Multiple sequence alignment - TraesCS3A01G199100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G199100 chr3A 100.000 5513 0 0 1 5513 323104484 323098972 0.000000e+00 10181
1 TraesCS3A01G199100 chr3A 94.845 485 22 2 5029 5513 658884816 658885297 0.000000e+00 754
2 TraesCS3A01G199100 chr3A 94.617 483 23 2 5031 5513 456749803 456750282 0.000000e+00 745
3 TraesCS3A01G199100 chr3A 94.410 483 25 2 5031 5513 638933509 638933989 0.000000e+00 741
4 TraesCS3A01G199100 chr3D 97.284 4345 86 12 711 5037 225523628 225527958 0.000000e+00 7341
5 TraesCS3A01G199100 chr3D 97.719 526 10 2 1 525 225523112 225523636 0.000000e+00 904
6 TraesCS3A01G199100 chr3B 96.249 4345 112 14 711 5037 354947293 354942982 0.000000e+00 7073
7 TraesCS3A01G199100 chr3B 96.970 396 12 0 128 523 354947682 354947287 0.000000e+00 665
8 TraesCS3A01G199100 chr3B 96.907 97 3 0 1 97 354947779 354947683 4.420000e-36 163
9 TraesCS3A01G199100 chr7A 94.639 485 24 2 5030 5513 671307921 671308404 0.000000e+00 750
10 TraesCS3A01G199100 chr7A 94.835 484 20 4 5031 5513 720918956 720918477 0.000000e+00 750
11 TraesCS3A01G199100 chr7A 100.000 186 0 0 526 711 723355858 723356043 1.470000e-90 344
12 TraesCS3A01G199100 chr7A 98.930 187 1 1 526 712 732094550 732094365 3.180000e-87 333
13 TraesCS3A01G199100 chr6B 94.444 486 24 3 5029 5513 642909891 642910374 0.000000e+00 745
14 TraesCS3A01G199100 chr6B 87.903 248 26 3 1887 2134 656031912 656031669 6.990000e-74 289
15 TraesCS3A01G199100 chr6B 88.987 227 23 2 1901 2127 455134362 455134586 4.210000e-71 279
16 TraesCS3A01G199100 chr5A 93.890 491 27 2 5023 5513 394750854 394751341 0.000000e+00 737
17 TraesCS3A01G199100 chr5A 98.925 186 2 0 525 710 660208211 660208396 3.180000e-87 333
18 TraesCS3A01G199100 chr5A 96.020 201 3 4 526 725 569989733 569989537 6.890000e-84 322
19 TraesCS3A01G199100 chr1A 93.865 489 27 2 5025 5513 102162370 102161885 0.000000e+00 734
20 TraesCS3A01G199100 chr1A 96.117 206 8 0 525 730 290344423 290344218 2.460000e-88 337
21 TraesCS3A01G199100 chr6A 93.608 485 27 3 5030 5513 80884005 80883524 0.000000e+00 721
22 TraesCS3A01G199100 chr6A 94.860 214 6 4 516 726 7988653 7988442 4.120000e-86 329
23 TraesCS3A01G199100 chr6A 86.694 248 32 1 1887 2134 579954027 579953781 1.960000e-69 274
24 TraesCS3A01G199100 chr7D 91.463 246 19 2 1888 2133 486463533 486463776 2.460000e-88 337
25 TraesCS3A01G199100 chr2A 97.475 198 3 2 515 710 718110418 718110615 2.460000e-88 337
26 TraesCS3A01G199100 chr2A 96.535 202 7 0 519 720 57175042 57175243 8.850000e-88 335
27 TraesCS3A01G199100 chr2A 87.705 244 21 3 1888 2127 73540767 73541005 5.440000e-70 276
28 TraesCS3A01G199100 chr5D 94.286 210 7 5 512 720 488352308 488352513 3.210000e-82 316
29 TraesCS3A01G199100 chr2D 88.085 235 27 1 1899 2133 27826577 27826810 1.510000e-70 278
30 TraesCS3A01G199100 chr6D 86.290 248 32 2 1887 2134 433766929 433766684 9.100000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G199100 chr3A 323098972 323104484 5512 True 10181.000000 10181 100.000000 1 5513 1 chr3A.!!$R1 5512
