 4.75
6385 7628 0.179020 CTTGTGTGGTCTGGAGCCAA 60.179 55.000 0.00 0.00 37.81 4.52
6386 7629 0.465460 TTGTGTGGTCTGGAGCCAAC 60.465 55.000 0.00 0.00 37.81 3.77
6387 7630 1.148273 GTGTGGTCTGGAGCCAACA 59.852 57.895 0.00 0.00 37.81 3.33
6388 7631 0.465460 GTGTGGTCTGGAGCCAACAA 60.465 55.000 0.00 0.00 37.81 2.83
6389 7632 0.179020 TGTGGTCTGGAGCCAACAAG 60.179 55.000 0.00 0.00 37.81 3.16
6390 7633 0.890996 GTGGTCTGGAGCCAACAAGG 60.891 60.000 0.00 0.00 37.81 3.61
6399 7642 4.517663 CCAACAAGGCACCATCCA 57.482 55.556 0.00 0.00 0.00 3.41
6400 7643 2.744062 CCAACAAGGCACCATCCAA 58.256 52.632 0.00 0.00 0.00 3.53
6401 7644 0.604578 CCAACAAGGCACCATCCAAG 59.395 55.000 0.00 0.00 0.00 3.61
6402 7645 0.604578 CAACAAGGCACCATCCAAGG 59.395 55.000 0.00 0.00 0.00 3.61
6403 7646 0.482446 AACAAGGCACCATCCAAGGA 59.518 50.000 0.00 0.00 0.00 3.36
6404 7647 0.038744 ACAAGGCACCATCCAAGGAG 59.961 55.000 0.00 0.00 0.00 3.69
6405 7648 0.329261 CAAGGCACCATCCAAGGAGA 59.671 55.000 0.00 0.00 0.00 3.71
6406 7649 0.622665 AAGGCACCATCCAAGGAGAG 59.377 55.000 0.00 0.00 0.00 3.20
6407 7650 1.225704 GGCACCATCCAAGGAGAGG 59.774 63.158 8.39 8.39 0.00 3.69
6408 7651 1.225704 GCACCATCCAAGGAGAGGG 59.774 63.158 13.10 8.46 43.44 4.30
6409 7652 1.918253 CACCATCCAAGGAGAGGGG 59.082 63.158 13.10 6.75 42.09 4.79
6410 7653 0.916358 CACCATCCAAGGAGAGGGGT 60.916 60.000 13.10 6.93 42.09 4.95
6411 7654 0.722676 ACCATCCAAGGAGAGGGGTA 59.277 55.000 13.10 0.00 42.09 3.69
6412 7655 1.132500 CCATCCAAGGAGAGGGGTAC 58.868 60.000 0.00 0.00 34.01 3.34
6425 7668 3.384532 GGTACCAGGTTCGCCGGA 61.385 66.667 5.05 0.00 43.66 5.14
6426 7669 2.183555 GTACCAGGTTCGCCGGAG 59.816 66.667 5.05 0.00 43.66 4.63
6439 7682 2.997315 CGGAGGTGGAGGCTGACA 60.997 66.667 0.00 0.00 0.00 3.58
6440 7683 2.985456 GGAGGTGGAGGCTGACAG 59.015 66.667 0.00 0.00 0.00 3.51
6441 7684 2.664081 GGAGGTGGAGGCTGACAGG 61.664 68.421 4.26 0.00 0.00 4.00
6442 7685 2.608988 AGGTGGAGGCTGACAGGG 60.609 66.667 4.26 0.00 0.00 4.45
6443 7686 2.930562 GGTGGAGGCTGACAGGGT 60.931 66.667 4.26 0.00 0.00 4.34
6444 7687 2.665603 GTGGAGGCTGACAGGGTC 59.334 66.667 4.26 0.00 0.00 4.46
6445 7688 2.607750 TGGAGGCTGACAGGGTCC 60.608 66.667 4.26 0.00 0.00 4.46
6446 7689 3.403558 GGAGGCTGACAGGGTCCC 61.404 72.222 0.00 0.00 0.00 4.46
6447 7690 2.607750 GAGGCTGACAGGGTCCCA 60.608 66.667 11.55 0.00 0.00 4.37
6448 7691 2.121963 AGGCTGACAGGGTCCCAA 60.122 61.111 11.55 0.00 0.00 4.12
6449 7692 1.774217 AGGCTGACAGGGTCCCAAA 60.774 57.895 11.55 0.00 0.00 3.28
6450 7693 1.603739 GGCTGACAGGGTCCCAAAC 60.604 63.158 11.55 0.84 0.00 2.93
6463 7706 4.278513 CAAACCCGGGGTGCCTGA 62.279 66.667 27.92 0.00 35.34 3.86
6464 7707 4.280019 AAACCCGGGGTGCCTGAC 62.280 66.667 27.92 0.00 35.34 3.51
6468 7711 3.697747 CCGGGGTGCCTGACGTAA 61.698 66.667 0.00 0.00 29.82 3.18
6470 7713 2.267961 GGGGTGCCTGACGTAAGG 59.732 66.667 15.44 15.44 46.39 2.69
6471 7714 2.267961 GGGTGCCTGACGTAAGGG 59.732 66.667 21.10 8.72 46.39 3.95
6472 7715 2.288025 GGGTGCCTGACGTAAGGGA 61.288 63.158 21.10 15.84 46.39 4.20
6473 7716 1.218316 GGTGCCTGACGTAAGGGAG 59.782 63.158 21.10 0.00 38.50 4.30
6474 7717 1.448013 GTGCCTGACGTAAGGGAGC 60.448 63.158 21.10 8.96 38.50 4.70
6475 7718 2.187163 GCCTGACGTAAGGGAGCC 59.813 66.667 21.10 0.00 46.39 4.70
6476 7719 2.901042 CCTGACGTAAGGGAGCCC 59.099 66.667 11.67 0.00 46.39 5.19
6477 7720 2.494918 CTGACGTAAGGGAGCCCG 59.505 66.667 0.00 0.00 46.39 6.13
6478 7721 3.718210 CTGACGTAAGGGAGCCCGC 62.718 68.421 0.00 0.00 46.39 6.13
6479 7722 4.525949 GACGTAAGGGAGCCCGCC 62.526 72.222 0.00 0.00 46.39 6.13
6488 7731 3.541713 GAGCCCGCCCTCGATCTT 61.542 66.667 0.00 0.00 38.10 2.40
6489 7732 3.798954 GAGCCCGCCCTCGATCTTG 62.799 68.421 0.00 0.00 38.10 3.02
6490 7733 4.918201 GCCCGCCCTCGATCTTGG 62.918 72.222 0.00 0.00 38.10 3.61
6491 7734 4.918201 CCCGCCCTCGATCTTGGC 62.918 72.222 6.88 6.88 41.85 4.52
6492 7735 4.918201 CCGCCCTCGATCTTGGCC 62.918 72.222 0.00 0.00 42.29 5.36
6493 7736 4.161295 CGCCCTCGATCTTGGCCA 62.161 66.667 0.00 0.00 42.29 5.36
6494 7737 2.203126 GCCCTCGATCTTGGCCAG 60.203 66.667 5.11 0.00 39.30 4.85
