AutoCloner

Multiple sequence alignment - TraesCS3A01G199700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G199700	chr3A	100.000	2204	0	0	1	2204	327031596	327033799	0.000000e+00	4071.0
1	TraesCS3A01G199700	chr3A	89.088	1283	129	9	1	1277	327047468	327048745	0.000000e+00	1583.0
2	TraesCS3A01G199700	chr3A	89.450	673	53	6	1277	1947	327048780	327049436	0.000000e+00	833.0
3	TraesCS3A01G199700	chr3A	87.145	739	80	14	1474	2204	558582614	558583345	0.000000e+00	824.0
4	TraesCS3A01G199700	chr1D	86.611	956	109	11	1	950	53527413	53526471	0.000000e+00	1038.0
5	TraesCS3A01G199700	chr1D	84.832	745	92	19	1473	2203	70840225	70839488	0.000000e+00	730.0
6	TraesCS3A01G199700	chr2D	91.322	726	51	11	1478	2197	324576883	324576164	0.000000e+00	981.0
7	TraesCS3A01G199700	chr2D	90.897	725	56	9	1478	2197	324568936	324568217	0.000000e+00	965.0
8	TraesCS3A01G199700	chr2D	87.143	210	18	8	1332	1533	343371276	343371484	1.700000e-56	230.0
9	TraesCS3A01G199700	chr2D	82.101	257	29	9	1332	1572	343322011	343322266	1.030000e-48	204.0
10	TraesCS3A01G199700	chr4D	87.330	884	77	17	1	880	366979845	366978993	0.000000e+00	979.0
11	TraesCS3A01G199700	chr4D	88.272	162	18	1	1325	1485	444733415	444733254	2.230000e-45	193.0
12	TraesCS3A01G199700	chr4D	85.586	111	16	0	1068	1178	312884820	312884710	1.380000e-22	117.0
13	TraesCS3A01G199700	chr4D	83.784	111	17	1	1068	1178	312892876	312892767	1.080000e-18	104.0
14	TraesCS3A01G199700	chr5D	88.811	715	71	6	76	789	491350363	491349657	0.000000e+00	869.0
15	TraesCS3A01G199700	chr5D	86.425	744	84	16	1471	2204	256941310	256940574	0.000000e+00	798.0
16	TraesCS3A01G199700	chr5D	86.604	739	79	18	1471	2198	299008236	299008965	0.000000e+00	798.0
17	TraesCS3A01G199700	chr5D	86.709	474	50	4	784	1246	491332471	491332000	4.200000e-142	514.0
18	TraesCS3A01G199700	chr5A	93.186	587	37	3	1	585	161321428	161320843	0.000000e+00	859.0
19	TraesCS3A01G199700	chr6A	87.263	738	78	14	1474	2203	235201999	235202728	0.000000e+00	828.0
20	TraesCS3A01G199700	chrUn	86.711	745	78	20	1471	2204	279579533	279578799	0.000000e+00	808.0
21	TraesCS3A01G199700	chr2A	85.910	731	91	12	1473	2196	507269465	507268740	0.000000e+00	769.0
22	TraesCS3A01G199700	chr2A	81.091	275	40	9	1929	2195	407294085	407293815	2.220000e-50	209.0
23	TraesCS3A01G199700	chr6B	80.515	544	72	24	1	533	316533739	316533219	9.540000e-104	387.0
24	TraesCS3A01G199700	chr6B	80.479	543	72	24	1	533	316541221	316540703	3.430000e-103	385.0
25	TraesCS3A01G199700	chr3B	80.407	541	76	19	1	533	613428029	613428547	3.430000e-103	385.0
26	TraesCS3A01G199700	chr2B	80.037	541	83	17	1	533	425623684	425623161	5.740000e-101	377.0
27	TraesCS3A01G199700	chr2B	85.859	99	14	0	1	99	372341268	372341170	2.990000e-19	106.0
