Multiple sequence alignment - TraesCS3A01G199200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G199200 chr3A 100.000 3082 0 0 1 3082 323384520 323387601 0.000000e+00 5692.0
1 TraesCS3A01G199200 chr3A 86.446 664 63 15 697 1350 486212140 486211494 0.000000e+00 702.0
2 TraesCS3A01G199200 chr3A 83.951 162 25 1 2921 3082 211185960 211186120 1.480000e-33 154.0
3 TraesCS3A01G199200 chr2D 94.898 2803 96 11 1 2771 348077556 348074769 0.000000e+00 4340.0
4 TraesCS3A01G199200 chr2D 94.643 56 3 0 763 818 348076856 348076801 1.520000e-13 87.9
5 TraesCS3A01G199200 chr3D 94.321 2800 100 9 1 2769 75768386 75765615 0.000000e+00 4235.0
6 TraesCS3A01G199200 chr1A 95.583 1834 62 2 1 1815 41411546 41413379 0.000000e+00 2920.0
7 TraesCS3A01G199200 chr1A 95.529 1834 63 2 1 1815 41320778 41318945 0.000000e+00 2915.0
8 TraesCS3A01G199200 chr1A 87.623 2133 169 48 1 2091 330763543 330761464 0.000000e+00 2388.0
9 TraesCS3A01G199200 chr1A 94.617 966 38 4 1813 2766 41288729 41287766 0.000000e+00 1483.0
10 TraesCS3A01G199200 chr4A 93.723 1179 48 9 922 2079 527576879 527575706 0.000000e+00 1744.0
11 TraesCS3A01G199200 chr4A 96.053 760 29 1 1 759 527577820 527577061 0.000000e+00 1236.0
12 TraesCS3A01G199200 chr4A 87.975 474 55 1 2295 2768 527575376 527574905 2.680000e-155 558.0
13 TraesCS3A01G199200 chr4A 82.156 269 35 8 1995 2257 527575755 527575494 5.170000e-53 219.0
14 TraesCS3A01G199200 chr2B 87.156 1308 117 30 975 2257 516099481 516100762 0.000000e+00 1437.0
15 TraesCS3A01G199200 chr2B 91.656 779 57 6 1480 2257 592572595 592573366 0.000000e+00 1072.0
16 TraesCS3A01G199200 chr2B 92.202 731 43 5 1 718 516098498 516099227 0.000000e+00 1022.0
17 TraesCS3A01G199200 chr2B 95.588 204 9 0 1 204 198531497 198531294 8.240000e-86 327.0
18 TraesCS3A01G199200 chr7A 90.043 934 70 16 1 929 219381518 219380603 0.000000e+00 1188.0
19 TraesCS3A01G199200 chr7A 91.346 416 33 2 972 1384 219380408 219379993 1.600000e-157 566.0
20 TraesCS3A01G199200 chr4B 89.816 923 60 11 1 912 369781771 369780872 0.000000e+00 1153.0
21 TraesCS3A01G199200 chr4B 92.987 385 27 0 972 1356 369780769 369780385 2.080000e-156 562.0
22 TraesCS3A01G199200 chr4B 91.163 215 18 1 1 215 367921187 367921400 1.080000e-74 291.0
23 TraesCS3A01G199200 chr6B 89.707 923 61 7 1 912 578015582 578016481 0.000000e+00 1147.0
24 TraesCS3A01G199200 chr6B 86.674 923 96 21 1344 2259 578017068 578017970 0.000000e+00 998.0
25 TraesCS3A01G199200 chr6B 91.084 415 35 1 972 1386 578016585 578016997 7.460000e-156 560.0
26 TraesCS3A01G199200 chr3B 87.257 926 91 20 1344 2262 52856663 52855758 0.000000e+00 1031.0
27 TraesCS3A01G199200 chr3B 94.637 317 16 1 212 527 52857253 52856937 9.930000e-135 490.0
28 TraesCS3A01G199200 chr3B 92.308 208 14 1 1177 1384 52856941 52856736 8.360000e-76 294.0
29 TraesCS3A01G199200 chr5D 89.744 741 63 8 1532 2266 51119761 51119028 0.000000e+00 935.0
30 TraesCS3A01G199200 chr5D 89.757 742 60 10 1532 2266 51157179 51156447 0.000000e+00 935.0
31 TraesCS3A01G199200 chr5D 89.439 748 57 13 1532 2266 51177683 51176945 0.000000e+00 924.0
32 TraesCS3A01G199200 chr5D 88.406 552 51 8 1720 2266 51196486 51195943 0.000000e+00 652.0
33 TraesCS3A01G199200 chr5D 88.679 477 50 3 2295 2770 51156338 51155865 2.060000e-161 579.0
34 TraesCS3A01G199200 chr5D 88.679 477 50 3 2295 2770 51176836 51176363 2.060000e-161 579.0
35 TraesCS3A01G199200 chr5D 88.470 477 51 3 2295 2770 51118919 51118446 9.590000e-160 573.0
36 TraesCS3A01G199200 chr5D 88.050 477 53 3 2295 2770 51195834 51195361 2.080000e-156 562.0
37 TraesCS3A01G199200 chr5D 87.192 203 24 2 2878 3080 327614808 327614608 2.390000e-56 230.0
38 TraesCS3A01G199200 chr5D 81.982 222 22 7 2167 2370 339303429 339303208 4.090000e-39 172.0
39 TraesCS3A01G199200 chr5D 79.570 186 28 7 2078 2257 339303571 339303390 1.160000e-24 124.0
40 TraesCS3A01G199200 chr5D 79.798 99 10 1 2167 2255 51119076 51118978 2.570000e-06 63.9
41 TraesCS3A01G199200 chr5D 79.798 99 10 1 2167 2255 51156495 51156397 2.570000e-06 63.9
42 TraesCS3A01G199200 chr5D 79.798 99 10 1 2167 2255 51176993 51176895 2.570000e-06 63.9
43 TraesCS3A01G199200 chrUn 92.060 466 30 4 2295 2760 79709302 79709760 0.000000e+00 649.0
44 TraesCS3A01G199200 chrUn 88.679 477 50 3 2295 2770 415625915 415625442 2.060000e-161 579.0
45 TraesCS3A01G199200 chrUn 91.163 215 18 1 1 215 214468860 214469073 1.080000e-74 291.0
46 TraesCS3A01G199200 chrUn 91.163 215 18 1 1 215 365510067 365509854 1.080000e-74 291.0
47 TraesCS3A01G199200 chrUn 91.176 136 10 2 859 993 79708960 79709094 1.890000e-42 183.0
48 TraesCS3A01G199200 chrUn 92.537 67 3 2 753 817 79708893 79708959 9.100000e-16 95.3
49 TraesCS3A01G199200 chrUn 87.302 63 8 0 2204 2266 415626086 415626024 4.260000e-09 73.1
50 TraesCS3A01G199200 chrUn 79.798 99 10 1 2167 2255 415626072 415625974 2.570000e-06 63.9
51 TraesCS3A01G199200 chr5B 91.845 466 31 4 2295 2760 60976653 60977111 0.000000e+00 643.0
52 TraesCS3A01G199200 chr5B 89.781 137 11 2 859 993 60976295 60976430 4.090000e-39 172.0
53 TraesCS3A01G199200 chr1B 94.118 221 11 2 922 1140 188444191 188444411 4.920000e-88 335.0
54 TraesCS3A01G199200 chr1D 88.793 232 23 3 2852 3082 48904083 48904312 6.510000e-72 281.0
55 TraesCS3A01G199200 chr7B 94.444 72 4 0 2786 2857 71621957 71621886 9.030000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G199200 chr3A 323384520 323387601 3081 False 5692.000000 5692 100.000000 1 3082 1 chr3A.!!$F2 3081
1 TraesCS3A01G199200 chr3A 486211494 486212140 646 True 702.000000 702 86.446000 697 1350 1 chr3A.!!$R1 653
2 TraesCS3A01G199200 chr2D 348074769 348077556 2787 True 2213.950000 4340 94.770500 1 2771 2 chr2D.!!$R1 2770
3 TraesCS3A01G199200 chr3D 75765615 75768386 2771 True 4235.000000 4235 94.321000 1 2769 1 chr3D.!!$R1 2768
4 TraesCS3A01G199200 chr1A 41411546 41413379 1833 False 2920.000000 2920 95.583000 1 1815 1 chr1A.!!$F1 1814
5 TraesCS3A01G199200 chr1A 41318945 41320778 1833 True 2915.000000 2915 95.529000 1 1815 1 chr1A.!!$R2 1814
6 TraesCS3A01G199200 chr1A 330761464 330763543 2079 True 2388.000000 2388 87.623000 1 2091 1 chr1A.!!$R3 2090