1 TraesCS3A01G199100 chr3D 225523112 225527958 4846 False 4122.500000 7341 97.501500 1 5037 2 chr3D.!!$F1 5036
2 TraesCS3A01G199100 chr3B 354942982 354947779 4797 True 2633.666667 7073 96.708667 1 5037 3 chr3B.!!$R1 5036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 644 0.032815 TCCACACGAATCTCAACGCA 59.967 50.000 0.00 0.00 0.00 5.24 F
643 645 0.865111 CCACACGAATCTCAACGCAA 59.135 50.000 0.00 0.00 0.00 4.85 F
1792 1805 1.329913 GGGAAATGGGTCCATGGTGC 61.330 60.000 12.58 6.08 39.70 5.01 F
1843 1856 1.742761 CGCACATGTTCTTCTGGGAT 58.257 50.000 0.00 0.00 0.00 3.85 F
1917 1930 3.132289 TCCATTCCTAGAAGTAAGGCGTG 59.868 47.826 0.00 0.00 33.84 5.34 F
2392 2405 3.319198 GGCCCTCCCAGTCGTCAA 61.319 66.667 0.00 0.00 0.00 3.18 F
3669 3682 2.104622 CCATTTGTGGGAAGCCAGTTTT 59.895 45.455 0.00 0.00 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 1472 0.035056 ACTTGGCATGTAGGGTCAGC 60.035 55.000 3.94 0.00 0.00 4.26 R
2378 2391 0.037232 GAACCTTGACGACTGGGAGG 60.037 60.000 0.00 0.00 0.00 4.30 R
2977 2990 3.988517 CCTTTAGTTGACCACTCGACTTC 59.011 47.826 0.00 0.00 40.99 3.01 R
3107 3120 6.990349 CCGTTGTATTGGTCAGGTCTTATAAT 59.010 38.462 0.00 0.00 0.00 1.28 R
3669 3682 8.663167 AGTATTCACTTGATATTCCATGGATCA 58.337 33.333 17.06 13.97 0.00 2.92 R
3925 3938 1.421268 ACTCAACTTGGACCATCTGCA 59.579 47.619 0.00 0.00 0.00 4.41 R
5208 5232 0.035439 CTACCATTCGTGGTGGGCTT 60.035 55.000 10.23 0.00 43.03 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 152 5.699001 ACAACAAAGTCTACATCGTTATGCA 59.301 36.000 0.00 0.00 36.50 3.96
407 409 5.515106 ACTTAGGATAAGCTCTGACTCAGT 58.485 41.667 5.94 0.00 32.61 3.41
532 534 9.308000 TCATTTCTCATAATTTTAAGGGTGTGT 57.692 29.630 0.00 0.00 0.00 3.72
533 535 9.573133 CATTTCTCATAATTTTAAGGGTGTGTC 57.427 33.333 0.00 0.00 0.00 3.67
534 536 8.934023 TTTCTCATAATTTTAAGGGTGTGTCT 57.066 30.769 0.00 0.00 0.00 3.41
536 538 9.667107 TTCTCATAATTTTAAGGGTGTGTCTAG 57.333 33.333 0.00 0.00 0.00 2.43
537 539 8.265055 TCTCATAATTTTAAGGGTGTGTCTAGG 58.735 37.037 0.00 0.00 0.00 3.02
538 540 7.343357 TCATAATTTTAAGGGTGTGTCTAGGG 58.657 38.462 0.00 0.00 0.00 3.53
539 541 3.428413 TTTTAAGGGTGTGTCTAGGGC 57.572 47.619 0.00 0.00 0.00 5.19
540 542 2.032965 TTAAGGGTGTGTCTAGGGCA 57.967 50.000 0.00 0.00 0.00 5.36
541 543 1.272807 TAAGGGTGTGTCTAGGGCAC 58.727 55.000 10.20 10.20 37.37 5.01
542 544 0.766674 AAGGGTGTGTCTAGGGCACA 60.767 55.000 14.22 14.22 43.60 4.57
543 545 0.547712 AGGGTGTGTCTAGGGCACAT 60.548 55.000 18.92 5.97 46.66 3.21
544 546 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
545 547 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
546 548 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
547 549 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
548 550 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
549 551 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
550 552 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
575 577 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
576 578 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
577 579 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
578 580 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