28	TraesCS3A01G199700	chr2B	82.857	70	9	2	1058	1124	365544573	365544642	2.360000e-05	60.2
29	TraesCS3A01G199700	chr1A	84.862	218	23	9	1325	1533	249567294	249567078	6.170000e-51	211.0
30	TraesCS3A01G199700	chr1A	84.862	218	23	8	1325	1533	249575441	249575225	6.170000e-51	211.0
31	TraesCS3A01G199700	chr1A	83.913	230	27	8	1325	1545	528839777	528839549	6.170000e-51	211.0
32	TraesCS3A01G199700	chr1A	83.486	218	23	9	1325	1533	528831484	528831271	8.030000e-45	191.0
33	TraesCS3A01G199700	chr1A	83.036	112	17	2	1058	1168	384077832	384077942	1.390000e-17	100.0
34	TraesCS3A01G199700	chr4B	84.018	219	22	10	1325	1533	207445141	207444926	4.800000e-47	198.0
35	TraesCS3A01G199700	chr3D	81.349	252	34	11	1352	1596	271258123	271257878	2.230000e-45	193.0
36	TraesCS3A01G199700	chr3D	85.000	120	18	0	1059	1178	603564817	603564936	2.970000e-24	122.0
37	TraesCS3A01G199700	chr4A	85.938	128	16	2	1053	1178	28271094	28271221	3.820000e-28	135.0
38	TraesCS3A01G199700	chr4A	88.298	94	9	2	684	777	217678403	217678312	6.430000e-21	111.0
39	TraesCS3A01G199700	chr4A	86.111	72	10	0	1147	1218	692193451	692193380	6.520000e-11	78.7
40	TraesCS3A01G199700	chr4A	86.111	72	10	0	1147	1218	692201484	692201413	6.520000e-11	78.7
41	TraesCS3A01G199700	chr5B	83.099	71	7	4	1058	1124	16179323	16179254	2.360000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G199700	chr3A	327031596	327033799	2203	False	4071	4071	100.000	1	2204	1	chr3A.!!$F1	2203
1	TraesCS3A01G199700	chr3A	327047468	327049436	1968	False	1208	1583	89.269	1	1947	2	chr3A.!!$F3	1946
2	TraesCS3A01G199700	chr3A	558582614	558583345	731	False	824	824	87.145	1474	2204	1	chr3A.!!$F2	730
3	TraesCS3A01G199700	chr1D	53526471	53527413	942	True	1038	1038	86.611	1	950	1	chr1D.!!$R1	949
4	TraesCS3A01G199700	chr1D	70839488	70840225	737	True	730	730	84.832	1473	2203	1	chr1D.!!$R2	730
5	TraesCS3A01G199700	chr2D	324576164	324576883	719	True	981	981	91.322	1478	2197	1	chr2D.!!$R2	719
6	TraesCS3A01G199700	chr2D	324568217	324568936	719	True	965	965	90.897	1478	2197	1	chr2D.!!$R1	719
7	TraesCS3A01G199700	chr4D	366978993	366979845	852	True	979	979	87.330	1	880	1	chr4D.!!$R3	879
8	TraesCS3A01G199700	chr5D	491349657	491350363	706	True	869	869	88.811	76	789	1	chr5D.!!$R3	713
9	TraesCS3A01G199700	chr5D	256940574	256941310	736	True	798	798	86.425	1471	2204	1	chr5D.!!$R1	733
10	TraesCS3A01G199700	chr5D	299008236	299008965	729	False	798	798	86.604	1471	2198	1	chr5D.!!$F1	727
11	TraesCS3A01G199700	chr5A	161320843	161321428	585	True	859	859	93.186	1	585	1	chr5A.!!$R1	584
12	TraesCS3A01G199700	chr6A	235201999	235202728	729	False	828	828	87.263	1474	2203	1	chr6A.!!$F1	729
13	TraesCS3A01G199700	chrUn	279578799	279579533	734	True	808	808	86.711	1471	2204	1	chrUn.!!$R1	733