7 TraesCS3A01G199200 chr1A 41287766 41288729 963 True 1483.000000 1483 94.617000 1813 2766 1 chr1A.!!$R1 953
8 TraesCS3A01G199200 chr4A 527574905 527577820 2915 True 939.250000 1744 89.976750 1 2768 4 chr4A.!!$R1 2767
9 TraesCS3A01G199200 chr2B 516098498 516100762 2264 False 1229.500000 1437 89.679000 1 2257 2 chr2B.!!$F2 2256
10 TraesCS3A01G199200 chr2B 592572595 592573366 771 False 1072.000000 1072 91.656000 1480 2257 1 chr2B.!!$F1 777
11 TraesCS3A01G199200 chr7A 219379993 219381518 1525 True 877.000000 1188 90.694500 1 1384 2 chr7A.!!$R1 1383
12 TraesCS3A01G199200 chr4B 369780385 369781771 1386 True 857.500000 1153 91.401500 1 1356 2 chr4B.!!$R1 1355
13 TraesCS3A01G199200 chr6B 578015582 578017970 2388 False 901.666667 1147 89.155000 1 2259 3 chr6B.!!$F1 2258
14 TraesCS3A01G199200 chr3B 52855758 52857253 1495 True 605.000000 1031 91.400667 212 2262 3 chr3B.!!$R1 2050
15 TraesCS3A01G199200 chr5D 51195361 51196486 1125 True 607.000000 652 88.228000 1720 2770 2 chr5D.!!$R5 1050
16 TraesCS3A01G199200 chr5D 51155865 51157179 1314 True 525.966667 935 86.078000 1532 2770 3 chr5D.!!$R3 1238
17 TraesCS3A01G199200 chr5D 51118446 51119761 1315 True 523.966667 935 86.004000 1532 2770 3 chr5D.!!$R2 1238
18 TraesCS3A01G199200 chr5D 51176363 51177683 1320 True 522.300000 924 85.972000 1532 2770 3 chr5D.!!$R4 1238
19 TraesCS3A01G199200 chrUn 79708893 79709760 867 False 309.100000 649 91.924333 753 2760 3 chrUn.!!$F2 2007
20 TraesCS3A01G199200 chrUn 415625442 415626086 644 True 238.666667 579 85.259667 2167 2770 3 chrUn.!!$R2 603
21 TraesCS3A01G199200 chr5B 60976295 60977111 816 False 407.500000 643 90.813000 859 2760 2 chr5B.!!$F1 1901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 335 1.373570 GTGAGGCCAGGATTTCTTCG 58.626 55.0 5.01 0.0 0.00 3.79 F
1654 2148 0.461516 GCTACTGCTGCTGCTCATGA 60.462 55.0 17.00 0.0 40.48 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 2605 0.251341 ATTTGCTCACACTCCACCCC 60.251 55.0 0.0 0.0 0.00 4.95 R
2698 3358 0.038310 GAGCTTGGTTGGGGCTAGTT 59.962 55.0 0.0 0.0 36.37 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.832883 AAATGTGATGGCTGCGGTTA 58.167 45.000 0.00 0.00 0.00 2.85
318 335 1.373570 GTGAGGCCAGGATTTCTTCG 58.626 55.000 5.01 0.00 0.00 3.79
324 341 1.672881 GCCAGGATTTCTTCGACCATG 59.327 52.381 0.00 0.00 0.00 3.66
411 428 1.617947 AACCTCCGCCACTCCTCATC 61.618 60.000 0.00 0.00 0.00 2.92
573 590 3.515901 GGAGAGGATGAGTTTGTACCACT 59.484 47.826 0.00 0.00 0.00 4.00
660 677 5.762179 ACCTGGTCACAAATTAGAGATGA 57.238 39.130 0.00 0.00 0.00 2.92
721 738 4.320275 CGTGTGTAGAGCTCAAGTGTAGAA 60.320 45.833 17.77 0.00 0.00 2.10
1030 1382 2.510411 CGGCTGATGGTGGGCATA 59.490 61.111 0.00 0.00 0.00 3.14
1091 1445 0.997196 GGGTTCATGTTACGTCGCTC 59.003 55.000 0.00 0.00 0.00 5.03
1095 1449 2.717580 TCATGTTACGTCGCTCTGTT 57.282 45.000 0.00 0.00 0.00 3.16
1221 1578 1.133915 ACCCAAGTGTACAACCACCTG 60.134 52.381 0.00 0.00 35.93 4.00
1300 1657 7.990886 GGTCACTTTGGGATGATAACAACTATA 59.009 37.037 0.00 0.00 0.00 1.31
1370 1792 5.365021 ACTAGCTTTTAGTGGCTGATCAT 57.635 39.130 0.00 0.00 39.31 2.45
1463 1939 7.398024 AGTACCTCAATGTGCTTTTAGAGAAT 58.602 34.615 0.00 0.00 0.00 2.40
1464 1940 7.885399 AGTACCTCAATGTGCTTTTAGAGAATT 59.115 33.333 0.00 0.00 0.00 2.17
1465 1941 9.162764 GTACCTCAATGTGCTTTTAGAGAATTA 57.837 33.333 0.00 0.00 0.00 1.40
1466 1942 8.814038 ACCTCAATGTGCTTTTAGAGAATTAT 57.186 30.769 0.00 0.00 0.00 1.28
1467 1943 8.680903 ACCTCAATGTGCTTTTAGAGAATTATG 58.319 33.333 0.00 0.00 0.00 1.90
1468 1944 8.680903 CCTCAATGTGCTTTTAGAGAATTATGT 58.319 33.333 0.00 0.00 0.00 2.29
1471 1947 9.844790 CAATGTGCTTTTAGAGAATTATGTTCA 57.155 29.630 0.00 0.00 0.00 3.18
1473 1949 8.846943 TGTGCTTTTAGAGAATTATGTTCAGA 57.153 30.769 0.00 0.00 0.00 3.27
1474 1950 9.453572 TGTGCTTTTAGAGAATTATGTTCAGAT 57.546 29.630 0.00 0.00 0.00 2.90
1475 1951 9.713740 GTGCTTTTAGAGAATTATGTTCAGATG 57.286 33.333 0.00 0.00 0.00 2.90
1476 1952 8.400947 TGCTTTTAGAGAATTATGTTCAGATGC 58.599 33.333 0.00 0.00 0.00 3.91
1477 1953 8.619546 GCTTTTAGAGAATTATGTTCAGATGCT 58.380 33.333 0.00 0.00 0.00 3.79
1654 2148 0.461516 GCTACTGCTGCTGCTCATGA 60.462 55.000 17.00 0.00 40.48 3.07
1801 2302 3.067106 CAGTCCGTGAAGTTGCTATTGT 58.933 45.455 0.00 0.00 0.00 2.71
1903 2404 8.253810 TCTGTTAATTGTCTTGGACTATCTCAG 58.746 37.037 0.00 6.88 33.15 3.35
1980 2481 0.603707 CACTCGTTGGGTCATGCACT 60.604 55.000 0.00 0.00 0.00 4.40
2068 2605 0.606401 ACCAACGATGAAGTGCCCAG 60.606 55.000 0.00 0.00 0.00 4.45
2092 2629 3.758554 GGTGGAGTGTGAGCAAATATGTT 59.241 43.478 0.00 0.00 0.00 2.71
2148 2694 4.105697 ACTTGGTCAGAAAAACTATCCCCA 59.894 41.667 0.00 0.00 0.00 4.96
2222 2778 5.978814 ACTCTGGACTGTAATATGAACCAC 58.021 41.667 0.00 0.00 0.00 4.16
2545 3205 6.494491 TCAATCACCCTTGAGTCAAATTTCAT 59.506 34.615 7.06 0.00 34.35 2.57
2628 3288 4.032786 GCAACACACCAAACAAAATCTGAC 59.967 41.667 0.00 0.00 0.00 3.51
2637 3297 4.640771 AACAAAATCTGACCTGAGCCTA 57.359 40.909 0.00 0.00 0.00 3.93
2698 3358 3.030291 AGTTTTGCATGAGGTCAACCAA 58.970 40.909 0.00 0.00 38.89 3.67
2699 3359 3.450457 AGTTTTGCATGAGGTCAACCAAA 59.550 39.130 0.00 4.99 38.89 3.28
2761 3421 2.124693 CCCAGGCAACCAAACACGT 61.125 57.895 0.00 0.00 37.17 4.49
2805 3465 5.254339 ACCGAAAATACTAGACTTACGGG 57.746 43.478 19.63 9.07 41.68 5.28
2806 3466 4.047142 CCGAAAATACTAGACTTACGGGC 58.953 47.826 0.00 0.00 35.24 6.13
2807 3467 3.727723 CGAAAATACTAGACTTACGGGCG 59.272 47.826 0.00 0.00 0.00 6.13
2808 3468 4.496341 CGAAAATACTAGACTTACGGGCGA 60.496 45.833 0.00 0.00 0.00 5.54
2809 3469 4.564940 AAATACTAGACTTACGGGCGAG 57.435 45.455 0.00 0.00 0.00 5.03
2810 3470 2.698855 TACTAGACTTACGGGCGAGT 57.301 50.000 0.00 0.00 41.72 4.18
2811 3471 1.831580 ACTAGACTTACGGGCGAGTT 58.168 50.000 0.00 0.00 35.32 3.01
2812 3472 1.471684 ACTAGACTTACGGGCGAGTTG 59.528 52.381 0.00 0.00 35.32 3.16
2813 3473 0.813184 TAGACTTACGGGCGAGTTGG 59.187 55.000 0.00 0.00 0.00 3.77
2814 3474 2.047560 ACTTACGGGCGAGTTGGC 60.048 61.111 0.00 0.00 43.88 4.52
2822 3482 3.423154 GCGAGTTGGCACGGGAAG 61.423 66.667 0.00 0.00 0.00 3.46
2823 3483 2.342279 CGAGTTGGCACGGGAAGA 59.658 61.111 0.00 0.00 0.00 2.87