6495 7738 2.507944 CCCTCGATCTTGGCCAGG 59.492 66.667 8.96 8.96 0.00 4.45
6496 7739 2.507944 CCTCGATCTTGGCCAGGG 59.492 66.667 15.86 8.25 0.00 4.45
6497 7740 2.203126 CTCGATCTTGGCCAGGGC 60.203 66.667 15.86 5.91 41.06 5.19
6527 7770 2.110578 CCAAAGGGAATCATGGAACCC 58.889 52.381 12.01 12.01 42.36 4.11
6532 7775 3.229697 GGGAATCATGGAACCCTAAGG 57.770 52.381 12.47 0.00 39.28 2.69
6533 7776 2.783510 GGGAATCATGGAACCCTAAGGA 59.216 50.000 12.47 0.00 39.28 3.36
6534 7777 3.181439 GGGAATCATGGAACCCTAAGGAG 60.181 52.174 12.47 0.00 39.28 3.69
6535 7778 3.181439 GGAATCATGGAACCCTAAGGAGG 60.181 52.174 0.00 0.00 43.33 4.30
6536 7779 1.213296 TCATGGAACCCTAAGGAGGC 58.787 55.000 0.00 0.00 42.21 4.70
6537 7780 0.179045 CATGGAACCCTAAGGAGGCG 60.179 60.000 0.00 0.00 42.21 5.52
6538 7781 0.326238 ATGGAACCCTAAGGAGGCGA 60.326 55.000 0.00 0.00 42.21 5.54
6539 7782 0.545787 TGGAACCCTAAGGAGGCGAA 60.546 55.000 0.00 0.00 42.21 4.70
6540 7783 0.178301 GGAACCCTAAGGAGGCGAAG 59.822 60.000 0.00 0.00 42.21 3.79
6541 7784 0.178301 GAACCCTAAGGAGGCGAAGG 59.822 60.000 0.00 0.00 42.21 3.46
6542 7785 1.911702 AACCCTAAGGAGGCGAAGGC 61.912 60.000 0.00 0.00 46.69 4.35
6558 7801 2.877691 GCAATGAGCGTGTTCCCC 59.122 61.111 0.00 0.00 0.00 4.81
6559 7802 1.971167 GCAATGAGCGTGTTCCCCA 60.971 57.895 0.00 0.00 0.00 4.96
6560 7803 1.523154 GCAATGAGCGTGTTCCCCAA 61.523 55.000 0.00 0.00 0.00 4.12
6561 7804 0.523072 CAATGAGCGTGTTCCCCAAG 59.477 55.000 0.00 0.00 0.00 3.61
6562 7805 0.609131 AATGAGCGTGTTCCCCAAGG 60.609 55.000 0.00 0.00 0.00 3.61
6563 7806 1.779061 ATGAGCGTGTTCCCCAAGGT 61.779 55.000 0.00 0.00 35.94 3.50
6564 7807 1.122632 TGAGCGTGTTCCCCAAGGTA 61.123 55.000 0.00 0.00 33.32 3.08
6565 7808 0.391263 GAGCGTGTTCCCCAAGGTAG 60.391 60.000 0.00 0.00 33.32 3.18
6566 7809 0.834687 AGCGTGTTCCCCAAGGTAGA 60.835 55.000 0.00 0.00 31.33 2.59
6567 7810 0.391263 GCGTGTTCCCCAAGGTAGAG 60.391 60.000 0.00 0.00 0.00 2.43
6568 7811 0.249398 CGTGTTCCCCAAGGTAGAGG 59.751 60.000 0.00 0.00 0.00 3.69
6569 7812 0.618981 GTGTTCCCCAAGGTAGAGGG 59.381 60.000 0.00 0.00 45.04 4.30
6570 7813 1.205460 TGTTCCCCAAGGTAGAGGGC 61.205 60.000 0.00 0.00 44.06 5.19
6571 7814 1.162329 TTCCCCAAGGTAGAGGGCA 59.838 57.895 0.00 0.00 44.06 5.36
6572 7815 0.914417 TTCCCCAAGGTAGAGGGCAG 60.914 60.000 0.00 0.00 44.06 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.153369 CGATGAAGGTGCCGGTGAT 60.153 57.895 1.90 0.00 0.00 3.06
1 2 2.264480 CGATGAAGGTGCCGGTGA 59.736 61.111 1.90 0.00 0.00 4.02
7 8 2.035961 TCATAGCTACCGATGAAGGTGC 59.964 50.000 0.00 1.35 45.54 5.01
24 25 1.687840 CCACCGGTGTCCCCTCATA 60.688 63.158 31.80 0.00 0.00 2.15
44 45 4.845307 CCCTTCCCTCCCCTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
45 46 3.707189 TCCCTTCCCTCCCCTCCC 61.707 72.222 0.00 0.00 0.00 4.30
46 47 2.040359 CTCCCTTCCCTCCCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
47 48 2.040359 CCTCCCTTCCCTCCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
48 49 2.543637 TCCTCCCTTCCCTCCCCT 60.544 66.667 0.00 0.00 0.00 4.79
57 68 1.307430 GCCCTCTTCCTCCTCCCTT 60.307 63.158 0.00 0.00 0.00 3.95
78 89 0.483328 CCAGCCCTACCTAGCCTCTA 59.517 60.000 0.00 0.00 0.00 2.43
81 92 2.287251 CCCAGCCCTACCTAGCCT 59.713 66.667 0.00 0.00 0.00 4.58
126 137 0.030101 TTGCAAAAACCGAAGAGCCG 59.970 50.000 0.00 0.00 0.00 5.52
129 140 4.803088 TGAATTGTTGCAAAAACCGAAGAG 59.197 37.500 3.61 0.00 0.00 2.85
135 146 6.606768 TCAAAACTGAATTGTTGCAAAAACC 58.393 32.000 3.61 0.43 0.00 3.27
140 151 7.548427 TGATTTCTCAAAACTGAATTGTTGCAA 59.452 29.630 0.00 0.00 0.00 4.08
152 163 6.774656 AGACCAGTCAATGATTTCTCAAAACT 59.225 34.615 0.00 0.00 34.37 2.66
218 229 2.081462 ACCGATGACCAAACCGATTTC 58.919 47.619 0.00 0.00 0.00 2.17
240 251 0.843309 TATCGGTGCCATTGGGTCAT 59.157 50.000 4.53 0.00 36.17 3.06
265 288 0.723981 CTGCTGCTACTCGCCTTTTC 59.276 55.000 0.00 0.00 38.05 2.29
270 293 0.878086 GATTCCTGCTGCTACTCGCC 60.878 60.000 0.00 0.00 38.05 5.54
276 299 2.646930 CCACAATGATTCCTGCTGCTA 58.353 47.619 0.00 0.00 0.00 3.49
352 375 6.370166 GGCTAGTATTATCTTTTAGCAGGCAG 59.630 42.308 4.46 0.00 38.72 4.85