14	TraesCS3A01G199700	chr2A	507268740	507269465	725	True	769	769	85.910	1473	2196	1	chr2A.!!$R2	723
15	TraesCS3A01G199700	chr6B	316533219	316533739	520	True	387	387	80.515	1	533	1	chr6B.!!$R1	532
16	TraesCS3A01G199700	chr6B	316540703	316541221	518	True	385	385	80.479	1	533	1	chr6B.!!$R2	532
17	TraesCS3A01G199700	chr3B	613428029	613428547	518	False	385	385	80.407	1	533	1	chr3B.!!$F1	532
18	TraesCS3A01G199700	chr2B	425623161	425623684	523	True	377	377	80.037	1	533	1	chr2B.!!$R2	532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
809	822	0.103572	CAAGCAGCAGCAACCAAAGT	59.896	50.0	3.17	0.0	45.49	2.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2023	2092	0.646055	CCCCCTTACTCCCCCTCTTA	59.354	60.0	0.0	0.0	0.0	2.1	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	9.383519	GAATGTTCCATGTTCAGATAGTTAGAA	57.616	33.333	0.00	0.00	0.00	2.10
33	34	6.946340	TCCATGTTCAGATAGTTAGAAGCAA	58.054	36.000	0.00	0.00	0.00	3.91
102	103	6.494842	TGAGCAACTTTCATGTAGAAAACAC	58.505	36.000	0.00	0.00	45.11	3.32
121	122	4.557205	ACACTTTCATCCGAGTTACAGTC	58.443	43.478	0.00	0.00	0.00	3.51
135	136	9.027129	CCGAGTTACAGTCGAATTTATATGAAA	57.973	33.333	2.50	0.00	43.33	2.69
136	137	9.831054	CGAGTTACAGTCGAATTTATATGAAAC	57.169	33.333	0.00	0.00	43.33	2.78
342	349	0.623723	ACATATCGGGCCCACTTGTT	59.376	50.000	24.92	2.66	0.00	2.83
350	357	1.844497	GGGCCCACTTGTTATAGAGGT	59.156	52.381	19.95	0.00	0.00	3.85
371	378	8.223330	AGAGGTGCTTTATTTGATCTTATCCAT	58.777	33.333	0.00	0.00	0.00	3.41
468	479	2.022820	TGGTAGTTAGTAGATGGGGCCA	60.023	50.000	4.39	0.00	0.00	5.36
469	480	2.367894	GGTAGTTAGTAGATGGGGCCAC	59.632	54.545	4.39	0.00	0.00	5.01
506	519	3.074857	AGGAGGGGGAATATTAGCACA	57.925	47.619	0.00	0.00	0.00	4.57
513	526	4.898861	GGGGGAATATTAGCACAAATTGGA	59.101	41.667	0.00	0.00	0.00	3.53
541	554	3.138098	TCCCTAAACTAAACAAACGGGGT	59.862	43.478	0.00	0.00	33.59	4.95
565	578	0.331278	CCCCAAATACAGAGGCACCA	59.669	55.000	0.00	0.00	0.00	4.17
569	582	0.324943	AAATACAGAGGCACCAGCGT	59.675	50.000	0.00	0.00	43.41	5.07
653	666	3.400054	GGGTTGCTAGGGAGGCGT	61.400	66.667	0.00	0.00	0.00	5.68
806	819	1.438399	CACAAGCAGCAGCAACCAA	59.562	52.632	3.17	0.00	45.49	3.67
809	822	0.103572	CAAGCAGCAGCAACCAAAGT	59.896	50.000	3.17	0.00	45.49	2.66
834	847	0.762082	AGGAGCAGCTATAGCCAGCA	60.762	55.000	30.12	0.00	44.35	4.41
835	848	0.107456	GGAGCAGCTATAGCCAGCAA	59.893	55.000	30.12	0.00	44.35	3.91
836	849	1.271271	GGAGCAGCTATAGCCAGCAAT	60.271	52.381	30.12	17.46	44.35	3.56
841	854	1.072965	AGCTATAGCCAGCAATGGGAC	59.927	52.381	21.17	0.00	44.35	4.46
945	961	2.363018	AGGCAGCGGAGTAGCAGA	60.363	61.111	0.00	0.00	40.15	4.26
959	975	2.982744	GCAGAAGCGGTTCAAGGGC	61.983	63.158	27.46	20.10	34.82	5.19