579 581 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
580 582 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
581 583 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
582 584 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
583 585 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
584 586 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
585 587 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
586 588 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
587 589 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
588 590 5.641209 GCACATCTAAGTGAGTGAATCAAGT 59.359 40.000 0.00 0.00 42.05 3.16
589 591 6.813649 GCACATCTAAGTGAGTGAATCAAGTA 59.186 38.462 0.00 0.00 42.05 2.24
590 592 7.493971 GCACATCTAAGTGAGTGAATCAAGTAT 59.506 37.037 0.00 0.00 42.05 2.12
598 600 8.367660 AGTGAGTGAATCAAGTATAAAGAGGA 57.632 34.615 0.00 0.00 40.43 3.71
599 601 8.816894 AGTGAGTGAATCAAGTATAAAGAGGAA 58.183 33.333 0.00 0.00 40.43 3.36
600 602 9.436957 GTGAGTGAATCAAGTATAAAGAGGAAA 57.563 33.333 0.00 0.00 40.43 3.13
631 633 9.810545 AAAAGAAAAAGAAAAATATCCACACGA 57.189 25.926 0.00 0.00 0.00 4.35
632 634 9.810545 AAAGAAAAAGAAAAATATCCACACGAA 57.189 25.926 0.00 0.00 0.00 3.85
633 635 9.981114 AAGAAAAAGAAAAATATCCACACGAAT 57.019 25.926 0.00 0.00 0.00 3.34
634 636 9.626045 AGAAAAAGAAAAATATCCACACGAATC 57.374 29.630 0.00 0.00 0.00 2.52
635 637 9.626045 GAAAAAGAAAAATATCCACACGAATCT 57.374 29.630 0.00 0.00 0.00 2.40
636 638 9.626045 AAAAAGAAAAATATCCACACGAATCTC 57.374 29.630 0.00 0.00 0.00 2.75
637 639 7.921786 AAGAAAAATATCCACACGAATCTCA 57.078 32.000 0.00 0.00 0.00 3.27
638 640 7.921786 AGAAAAATATCCACACGAATCTCAA 57.078 32.000 0.00 0.00 0.00 3.02
639 641 7.752695 AGAAAAATATCCACACGAATCTCAAC 58.247 34.615 0.00 0.00 0.00 3.18
640 642 5.718649 AAATATCCACACGAATCTCAACG 57.281 39.130 0.00 0.00 0.00 4.10
641 643 1.359848 ATCCACACGAATCTCAACGC 58.640 50.000 0.00 0.00 0.00 4.84
642 644 0.032815 TCCACACGAATCTCAACGCA 59.967 50.000 0.00 0.00 0.00 5.24
643 645 0.865111 CCACACGAATCTCAACGCAA 59.135 50.000 0.00 0.00 0.00 4.85
645 647 1.792367 CACACGAATCTCAACGCAAGA 59.208 47.619 0.00 0.00 43.62 3.02
646 648 2.413112 CACACGAATCTCAACGCAAGAT 59.587 45.455 0.00 0.00 43.62 2.40
647 649 2.668457 ACACGAATCTCAACGCAAGATC 59.332 45.455 0.00 0.00 43.62 2.75
648 650 2.667969 CACGAATCTCAACGCAAGATCA 59.332 45.455 0.00 0.00 43.62 2.92
649 651 3.123453 CACGAATCTCAACGCAAGATCAA 59.877 43.478 0.00 0.00 43.62 2.57
650 652 3.935203 ACGAATCTCAACGCAAGATCAAT 59.065 39.130 0.00 0.00 43.62 2.57
651 653 4.201753 ACGAATCTCAACGCAAGATCAATG 60.202 41.667 0.00 0.00 43.62 2.82
652 654 4.033243 CGAATCTCAACGCAAGATCAATGA 59.967 41.667 0.00 0.00 43.62 2.57
653 655 4.871993 ATCTCAACGCAAGATCAATGAC 57.128 40.909 0.00 0.00 43.62 3.06
654 656 3.663025 TCTCAACGCAAGATCAATGACA 58.337 40.909 0.00 0.00 43.62 3.58
655 657 4.256110 TCTCAACGCAAGATCAATGACAT 58.744 39.130 0.00 0.00 43.62 3.06
656 658 5.418676 TCTCAACGCAAGATCAATGACATA 58.581 37.500 0.00 0.00 43.62 2.29
657 659 5.521372 TCTCAACGCAAGATCAATGACATAG 59.479 40.000 0.00 0.00 43.62 2.23