369 392 1.424638 ATTGGCGTGGAGGCTAGTAT 58.575 50.000 0.00 0.00 46.88 2.12
407 430 0.992802 GTCGATGCTTCCTCGTGTTC 59.007 55.000 0.00 0.00 37.40 3.18
410 433 0.179100 ATGGTCGATGCTTCCTCGTG 60.179 55.000 0.00 0.00 37.40 4.35
413 436 4.192317 AGTTTAATGGTCGATGCTTCCTC 58.808 43.478 0.00 0.00 0.00 3.71
479 503 3.734902 GCAATTAAATTCACCGCCTCCTG 60.735 47.826 0.00 0.00 0.00 3.86
578 602 2.827390 GCCTACTGCTATCCCTATGGGT 60.827 54.545 2.25 0.00 39.67 4.51
640 664 0.895530 TAGCCCTCGGTCAACTGAAG 59.104 55.000 0.00 0.00 0.00 3.02
644 668 0.323957 GGTTTAGCCCTCGGTCAACT 59.676 55.000 0.00 0.00 0.00 3.16
645 669 2.850439 GGTTTAGCCCTCGGTCAAC 58.150 57.895 0.00 0.00 0.00 3.18
688 715 3.973206 ATGACCGGTTTACATGTCTGA 57.027 42.857 9.42 0.00 0.00 3.27
718 745 4.027377 GTCGAATACACCGATACCGAAAAC 60.027 45.833 0.00 0.00 38.38 2.43
727 754 3.770666 CACTGAAGTCGAATACACCGAT 58.229 45.455 0.00 0.00 38.38 4.18
745 772 1.538075 CGAACCAAAATAACCGGCACT 59.462 47.619 0.00 0.00 0.00 4.40
746 773 1.401800 CCGAACCAAAATAACCGGCAC 60.402 52.381 0.00 0.00 0.00 5.01
775 802 5.847515 CGTTTTGTAGATTGTAACCCGAAAC 59.152 40.000 0.00 0.00 0.00 2.78
780 807 7.586747 TGAAATCGTTTTGTAGATTGTAACCC 58.413 34.615 0.00 0.00 37.19 4.11
1127 1248 3.117169 TCATCCCAATCCCCAATACAAGG 60.117 47.826 0.00 0.00 0.00 3.61
1225 1346 8.997323 CCACTAGTATATGTACTACACTGGTAC 58.003 40.741 5.32 0.00 41.35 3.34
1259 1380 5.957842 TTTTTATGGCACGAGAAACAGAT 57.042 34.783 0.00 0.00 0.00 2.90
1289 1410 2.425668 GTCTCTCCTACTCAGGTCTTGC 59.574 54.545 0.00 0.00 43.18 4.01
1391 1513 4.483950 TCATATCCAGGTAAGGAGAGGTG 58.516 47.826 0.00 0.00 41.90 4.00
1619 1743 2.548127 GATGCCCTTCCAAAGTGCGC 62.548 60.000 0.00 0.00 34.38 6.09
1977 2101 4.955925 AATTCGTTCAGTGTGTGTTTCA 57.044 36.364 0.00 0.00 0.00 2.69
2091 2215 3.173151 TCCAGAATAGTGCCTCTTGACA 58.827 45.455 0.00 0.00 0.00 3.58
2320 2444 4.469657 AGAGCACCTGTTTAAATTGGTCA 58.530 39.130 16.70 1.41 37.20 4.02
2589 2714 6.325919 ACAAAGGACTCATGCGATTAAAAA 57.674 33.333 0.00 0.00 0.00 1.94
3039 3177 7.759489 TCAAACAGGTAGTCAGCAATAAAAT 57.241 32.000 0.00 0.00 0.00 1.82
3063 3201 7.893124 AAGTCAGCATCTTCAAATAATCCAT 57.107 32.000 0.00 0.00 0.00 3.41
3331 3476 1.229788 AGAGGAGGAGCAGCCCTTT 60.230 57.895 4.12 0.00 36.49 3.11
3428 3597 0.178987 ATCTGGCCGATCTCTACCGT 60.179 55.000 0.00 0.00 0.00 4.83
3429 3598 0.242286 CATCTGGCCGATCTCTACCG 59.758 60.000 0.00 0.00 0.00 4.02
3433 3602 2.455557 CCTATCATCTGGCCGATCTCT 58.544 52.381 0.00 0.00 0.00 3.10
3714 3905 2.579657 CCGGAGTGCACCACCACTA 61.580 63.158 23.95 0.00 45.55 2.74
3816 4008 3.953775 ACCGGCCAGACCACCTTG 61.954 66.667 0.00 0.00 39.03 3.61
3844 4036 0.901114 TCCCACGAGAATCCAACCGA 60.901 55.000 0.00 0.00 0.00 4.69
4244 4515 3.891977 CCGTCCCATCTTCAAGAGAGATA 59.108 47.826 0.00 0.00 37.93 1.98
4293 4564 0.877071 GCAGACCCTCAACACACATG 59.123 55.000 0.00 0.00 0.00 3.21
4427 4713 1.360393 ACCCAAAGCCACCTTCCTGA 61.360 55.000 0.00 0.00 0.00 3.86
4473 4759 9.950680 ACAGCCATCTTTATTAATTATTCAACG 57.049 29.630 0.00 0.00 0.00 4.10
4629 4920 1.009078 CCTGTCTGTGTGTGTGTGTG 58.991 55.000 0.00 0.00 0.00 3.82
4631 4922 0.177836 TCCCTGTCTGTGTGTGTGTG 59.822 55.000 0.00 0.00 0.00 3.82
4633 4924 0.752658 TCTCCCTGTCTGTGTGTGTG 59.247 55.000 0.00 0.00 0.00 3.82
4634 4925 1.043816 CTCTCCCTGTCTGTGTGTGT 58.956 55.000 0.00 0.00 0.00 3.72
4635 4926 1.271934 CTCTCTCCCTGTCTGTGTGTG 59.728 57.143 0.00 0.00 0.00 3.82
4636 4927 1.145945 TCTCTCTCCCTGTCTGTGTGT 59.854 52.381 0.00 0.00 0.00 3.72
4637 4928 1.818060 CTCTCTCTCCCTGTCTGTGTG 59.182 57.143 0.00 0.00 0.00 3.82
4638 4929 1.707989 TCTCTCTCTCCCTGTCTGTGT 59.292 52.381 0.00 0.00 0.00 3.72
4639 4930 2.026356 TCTCTCTCTCTCCCTGTCTGTG 60.026 54.545 0.00 0.00 0.00 3.66
4640 4931 2.239654 CTCTCTCTCTCTCCCTGTCTGT 59.760 54.545 0.00 0.00 0.00 3.41
4641 4932 2.505407 TCTCTCTCTCTCTCCCTGTCTG 59.495 54.545 0.00 0.00 0.00 3.51
4642 4933 2.774234 CTCTCTCTCTCTCTCCCTGTCT 59.226 54.545 0.00 0.00 0.00 3.41
4643 4934 2.158755 CCTCTCTCTCTCTCTCCCTGTC 60.159 59.091 0.00 0.00 0.00 3.51
4644 4935 1.846439 CCTCTCTCTCTCTCTCCCTGT 59.154 57.143 0.00 0.00 0.00 4.00