964	980	4.043200	GCGGTTCAAGGGCAGCAC	62.043	66.667	0.00	0.00	0.00	4.40
965	981	2.281761	CGGTTCAAGGGCAGCACT	60.282	61.111	0.00	0.00	0.00	4.40
1029	1045	2.964911	GGCGAGTGCTGATGACTAC	58.035	57.895	0.00	0.00	42.25	2.73
1048	1064	1.918868	CGACGACGGATGGAGACACA	61.919	60.000	0.00	0.00	38.55	3.72
1108	1124	2.027625	GGACGAGTTTGTGAGGGCG	61.028	63.158	0.00	0.00	0.00	6.13
1109	1125	1.300697	GACGAGTTTGTGAGGGCGT	60.301	57.895	0.00	0.00	34.39	5.68
1137	1153	3.838271	GAGGCGGCGGATCTGACA	61.838	66.667	9.78	0.00	0.00	3.58
1140	1156	2.434185	GCGGCGGATCTGACAACA	60.434	61.111	9.78	0.00	0.00	3.33
1145	1161	1.144969	GCGGATCTGACAACAAACGA	58.855	50.000	5.48	0.00	0.00	3.85
1150	1166	2.281140	TCTGACAACAAACGACGACA	57.719	45.000	0.00	0.00	0.00	4.35
1153	1169	0.928229	GACAACAAACGACGACAGCT	59.072	50.000	0.00	0.00	0.00	4.24
1155	1171	0.650512	CAACAAACGACGACAGCTGT	59.349	50.000	21.88	21.88	0.00	4.40
1178	1194	2.128507	GGGAAGACGGCTCGATCCT	61.129	63.158	7.42	0.00	32.11	3.24
1195	1211	2.966309	CTGAAGTTTGACGGCGCCC	61.966	63.158	23.46	8.57	0.00	6.13
1221	1237	1.639108	TGACCTGGTGCTAGTAGAGGA	59.361	52.381	2.82	0.00	0.00	3.71
1222	1238	2.025898	GACCTGGTGCTAGTAGAGGAC	58.974	57.143	2.82	3.48	45.47	3.85
1229	1245	1.476891	TGCTAGTAGAGGACAAAGGCG	59.523	52.381	0.00	0.00	0.00	5.52
1251	1267	1.666011	GCGTCAGTCTTCCTGGACA	59.334	57.895	0.00	0.00	41.83	4.02
1260	1276	0.393537	CTTCCTGGACATGCTCCCAC	60.394	60.000	0.00	0.00	38.49	4.61
1294	1345	0.174617	GGCTTCGTCTCCTCTTCCAG	59.825	60.000	0.00	0.00	0.00	3.86
1340	1391	2.271173	CGGGGGTCTAGGGTTTGC	59.729	66.667	0.00	0.00	0.00	3.68
1342	1393	2.235761	GGGGGTCTAGGGTTTGCCA	61.236	63.158	0.00	0.00	36.17	4.92
1343	1394	1.303282	GGGGTCTAGGGTTTGCCAG	59.697	63.158	0.00	0.00	36.17	4.85
1344	1395	1.303282	GGGTCTAGGGTTTGCCAGG	59.697	63.158	0.00	0.00	36.17	4.45
1345	1396	1.303282	GGTCTAGGGTTTGCCAGGG	59.697	63.158	0.00	0.00	36.17	4.45
1346	1397	1.205460	GGTCTAGGGTTTGCCAGGGA	61.205	60.000	0.00	0.00	36.17	4.20
1347	1398	0.253327	GTCTAGGGTTTGCCAGGGAG	59.747	60.000	0.00	0.00	36.17	4.30
1348	1399	0.178873	TCTAGGGTTTGCCAGGGAGT	60.179	55.000	0.00	0.00	36.17	3.85
1349	1400	0.035056	CTAGGGTTTGCCAGGGAGTG	60.035	60.000	0.00	0.00	36.17	3.51
1378	1429	3.681835	ATATCGACGCGGGGAGGC	61.682	66.667	12.47	0.00	0.00	4.70
1405	1456	3.025168	TGCACGACGTGTGGAAGATCT	62.025	52.381	27.32	0.00	46.80	2.75
1427	1478	2.174107	CGTGTACGAGCGAACGGA	59.826	61.111	0.00	0.00	43.02	4.69
1443	1494	2.066999	GGAGGCCACCGATCCTTCT	61.067	63.158	5.01	0.00	31.71	2.85
1469	1520	3.015327	ACAGAAGATTGAAGATGGCAGC	58.985	45.455	0.00	0.00	0.00	5.25
1733	1797	9.889128	ATTTAAATGGGATAAAAAGGTGATGTG	57.111	29.630	0.00	0.00	0.00	3.21
1771	1836	7.568199	AACATCCAGGGAAATTTTATAGTCG	57.432	36.000	0.00	0.00	0.00	4.18