658 660 4.571984 TCAACGCAAGATCAATGACATAGG 59.428 41.667 0.00 0.00 43.62 2.57
659 661 4.406648 ACGCAAGATCAATGACATAGGA 57.593 40.909 0.00 0.00 43.62 2.94
660 662 4.122776 ACGCAAGATCAATGACATAGGAC 58.877 43.478 0.00 0.00 43.62 3.85
661 663 4.141846 ACGCAAGATCAATGACATAGGACT 60.142 41.667 0.00 0.00 43.62 3.85
662 664 4.813161 CGCAAGATCAATGACATAGGACTT 59.187 41.667 0.00 0.00 43.02 3.01
663 665 5.985530 CGCAAGATCAATGACATAGGACTTA 59.014 40.000 0.00 0.00 43.02 2.24
664 666 6.145209 CGCAAGATCAATGACATAGGACTTAG 59.855 42.308 0.00 0.00 43.02 2.18
665 667 7.212976 GCAAGATCAATGACATAGGACTTAGA 58.787 38.462 0.00 0.00 0.00 2.10
666 668 7.877097 GCAAGATCAATGACATAGGACTTAGAT 59.123 37.037 0.00 0.00 0.00 1.98
667 669 9.205719 CAAGATCAATGACATAGGACTTAGATG 57.794 37.037 0.00 0.00 0.00 2.90
668 670 8.489676 AGATCAATGACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 36.52 3.06
669 671 8.366401 AGATCAATGACATAGGACTTAGATGTG 58.634 37.037 0.00 0.00 33.99 3.21
670 672 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
671 673 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
672 674 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
673 675 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
674 676 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
675 677 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
676 678 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
677 679 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
678 680 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
679 681 9.935241 CATAGGACTTAGATGTGCAATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
680 682 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
681 683 7.220030 AGGACTTAGATGTGCAATACTTATGG 58.780 38.462 0.00 0.00 0.00 2.74
682 684 6.073003 GGACTTAGATGTGCAATACTTATGGC 60.073 42.308 0.00 0.00 33.16 4.40
683 685 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
988 1001 1.660333 GCGTTTCCTTCAAAGCTGTCG 60.660 52.381 0.00 0.00 0.00 4.35
1009 1022 3.494626 CGATTGTACGGAGATGGAAATGG 59.505 47.826 0.00 0.00 0.00 3.16
1131 1144 6.152831 AGTTGATGGTATTTTTACTTCCCTGC 59.847 38.462 0.00 0.00 0.00 4.85
1134 1147 3.014623 GGTATTTTTACTTCCCTGCGCT 58.985 45.455 9.73 0.00 0.00 5.92
1151 1164 7.069950 TCCCTGCGCTATCAGATTATAATACAT 59.930 37.037 9.73 0.00 36.19 2.29
1215 1228 6.209788 GGTATAACCATCAGAACTCTCTAGGG 59.790 46.154 0.00 0.00 38.42 3.53
1300 1313 8.126700 TGTTCTTTTTACCTTCGAACATTTCTC 58.873 33.333 0.00 0.00 39.03 2.87
1459 1472 3.567164 GCCACAAGAATATGTCCCTGATG 59.433 47.826 0.00 0.00 0.00 3.07
1792 1805 1.329913 GGGAAATGGGTCCATGGTGC 61.330 60.000 12.58 6.08 39.70 5.01
1843 1856 1.742761 CGCACATGTTCTTCTGGGAT 58.257 50.000 0.00 0.00 0.00 3.85
1861 1874 4.263639 TGGGATTTGCTCTCATTGTTCTCT 60.264 41.667 0.00 0.00 25.73 3.10
1917 1930 3.132289 TCCATTCCTAGAAGTAAGGCGTG 59.868 47.826 0.00 0.00 33.84 5.34
2002 2015 7.068103 TGACATGAAATTTGTGTCACTAGGTTT 59.932 33.333 22.57 2.62 45.10 3.27
2124 2137 8.038351 TGAAATACACCTTATTCATCAGAACGA 58.962 33.333 0.00 0.00 36.39 3.85
2127 2140 4.631813 ACACCTTATTCATCAGAACGAAGC 59.368 41.667 0.00 0.00 36.39 3.86