2824 3484 1.301401 CGAGTTGGCACGGGAAGAA 60.301 57.895 0.00 0.00 0.00 2.52
2825 3485 0.882927 CGAGTTGGCACGGGAAGAAA 60.883 55.000 0.00 0.00 0.00 2.52
2826 3486 0.875059 GAGTTGGCACGGGAAGAAAG 59.125 55.000 0.00 0.00 0.00 2.62
2827 3487 0.182775 AGTTGGCACGGGAAGAAAGT 59.817 50.000 0.00 0.00 0.00 2.66
2828 3488 1.029681 GTTGGCACGGGAAGAAAGTT 58.970 50.000 0.00 0.00 0.00 2.66
2829 3489 2.158726 AGTTGGCACGGGAAGAAAGTTA 60.159 45.455 0.00 0.00 0.00 2.24
2830 3490 1.886886 TGGCACGGGAAGAAAGTTAC 58.113 50.000 0.00 0.00 0.00 2.50
2831 3491 1.141254 TGGCACGGGAAGAAAGTTACA 59.859 47.619 0.00 0.00 0.00 2.41
2832 3492 1.804748 GGCACGGGAAGAAAGTTACAG 59.195 52.381 0.00 0.00 0.00 2.74
2833 3493 2.549349 GGCACGGGAAGAAAGTTACAGA 60.549 50.000 0.00 0.00 0.00 3.41
2834 3494 2.479275 GCACGGGAAGAAAGTTACAGAC 59.521 50.000 0.00 0.00 0.00 3.51
2835 3495 2.729882 CACGGGAAGAAAGTTACAGACG 59.270 50.000 0.00 0.00 0.00 4.18
2836 3496 2.363359 ACGGGAAGAAAGTTACAGACGT 59.637 45.455 0.00 0.00 0.00 4.34
2837 3497 3.569701 ACGGGAAGAAAGTTACAGACGTA 59.430 43.478 0.00 0.00 0.00 3.57
2838 3498 3.916776 CGGGAAGAAAGTTACAGACGTAC 59.083 47.826 0.00 0.00 0.00 3.67
2839 3499 4.240888 GGGAAGAAAGTTACAGACGTACC 58.759 47.826 0.00 0.00 0.00 3.34
2840 3500 4.021632 GGGAAGAAAGTTACAGACGTACCT 60.022 45.833 0.00 0.00 0.00 3.08
2841 3501 4.922103 GGAAGAAAGTTACAGACGTACCTG 59.078 45.833 2.88 2.88 39.93 4.00
2843 3503 5.118642 AGAAAGTTACAGACGTACCTGTC 57.881 43.478 12.69 0.82 45.37 3.51
2845 3505 5.301298 AGAAAGTTACAGACGTACCTGTCTT 59.699 40.000 12.69 8.79 46.85 3.01
2846 3506 4.762956 AGTTACAGACGTACCTGTCTTC 57.237 45.455 12.69 5.94 46.85 2.87
2847 3507 4.396522 AGTTACAGACGTACCTGTCTTCT 58.603 43.478 12.69 7.76 46.85 2.85
2848 3508 4.826183 AGTTACAGACGTACCTGTCTTCTT 59.174 41.667 12.69 0.00 46.85 2.52
2849 3509 5.301298 AGTTACAGACGTACCTGTCTTCTTT 59.699 40.000 12.69 0.00 46.85 2.52
2850 3510 4.240175 ACAGACGTACCTGTCTTCTTTC 57.760 45.455 4.17 0.00 46.85 2.62
2851 3511 3.635373 ACAGACGTACCTGTCTTCTTTCA 59.365 43.478 4.17 0.00 46.85 2.69
2852 3512 4.230657 CAGACGTACCTGTCTTCTTTCAG 58.769 47.826 1.10 0.00 46.85 3.02
2853 3513 3.890147 AGACGTACCTGTCTTCTTTCAGT 59.110 43.478 0.00 0.00 46.85 3.41
2854 3514 4.341520 AGACGTACCTGTCTTCTTTCAGTT 59.658 41.667 0.00 0.00 46.85 3.16
2855 3515 5.533903 AGACGTACCTGTCTTCTTTCAGTTA 59.466 40.000 0.00 0.00 46.85 2.24
2856 3516 6.040166 AGACGTACCTGTCTTCTTTCAGTTAA 59.960 38.462 0.00 0.00 46.85 2.01
2857 3517 6.214399 ACGTACCTGTCTTCTTTCAGTTAAG 58.786 40.000 0.00 0.00 0.00 1.85
2858 3518 5.634020 CGTACCTGTCTTCTTTCAGTTAAGG 59.366 44.000 0.00 0.00 0.00 2.69
2859 3519 5.632034 ACCTGTCTTCTTTCAGTTAAGGT 57.368 39.130 0.00 0.00 0.00 3.50
2860 3520 5.368989 ACCTGTCTTCTTTCAGTTAAGGTG 58.631 41.667 0.00 0.00 34.30 4.00
2861 3521 4.214332 CCTGTCTTCTTTCAGTTAAGGTGC 59.786 45.833 0.00 0.00 0.00 5.01
2862 3522 4.134563 TGTCTTCTTTCAGTTAAGGTGCC 58.865 43.478 0.00 0.00 0.00 5.01
2863 3523 4.141482 TGTCTTCTTTCAGTTAAGGTGCCT 60.141 41.667 0.00 0.00 0.00 4.75
2864 3524 4.214332 GTCTTCTTTCAGTTAAGGTGCCTG 59.786 45.833 0.00 0.00 0.00 4.85
2865 3525 2.504367 TCTTTCAGTTAAGGTGCCTGC 58.496 47.619 0.00 0.00 0.00 4.85
2866 3526 2.106511 TCTTTCAGTTAAGGTGCCTGCT 59.893 45.455 0.00 0.00 0.00 4.24
2867 3527 3.326588 TCTTTCAGTTAAGGTGCCTGCTA 59.673 43.478 0.00 0.00 0.00 3.49
2868 3528 2.762535 TCAGTTAAGGTGCCTGCTAC 57.237 50.000 0.00 0.00 0.00 3.58
2869 3529 1.974957 TCAGTTAAGGTGCCTGCTACA 59.025 47.619 0.00 0.00 0.00 2.74
2870 3530 2.370519 TCAGTTAAGGTGCCTGCTACAA 59.629 45.455 0.00 0.00 0.00 2.41
2871 3531 3.146066 CAGTTAAGGTGCCTGCTACAAA 58.854 45.455 0.00 0.00 0.00 2.83
2872 3532 3.758554 CAGTTAAGGTGCCTGCTACAAAT 59.241 43.478 0.00 0.00 0.00 2.32
2873 3533 4.010349 AGTTAAGGTGCCTGCTACAAATC 58.990 43.478 0.00 0.00 0.00 2.17
2874 3534 2.584835 AAGGTGCCTGCTACAAATCA 57.415 45.000 0.00 0.00 0.00 2.57
2875 3535 2.119801 AGGTGCCTGCTACAAATCAG 57.880 50.000 0.00 0.00 0.00 2.90
2879 3539 2.397751 CCTGCTACAAATCAGGCGG 58.602 57.895 0.00 0.00 42.79 6.13
2880 3540 1.718757 CCTGCTACAAATCAGGCGGC 61.719 60.000 0.00 0.00 42.79 6.53
2881 3541 0.745845 CTGCTACAAATCAGGCGGCT 60.746 55.000 5.25 5.25 0.00 5.52
2882 3542 1.026182 TGCTACAAATCAGGCGGCTG 61.026 55.000 31.58 31.58 0.00 4.85
2883 3543 0.744414 GCTACAAATCAGGCGGCTGA 60.744 55.000 39.24 39.24 37.79 4.26
2884 3544 1.959042 CTACAAATCAGGCGGCTGAT 58.041 50.000 39.87 39.87 45.06 2.90
2889 3549 3.271250 ATCAGGCGGCTGATTTTGT 57.729 47.368 39.87 24.49 40.83 2.83
2890 3550 1.098050 ATCAGGCGGCTGATTTTGTC 58.902 50.000 39.87 0.00 40.83 3.18
2891 3551 0.960364 TCAGGCGGCTGATTTTGTCC 60.960 55.000 35.14 0.00 0.00 4.02
2892 3552 1.074775 AGGCGGCTGATTTTGTCCA 59.925 52.632 12.25 0.00 0.00 4.02
2893 3553 0.539438 AGGCGGCTGATTTTGTCCAA 60.539 50.000 12.25 0.00 0.00 3.53
2894 3554 0.109132 GGCGGCTGATTTTGTCCAAG 60.109 55.000 0.00 0.00 0.00 3.61
2895 3555 0.598065 GCGGCTGATTTTGTCCAAGT 59.402 50.000 0.00 0.00 0.00 3.16
2896 3556 1.000274 GCGGCTGATTTTGTCCAAGTT 60.000 47.619 0.00 0.00 0.00 2.66
2897 3557 2.545742 GCGGCTGATTTTGTCCAAGTTT 60.546 45.455 0.00 0.00 0.00 2.66
2898 3558 3.305064 GCGGCTGATTTTGTCCAAGTTTA 60.305 43.478 0.00 0.00 0.00 2.01
2899 3559 4.794655 GCGGCTGATTTTGTCCAAGTTTAA 60.795 41.667 0.00 0.00 0.00 1.52
2900 3560 4.917415 CGGCTGATTTTGTCCAAGTTTAAG 59.083 41.667 0.00 0.00 0.00 1.85
2901 3561 4.686091 GGCTGATTTTGTCCAAGTTTAAGC 59.314 41.667 0.00 0.00 0.00 3.09
2902 3562 4.686091 GCTGATTTTGTCCAAGTTTAAGCC 59.314 41.667 0.00 0.00 0.00 4.35
2903 3563 4.865776 TGATTTTGTCCAAGTTTAAGCCG 58.134 39.130 0.00 0.00 0.00 5.52
2904 3564 2.785713 TTTGTCCAAGTTTAAGCCGC 57.214 45.000 0.00 0.00 0.00 6.53
2905 3565 0.955905 TTGTCCAAGTTTAAGCCGCC 59.044 50.000 0.00 0.00 0.00 6.13
2906 3566 0.109723 TGTCCAAGTTTAAGCCGCCT 59.890 50.000 0.00 0.00 0.00 5.52
2907 3567 1.348366 TGTCCAAGTTTAAGCCGCCTA 59.652 47.619 0.00 0.00 0.00 3.93
2908 3568 2.007608 GTCCAAGTTTAAGCCGCCTAG 58.992 52.381 0.00 0.00 0.00 3.02
2909 3569 0.733150 CCAAGTTTAAGCCGCCTAGC 59.267 55.000 0.00 0.00 0.00 3.42
2910 3570 0.733150 CAAGTTTAAGCCGCCTAGCC 59.267 55.000 0.00 0.00 0.00 3.93
2911 3571 0.618981 AAGTTTAAGCCGCCTAGCCT 59.381 50.000 0.00 0.00 0.00 4.58