4645 4936 1.143684 CCCTCTCTCTCTCTCTCCCTG 59.856 61.905 0.00 0.00 0.00 4.45
4648 4939 1.421646 CCTCCCTCTCTCTCTCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
4664 4955 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
4668 4959 2.612251 CTCTCCCTCCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
4672 4963 2.612251 CTCCCTCTCCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
4676 4967 2.015726 TCTCCCTCCCTCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
4680 4971 2.015726 TCCCTCTCCCTCCCTCTCC 61.016 68.421 0.00 0.00 0.00 3.71
4686 4977 2.015726 TCTCCCTCCCTCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
4687 4978 1.541672 CTCTCCCTCCCTCTCCCTC 59.458 68.421 0.00 0.00 0.00 4.30
4689 4980 2.612251 CCTCTCCCTCCCTCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
4690 4981 2.015726 TCCCTCTCCCTCCCTCTCC 61.016 68.421 0.00 0.00 0.00 3.71
4692 4983 0.998945 CTCTCCCTCTCCCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
4695 4986 2.612251 CCTCTCCCTCTCCCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
4696 4987 2.015726 TCCCTCTCCCTCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
4698 4989 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
4699 4990 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
4700 4991 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
4702 4993 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
4703 4994 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
4704 4995 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
4705 4996 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
4706 4997 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
4707 4998 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
4708 4999 0.556380 TTCCCTCTCCCTCTCCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
4709 5000 0.340208 TTTCCCTCTCCCTCTCCCTC 59.660 60.000 0.00 0.00 0.00 4.30
4710 5001 0.341609 CTTTCCCTCTCCCTCTCCCT 59.658 60.000 0.00 0.00 0.00 4.20
4711 5002 0.340208 TCTTTCCCTCTCCCTCTCCC 59.660 60.000 0.00 0.00 0.00 4.30
4712 5003 2.237643 GTTTCTTTCCCTCTCCCTCTCC 59.762 54.545 0.00 0.00 0.00 3.71
4713 5004 2.093921 CGTTTCTTTCCCTCTCCCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
4714 5005 1.903183 CGTTTCTTTCCCTCTCCCTCT 59.097 52.381 0.00 0.00 0.00 3.69
4715 5006 1.624312 ACGTTTCTTTCCCTCTCCCTC 59.376 52.381 0.00 0.00 0.00 4.30
4716 5007 1.348036 CACGTTTCTTTCCCTCTCCCT 59.652 52.381 0.00 0.00 0.00 4.20
4717 5008 1.809684 CACGTTTCTTTCCCTCTCCC 58.190 55.000 0.00 0.00 0.00 4.30
4718 5009 1.157585 GCACGTTTCTTTCCCTCTCC 58.842 55.000 0.00 0.00 0.00 3.71
4719 5010 1.157585 GGCACGTTTCTTTCCCTCTC 58.842 55.000 0.00 0.00 0.00 3.20
4720 5011 0.765510 AGGCACGTTTCTTTCCCTCT 59.234 50.000 0.00 0.00 0.00 3.69
4721 5012 1.157585 GAGGCACGTTTCTTTCCCTC 58.842 55.000 0.00 0.00 32.93 4.30
4725 5016 3.000082 CCAAAGAGGCACGTTTCTTTC 58.000 47.619 13.61 0.00 40.62 2.62
4777 5107 0.880278 AGCGAACTGAAGCAAAGCGA 60.880 50.000 0.00 0.00 35.48 4.93
4975 5305 4.879545 GGCATGCCATTTCATCAATTTTCT 59.120 37.500 32.08 0.00 35.81 2.52
5202 5535 8.088365 CGATCTTTGGTCAGTATGGATGTATTA 58.912 37.037 0.00 0.00 36.16 0.98
5304 5637 8.576442 ACCTGTTCCAAAGTTAAGAACATTATG 58.424 33.333 16.67 8.53 46.31 1.90
5488 5828 6.701145 TTACAGGAATAGTGTGTGCAAAAA 57.299 33.333 0.00 0.00 0.00 1.94
5733 6073 4.083537 CGGTAAAAGCTAACAACATGCTCA 60.084 41.667 0.00 0.00 35.85 4.26
5734 6074 4.153475 TCGGTAAAAGCTAACAACATGCTC 59.847 41.667 0.00 0.00 35.85 4.26
5736 6076 4.413495 TCGGTAAAAGCTAACAACATGC 57.587 40.909 0.00 0.00 0.00 4.06
5737 6077 4.793216 GCATCGGTAAAAGCTAACAACATG 59.207 41.667 0.00 0.00 0.00 3.21
5738 6078 4.142469 GGCATCGGTAAAAGCTAACAACAT 60.142 41.667 0.00 0.00 0.00 2.71
5739 6079 3.189702 GGCATCGGTAAAAGCTAACAACA 59.810 43.478 0.00 0.00 0.00 3.33
5763 6176 9.135843 GTGTCAAATTTATTAACCCAGTAAAGC 57.864 33.333 0.00 0.00 0.00 3.51
5893 6309 9.128107 CACTTAGAACATTGTTTTAATCGCAAT 57.872 29.630 11.60 0.00 33.64 3.56
5895 6311 7.644490 ACACTTAGAACATTGTTTTAATCGCA 58.356 30.769 11.60 0.00 0.00 5.10