2134 2147 3.759418 TCATCAGAACGAAGCGAGTAAG 58.241 45.455 0.00 0.00 0.00 2.34
2351 2364 6.989659 TCCCACCACGTCTTAATATATCTTC 58.010 40.000 0.00 0.00 0.00 2.87
2353 2366 6.645415 CCCACCACGTCTTAATATATCTTCAC 59.355 42.308 0.00 0.00 0.00 3.18
2378 2391 9.297037 ACAAATAAATTCCACTACTATATGGCC 57.703 33.333 0.00 0.00 35.81 5.36
2392 2405 3.319198 GGCCCTCCCAGTCGTCAA 61.319 66.667 0.00 0.00 0.00 3.18
2408 2421 4.334481 GTCGTCAAGGTTCCTTCTTTTTGA 59.666 41.667 0.60 0.00 0.00 2.69
2421 2434 6.156083 TCCTTCTTTTTGATGTTCTTTTGGGT 59.844 34.615 0.00 0.00 0.00 4.51
2486 2499 5.733620 AACATTGAATGTGAGGCTGATTT 57.266 34.783 12.09 0.00 44.07 2.17
2500 2513 6.071952 TGAGGCTGATTTTATTTCTCCAACAC 60.072 38.462 0.00 0.00 0.00 3.32
2920 2933 7.760131 ATTATCTGGAAATGATTGTTTTGCG 57.240 32.000 0.00 0.00 0.00 4.85
2977 2990 5.462034 CTGAGAAATTTCAGCCTACTTCG 57.538 43.478 19.99 0.64 38.28 3.79
3669 3682 2.104622 CCATTTGTGGGAAGCCAGTTTT 59.895 45.455 0.00 0.00 0.00 2.43
3925 3938 6.127786 GGAAGATGAAGCAAGAATTAAGCAGT 60.128 38.462 0.00 0.00 0.00 4.40
4006 4019 1.068281 GCGATGCCTCAGATCTTCAGA 59.932 52.381 0.00 0.00 0.00 3.27
4163 4176 2.035632 TGGGCATCAAGAAAACCGTTT 58.964 42.857 0.00 0.00 0.00 3.60
4529 4542 2.891191 TAGTGGGGGCTACCTTTTTG 57.109 50.000 0.84 0.00 40.03 2.44
4530 4543 0.541998 AGTGGGGGCTACCTTTTTGC 60.542 55.000 0.84 0.00 40.03 3.68
4531 4544 1.605165 TGGGGGCTACCTTTTTGCG 60.605 57.895 0.84 0.00 40.03 4.85
4532 4545 1.605451 GGGGGCTACCTTTTTGCGT 60.605 57.895 0.00 0.00 40.03 5.24
4573 4592 5.392057 GCTCCAGTTGTTATTCCAGCTTTAC 60.392 44.000 0.00 0.00 0.00 2.01
4586 4605 2.095466 CAGCTTTACGGGCGATGAAAAA 60.095 45.455 0.00 0.00 34.52 1.94
4623 4642 5.799213 ACATTCTAGTTTCCTGGTCAAGAG 58.201 41.667 0.00 0.00 0.00 2.85
4774 4797 3.252215 CCCGCTTGACTGAATTGTTGTTA 59.748 43.478 0.00 0.00 0.00 2.41
4783 4806 6.493115 TGACTGAATTGTTGTTATGAATGGGT 59.507 34.615 0.00 0.00 0.00 4.51
4838 4862 1.073706 ATCGGCCCCCTTCCATAGT 60.074 57.895 0.00 0.00 0.00 2.12
4907 4931 3.157252 GCGCTCCCATCCCTGAGA 61.157 66.667 0.00 0.00 0.00 3.27
4910 4934 1.045350 CGCTCCCATCCCTGAGAAGA 61.045 60.000 0.00 0.00 0.00 2.87
5029 5053 6.754675 TCGATCGATGCAAATAGTAAACAGAA 59.245 34.615 15.15 0.00 0.00 3.02
5030 5054 7.043391 TCGATCGATGCAAATAGTAAACAGAAG 60.043 37.037 15.15 0.00 0.00 2.85
5031 5055 7.043391 CGATCGATGCAAATAGTAAACAGAAGA 60.043 37.037 10.26 0.00 0.00 2.87
5033 5057 6.535150 TCGATGCAAATAGTAAACAGAAGAGG 59.465 38.462 0.00 0.00 0.00 3.69
5034 5058 6.313905 CGATGCAAATAGTAAACAGAAGAGGT 59.686 38.462 0.00 0.00 0.00 3.85
5036 5060 9.162764 GATGCAAATAGTAAACAGAAGAGGTAA 57.837 33.333 0.00 0.00 0.00 2.85
5037 5061 8.911918 TGCAAATAGTAAACAGAAGAGGTAAA 57.088 30.769 0.00 0.00 0.00 2.01
5038 5062 9.515226 TGCAAATAGTAAACAGAAGAGGTAAAT 57.485 29.630 0.00 0.00 0.00 1.40
5044 5068 7.970102 AGTAAACAGAAGAGGTAAATACACCA 58.030 34.615 0.00 0.00 41.40 4.17
5045 5069 8.095169 AGTAAACAGAAGAGGTAAATACACCAG 58.905 37.037 0.00 0.00 41.40 4.00
5046 5070 5.422214 ACAGAAGAGGTAAATACACCAGG 57.578 43.478 0.00 0.00 41.40 4.45
5047 5071 5.091552 ACAGAAGAGGTAAATACACCAGGA 58.908 41.667 0.00 0.00 41.40 3.86