2912 3572 0.107654 AGTTTAAGCCGCCTAGCCTG 60.108 55.000 0.00 0.00 0.00 4.85
2913 3573 1.451387 TTTAAGCCGCCTAGCCTGC 60.451 57.895 0.00 0.00 0.00 4.85
2914 3574 2.886730 TTTAAGCCGCCTAGCCTGCC 62.887 60.000 0.00 0.00 0.00 4.85
2920 3580 4.143333 GCCTAGCCTGCCGTCGAA 62.143 66.667 0.00 0.00 0.00 3.71
2921 3581 2.815308 CCTAGCCTGCCGTCGAAT 59.185 61.111 0.00 0.00 0.00 3.34
2922 3582 1.144057 CCTAGCCTGCCGTCGAATT 59.856 57.895 0.00 0.00 0.00 2.17
2923 3583 0.876342 CCTAGCCTGCCGTCGAATTC 60.876 60.000 0.00 0.00 0.00 2.17
2924 3584 0.179111 CTAGCCTGCCGTCGAATTCA 60.179 55.000 6.22 0.00 0.00 2.57
2925 3585 0.459585 TAGCCTGCCGTCGAATTCAC 60.460 55.000 6.22 2.43 0.00 3.18
2926 3586 1.741770 GCCTGCCGTCGAATTCACT 60.742 57.895 6.22 0.00 0.00 3.41
2927 3587 1.696832 GCCTGCCGTCGAATTCACTC 61.697 60.000 6.22 0.00 0.00 3.51
2928 3588 0.389817 CCTGCCGTCGAATTCACTCA 60.390 55.000 6.22 3.81 0.00 3.41
2929 3589 1.428448 CTGCCGTCGAATTCACTCAA 58.572 50.000 6.22 0.00 0.00 3.02
2930 3590 1.126846 CTGCCGTCGAATTCACTCAAC 59.873 52.381 6.22 0.00 0.00 3.18
2931 3591 1.270094 TGCCGTCGAATTCACTCAACT 60.270 47.619 6.22 0.00 0.00 3.16
2932 3592 1.126846 GCCGTCGAATTCACTCAACTG 59.873 52.381 6.22 0.00 0.00 3.16
2933 3593 1.726791 CCGTCGAATTCACTCAACTGG 59.273 52.381 6.22 0.00 0.00 4.00
2934 3594 1.726791 CGTCGAATTCACTCAACTGGG 59.273 52.381 6.22 0.00 0.00 4.45
2935 3595 2.609491 CGTCGAATTCACTCAACTGGGA 60.609 50.000 6.22 0.00 0.00 4.37
2936 3596 3.600388 GTCGAATTCACTCAACTGGGAT 58.400 45.455 6.22 0.00 0.00 3.85
2937 3597 3.372206 GTCGAATTCACTCAACTGGGATG 59.628 47.826 6.22 0.00 0.00 3.51
2938 3598 2.679837 CGAATTCACTCAACTGGGATGG 59.320 50.000 6.22 0.00 0.00 3.51
2939 3599 3.619733 CGAATTCACTCAACTGGGATGGA 60.620 47.826 6.22 0.00 0.00 3.41
2940 3600 4.530875 GAATTCACTCAACTGGGATGGAT 58.469 43.478 0.00 0.00 0.00 3.41
2941 3601 4.598036 ATTCACTCAACTGGGATGGATT 57.402 40.909 0.00 0.00 0.00 3.01
2942 3602 5.715439 ATTCACTCAACTGGGATGGATTA 57.285 39.130 0.00 0.00 0.00 1.75
2943 3603 4.760530 TCACTCAACTGGGATGGATTAG 57.239 45.455 0.00 0.00 0.00 1.73
2944 3604 3.455910 TCACTCAACTGGGATGGATTAGG 59.544 47.826 0.00 0.00 0.00 2.69
2945 3605 2.780010 ACTCAACTGGGATGGATTAGGG 59.220 50.000 0.00 0.00 0.00 3.53
2946 3606 1.494721 TCAACTGGGATGGATTAGGGC 59.505 52.381 0.00 0.00 0.00 5.19
2947 3607 0.853530 AACTGGGATGGATTAGGGCC 59.146 55.000 0.00 0.00 0.00 5.80
2948 3608 1.376466 CTGGGATGGATTAGGGCCG 59.624 63.158 0.00 0.00 0.00 6.13
2949 3609 2.034221 GGGATGGATTAGGGCCGC 59.966 66.667 0.00 0.00 0.00 6.53
2950 3610 2.358737 GGATGGATTAGGGCCGCG 60.359 66.667 0.00 0.00 0.00 6.46
2951 3611 3.050275 GATGGATTAGGGCCGCGC 61.050 66.667 0.00 0.00 0.00 6.86
2952 3612 4.988598 ATGGATTAGGGCCGCGCG 62.989 66.667 25.67 25.67 0.00 6.86
2954 3614 4.681978 GGATTAGGGCCGCGCGAT 62.682 66.667 34.63 16.19 0.00 4.58
2955 3615 2.665185 GATTAGGGCCGCGCGATT 60.665 61.111 34.63 15.64 0.00 3.34
2956 3616 2.665185 ATTAGGGCCGCGCGATTC 60.665 61.111 34.63 19.29 0.00 2.52
2957 3617 4.903010 TTAGGGCCGCGCGATTCC 62.903 66.667 34.63 26.99 0.00 3.01
2963 3623 4.207281 CCGCGCGATTCCTCCTCA 62.207 66.667 34.63 0.00 0.00 3.86
2964 3624 2.202743 CGCGCGATTCCTCCTCAA 60.203 61.111 28.94 0.00 0.00 3.02
2965 3625 1.592669 CGCGCGATTCCTCCTCAAT 60.593 57.895 28.94 0.00 0.00 2.57
2966 3626 1.552348 CGCGCGATTCCTCCTCAATC 61.552 60.000 28.94 0.00 0.00 2.67
2967 3627 0.530650 GCGCGATTCCTCCTCAATCA 60.531 55.000 12.10 0.00 31.53 2.57
2968 3628 1.875576 GCGCGATTCCTCCTCAATCAT 60.876 52.381 12.10 0.00 31.53 2.45
2969 3629 2.064762 CGCGATTCCTCCTCAATCATC 58.935 52.381 0.00 0.00 31.53 2.92
2970 3630 2.064762 GCGATTCCTCCTCAATCATCG 58.935 52.381 0.00 0.00 37.24 3.84
2971 3631 2.064762 CGATTCCTCCTCAATCATCGC 58.935 52.381 0.00 0.00 31.53 4.58
2972 3632 2.288702 CGATTCCTCCTCAATCATCGCT 60.289 50.000 0.00 0.00 31.53 4.93
2973 3633 3.737850 GATTCCTCCTCAATCATCGCTT 58.262 45.455 0.00 0.00 31.53 4.68
2974 3634 2.898729 TCCTCCTCAATCATCGCTTC 57.101 50.000 0.00 0.00 0.00 3.86
2975 3635 1.414181 TCCTCCTCAATCATCGCTTCC 59.586 52.381 0.00 0.00 0.00 3.46
2976 3636 1.139654 CCTCCTCAATCATCGCTTCCA 59.860 52.381 0.00 0.00 0.00 3.53
2977 3637 2.224475 CCTCCTCAATCATCGCTTCCAT 60.224 50.000 0.00 0.00 0.00 3.41
2978 3638 3.065655 CTCCTCAATCATCGCTTCCATC 58.934 50.000 0.00 0.00 0.00 3.51
2979 3639 2.702478 TCCTCAATCATCGCTTCCATCT 59.298 45.455 0.00 0.00 0.00 2.90
2980 3640 2.806818 CCTCAATCATCGCTTCCATCTG 59.193 50.000 0.00 0.00 0.00 2.90
2981 3641 3.464907 CTCAATCATCGCTTCCATCTGT 58.535 45.455 0.00 0.00 0.00 3.41
2982 3642 3.200483 TCAATCATCGCTTCCATCTGTG 58.800 45.455 0.00 0.00 0.00 3.66
2984 3644 0.178767 TCATCGCTTCCATCTGTGGG 59.821 55.000 0.00 0.00 46.06 4.61
2985 3645 0.107508 CATCGCTTCCATCTGTGGGT 60.108 55.000 0.00 0.00 46.06 4.51
2986 3646 0.179000 ATCGCTTCCATCTGTGGGTC 59.821 55.000 0.00 0.00 46.06 4.46
2987 3647 1.191489 TCGCTTCCATCTGTGGGTCA 61.191 55.000 0.00 0.00 46.06 4.02
2988 3648 1.021390 CGCTTCCATCTGTGGGTCAC 61.021 60.000 0.00 0.00 46.06 3.67
2989 3649 1.021390 GCTTCCATCTGTGGGTCACG 61.021 60.000 0.00 0.00 46.06 4.35
2990 3650 1.003839 TTCCATCTGTGGGTCACGC 60.004 57.895 0.00 0.00 46.06 5.34
2991 3651 1.763546 TTCCATCTGTGGGTCACGCA 61.764 55.000 0.00 0.00 46.06 5.24
2992 3652 1.078214 CCATCTGTGGGTCACGCAT 60.078 57.895 0.00 0.00 42.11 4.73
2993 3653 1.091771 CCATCTGTGGGTCACGCATC 61.092 60.000 0.00 0.00 42.11 3.91
2994 3654 1.153568 ATCTGTGGGTCACGCATCG 60.154 57.895 0.00 0.00 39.21 3.84
2995 3655 1.888436 ATCTGTGGGTCACGCATCGT 61.888 55.000 0.00 0.00 42.36 3.73
2996 3656 1.214325 CTGTGGGTCACGCATCGTA 59.786 57.895 0.00 0.00 38.32 3.43
2997 3657 0.802222 CTGTGGGTCACGCATCGTAG 60.802 60.000 0.00 0.00 38.32 3.51
2998 3658 2.165301 GTGGGTCACGCATCGTAGC 61.165 63.158 0.00 0.00 38.32 3.58
2999 3659 2.348104 TGGGTCACGCATCGTAGCT 61.348 57.895 0.00 0.00 38.32 3.32
3000 3660 1.153628 GGGTCACGCATCGTAGCTT 60.154 57.895 0.00 0.00 38.32 3.74
3001 3661 0.739813 GGGTCACGCATCGTAGCTTT 60.740 55.000 0.00 0.00 38.32 3.51
3002 3662 1.076332 GGTCACGCATCGTAGCTTTT 58.924 50.000 0.00 0.00 38.32 2.27
3003 3663 1.201921 GGTCACGCATCGTAGCTTTTG 60.202 52.381 0.00 0.00 38.32 2.44