5896 6312 7.801315 TGACACTTAGAACATTGTTTTAATCGC 59.199 33.333 11.60 4.90 0.00 4.58
5897 6313 9.658475 TTGACACTTAGAACATTGTTTTAATCG 57.342 29.630 11.60 8.96 0.00 3.34
5915 7158 3.747708 GCAGGGGAAGTAAGTTGACACTT 60.748 47.826 0.00 0.00 45.73 3.16
5967 7210 4.641396 TGACTACCATGTTTCAACCAGAG 58.359 43.478 0.00 0.00 0.00 3.35
5975 7218 5.292101 GCTACACAGATGACTACCATGTTTC 59.708 44.000 0.00 0.00 35.17 2.78
5985 7228 4.222810 TGTTGTATGGCTACACAGATGACT 59.777 41.667 0.00 0.00 37.58 3.41
5993 7236 6.548441 TTTAACACTGTTGTATGGCTACAC 57.452 37.500 4.57 0.00 37.58 2.90
6023 7266 1.679680 GATCGACCCCAATACACTCGA 59.320 52.381 0.00 0.00 37.74 4.04
6036 7279 1.254954 AATAGGGTAGCGGATCGACC 58.745 55.000 0.00 0.00 39.45 4.79
6097 7340 3.678056 TCAGTACATGGTCCACTTGTC 57.322 47.619 1.22 0.00 38.33 3.18
6111 7354 1.207329 AGGGCTTGGATCGTTCAGTAC 59.793 52.381 0.00 0.00 0.00 2.73
6174 7417 4.458397 ACATAGTGAAGGCCTGATCATTG 58.542 43.478 5.69 9.41 0.00 2.82
6182 7425 3.947834 GCATTACAACATAGTGAAGGCCT 59.052 43.478 0.00 0.00 0.00 5.19
6198 7441 2.034124 AGGTCATGGCATTGGCATTAC 58.966 47.619 21.88 22.27 46.61 1.89
6209 7452 4.471480 ATGCCCTGATACAGGTCATGGC 62.471 54.545 12.47 13.90 46.57 4.40
6271 7514 9.944376 ACTACAATTATGCTTTAGAGTGAGAAA 57.056 29.630 0.00 0.00 0.00 2.52
6272 7515 9.944376 AACTACAATTATGCTTTAGAGTGAGAA 57.056 29.630 0.00 0.00 0.00 2.87
6293 7536 9.897349 GCAACGTACAGATTCTTATTTAACTAC 57.103 33.333 0.00 0.00 0.00 2.73
6294 7537 9.642327 TGCAACGTACAGATTCTTATTTAACTA 57.358 29.630 0.00 0.00 0.00 2.24
6295 7538 8.542497 TGCAACGTACAGATTCTTATTTAACT 57.458 30.769 0.00 0.00 0.00 2.24
6296 7539 9.601971 TTTGCAACGTACAGATTCTTATTTAAC 57.398 29.630 0.00 0.00 0.00 2.01
6297 7540 9.820229 CTTTGCAACGTACAGATTCTTATTTAA 57.180 29.630 0.00 0.00 0.00 1.52
6298 7541 9.210329 TCTTTGCAACGTACAGATTCTTATTTA 57.790 29.630 0.00 0.00 0.00 1.40
6299 7542 8.015658 GTCTTTGCAACGTACAGATTCTTATTT 58.984 33.333 0.00 0.00 0.00 1.40
6300 7543 7.360946 GGTCTTTGCAACGTACAGATTCTTATT 60.361 37.037 0.00 0.00 0.00 1.40
6301 7544 6.092259 GGTCTTTGCAACGTACAGATTCTTAT 59.908 38.462 0.00 0.00 0.00 1.73
6302 7545 5.407387 GGTCTTTGCAACGTACAGATTCTTA 59.593 40.000 0.00 0.00 0.00 2.10
6303 7546 4.213482 GGTCTTTGCAACGTACAGATTCTT 59.787 41.667 0.00 0.00 0.00 2.52
6304 7547 3.746492 GGTCTTTGCAACGTACAGATTCT 59.254 43.478 0.00 0.00 0.00 2.40
6305 7548 3.496884 TGGTCTTTGCAACGTACAGATTC 59.503 43.478 0.00 0.00 0.00 2.52
6306 7549 3.250040 GTGGTCTTTGCAACGTACAGATT 59.750 43.478 0.00 0.00 0.00 2.40
6307 7550 2.806244 GTGGTCTTTGCAACGTACAGAT 59.194 45.455 0.00 0.00 0.00 2.90
6308 7551 2.206750 GTGGTCTTTGCAACGTACAGA 58.793 47.619 0.00 0.00 0.00 3.41
6309 7552 1.070843 CGTGGTCTTTGCAACGTACAG 60.071 52.381 0.00 0.00 0.00 2.74
6310 7553 0.931702 CGTGGTCTTTGCAACGTACA 59.068 50.000 0.00 0.00 0.00 2.90
6311 7554 0.383860 GCGTGGTCTTTGCAACGTAC 60.384 55.000 0.00 0.00 38.28 3.67
6312 7555 0.531090 AGCGTGGTCTTTGCAACGTA 60.531 50.000 0.00 0.00 38.28 3.57
6313 7556 1.373590 AAGCGTGGTCTTTGCAACGT 61.374 50.000 0.00 0.00 38.28 3.99
6314 7557 0.657368 GAAGCGTGGTCTTTGCAACG 60.657 55.000 0.00 0.00 39.00 4.10
6315 7558 0.317854 GGAAGCGTGGTCTTTGCAAC 60.318 55.000 0.00 0.00 0.00 4.17
6316 7559 1.781025 CGGAAGCGTGGTCTTTGCAA 61.781 55.000 0.00 0.00 0.00 4.08
6317 7560 2.250939 CGGAAGCGTGGTCTTTGCA 61.251 57.895 0.00 0.00 0.00 4.08
6318 7561 2.171489 GACGGAAGCGTGGTCTTTGC 62.171 60.000 0.00 0.00 0.00 3.68
6319 7562 0.878523 TGACGGAAGCGTGGTCTTTG 60.879 55.000 0.00 0.00 0.00 2.77
6320 7563 0.034896 ATGACGGAAGCGTGGTCTTT 59.965 50.000 0.00 0.00 0.00 2.52
6321 7564 0.670546 CATGACGGAAGCGTGGTCTT 60.671 55.000 0.00 0.00 0.00 3.01
6322 7565 1.079819 CATGACGGAAGCGTGGTCT 60.080 57.895 0.00 0.00 0.00 3.85
6323 7566 2.740714 GCATGACGGAAGCGTGGTC 61.741 63.158 0.00 0.00 0.00 4.02
6324 7567 2.742372 GCATGACGGAAGCGTGGT 60.742 61.111 0.00 0.00 0.00 4.16
6325 7568 3.499737 GGCATGACGGAAGCGTGG 61.500 66.667 0.00 0.00 0.00 4.94
6326 7569 2.434884 AGGCATGACGGAAGCGTG 60.435 61.111 0.00 0.00 0.00 5.34
6327 7570 2.125512 GAGGCATGACGGAAGCGT 60.126 61.111 0.00 0.00 0.00 5.07