5048 5072 5.187967 ACAGAAGAGGTAAATACACCAGGAG 59.812 44.000 0.00 0.00 41.40 3.69
5049 5073 5.187967 CAGAAGAGGTAAATACACCAGGAGT 59.812 44.000 0.00 0.00 41.40 3.85
5050 5074 5.422650 AGAAGAGGTAAATACACCAGGAGTC 59.577 44.000 0.00 0.00 41.40 3.36
5051 5075 4.684724 AGAGGTAAATACACCAGGAGTCA 58.315 43.478 0.00 0.00 41.40 3.41
5052 5076 5.281314 AGAGGTAAATACACCAGGAGTCAT 58.719 41.667 0.00 0.00 41.40 3.06
5053 5077 6.441222 AGAGGTAAATACACCAGGAGTCATA 58.559 40.000 0.00 0.00 41.40 2.15
5054 5078 6.551601 AGAGGTAAATACACCAGGAGTCATAG 59.448 42.308 0.00 0.00 41.40 2.23
5055 5079 6.441222 AGGTAAATACACCAGGAGTCATAGA 58.559 40.000 0.00 0.00 41.40 1.98
5056 5080 6.901300 AGGTAAATACACCAGGAGTCATAGAA 59.099 38.462 0.00 0.00 41.40 2.10
5057 5081 6.985059 GGTAAATACACCAGGAGTCATAGAAC 59.015 42.308 0.00 0.00 38.55 3.01
5058 5082 6.875972 AAATACACCAGGAGTCATAGAACT 57.124 37.500 0.00 0.00 0.00 3.01
5059 5083 6.875972 AATACACCAGGAGTCATAGAACTT 57.124 37.500 0.00 0.00 0.00 2.66
5060 5084 4.543590 ACACCAGGAGTCATAGAACTTG 57.456 45.455 0.00 0.00 0.00 3.16
5061 5085 3.265791 CACCAGGAGTCATAGAACTTGC 58.734 50.000 0.00 0.00 0.00 4.01
5062 5086 2.906389 ACCAGGAGTCATAGAACTTGCA 59.094 45.455 0.00 0.00 0.00 4.08
5063 5087 3.265791 CCAGGAGTCATAGAACTTGCAC 58.734 50.000 0.00 0.00 0.00 4.57
5064 5088 2.926200 CAGGAGTCATAGAACTTGCACG 59.074 50.000 0.00 0.00 0.00 5.34
5065 5089 2.563179 AGGAGTCATAGAACTTGCACGT 59.437 45.455 0.00 0.00 0.00 4.49
5066 5090 2.668457 GGAGTCATAGAACTTGCACGTG 59.332 50.000 12.28 12.28 0.00 4.49
5067 5091 3.575630 GAGTCATAGAACTTGCACGTGA 58.424 45.455 22.23 1.04 0.00 4.35
5068 5092 3.318017 AGTCATAGAACTTGCACGTGAC 58.682 45.455 22.23 11.46 35.85 3.67
5069 5093 2.090658 GTCATAGAACTTGCACGTGACG 59.909 50.000 22.23 2.24 0.00 4.35
5070 5094 1.390123 CATAGAACTTGCACGTGACGG 59.610 52.381 22.23 10.04 0.00 4.79
5071 5095 0.386476 TAGAACTTGCACGTGACGGT 59.614 50.000 22.23 10.73 0.00 4.83
5072 5096 0.874607 AGAACTTGCACGTGACGGTC 60.875 55.000 22.23 14.00 0.00 4.79
5073 5097 1.149361 GAACTTGCACGTGACGGTCA 61.149 55.000 22.23 6.76 0.00 4.02
5074 5098 1.151777 AACTTGCACGTGACGGTCAG 61.152 55.000 22.23 8.39 0.00 3.51
5075 5099 1.591594 CTTGCACGTGACGGTCAGT 60.592 57.895 22.23 9.02 0.00 3.41
5076 5100 1.151777 CTTGCACGTGACGGTCAGTT 61.152 55.000 22.23 0.00 0.00 3.16
5077 5101 0.741574 TTGCACGTGACGGTCAGTTT 60.742 50.000 22.23 0.00 0.00 2.66
5078 5102 1.275657 GCACGTGACGGTCAGTTTG 59.724 57.895 22.23 9.78 0.00 2.93
5079 5103 1.931551 CACGTGACGGTCAGTTTGG 59.068 57.895 10.90 1.68 0.00 3.28
5080 5104 0.808453 CACGTGACGGTCAGTTTGGT 60.808 55.000 10.90 2.30 0.00 3.67
5081 5105 0.746063 ACGTGACGGTCAGTTTGGTA 59.254 50.000 11.83 0.00 0.00 3.25
5082 5106 1.134226 CGTGACGGTCAGTTTGGTAC 58.866 55.000 11.83 0.00 0.00 3.34
5083 5107 1.536496 CGTGACGGTCAGTTTGGTACA 60.536 52.381 11.83 0.00 0.00 2.90
5084 5108 1.862827 GTGACGGTCAGTTTGGTACAC 59.137 52.381 11.83 0.00 39.29 2.90
5085 5109 1.481363 TGACGGTCAGTTTGGTACACA 59.519 47.619 6.76 0.00 39.29 3.72
5086 5110 2.093606 TGACGGTCAGTTTGGTACACAA 60.094 45.455 6.76 0.00 39.29 3.33
5087 5111 2.937799 GACGGTCAGTTTGGTACACAAA 59.062 45.455 2.62 0.23 46.34 2.83