3004 3664 1.459592 GTCACGCATCGTAGCTTTTGT 59.540 47.619 0.00 0.00 38.32 2.83
3005 3665 1.459209 TCACGCATCGTAGCTTTTGTG 59.541 47.619 0.00 0.00 38.32 3.33
3006 3666 0.796312 ACGCATCGTAGCTTTTGTGG 59.204 50.000 0.00 0.00 38.73 4.17
3007 3667 1.075542 CGCATCGTAGCTTTTGTGGA 58.924 50.000 0.00 0.00 0.00 4.02
3008 3668 1.201921 CGCATCGTAGCTTTTGTGGAC 60.202 52.381 0.00 0.00 0.00 4.02
3009 3669 1.201921 GCATCGTAGCTTTTGTGGACG 60.202 52.381 0.00 0.00 34.90 4.79
3010 3670 1.393539 CATCGTAGCTTTTGTGGACGG 59.606 52.381 0.00 0.00 34.38 4.79
3011 3671 0.947180 TCGTAGCTTTTGTGGACGGC 60.947 55.000 0.00 0.00 34.38 5.68
3012 3672 1.495951 GTAGCTTTTGTGGACGGCG 59.504 57.895 4.80 4.80 0.00 6.46
3013 3673 0.947180 GTAGCTTTTGTGGACGGCGA 60.947 55.000 16.62 0.00 0.00 5.54
3014 3674 0.669318 TAGCTTTTGTGGACGGCGAG 60.669 55.000 16.62 0.00 0.00 5.03
3015 3675 2.556287 CTTTTGTGGACGGCGAGC 59.444 61.111 16.62 4.71 0.00 5.03
3016 3676 2.203084 TTTTGTGGACGGCGAGCA 60.203 55.556 16.62 3.45 0.00 4.26
3017 3677 2.175184 CTTTTGTGGACGGCGAGCAG 62.175 60.000 16.62 0.00 0.00 4.24
3028 3688 2.513204 CGAGCAGCACCAGGGATG 60.513 66.667 0.00 0.00 0.00 3.51
3029 3689 2.124403 GAGCAGCACCAGGGATGG 60.124 66.667 0.00 0.00 0.00 3.51
3030 3690 3.711059 GAGCAGCACCAGGGATGGG 62.711 68.421 0.00 0.00 0.00 4.00
3031 3691 4.828296 GCAGCACCAGGGATGGGG 62.828 72.222 0.00 0.00 34.88 4.96
3032 3692 3.341629 CAGCACCAGGGATGGGGT 61.342 66.667 0.00 0.00 38.10 4.95
3033 3693 3.017581 AGCACCAGGGATGGGGTC 61.018 66.667 0.00 0.00 34.45 4.46
3034 3694 3.338250 GCACCAGGGATGGGGTCA 61.338 66.667 0.00 0.00 34.45 4.02
3035 3695 2.917897 GCACCAGGGATGGGGTCAA 61.918 63.158 0.00 0.00 34.45 3.18
3036 3696 1.000896 CACCAGGGATGGGGTCAAC 60.001 63.158 0.00 0.00 34.45 3.18
3037 3697 2.272146 CCAGGGATGGGGTCAACG 59.728 66.667 0.00 0.00 0.00 4.10
3038 3698 2.438434 CAGGGATGGGGTCAACGC 60.438 66.667 0.00 0.00 0.00 4.84
3039 3699 2.610859 AGGGATGGGGTCAACGCT 60.611 61.111 0.00 0.00 34.90 5.07
3040 3700 2.124695 GGGATGGGGTCAACGCTC 60.125 66.667 0.00 0.00 0.00 5.03
3041 3701 2.124695 GGATGGGGTCAACGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
3042 3702 2.668632 GATGGGGTCAACGCTCCA 59.331 61.111 0.00 0.00 0.00 3.86
3043 3703 1.450312 GATGGGGTCAACGCTCCAG 60.450 63.158 0.00 0.00 32.30 3.86
3044 3704 3.628646 ATGGGGTCAACGCTCCAGC 62.629 63.158 0.00 0.00 32.30 4.85
3054 3714 2.889503 GCTCCAGCGCTGCTACAG 60.890 66.667 31.96 22.34 36.40 2.74
3055 3715 2.888111 CTCCAGCGCTGCTACAGA 59.112 61.111 31.96 20.89 36.40 3.41
3056 3716 1.226916 CTCCAGCGCTGCTACAGAG 60.227 63.158 31.96 25.64 36.40 3.35
3057 3717 1.943116 CTCCAGCGCTGCTACAGAGT 61.943 60.000 31.96 0.00 36.40 3.24
3058 3718 0.679960 TCCAGCGCTGCTACAGAGTA 60.680 55.000 31.96 4.87 36.40 2.59
3059 3719 0.387202 CCAGCGCTGCTACAGAGTAT 59.613 55.000 31.96 0.00 36.40 2.12
3060 3720 1.485397 CAGCGCTGCTACAGAGTATG 58.515 55.000 26.68 0.00 36.40 2.39
3061 3721 1.066152 CAGCGCTGCTACAGAGTATGA 59.934 52.381 26.68 0.00 36.40 2.15
3062 3722 1.336440 AGCGCTGCTACAGAGTATGAG 59.664 52.381 10.39 0.00 36.99 2.90
3063 3723 1.335182 GCGCTGCTACAGAGTATGAGA 59.665 52.381 0.00 0.00 33.92 3.27
3064 3724 2.223595 GCGCTGCTACAGAGTATGAGAA 60.224 50.000 0.00 0.00 33.92 2.87
3065 3725 3.735208 GCGCTGCTACAGAGTATGAGAAA 60.735 47.826 0.00 0.00 33.92 2.52
3066 3726 3.794028 CGCTGCTACAGAGTATGAGAAAC 59.206 47.826 0.00 0.00 32.44 2.78
3067 3727 4.675408 CGCTGCTACAGAGTATGAGAAACA 60.675 45.833 0.00 0.00 32.44 2.83
3068 3728 4.564769 GCTGCTACAGAGTATGAGAAACAC 59.435 45.833 0.00 0.00 32.44 3.32
3069 3729 5.073311 TGCTACAGAGTATGAGAAACACC 57.927 43.478 0.00 0.00 0.00 4.16
3070 3730 4.081642 TGCTACAGAGTATGAGAAACACCC 60.082 45.833 0.00 0.00 0.00 4.61
3071 3731 3.983044 ACAGAGTATGAGAAACACCCC 57.017 47.619 0.00 0.00 0.00 4.95
3072 3732 3.248024 ACAGAGTATGAGAAACACCCCA 58.752 45.455 0.00 0.00 0.00 4.96
3073 3733 3.846588 ACAGAGTATGAGAAACACCCCAT 59.153 43.478 0.00 0.00 0.00 4.00
3074 3734 4.194640 CAGAGTATGAGAAACACCCCATG 58.805 47.826 0.00 0.00 0.00 3.66
3075 3735 3.200825 AGAGTATGAGAAACACCCCATGG 59.799 47.826 4.14 4.14 37.80 3.66
3076 3736 2.024414 GTATGAGAAACACCCCATGGC 58.976 52.381 6.09 0.00 33.59 4.40
3077 3737 0.324645 ATGAGAAACACCCCATGGCC 60.325 55.000 6.09 0.00 33.59 5.36
3078 3738 2.035626 AGAAACACCCCATGGCCG 59.964 61.111 6.09 0.10 33.59 6.13
3079 3739 3.068064 GAAACACCCCATGGCCGG 61.068 66.667 6.09 5.77 33.59 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 9.063615 CACATAGGTAAACTTAAGGTCAAAGTT 57.936 33.333 7.53 0.00 46.45 2.66
310 327 2.505819 AGCCCTACATGGTCGAAGAAAT 59.494 45.455 0.00 0.00 39.69 2.17
318 335 0.032267 GCGAGTAGCCCTACATGGTC 59.968 60.000 8.06 0.00 40.81 4.02
386 403 1.141053 GGAGTGGCGGAGGTTGAATAT 59.859 52.381 0.00 0.00 0.00 1.28
411 428 1.469940 CCCTCTCAAACGTGATCCTCG 60.470 57.143 0.00 5.98 31.85 4.63
422 439 1.795170 GCTGCAAACGCCCTCTCAAA 61.795 55.000 0.00 0.00 0.00 2.69
573 590 0.836606 TCCAGTCCAAGTGTGCTCAA 59.163 50.000 0.00 0.00 0.00 3.02
660 677 2.093021 GCAAACATATGCCCAACCCAAT 60.093 45.455 1.58 0.00 40.49 3.16
960 1310 8.729756 AGAACAAACAAAAGGAAAGAAAAATGG 58.270 29.630 0.00 0.00 0.00 3.16
1300 1657 3.393609 TGCTCTTCCTCCAGCAATATGAT 59.606 43.478 0.00 0.00 42.74 2.45
1396 1818 7.173390 GGTCCTACATGAAGCATAAGTAATTCC 59.827 40.741 0.00 0.00 0.00 3.01
1463 1939 7.201758 CCAAAGATAGCAAGCATCTGAACATAA 60.202 37.037 7.44 0.00 33.03 1.90
1464 1940 6.261603 CCAAAGATAGCAAGCATCTGAACATA 59.738 38.462 7.44 0.00 33.03 2.29
1465 1941 5.067413 CCAAAGATAGCAAGCATCTGAACAT 59.933 40.000 7.44 0.00 33.03 2.71
1466 1942 4.397103 CCAAAGATAGCAAGCATCTGAACA 59.603 41.667 7.44 0.00 33.03 3.18
1467 1943 4.637534 TCCAAAGATAGCAAGCATCTGAAC 59.362 41.667 7.44 0.00 33.03 3.18
1468 1944 4.847198 TCCAAAGATAGCAAGCATCTGAA 58.153 39.130 7.44 0.00 33.03 3.02
1469 1945 4.492494 TCCAAAGATAGCAAGCATCTGA 57.508 40.909 7.44 0.00 33.03 3.27
1470 1946 4.639310 ACTTCCAAAGATAGCAAGCATCTG 59.361 41.667 7.44 0.00 33.03 2.90
1471 1947 4.639310 CACTTCCAAAGATAGCAAGCATCT 59.361 41.667 0.00 0.00 34.15 2.90
1472 1948 4.201990 CCACTTCCAAAGATAGCAAGCATC 60.202 45.833 0.00 0.00 0.00 3.91
1473 1949 3.698040 CCACTTCCAAAGATAGCAAGCAT 59.302 43.478 0.00 0.00 0.00 3.79