6328 7571 2.016393 TAGGAGGCATGACGGAAGCG 62.016 60.000 0.00 0.00 0.00 4.68
6329 7572 0.178068 TTAGGAGGCATGACGGAAGC 59.822 55.000 0.00 0.00 0.00 3.86
6330 7573 1.202580 CCTTAGGAGGCATGACGGAAG 60.203 57.143 0.00 0.00 35.94 3.46
6331 7574 0.830648 CCTTAGGAGGCATGACGGAA 59.169 55.000 0.00 0.00 35.94 4.30
6332 7575 0.032515 TCCTTAGGAGGCATGACGGA 60.033 55.000 0.00 0.00 43.21 4.69
6333 7576 1.001406 GATCCTTAGGAGGCATGACGG 59.999 57.143 7.19 0.00 43.21 4.79
6334 7577 1.688735 TGATCCTTAGGAGGCATGACG 59.311 52.381 7.19 0.00 43.21 4.35
6335 7578 3.672808 CATGATCCTTAGGAGGCATGAC 58.327 50.000 28.18 0.00 44.20 3.06
6336 7579 2.039480 GCATGATCCTTAGGAGGCATGA 59.961 50.000 32.53 6.22 44.20 3.07
6337 7580 2.040012 AGCATGATCCTTAGGAGGCATG 59.960 50.000 27.96 27.96 44.23 4.06
6338 7581 2.305343 GAGCATGATCCTTAGGAGGCAT 59.695 50.000 7.19 10.06 43.21 4.40
6339 7582 1.696336 GAGCATGATCCTTAGGAGGCA 59.304 52.381 7.19 8.05 43.21 4.75
6340 7583 1.696336 TGAGCATGATCCTTAGGAGGC 59.304 52.381 8.78 7.89 43.21 4.70
6341 7584 2.038295 GGTGAGCATGATCCTTAGGAGG 59.962 54.545 8.78 0.00 45.02 4.30
6342 7585 2.288702 CGGTGAGCATGATCCTTAGGAG 60.289 54.545 8.78 0.00 34.05 3.69
6343 7586 1.688735 CGGTGAGCATGATCCTTAGGA 59.311 52.381 8.78 2.37 35.55 2.94
6344 7587 2.160822 CGGTGAGCATGATCCTTAGG 57.839 55.000 8.78 0.00 0.00 2.69
6357 7600 2.669569 CCACACAAGGGCGGTGAG 60.670 66.667 9.15 2.17 39.53 3.51
6358 7601 3.469863 GACCACACAAGGGCGGTGA 62.470 63.158 9.15 0.00 39.53 4.02
6359 7602 2.978010 GACCACACAAGGGCGGTG 60.978 66.667 0.00 0.00 41.95 4.94
6360 7603 3.168528 AGACCACACAAGGGCGGT 61.169 61.111 0.00 0.00 43.43 5.68
6361 7604 2.669569 CAGACCACACAAGGGCGG 60.670 66.667 0.00 0.00 43.43 6.13
6362 7605 2.669569 CCAGACCACACAAGGGCG 60.670 66.667 0.00 0.00 43.43 6.13
6363 7606 1.302832 CTCCAGACCACACAAGGGC 60.303 63.158 0.00 0.00 36.73 5.19
6364 7607 1.302832 GCTCCAGACCACACAAGGG 60.303 63.158 0.00 0.00 0.00 3.95
6365 7608 1.302832 GGCTCCAGACCACACAAGG 60.303 63.158 0.00 0.00 0.00 3.61
6366 7609 0.179020 TTGGCTCCAGACCACACAAG 60.179 55.000 0.00 0.00 36.76 3.16
6367 7610 0.465460 GTTGGCTCCAGACCACACAA 60.465 55.000 0.00 0.00 36.76 3.33
6368 7611 1.148273 GTTGGCTCCAGACCACACA 59.852 57.895 0.00 0.00 36.76 3.72
6369 7612 0.465460 TTGTTGGCTCCAGACCACAC 60.465 55.000 0.00 0.00 36.76 3.82
6370 7613 0.179020 CTTGTTGGCTCCAGACCACA 60.179 55.000 0.00 0.00 36.76 4.17
6371 7614 0.890996 CCTTGTTGGCTCCAGACCAC 60.891 60.000 0.00 0.00 36.76 4.16
6372 7615 1.455849 CCTTGTTGGCTCCAGACCA 59.544 57.895 0.00 0.00 34.65 4.02
6373 7616 4.404691 CCTTGTTGGCTCCAGACC 57.595 61.111 0.00 0.00 0.00 3.85
6382 7625 0.604578 CTTGGATGGTGCCTTGTTGG 59.395 55.000 0.00 0.00 39.35 3.77
6383 7626 0.604578 CCTTGGATGGTGCCTTGTTG 59.395 55.000 0.00 0.00 0.00 3.33
6384 7627 0.482446 TCCTTGGATGGTGCCTTGTT 59.518 50.000 0.00 0.00 0.00 2.83
6385 7628 0.038744 CTCCTTGGATGGTGCCTTGT 59.961 55.000 0.00 0.00 0.00 3.16
6386 7629 0.329261 TCTCCTTGGATGGTGCCTTG 59.671 55.000 0.00 0.00 0.00 3.61
6387 7630 0.622665 CTCTCCTTGGATGGTGCCTT 59.377 55.000 0.00 0.00 0.00 4.35
6388 7631 1.277580 CCTCTCCTTGGATGGTGCCT 61.278 60.000 0.00 0.00 0.00 4.75
6389 7632 1.225704 CCTCTCCTTGGATGGTGCC 59.774 63.158 0.00 0.00 0.00 5.01
6390 7633 1.225704 CCCTCTCCTTGGATGGTGC 59.774 63.158 7.65 0.00 0.00 5.01
6391 7634 0.916358 ACCCCTCTCCTTGGATGGTG 60.916 60.000 7.65 0.96 0.00 4.17
6392 7635 0.722676 TACCCCTCTCCTTGGATGGT 59.277 55.000 7.65 6.76 0.00 3.55
6393 7636 1.132500 GTACCCCTCTCCTTGGATGG 58.868 60.000 0.00 0.00 0.00 3.51
6394 7637 1.132500 GGTACCCCTCTCCTTGGATG 58.868 60.000 0.00 0.00 0.00 3.51
6395 7638 0.722676 TGGTACCCCTCTCCTTGGAT 59.277 55.000 10.07 0.00 0.00 3.41
6396 7639 0.042731 CTGGTACCCCTCTCCTTGGA 59.957 60.000 10.07 0.00 0.00 3.53
6397 7640 0.983378 CCTGGTACCCCTCTCCTTGG 60.983 65.000 10.07 0.00 0.00 3.61
6398 7641 0.252742 ACCTGGTACCCCTCTCCTTG 60.253 60.000 10.07 0.00 0.00 3.61
6399 7642 0.496841 AACCTGGTACCCCTCTCCTT 59.503 55.000 10.07 0.00 0.00 3.36
6400 7643 0.042881 GAACCTGGTACCCCTCTCCT 59.957 60.000 10.07 0.00 0.00 3.69