5100 5124 8.838452 TTTGGTACACAAAGTTGTAAAATACG 57.162 30.769 0.00 0.00 43.81 3.06
5101 5125 7.551035 TGGTACACAAAGTTGTAAAATACGT 57.449 32.000 0.00 0.00 39.91 3.57
5102 5126 7.408123 TGGTACACAAAGTTGTAAAATACGTG 58.592 34.615 0.00 0.00 39.91 4.49
5103 5127 7.065563 TGGTACACAAAGTTGTAAAATACGTGT 59.934 33.333 0.00 0.00 40.73 4.49
5104 5128 7.909641 GGTACACAAAGTTGTAAAATACGTGTT 59.090 33.333 0.00 0.00 39.23 3.32
5105 5129 9.276397 GTACACAAAGTTGTAAAATACGTGTTT 57.724 29.630 4.25 4.25 39.23 2.83
5106 5130 8.384526 ACACAAAGTTGTAAAATACGTGTTTC 57.615 30.769 10.88 0.39 36.45 2.78
5107 5131 8.238631 ACACAAAGTTGTAAAATACGTGTTTCT 58.761 29.630 10.88 0.72 36.45 2.52
5108 5132 8.520258 CACAAAGTTGTAAAATACGTGTTTCTG 58.480 33.333 10.88 2.35 39.91 3.02
5109 5133 7.698970 ACAAAGTTGTAAAATACGTGTTTCTGG 59.301 33.333 10.88 3.19 40.16 3.86
5110 5134 6.930667 AGTTGTAAAATACGTGTTTCTGGT 57.069 33.333 10.88 0.00 0.00 4.00
5111 5135 6.951643 AGTTGTAAAATACGTGTTTCTGGTC 58.048 36.000 10.88 3.13 0.00 4.02
5112 5136 6.539464 AGTTGTAAAATACGTGTTTCTGGTCA 59.461 34.615 10.88 4.08 0.00 4.02
5113 5137 7.227910 AGTTGTAAAATACGTGTTTCTGGTCAT 59.772 33.333 10.88 0.00 0.00 3.06
5114 5138 7.124347 TGTAAAATACGTGTTTCTGGTCATC 57.876 36.000 10.88 0.00 0.00 2.92
5115 5139 6.706716 TGTAAAATACGTGTTTCTGGTCATCA 59.293 34.615 10.88 0.46 0.00 3.07
5116 5140 6.627395 AAAATACGTGTTTCTGGTCATCAA 57.373 33.333 10.88 0.00 0.00 2.57
5117 5141 6.627395 AAATACGTGTTTCTGGTCATCAAA 57.373 33.333 4.25 0.00 0.00 2.69
5118 5142 3.963383 ACGTGTTTCTGGTCATCAAAC 57.037 42.857 0.00 0.00 0.00 2.93
5119 5143 3.541632 ACGTGTTTCTGGTCATCAAACT 58.458 40.909 0.00 0.00 32.28 2.66
5120 5144 3.945285 ACGTGTTTCTGGTCATCAAACTT 59.055 39.130 0.00 0.00 32.28 2.66
5121 5145 4.201910 ACGTGTTTCTGGTCATCAAACTTG 60.202 41.667 0.00 0.00 32.28 3.16
5122 5146 4.044426 GTGTTTCTGGTCATCAAACTTGC 58.956 43.478 0.00 0.00 32.28 4.01
5123 5147 3.698539 TGTTTCTGGTCATCAAACTTGCA 59.301 39.130 0.00 0.00 32.28 4.08
5124 5148 3.988379 TTCTGGTCATCAAACTTGCAC 57.012 42.857 0.00 0.00 0.00 4.57
5125 5149 2.929641 TCTGGTCATCAAACTTGCACA 58.070 42.857 0.00 0.00 0.00 4.57
5126 5150 3.286353 TCTGGTCATCAAACTTGCACAA 58.714 40.909 0.00 0.00 0.00 3.33
5127 5151 3.698539 TCTGGTCATCAAACTTGCACAAA 59.301 39.130 0.00 0.00 0.00 2.83
5128 5152 3.779759 TGGTCATCAAACTTGCACAAAC 58.220 40.909 0.00 0.00 0.00 2.93
5129 5153 3.446873 TGGTCATCAAACTTGCACAAACT 59.553 39.130 0.00 0.00 0.00 2.66
5130 5154 4.081752 TGGTCATCAAACTTGCACAAACTT 60.082 37.500 0.00 0.00 0.00 2.66
5131 5155 4.869861 GGTCATCAAACTTGCACAAACTTT 59.130 37.500 0.00 0.00 0.00 2.66
5132 5156 5.351189 GGTCATCAAACTTGCACAAACTTTT 59.649 36.000 0.00 0.00 0.00 2.27
5133 5157 6.533367 GGTCATCAAACTTGCACAAACTTTTA 59.467 34.615 0.00 0.00 0.00 1.52
5134 5158 7.224557 GGTCATCAAACTTGCACAAACTTTTAT 59.775 33.333 0.00 0.00 0.00 1.40
5135 5159 9.243637 GTCATCAAACTTGCACAAACTTTTATA 57.756 29.630 0.00 0.00 0.00 0.98
5136 5160 9.979578 TCATCAAACTTGCACAAACTTTTATAT 57.020 25.926 0.00 0.00 0.00 0.86
5139 5163 9.388346 TCAAACTTGCACAAACTTTTATATACG 57.612 29.630 0.00 0.00 0.00 3.06