1474 1950 3.084039 CCACTTCCAAAGATAGCAAGCA 58.916 45.455 0.00 0.00 0.00 3.91
1475 1951 3.084786 ACCACTTCCAAAGATAGCAAGC 58.915 45.455 0.00 0.00 0.00 4.01
1476 1952 6.678900 GCAATACCACTTCCAAAGATAGCAAG 60.679 42.308 0.00 0.00 0.00 4.01
1477 1953 5.125417 GCAATACCACTTCCAAAGATAGCAA 59.875 40.000 0.00 0.00 0.00 3.91
1478 1954 4.640201 GCAATACCACTTCCAAAGATAGCA 59.360 41.667 0.00 0.00 0.00 3.49
1654 2148 1.303155 GGAGCAGCAGCAGTTTCCT 60.303 57.895 3.17 0.00 45.49 3.36
1801 2302 2.108168 CCTCTCCGGTGGACTTGATAA 58.892 52.381 0.00 0.00 0.00 1.75
2068 2605 0.251341 ATTTGCTCACACTCCACCCC 60.251 55.000 0.00 0.00 0.00 4.95
2092 2629 0.881118 GCCAGCTTCGTTGAATTGGA 59.119 50.000 11.97 0.00 31.89 3.53
2222 2778 8.456471 CACATATTAGATAGCCACAAATCCATG 58.544 37.037 0.00 0.00 0.00 3.66
2468 3126 8.947055 AATTTTGGTAATATGCACTCCAAATC 57.053 30.769 17.10 0.00 44.14 2.17
2637 3297 2.158986 GGTGTACTGCATGAGATGAGCT 60.159 50.000 0.00 0.00 0.00 4.09
2698 3358 0.038310 GAGCTTGGTTGGGGCTAGTT 59.962 55.000 0.00 0.00 36.37 2.24
2699 3359 1.685820 GAGCTTGGTTGGGGCTAGT 59.314 57.895 0.00 0.00 36.37 2.57
2779 3439 8.734386 CCCGTAAGTCTAGTATTTTCGGTATAT 58.266 37.037 14.84 0.00 34.70 0.86
2780 3440 7.308589 GCCCGTAAGTCTAGTATTTTCGGTATA 60.309 40.741 14.84 0.00 34.70 1.47
2781 3441 6.515696 GCCCGTAAGTCTAGTATTTTCGGTAT 60.516 42.308 14.84 0.00 34.70 2.73
2782 3442 5.221048 GCCCGTAAGTCTAGTATTTTCGGTA 60.221 44.000 14.84 0.00 34.70 4.02
2783 3443 4.440663 GCCCGTAAGTCTAGTATTTTCGGT 60.441 45.833 14.84 0.00 34.70 4.69
2784 3444 4.047142 GCCCGTAAGTCTAGTATTTTCGG 58.953 47.826 11.58 11.58 36.00 4.30
2785 3445 3.727723 CGCCCGTAAGTCTAGTATTTTCG 59.272 47.826 0.00 0.00 0.00 3.46
2786 3446 4.925068 TCGCCCGTAAGTCTAGTATTTTC 58.075 43.478 0.00 0.00 0.00 2.29
2787 3447 4.400567 ACTCGCCCGTAAGTCTAGTATTTT 59.599 41.667 0.00 0.00 0.00 1.82
2788 3448 3.950395 ACTCGCCCGTAAGTCTAGTATTT 59.050 43.478 0.00 0.00 0.00 1.40
2789 3449 3.549794 ACTCGCCCGTAAGTCTAGTATT 58.450 45.455 0.00 0.00 0.00 1.89
2790 3450 3.205784 ACTCGCCCGTAAGTCTAGTAT 57.794 47.619 0.00 0.00 0.00 2.12
2791 3451 2.679837 CAACTCGCCCGTAAGTCTAGTA 59.320 50.000 0.00 0.00 0.00 1.82
2792 3452 1.471684 CAACTCGCCCGTAAGTCTAGT 59.528 52.381 0.00 0.00 0.00 2.57
2793 3453 1.202268 CCAACTCGCCCGTAAGTCTAG 60.202 57.143 0.00 0.00 0.00 2.43
2794 3454 0.813184 CCAACTCGCCCGTAAGTCTA 59.187 55.000 0.00 0.00 0.00 2.59
2795 3455 1.590147 CCAACTCGCCCGTAAGTCT 59.410 57.895 0.00 0.00 0.00 3.24
2796 3456 2.098831 GCCAACTCGCCCGTAAGTC 61.099 63.158 0.00 0.00 0.00 3.01
2797 3457 2.047560 GCCAACTCGCCCGTAAGT 60.048 61.111 0.00 0.00 0.00 2.24
2798 3458 2.047655 TGCCAACTCGCCCGTAAG 60.048 61.111 0.00 0.00 0.00 2.34
2799 3459 2.357760 GTGCCAACTCGCCCGTAA 60.358 61.111 0.00 0.00 0.00 3.18
2800 3460 4.728102 CGTGCCAACTCGCCCGTA 62.728 66.667 0.00 0.00 0.00 4.02
2805 3465 3.423154 CTTCCCGTGCCAACTCGC 61.423 66.667 0.00 0.00 0.00 5.03
2806 3466 0.882927 TTTCTTCCCGTGCCAACTCG 60.883 55.000 0.00 0.00 0.00 4.18
2807 3467 0.875059 CTTTCTTCCCGTGCCAACTC 59.125 55.000 0.00 0.00 0.00 3.01
2808 3468 0.182775 ACTTTCTTCCCGTGCCAACT 59.817 50.000 0.00 0.00 0.00 3.16
2809 3469 1.029681 AACTTTCTTCCCGTGCCAAC 58.970 50.000 0.00 0.00 0.00 3.77
2810 3470 2.223745 GTAACTTTCTTCCCGTGCCAA 58.776 47.619 0.00 0.00 0.00 4.52
2811 3471 1.141254 TGTAACTTTCTTCCCGTGCCA 59.859 47.619 0.00 0.00 0.00 4.92
2812 3472 1.804748 CTGTAACTTTCTTCCCGTGCC 59.195 52.381 0.00 0.00 0.00 5.01
2813 3473 2.479275 GTCTGTAACTTTCTTCCCGTGC 59.521 50.000 0.00 0.00 0.00 5.34
2814 3474 2.729882 CGTCTGTAACTTTCTTCCCGTG 59.270 50.000 0.00 0.00 0.00 4.94
2815 3475 2.363359 ACGTCTGTAACTTTCTTCCCGT 59.637 45.455 0.00 0.00 0.00 5.28
2816 3476 3.022607 ACGTCTGTAACTTTCTTCCCG 57.977 47.619 0.00 0.00 0.00 5.14
2817 3477 4.021632 AGGTACGTCTGTAACTTTCTTCCC 60.022 45.833 0.00 0.00 46.54 3.97
2818 3478 4.922103 CAGGTACGTCTGTAACTTTCTTCC 59.078 45.833 0.00 0.00 46.54 3.46
2819 3479 5.527033 ACAGGTACGTCTGTAACTTTCTTC 58.473 41.667 8.05 0.00 46.54 2.87
2820 3480 5.526506 ACAGGTACGTCTGTAACTTTCTT 57.473 39.130 8.05 0.00 46.54 2.52
2821 3481 4.826183 AGACAGGTACGTCTGTAACTTTCT 59.174 41.667 9.66 3.89 46.54 2.52
2822 3482 5.118642 AGACAGGTACGTCTGTAACTTTC 57.881 43.478 9.66 0.00 46.54 2.62
2823 3483 5.301298 AGAAGACAGGTACGTCTGTAACTTT 59.699 40.000 9.66 3.61 46.54 2.66
2824 3484 4.826183 AGAAGACAGGTACGTCTGTAACTT 59.174 41.667 9.66 9.66 46.54 2.66
2826 3486 4.762956 AGAAGACAGGTACGTCTGTAAC 57.237 45.455 9.66 5.27 45.56 2.50
2827 3487 5.300034 TGAAAGAAGACAGGTACGTCTGTAA 59.700 40.000 9.66 0.00 45.56 2.41
2828 3488 4.823442 TGAAAGAAGACAGGTACGTCTGTA 59.177 41.667 9.66 0.00 45.56 2.74
2829 3489 3.635373 TGAAAGAAGACAGGTACGTCTGT 59.365 43.478 9.47 9.47 45.56 3.41
2830 3490 4.230657 CTGAAAGAAGACAGGTACGTCTG 58.769 47.826 4.43 0.00 45.56 3.51
2831 3491 3.890147 ACTGAAAGAAGACAGGTACGTCT 59.110 43.478 0.00 0.00 42.64 4.18
2832 3492 4.240175 ACTGAAAGAAGACAGGTACGTC 57.760 45.455 0.00 0.00 38.30 4.34
2833 3493 4.667519 AACTGAAAGAAGACAGGTACGT 57.332 40.909 0.00 0.00 38.30 3.57
2834 3494 5.634020 CCTTAACTGAAAGAAGACAGGTACG 59.366 44.000 0.00 0.00 36.28 3.67
2835 3495 6.424207 CACCTTAACTGAAAGAAGACAGGTAC 59.576 42.308 0.00 0.00 36.28 3.34
2836 3496 6.522054 CACCTTAACTGAAAGAAGACAGGTA 58.478 40.000 0.00 0.00 38.30 3.08
2837 3497 5.368989 CACCTTAACTGAAAGAAGACAGGT 58.631 41.667 0.00 0.00 38.30 4.00
2838 3498 4.214332 GCACCTTAACTGAAAGAAGACAGG 59.786 45.833 0.00 0.00 38.30 4.00
2839 3499 4.214332 GGCACCTTAACTGAAAGAAGACAG 59.786 45.833 0.00 0.00 37.43 3.51
2840 3500 4.134563 GGCACCTTAACTGAAAGAAGACA 58.865 43.478 0.00 0.00 37.43 3.41
2841 3501 4.214332 CAGGCACCTTAACTGAAAGAAGAC 59.786 45.833 0.00 0.00 37.43 3.01
2842 3502 4.389374 CAGGCACCTTAACTGAAAGAAGA 58.611 43.478 0.00 0.00 37.43 2.87
2843 3503 3.057946 GCAGGCACCTTAACTGAAAGAAG 60.058 47.826 0.00 0.00 37.43 2.85
2844 3504 2.884639 GCAGGCACCTTAACTGAAAGAA 59.115 45.455 0.00 0.00 37.43 2.52
2845 3505 2.106511 AGCAGGCACCTTAACTGAAAGA 59.893 45.455 0.00 0.00 37.43 2.52
2846 3506 2.508526 AGCAGGCACCTTAACTGAAAG 58.491 47.619 0.00 0.00 42.29 2.62
2847 3507 2.656947 AGCAGGCACCTTAACTGAAA 57.343 45.000 0.00 0.00 34.21 2.69