6401 7644 1.328430 CGAACCTGGTACCCCTCTCC 61.328 65.000 10.07 0.00 0.00 3.71
6402 7645 1.957765 GCGAACCTGGTACCCCTCTC 61.958 65.000 10.07 0.24 0.00 3.20
6403 7646 1.988406 GCGAACCTGGTACCCCTCT 60.988 63.158 10.07 0.00 0.00 3.69
6404 7647 2.582978 GCGAACCTGGTACCCCTC 59.417 66.667 10.07 0.00 0.00 4.30
6405 7648 3.007323 GGCGAACCTGGTACCCCT 61.007 66.667 10.07 0.00 0.00 4.79
6406 7649 4.462280 CGGCGAACCTGGTACCCC 62.462 72.222 10.07 0.00 0.00 4.95
6407 7650 4.462280 CCGGCGAACCTGGTACCC 62.462 72.222 9.30 0.00 0.00 3.69
6408 7651 3.366739 CTCCGGCGAACCTGGTACC 62.367 68.421 9.30 4.43 33.11 3.34
6409 7652 2.183555 CTCCGGCGAACCTGGTAC 59.816 66.667 9.30 0.00 33.11 3.34
6410 7653 3.072468 CCTCCGGCGAACCTGGTA 61.072 66.667 9.30 0.00 33.11 3.25
6412 7655 4.760047 CACCTCCGGCGAACCTGG 62.760 72.222 9.30 5.24 0.00 4.45
6413 7656 4.760047 CCACCTCCGGCGAACCTG 62.760 72.222 9.30 0.00 0.00 4.00
6415 7658 4.452733 CTCCACCTCCGGCGAACC 62.453 72.222 9.30 0.00 0.00 3.62
6416 7659 4.452733 CCTCCACCTCCGGCGAAC 62.453 72.222 9.30 0.00 0.00 3.95
6421 7664 3.775654 GTCAGCCTCCACCTCCGG 61.776 72.222 0.00 0.00 0.00 5.14
6422 7665 2.997315 TGTCAGCCTCCACCTCCG 60.997 66.667 0.00 0.00 0.00 4.63
6423 7666 2.664081 CCTGTCAGCCTCCACCTCC 61.664 68.421 0.00 0.00 0.00 4.30
6424 7667 2.664081 CCCTGTCAGCCTCCACCTC 61.664 68.421 0.00 0.00 0.00 3.85
6425 7668 2.608988 CCCTGTCAGCCTCCACCT 60.609 66.667 0.00 0.00 0.00 4.00
6426 7669 2.930562 ACCCTGTCAGCCTCCACC 60.931 66.667 0.00 0.00 0.00 4.61
6427 7670 2.665603 GACCCTGTCAGCCTCCAC 59.334 66.667 0.00 0.00 32.09 4.02
6428 7671 2.607750 GGACCCTGTCAGCCTCCA 60.608 66.667 8.51 0.00 33.68 3.86
6429 7672 3.403558 GGGACCCTGTCAGCCTCC 61.404 72.222 2.09 0.01 33.68 4.30
6430 7673 1.779061 TTTGGGACCCTGTCAGCCTC 61.779 60.000 13.00 0.00 33.68 4.70
6431 7674 1.774217 TTTGGGACCCTGTCAGCCT 60.774 57.895 13.00 0.00 33.68 4.58
6432 7675 1.603739 GTTTGGGACCCTGTCAGCC 60.604 63.158 13.00 0.00 33.68 4.85
6433 7676 1.603739 GGTTTGGGACCCTGTCAGC 60.604 63.158 13.00 0.00 43.06 4.26
6434 7677 4.821935 GGTTTGGGACCCTGTCAG 57.178 61.111 13.00 0.00 43.06 3.51
6446 7689 4.278513 TCAGGCACCCCGGGTTTG 62.279 66.667 21.85 17.34 31.02 2.93
6447 7690 4.280019 GTCAGGCACCCCGGGTTT 62.280 66.667 21.85 2.04 31.02 3.27
6451 7694 3.659089 CTTACGTCAGGCACCCCGG 62.659 68.421 0.00 0.00 35.76 5.73
6452 7695 2.125673 CTTACGTCAGGCACCCCG 60.126 66.667 0.00 0.00 35.76 5.73
6453 7696 2.267961 CCTTACGTCAGGCACCCC 59.732 66.667 2.15 0.00 0.00 4.95
6454 7697 2.240162 CTCCCTTACGTCAGGCACCC 62.240 65.000 10.46 0.00 31.69 4.61
6455 7698 1.218316 CTCCCTTACGTCAGGCACC 59.782 63.158 10.46 0.00 31.69 5.01
6456 7699 1.448013 GCTCCCTTACGTCAGGCAC 60.448 63.158 10.46 0.00 31.69 5.01
6457 7700 2.656069 GGCTCCCTTACGTCAGGCA 61.656 63.158 10.46 0.00 31.69 4.75
6458 7701 2.187163 GGCTCCCTTACGTCAGGC 59.813 66.667 10.46 0.00 31.69 4.85
6459 7702 2.901042 GGGCTCCCTTACGTCAGG 59.099 66.667 8.93 8.93 0.00 3.86
6460 7703 2.494918 CGGGCTCCCTTACGTCAG 59.505 66.667 3.11 0.00 0.00 3.51
6461 7704 3.766691 GCGGGCTCCCTTACGTCA 61.767 66.667 3.11 0.00 0.00 4.35
6462 7705 4.525949 GGCGGGCTCCCTTACGTC 62.526 72.222 3.11 0.00 0.00 4.34
6471 7714 3.541713 AAGATCGAGGGCGGGCTC 61.542 66.667 0.26 0.00 38.28 4.70
6472 7715 3.854669 CAAGATCGAGGGCGGGCT 61.855 66.667 0.26 0.00 38.28 5.19
6473 7716 4.918201 CCAAGATCGAGGGCGGGC 62.918 72.222 0.00 0.00 38.28 6.13
6474 7717 4.918201 GCCAAGATCGAGGGCGGG 62.918 72.222 9.12 0.00 38.04 6.13
6478 7721 2.507944 CCTGGCCAAGATCGAGGG 59.492 66.667 7.01 0.00 0.00 4.30
6479 7722 2.507944 CCCTGGCCAAGATCGAGG 59.492 66.667 7.01 1.69 0.00 4.63
6480 7723 2.203126 GCCCTGGCCAAGATCGAG 60.203 66.667 7.01 0.00 34.56 4.04
6497 7740 4.702274 CCCTTTGGGCCTGGTGGG 62.702 72.222 4.53 7.58 35.35 4.61
6498 7741 2.460476 ATTCCCTTTGGGCCTGGTGG 62.460 60.000 4.53 0.21 43.94 4.61
6499 7742 0.972471 GATTCCCTTTGGGCCTGGTG 60.972 60.000 4.53 0.00 43.94 4.17
6500 7743 1.388133 GATTCCCTTTGGGCCTGGT 59.612 57.895 4.53 0.00 43.94 4.00
6501 7744 0.031817 ATGATTCCCTTTGGGCCTGG 60.032 55.000 4.53 4.35 43.94 4.45
6502 7745 1.117150 CATGATTCCCTTTGGGCCTG 58.883 55.000 4.53 0.00 43.94 4.85