1841	1909	7.442666	GCAACCTAACCCACATTTTTATTTTGA	59.557	33.333	0.00	0.00	0.00	2.69
1902	1970	8.996024	AAATTTGAATTCGAACGGGATTTAAT	57.004	26.923	10.38	0.00	0.00	1.40
2050	2122	2.293385	GGGGAGTAAGGGGGAAGTTCTA	60.293	54.545	2.25	0.00	0.00	2.10
2132	2205	6.652900	TCCATTACAACGACATCTTCATTTCA	59.347	34.615	0.00	0.00	0.00	2.69
2169	2242	3.140325	TGAAGAAGTCGGCATCCTTTT	57.860	42.857	0.00	0.00	0.00	2.27
2192	2265	5.531122	TTCGGGAACTCCATCATACTTAG	57.469	43.478	0.00	0.00	37.91	2.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	1.003580	CCCACATACCTGTCAGTTGCT	59.996	52.381	0.00	0.00	31.62	3.91
33	34	1.831736	GCTACCCACATACCTGTCAGT	59.168	52.381	0.00	0.00	31.62	3.41
102	103	4.092771	TCGACTGTAACTCGGATGAAAG	57.907	45.455	0.00	0.00	0.00	2.62
371	378	5.461616	GGTGGGACCCCCTATACTATTTCTA	60.462	48.000	8.45	0.00	45.70	2.10
423	431	7.200455	CACCCCTTTAAGTCAAACTGTTAAAG	58.800	38.462	0.00	6.78	40.85	1.85
432	442	5.391577	AACTACCACCCCTTTAAGTCAAA	57.608	39.130	0.00	0.00	0.00	2.69
541	554	1.200519	CCTCTGTATTTGGGGTCCGA	58.799	55.000	0.00	0.00	0.00	4.55
565	578	4.008933	GTGCCCAGTGAGGACGCT	62.009	66.667	0.00	0.00	41.22	5.07
569	582	4.314440	GTGCGTGCCCAGTGAGGA	62.314	66.667	0.00	0.00	41.22	3.71
640	653	3.449227	CGACACGCCTCCCTAGCA	61.449	66.667	0.00	0.00	0.00	3.49
644	657	3.382832	CCTTCGACACGCCTCCCT	61.383	66.667	0.00	0.00	0.00	4.20
693	706	3.327404	CCACTACCAACGGGCCCT	61.327	66.667	22.43	2.17	37.90	5.19
754	767	1.617839	CTCCTCCCTTCCCCTGCTT	60.618	63.158	0.00	0.00	0.00	3.91
782	795	0.321346	TGCTGCTGCTTGTGCTACTA	59.679	50.000	17.00	0.00	40.48	1.82
824	837	1.517238	TGGTCCCATTGCTGGCTATA	58.483	50.000	0.00	0.00	41.64	1.31
825	838	0.630673	TTGGTCCCATTGCTGGCTAT	59.369	50.000	0.00	0.00	41.64	2.97
834	847	1.770294	ACGTTGTTGTTGGTCCCATT	58.230	45.000	0.00	0.00	0.00	3.16
835	848	2.500229	CTACGTTGTTGTTGGTCCCAT	58.500	47.619	0.00	0.00	0.00	4.00
836	849	1.956297	CTACGTTGTTGTTGGTCCCA	58.044	50.000	0.00	0.00	0.00	4.37
841	854	1.082366	GCCGCTACGTTGTTGTTGG	60.082	57.895	0.00	0.00	0.00	3.77
937	953	1.338200	CCTTGAACCGCTTCTGCTACT	60.338	52.381	0.00	0.00	36.97	2.57
945	961	2.985847	GCTGCCCTTGAACCGCTT	60.986	61.111	0.00	0.00	0.00	4.68
976	992	2.431430	TGCTCAAGCTCTCGTGCG	60.431	61.111	3.32	0.00	42.66	5.34
1020	1036	1.329599	CATCCGTCGTCGTAGTCATCA	59.670	52.381	0.71	0.00	35.01	3.07
1029	1045	1.226323	GTGTCTCCATCCGTCGTCG	60.226	63.158	0.00	0.00	0.00	5.12
1089	1105	1.070786	GCCCTCACAAACTCGTCCA	59.929	57.895	0.00	0.00	0.00	4.02
1097	1113	2.429930	CTCCCACGCCCTCACAAA	59.570	61.111	0.00	0.00	0.00	2.83
1134	1150	0.928229	AGCTGTCGTCGTTTGTTGTC	59.072	50.000	0.00	0.00	0.00	3.18
1137	1153	0.650512	CACAGCTGTCGTCGTTTGTT	59.349	50.000	18.64	0.00	0.00	2.83
1140	1156	2.244651	GCCACAGCTGTCGTCGTTT	61.245	57.895	18.64	0.00	35.50	3.60