2848 3508 2.370519 TGTAGCAGGCACCTTAACTGAA 59.629 45.455 0.00 0.00 34.21 3.02
2849 3509 1.974957 TGTAGCAGGCACCTTAACTGA 59.025 47.619 0.00 0.00 34.21 3.41
2850 3510 2.472695 TGTAGCAGGCACCTTAACTG 57.527 50.000 0.00 0.00 35.40 3.16
2851 3511 3.502123 TTTGTAGCAGGCACCTTAACT 57.498 42.857 0.00 0.00 0.00 2.24
2852 3512 3.756434 TGATTTGTAGCAGGCACCTTAAC 59.244 43.478 0.00 0.00 0.00 2.01
2853 3513 4.009675 CTGATTTGTAGCAGGCACCTTAA 58.990 43.478 0.00 0.00 34.15 1.85
2854 3514 3.609853 CTGATTTGTAGCAGGCACCTTA 58.390 45.455 0.00 0.00 34.15 2.69
2855 3515 2.440409 CTGATTTGTAGCAGGCACCTT 58.560 47.619 0.00 0.00 34.15 3.50
2856 3516 2.119801 CTGATTTGTAGCAGGCACCT 57.880 50.000 0.00 0.00 34.15 4.00
2862 3522 0.745845 AGCCGCCTGATTTGTAGCAG 60.746 55.000 0.00 0.00 37.53 4.24
2863 3523 1.026182 CAGCCGCCTGATTTGTAGCA 61.026 55.000 0.00 0.00 41.77 3.49
2864 3524 0.744414 TCAGCCGCCTGATTTGTAGC 60.744 55.000 0.00 0.00 42.98 3.58
2865 3525 3.458872 TCAGCCGCCTGATTTGTAG 57.541 52.632 0.00 0.00 42.98 2.74
2873 3533 1.243342 TGGACAAAATCAGCCGCCTG 61.243 55.000 0.00 0.00 40.54 4.85
2874 3534 0.539438 TTGGACAAAATCAGCCGCCT 60.539 50.000 0.00 0.00 0.00 5.52
2875 3535 0.109132 CTTGGACAAAATCAGCCGCC 60.109 55.000 0.00 0.00 0.00 6.13
2876 3536 0.598065 ACTTGGACAAAATCAGCCGC 59.402 50.000 0.00 0.00 0.00 6.53
2877 3537 3.369546 AAACTTGGACAAAATCAGCCG 57.630 42.857 0.00 0.00 0.00 5.52
2878 3538 4.686091 GCTTAAACTTGGACAAAATCAGCC 59.314 41.667 0.00 0.00 0.00 4.85
2879 3539 4.686091 GGCTTAAACTTGGACAAAATCAGC 59.314 41.667 0.00 0.00 0.00 4.26
2880 3540 4.917415 CGGCTTAAACTTGGACAAAATCAG 59.083 41.667 0.00 0.00 0.00 2.90
2881 3541 4.794655 GCGGCTTAAACTTGGACAAAATCA 60.795 41.667 0.00 0.00 0.00 2.57
2882 3542 3.673338 GCGGCTTAAACTTGGACAAAATC 59.327 43.478 0.00 0.00 0.00 2.17
2883 3543 3.554129 GGCGGCTTAAACTTGGACAAAAT 60.554 43.478 0.00 0.00 0.00 1.82
2884 3544 2.223852 GGCGGCTTAAACTTGGACAAAA 60.224 45.455 0.00 0.00 0.00 2.44
2885 3545 1.338655 GGCGGCTTAAACTTGGACAAA 59.661 47.619 0.00 0.00 0.00 2.83
2886 3546 0.955905 GGCGGCTTAAACTTGGACAA 59.044 50.000 0.00 0.00 0.00 3.18
2887 3547 0.109723 AGGCGGCTTAAACTTGGACA 59.890 50.000 5.25 0.00 0.00 4.02
2888 3548 2.007608 CTAGGCGGCTTAAACTTGGAC 58.992 52.381 19.76 0.00 0.00 4.02
2889 3549 1.677820 GCTAGGCGGCTTAAACTTGGA 60.678 52.381 19.76 0.00 0.00 3.53
2890 3550 0.733150 GCTAGGCGGCTTAAACTTGG 59.267 55.000 19.76 0.00 0.00 3.61
2891 3551 0.733150 GGCTAGGCGGCTTAAACTTG 59.267 55.000 19.76 0.37 34.85 3.16
2892 3552 3.170360 GGCTAGGCGGCTTAAACTT 57.830 52.632 19.76 0.00 34.85 2.66
2893 3553 4.957164 GGCTAGGCGGCTTAAACT 57.043 55.556 19.76 0.00 34.85 2.66
2903 3563 2.925162 AATTCGACGGCAGGCTAGGC 62.925 60.000 8.55 8.55 0.00 3.93
2904 3564 0.876342 GAATTCGACGGCAGGCTAGG 60.876 60.000 0.00 0.00 0.00 3.02
2905 3565 0.179111 TGAATTCGACGGCAGGCTAG 60.179 55.000 0.04 0.00 0.00 3.42
2906 3566 0.459585 GTGAATTCGACGGCAGGCTA 60.460 55.000 0.04 0.00 0.00 3.93
2907 3567 1.741770 GTGAATTCGACGGCAGGCT 60.742 57.895 0.04 0.00 0.00 4.58
2908 3568 1.696832 GAGTGAATTCGACGGCAGGC 61.697 60.000 0.04 0.00 0.00 4.85
2909 3569 0.389817 TGAGTGAATTCGACGGCAGG 60.390 55.000 0.04 0.00 0.00 4.85
2910 3570 1.126846 GTTGAGTGAATTCGACGGCAG 59.873 52.381 0.04 0.00 0.00 4.85
2911 3571 1.144969 GTTGAGTGAATTCGACGGCA 58.855 50.000 0.04 2.69 0.00 5.69
2912 3572 1.126846 CAGTTGAGTGAATTCGACGGC 59.873 52.381 0.04 0.00 36.72 5.68
2913 3573 1.726791 CCAGTTGAGTGAATTCGACGG 59.273 52.381 0.04 0.00 36.72 4.79
2914 3574 1.726791 CCCAGTTGAGTGAATTCGACG 59.273 52.381 0.04 0.00 36.72 5.12
2915 3575 3.040147 TCCCAGTTGAGTGAATTCGAC 57.960 47.619 0.04 0.74 0.00 4.20
2916 3576 3.599343 CATCCCAGTTGAGTGAATTCGA 58.401 45.455 0.04 0.00 0.00 3.71
2917 3577 2.679837 CCATCCCAGTTGAGTGAATTCG 59.320 50.000 0.04 0.00 0.00 3.34
2918 3578 3.955471 TCCATCCCAGTTGAGTGAATTC 58.045 45.455 0.00 0.00 0.00 2.17
2919 3579 4.598036 ATCCATCCCAGTTGAGTGAATT 57.402 40.909 0.00 0.00 0.00 2.17
2920 3580 4.598036 AATCCATCCCAGTTGAGTGAAT 57.402 40.909 0.00 0.00 0.00 2.57
2921 3581 4.080356 CCTAATCCATCCCAGTTGAGTGAA 60.080 45.833 0.00 0.00 0.00 3.18
2922 3582 3.455910 CCTAATCCATCCCAGTTGAGTGA 59.544 47.826 0.00 0.00 0.00 3.41
2923 3583 3.434167 CCCTAATCCATCCCAGTTGAGTG 60.434 52.174 0.00 0.00 0.00 3.51
2924 3584 2.780010 CCCTAATCCATCCCAGTTGAGT 59.220 50.000 0.00 0.00 0.00 3.41
2925 3585 2.487986 GCCCTAATCCATCCCAGTTGAG 60.488 54.545 0.00 0.00 0.00 3.02
2926 3586 1.494721 GCCCTAATCCATCCCAGTTGA 59.505 52.381 0.00 0.00 0.00 3.18
2927 3587 1.479389 GGCCCTAATCCATCCCAGTTG 60.479 57.143 0.00 0.00 0.00 3.16
2928 3588 0.853530 GGCCCTAATCCATCCCAGTT 59.146 55.000 0.00 0.00 0.00 3.16
2929 3589 1.418908 CGGCCCTAATCCATCCCAGT 61.419 60.000 0.00 0.00 0.00 4.00
2930 3590 1.376466 CGGCCCTAATCCATCCCAG 59.624 63.158 0.00 0.00 0.00 4.45
2931 3591 2.829384 GCGGCCCTAATCCATCCCA 61.829 63.158 0.00 0.00 0.00 4.37
2932 3592 2.034221 GCGGCCCTAATCCATCCC 59.966 66.667 0.00 0.00 0.00 3.85
2933 3593 2.358737 CGCGGCCCTAATCCATCC 60.359 66.667 0.00 0.00 0.00 3.51
2934 3594 3.050275 GCGCGGCCCTAATCCATC 61.050 66.667 8.83 0.00 0.00 3.51
2935 3595 4.988598 CGCGCGGCCCTAATCCAT 62.989 66.667 24.84 0.00 0.00 3.41
2937 3597 4.681978 ATCGCGCGGCCCTAATCC 62.682 66.667 31.69 0.00 0.00 3.01
2938 3598 2.665185 AATCGCGCGGCCCTAATC 60.665 61.111 31.69 0.00 0.00 1.75
2939 3599 2.665185 GAATCGCGCGGCCCTAAT 60.665 61.111 31.69 12.23 0.00 1.73
2940 3600 4.903010 GGAATCGCGCGGCCCTAA 62.903 66.667 31.69 9.99 0.00 2.69
2946 3606 2.978452 ATTGAGGAGGAATCGCGCGG 62.978 60.000 31.69 11.75 0.00 6.46
2947 3607 1.552348 GATTGAGGAGGAATCGCGCG 61.552 60.000 26.76 26.76 0.00 6.86
2948 3608 0.530650 TGATTGAGGAGGAATCGCGC 60.531 55.000 0.00 0.00 33.25 6.86
2949 3609 2.064762 GATGATTGAGGAGGAATCGCG 58.935 52.381 0.00 0.00 33.25 5.87
2950 3610 2.064762 CGATGATTGAGGAGGAATCGC 58.935 52.381 0.00 0.00 33.25 4.58
2951 3611 2.064762 GCGATGATTGAGGAGGAATCG 58.935 52.381 0.00 0.00 39.78 3.34
2952 3612 3.399440 AGCGATGATTGAGGAGGAATC 57.601 47.619 0.00 0.00 0.00 2.52
2953 3613 3.495806 GGAAGCGATGATTGAGGAGGAAT 60.496 47.826 0.00 0.00 0.00 3.01