6503 7746 0.031817 CCATGATTCCCTTTGGGCCT 60.032 55.000 4.53 0.00 43.94 5.19
6504 7747 0.032217 TCCATGATTCCCTTTGGGCC 60.032 55.000 0.00 0.00 43.94 5.80
6505 7748 1.482182 GTTCCATGATTCCCTTTGGGC 59.518 52.381 0.00 0.00 43.94 5.36
6506 7749 2.110578 GGTTCCATGATTCCCTTTGGG 58.889 52.381 0.00 0.00 46.11 4.12
6507 7750 2.110578 GGGTTCCATGATTCCCTTTGG 58.889 52.381 0.00 0.00 37.18 3.28
6508 7751 3.105959 AGGGTTCCATGATTCCCTTTG 57.894 47.619 13.33 0.00 46.99 2.77
6509 7752 4.326132 CCTTAGGGTTCCATGATTCCCTTT 60.326 45.833 20.67 6.51 46.99 3.11
6510 7753 3.205282 CCTTAGGGTTCCATGATTCCCTT 59.795 47.826 20.67 9.83 46.99 3.95
6512 7755 2.783510 TCCTTAGGGTTCCATGATTCCC 59.216 50.000 0.00 9.89 40.16 3.97
6513 7756 3.181439 CCTCCTTAGGGTTCCATGATTCC 60.181 52.174 0.00 0.00 39.48 3.01
6514 7757 3.748989 GCCTCCTTAGGGTTCCATGATTC 60.749 52.174 0.00 0.00 43.87 2.52
6515 7758 2.175715 GCCTCCTTAGGGTTCCATGATT 59.824 50.000 0.00 0.00 43.87 2.57
6516 7759 1.777272 GCCTCCTTAGGGTTCCATGAT 59.223 52.381 0.00 0.00 43.87 2.45
6517 7760 1.213296 GCCTCCTTAGGGTTCCATGA 58.787 55.000 0.00 0.00 43.87 3.07
6518 7761 0.179045 CGCCTCCTTAGGGTTCCATG 60.179 60.000 0.00 0.00 43.87 3.66
6519 7762 0.326238 TCGCCTCCTTAGGGTTCCAT 60.326 55.000 0.00 0.00 43.87 3.41
6520 7763 0.545787 TTCGCCTCCTTAGGGTTCCA 60.546 55.000 0.00 0.00 43.87 3.53
6521 7764 0.178301 CTTCGCCTCCTTAGGGTTCC 59.822 60.000 0.00 0.00 43.87 3.62
6522 7765 0.178301 CCTTCGCCTCCTTAGGGTTC 59.822 60.000 0.00 0.00 43.87 3.62
6523 7766 1.911702 GCCTTCGCCTCCTTAGGGTT 61.912 60.000 0.00 0.00 43.87 4.11
6524 7767 2.368011 GCCTTCGCCTCCTTAGGGT 61.368 63.158 0.00 0.00 43.87 4.34
6525 7768 1.910580 TTGCCTTCGCCTCCTTAGGG 61.911 60.000 0.00 0.00 43.87 3.53
6526 7769 0.181350 ATTGCCTTCGCCTCCTTAGG 59.819 55.000 0.00 0.00 46.76 2.69
6527 7770 1.134401 TCATTGCCTTCGCCTCCTTAG 60.134 52.381 0.00 0.00 0.00 2.18
6528 7771 0.908910 TCATTGCCTTCGCCTCCTTA 59.091 50.000 0.00 0.00 0.00 2.69
6529 7772 0.393537 CTCATTGCCTTCGCCTCCTT 60.394 55.000 0.00 0.00 0.00 3.36
6530 7773 1.222936 CTCATTGCCTTCGCCTCCT 59.777 57.895 0.00 0.00 0.00 3.69
6531 7774 2.476320 GCTCATTGCCTTCGCCTCC 61.476 63.158 0.00 0.00 35.15 4.30
6532 7775 2.817423 CGCTCATTGCCTTCGCCTC 61.817 63.158 0.00 0.00 38.78 4.70
6533 7776 2.821366 CGCTCATTGCCTTCGCCT 60.821 61.111 0.00 0.00 38.78 5.52
6534 7777 3.127533 ACGCTCATTGCCTTCGCC 61.128 61.111 0.00 0.00 38.78 5.54
6535 7778 2.099062 CACGCTCATTGCCTTCGC 59.901 61.111 0.00 0.00 38.78 4.70
6536 7779 0.179215 GAACACGCTCATTGCCTTCG 60.179 55.000 0.00 0.00 38.78 3.79
6537 7780 0.169009 GGAACACGCTCATTGCCTTC 59.831 55.000 0.00 0.00 38.78 3.46
6538 7781 1.244019 GGGAACACGCTCATTGCCTT 61.244 55.000 0.00 0.00 38.78 4.35
6539 7782 1.675641 GGGAACACGCTCATTGCCT 60.676 57.895 0.00 0.00 38.78 4.75
6540 7783 2.700773 GGGGAACACGCTCATTGCC 61.701 63.158 0.00 0.00 38.78 4.52
6541 7784 1.523154 TTGGGGAACACGCTCATTGC 61.523 55.000 0.00 0.00 38.57 3.56
6542 7785 0.523072 CTTGGGGAACACGCTCATTG 59.477 55.000 0.00 0.00 0.00 2.82
6543 7786 0.609131 CCTTGGGGAACACGCTCATT 60.609 55.000 0.00 0.00 33.58 2.57
6544 7787 1.002134 CCTTGGGGAACACGCTCAT 60.002 57.895 0.00 0.00 33.58 2.90
6545 7788 1.122632 TACCTTGGGGAACACGCTCA 61.123 55.000 0.00 0.00 36.25 4.26
6546 7789 0.391263 CTACCTTGGGGAACACGCTC 60.391 60.000 0.00 0.00 36.25 5.03
6547 7790 0.834687 TCTACCTTGGGGAACACGCT 60.835 55.000 0.00 0.00 36.25 5.07
6548 7791 0.391263 CTCTACCTTGGGGAACACGC 60.391 60.000 0.00 0.00 36.25 5.34
6549 7792 0.249398 CCTCTACCTTGGGGAACACG 59.751 60.000 0.00 0.00 36.25 4.49
6550 7793 0.618981 CCCTCTACCTTGGGGAACAC 59.381 60.000 0.00 0.00 42.58 3.32
6551 7794 1.205460 GCCCTCTACCTTGGGGAACA 61.205 60.000 0.97 0.00 43.53 3.18
6552 7795 1.205460 TGCCCTCTACCTTGGGGAAC 61.205 60.000 0.97 0.00 40.95 3.62
6553 7796 0.914417 CTGCCCTCTACCTTGGGGAA 60.914 60.000 0.97 0.00 43.26 3.97
6554 7797 1.306997 CTGCCCTCTACCTTGGGGA 60.307 63.158 0.97 0.00 43.53 4.81
6555 7798 3.324713 CTGCCCTCTACCTTGGGG 58.675 66.667 0.00 0.00 43.53 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.