1150	1166	4.021925	GTCTTCCCCGCCACAGCT	62.022	66.667	0.00	0.00	36.60	4.24
1172	1188	0.721718	GCCGTCAAACTTCAGGATCG	59.278	55.000	0.00	0.00	0.00	3.69
1178	1194	2.975799	GGGCGCCGTCAAACTTCA	60.976	61.111	22.54	0.00	0.00	3.02
1195	1211	2.859273	CTAGCACCAGGTCAAGCCGG	62.859	65.000	0.00	0.00	43.70	6.13
1221	1237	1.961277	CTGACGCCTTCGCCTTTGT	60.961	57.895	0.00	0.00	39.84	2.83
1222	1238	1.901650	GACTGACGCCTTCGCCTTTG	61.902	60.000	0.00	0.00	39.84	2.77
1223	1239	1.668151	GACTGACGCCTTCGCCTTT	60.668	57.895	0.00	0.00	39.84	3.11
1238	1254	0.908198	GGAGCATGTCCAGGAAGACT	59.092	55.000	8.84	0.00	46.10	3.24
1270	1286	0.820871	AGAGGAGACGAAGCCATCAC	59.179	55.000	0.00	0.00	0.00	3.06
1271	1287	1.478510	GAAGAGGAGACGAAGCCATCA	59.521	52.381	0.00	0.00	0.00	3.07
1294	1345	0.040336	TTATCCGCTCGCACTCGATC	60.040	55.000	0.00	0.00	44.56	3.69
1307	1358	0.030369	CCCGGTTCTCTCGTTATCCG	59.970	60.000	0.00	0.00	38.05	4.18
1340	1391	3.011517	CACCCCCTCACTCCCTGG	61.012	72.222	0.00	0.00	0.00	4.45
1342	1393	3.933542	GAGCACCCCCTCACTCCCT	62.934	68.421	0.00	0.00	0.00	4.20
1343	1394	3.403558	GAGCACCCCCTCACTCCC	61.404	72.222	0.00	0.00	0.00	4.30
1344	1395	0.691078	TATGAGCACCCCCTCACTCC	60.691	60.000	0.00	0.00	44.00	3.85
1345	1396	1.346068	GATATGAGCACCCCCTCACTC	59.654	57.143	0.00	0.00	44.00	3.51
1346	1397	1.428869	GATATGAGCACCCCCTCACT	58.571	55.000	0.00	0.00	44.00	3.41
1347	1398	0.034059	CGATATGAGCACCCCCTCAC	59.966	60.000	0.00	0.00	44.00	3.51
1348	1399	0.105709	TCGATATGAGCACCCCCTCA	60.106	55.000	0.00	0.00	45.16	3.86
1349	1400	0.318762	GTCGATATGAGCACCCCCTC	59.681	60.000	0.00	0.00	0.00	4.30
1382	1433	1.626654	CTTCCACACGTCGTGCATCC	61.627	60.000	24.80	0.00	44.91	3.51
1389	1440	1.406219	CGCAGATCTTCCACACGTCG	61.406	60.000	0.00	0.00	0.00	5.12
1400	1451	2.102357	CGTACACGCCGCAGATCT	59.898	61.111	0.00	0.00	0.00	2.75
1427	1478	1.613630	ACAGAAGGATCGGTGGCCT	60.614	57.895	3.32	0.00	32.46	5.19
1443	1494	4.456911	GCCATCTTCAATCTTCTGTTCACA	59.543	41.667	0.00	0.00	0.00	3.58
1733	1797	3.492337	TGGATGTTAAAACAGTGGACCC	58.508	45.455	1.62	0.00	43.04	4.46
1806	1874	4.156922	TGTGGGTTAGGTTGCAAATATTCG	59.843	41.667	0.00	0.00	0.00	3.34
1902	1970	3.325870	ACTGTTTGAATCTCGCGATGAA	58.674	40.909	10.36	0.00	0.00	2.57
1916	1984	4.378356	CCATGTCACCACGATTACTGTTTG	60.378	45.833	0.00	0.00	0.00	2.93
2023	2092	0.646055	CCCCCTTACTCCCCCTCTTA	59.354	60.000	0.00	0.00	0.00	2.10
2080	2152	3.070018	CACTTCGAGAAGAGCAACCAAT	58.930	45.455	18.54	0.00	40.79	3.16
2117	2189	6.035435	CCTGAAGTAGTGAAATGAAGATGTCG	59.965	42.308	0.00	0.00	0.00	4.35
2132	2205	6.212388	ACTTCTTCATGATGACCTGAAGTAGT	59.788	38.462	23.70	14.76	44.86	2.73
2169	2242	4.837093	AAGTATGATGGAGTTCCCGAAA	57.163	40.909	0.00	0.00	37.93	3.46

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.