2954 3614 2.158900 GGAAGCGATGATTGAGGAGGAA 60.159 50.000 0.00 0.00 0.00 3.36
2955 3615 1.414181 GGAAGCGATGATTGAGGAGGA 59.586 52.381 0.00 0.00 0.00 3.71
2956 3616 1.139654 TGGAAGCGATGATTGAGGAGG 59.860 52.381 0.00 0.00 0.00 4.30
2957 3617 2.609427 TGGAAGCGATGATTGAGGAG 57.391 50.000 0.00 0.00 0.00 3.69
2958 3618 2.702478 AGATGGAAGCGATGATTGAGGA 59.298 45.455 0.00 0.00 0.00 3.71
2959 3619 2.806818 CAGATGGAAGCGATGATTGAGG 59.193 50.000 0.00 0.00 0.00 3.86
2960 3620 3.247886 CACAGATGGAAGCGATGATTGAG 59.752 47.826 0.00 0.00 0.00 3.02
2961 3621 3.200483 CACAGATGGAAGCGATGATTGA 58.800 45.455 0.00 0.00 0.00 2.57
2962 3622 3.604065 CACAGATGGAAGCGATGATTG 57.396 47.619 0.00 0.00 0.00 2.67
2974 3634 1.078214 ATGCGTGACCCACAGATGG 60.078 57.895 0.00 0.00 46.81 3.51
2975 3635 1.423721 CGATGCGTGACCCACAGATG 61.424 60.000 0.00 0.00 33.40 2.90
2976 3636 1.153568 CGATGCGTGACCCACAGAT 60.154 57.895 0.00 0.00 33.40 2.90
2977 3637 1.245376 TACGATGCGTGACCCACAGA 61.245 55.000 2.33 0.00 41.39 3.41
2978 3638 0.802222 CTACGATGCGTGACCCACAG 60.802 60.000 2.33 0.00 41.39 3.66
2979 3639 1.214325 CTACGATGCGTGACCCACA 59.786 57.895 2.33 0.00 41.39 4.17
2980 3640 2.165301 GCTACGATGCGTGACCCAC 61.165 63.158 2.33 0.00 41.39 4.61
2981 3641 1.884075 AAGCTACGATGCGTGACCCA 61.884 55.000 2.33 0.00 41.39 4.51
2982 3642 0.739813 AAAGCTACGATGCGTGACCC 60.740 55.000 2.33 0.00 41.39 4.46
2983 3643 1.076332 AAAAGCTACGATGCGTGACC 58.924 50.000 2.33 0.00 41.39 4.02
2984 3644 1.459592 ACAAAAGCTACGATGCGTGAC 59.540 47.619 2.33 0.00 41.39 3.67
2985 3645 1.459209 CACAAAAGCTACGATGCGTGA 59.541 47.619 2.33 0.00 41.39 4.35
2986 3646 1.464023 CCACAAAAGCTACGATGCGTG 60.464 52.381 2.33 0.00 41.39 5.34
2987 3647 0.796312 CCACAAAAGCTACGATGCGT 59.204 50.000 0.00 0.00 44.35 5.24
2988 3648 1.075542 TCCACAAAAGCTACGATGCG 58.924 50.000 0.00 0.00 38.13 4.73
2989 3649 1.201921 CGTCCACAAAAGCTACGATGC 60.202 52.381 0.00 0.00 35.66 3.91
2990 3650 1.393539 CCGTCCACAAAAGCTACGATG 59.606 52.381 4.57 0.00 35.66 3.84
2991 3651 1.722011 CCGTCCACAAAAGCTACGAT 58.278 50.000 4.57 0.00 35.66 3.73
2992 3652 0.947180 GCCGTCCACAAAAGCTACGA 60.947 55.000 4.57 0.00 35.66 3.43
2993 3653 1.495951 GCCGTCCACAAAAGCTACG 59.504 57.895 0.00 0.00 0.00 3.51
2994 3654 0.947180 TCGCCGTCCACAAAAGCTAC 60.947 55.000 0.00 0.00 0.00 3.58
2995 3655 0.669318 CTCGCCGTCCACAAAAGCTA 60.669 55.000 0.00 0.00 0.00 3.32
2996 3656 1.961277 CTCGCCGTCCACAAAAGCT 60.961 57.895 0.00 0.00 0.00 3.74
2997 3657 2.556287 CTCGCCGTCCACAAAAGC 59.444 61.111 0.00 0.00 0.00 3.51
2998 3658 2.175184 CTGCTCGCCGTCCACAAAAG 62.175 60.000 0.00 0.00 0.00 2.27
2999 3659 2.203084 TGCTCGCCGTCCACAAAA 60.203 55.556 0.00 0.00 0.00 2.44
3000 3660 2.664851 CTGCTCGCCGTCCACAAA 60.665 61.111 0.00 0.00 0.00 2.83
3010 3670 4.479993 ATCCCTGGTGCTGCTCGC 62.480 66.667 0.00 0.00 39.77 5.03
3011 3671 2.513204 CATCCCTGGTGCTGCTCG 60.513 66.667 0.00 0.00 0.00 5.03
3012 3672 2.124403 CCATCCCTGGTGCTGCTC 60.124 66.667 0.00 0.00 37.79 4.26
3013 3673 3.736224 CCCATCCCTGGTGCTGCT 61.736 66.667 0.00 0.00 41.37 4.24
3014 3674 4.828296 CCCCATCCCTGGTGCTGC 62.828 72.222 0.00 0.00 41.37 5.25
3015 3675 3.341629 ACCCCATCCCTGGTGCTG 61.342 66.667 0.00 0.00 41.37 4.41
3016 3676 3.017581 GACCCCATCCCTGGTGCT 61.018 66.667 0.00 0.00 41.37 4.40
3017 3677 2.917897 TTGACCCCATCCCTGGTGC 61.918 63.158 0.00 0.00 41.37 5.01
3018 3678 1.000896 GTTGACCCCATCCCTGGTG 60.001 63.158 0.00 0.00 41.37 4.17
3019 3679 2.602676 CGTTGACCCCATCCCTGGT 61.603 63.158 0.00 0.00 41.37 4.00
3020 3680 2.272146 CGTTGACCCCATCCCTGG 59.728 66.667 0.00 0.00 42.73 4.45
3021 3681 2.438434 GCGTTGACCCCATCCCTG 60.438 66.667 0.00 0.00 0.00 4.45
3022 3682 2.610859 AGCGTTGACCCCATCCCT 60.611 61.111 0.00 0.00 0.00 4.20
3023 3683 2.124695 GAGCGTTGACCCCATCCC 60.125 66.667 0.00 0.00 0.00 3.85
3024 3684 2.124695 GGAGCGTTGACCCCATCC 60.125 66.667 0.00 0.00 0.00 3.51
3025 3685 1.450312 CTGGAGCGTTGACCCCATC 60.450 63.158 0.00 0.00 0.00 3.51
3026 3686 2.671070 CTGGAGCGTTGACCCCAT 59.329 61.111 0.00 0.00 0.00 4.00
3027 3687 4.329545 GCTGGAGCGTTGACCCCA 62.330 66.667 0.00 0.00 0.00 4.96
3037 3697 2.889503 CTGTAGCAGCGCTGGAGC 60.890 66.667 36.47 23.76 40.10 4.70
3038 3698 1.226916 CTCTGTAGCAGCGCTGGAG 60.227 63.158 36.47 27.92 40.10 3.86
3039 3699 0.679960 TACTCTGTAGCAGCGCTGGA 60.680 55.000 36.47 23.52 40.10 3.86
3040 3700 0.387202 ATACTCTGTAGCAGCGCTGG 59.613 55.000 36.47 20.64 40.10 4.85
3041 3701 1.066152 TCATACTCTGTAGCAGCGCTG 59.934 52.381 32.83 32.83 40.10 5.18
3042 3702 1.336440 CTCATACTCTGTAGCAGCGCT 59.664 52.381 2.64 2.64 43.41 5.92
3043 3703 1.335182 TCTCATACTCTGTAGCAGCGC 59.665 52.381 0.00 0.00 0.00 5.92
3044 3704 3.699779 TTCTCATACTCTGTAGCAGCG 57.300 47.619 0.00 0.00 0.00 5.18
3045 3705 4.564769 GTGTTTCTCATACTCTGTAGCAGC 59.435 45.833 0.00 0.00 0.00 5.25
3046 3706 5.105752 GGTGTTTCTCATACTCTGTAGCAG 58.894 45.833 0.00 0.00 0.00 4.24
3047 3707 4.081642 GGGTGTTTCTCATACTCTGTAGCA 60.082 45.833 0.00 0.00 0.00 3.49
3048 3708 4.434520 GGGTGTTTCTCATACTCTGTAGC 58.565 47.826 0.00 0.00 0.00 3.58
3049 3709 4.466370 TGGGGTGTTTCTCATACTCTGTAG 59.534 45.833 0.00 0.00 0.00 2.74
3050 3710 4.422057 TGGGGTGTTTCTCATACTCTGTA 58.578 43.478 0.00 0.00 0.00 2.74
3051 3711 3.248024 TGGGGTGTTTCTCATACTCTGT 58.752 45.455 0.00 0.00 0.00 3.41
3052 3712 3.981071 TGGGGTGTTTCTCATACTCTG 57.019 47.619 0.00 0.00 0.00 3.35
3053 3713 3.200825 CCATGGGGTGTTTCTCATACTCT 59.799 47.826 2.85 0.00 0.00 3.24
3054 3714 3.545703 CCATGGGGTGTTTCTCATACTC 58.454 50.000 2.85 0.00 0.00 2.59
3055 3715 2.357154 GCCATGGGGTGTTTCTCATACT 60.357 50.000 15.13 0.00 36.17 2.12
3056 3716 2.024414 GCCATGGGGTGTTTCTCATAC 58.976 52.381 15.13 0.00 36.17 2.39
3057 3717 1.064017 GGCCATGGGGTGTTTCTCATA 60.064 52.381 15.13 0.00 36.17 2.15
3058 3718 0.324645 GGCCATGGGGTGTTTCTCAT 60.325 55.000 15.13 0.00 36.17 2.90
3059 3719 1.076549 GGCCATGGGGTGTTTCTCA 59.923 57.895 15.13 0.00 36.17 3.27
3060 3720 2.046285 CGGCCATGGGGTGTTTCTC 61.046 63.158 15.13 0.00 36.17 2.87
3061 3721 2.035626 CGGCCATGGGGTGTTTCT 59.964 61.111 15.13 0.00 36.17 2.52
3062 3722 3.068064 CCGGCCATGGGGTGTTTC 61.068 66.667 15.13 0.00 36.17 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.