5140 5164 8.635124 CAAACTTGCACAAACTTTTATATACGG 58.365 33.333 0.00 0.00 0.00 4.02
5141 5165 7.443259 ACTTGCACAAACTTTTATATACGGT 57.557 32.000 0.00 0.00 0.00 4.83
5142 5166 7.524065 ACTTGCACAAACTTTTATATACGGTC 58.476 34.615 0.00 0.00 0.00 4.79
5143 5167 7.173562 ACTTGCACAAACTTTTATATACGGTCA 59.826 33.333 0.00 0.00 0.00 4.02
5144 5168 6.833839 TGCACAAACTTTTATATACGGTCAC 58.166 36.000 0.00 0.00 0.00 3.67
5145 5169 6.427242 TGCACAAACTTTTATATACGGTCACA 59.573 34.615 0.00 0.00 0.00 3.58
5146 5170 7.119992 TGCACAAACTTTTATATACGGTCACAT 59.880 33.333 0.00 0.00 0.00 3.21
5147 5171 7.966204 GCACAAACTTTTATATACGGTCACATT 59.034 33.333 0.00 0.00 0.00 2.71
5148 5172 9.834628 CACAAACTTTTATATACGGTCACATTT 57.165 29.630 0.00 0.00 0.00 2.32
5153 5177 9.391006 ACTTTTATATACGGTCACATTTCATGT 57.609 29.630 0.00 0.00 46.22 3.21
5156 5180 8.510132 TTATATACGGTCACATTTCATGTACG 57.490 34.615 0.00 6.36 42.70 3.67
5157 5181 3.034721 ACGGTCACATTTCATGTACGT 57.965 42.857 0.00 0.00 42.70 3.57
5158 5182 4.177165 ACGGTCACATTTCATGTACGTA 57.823 40.909 10.04 0.00 42.70 3.57
5159 5183 4.171005 ACGGTCACATTTCATGTACGTAG 58.829 43.478 0.00 0.00 42.70 3.51
5160 5184 4.082625 ACGGTCACATTTCATGTACGTAGA 60.083 41.667 0.00 0.00 42.70 2.59
5161 5185 4.264614 CGGTCACATTTCATGTACGTAGAC 59.735 45.833 0.00 0.00 42.70 2.59
5162 5186 4.264614 GGTCACATTTCATGTACGTAGACG 59.735 45.833 0.00 0.00 42.70 4.18
5179 5203 3.195041 CGTATCCGTGGCCTATGTG 57.805 57.895 3.32 0.00 0.00 3.21
5180 5204 0.319555 CGTATCCGTGGCCTATGTGG 60.320 60.000 3.32 0.00 39.35 4.17
5209 5233 3.077907 GGCCAGGCCTCACTGTAA 58.922 61.111 24.99 0.00 46.69 2.41
5210 5234 1.078143 GGCCAGGCCTCACTGTAAG 60.078 63.158 24.99 0.00 46.69 2.34
5211 5235 1.746991 GCCAGGCCTCACTGTAAGC 60.747 63.158 0.00 0.00 37.60 3.09
5212 5236 1.078143 CCAGGCCTCACTGTAAGCC 60.078 63.158 0.00 6.77 46.13 4.35
5214 5238 3.077907 GGCCTCACTGTAAGCCCA 58.922 61.111 0.00 0.00 39.60 5.36
5215 5239 1.377333 GGCCTCACTGTAAGCCCAC 60.377 63.158 0.00 0.00 39.60 4.61
5216 5240 1.377333 GCCTCACTGTAAGCCCACC 60.377 63.158 0.00 0.00 37.60 4.61
5217 5241 2.066340 CCTCACTGTAAGCCCACCA 58.934 57.895 0.00 0.00 37.60 4.17
5218 5242 0.321653 CCTCACTGTAAGCCCACCAC 60.322 60.000 0.00 0.00 37.60 4.16
5219 5243 0.670546 CTCACTGTAAGCCCACCACG 60.671 60.000 0.00 0.00 37.60 4.94
5220 5244 1.116536 TCACTGTAAGCCCACCACGA 61.117 55.000 0.00 0.00 37.60 4.35
5221 5245 0.250124 CACTGTAAGCCCACCACGAA 60.250 55.000 0.00 0.00 37.60 3.85
5222 5246 0.690762 ACTGTAAGCCCACCACGAAT 59.309 50.000 0.00 0.00 37.60 3.34
5223 5247 1.086696 CTGTAAGCCCACCACGAATG 58.913 55.000 0.00 0.00 0.00 2.67
5224 5248 4.834846 ACTGTAAGCCCACCACGAATGG 62.835 54.545 0.00 0.00 46.28 3.16
5236 5260 4.244425 CCACGAATGGTAGATCTGTAGG 57.756 50.000 5.18 0.00 41.64 3.18
5237 5261 3.553096 CCACGAATGGTAGATCTGTAGGC 60.553 52.174 5.18 0.00 41.64 3.93
5238 5262 3.319405 CACGAATGGTAGATCTGTAGGCT 59.681 47.826 5.18 0.00 0.00 4.58
5239 5263 3.961408 ACGAATGGTAGATCTGTAGGCTT 59.039 43.478 5.18 0.00 0.00 4.35
5240 5264 4.406003 ACGAATGGTAGATCTGTAGGCTTT 59.594 41.667 5.18 0.00 0.00 3.51
5241 5265 5.104900 ACGAATGGTAGATCTGTAGGCTTTT 60.105 40.000 5.18 0.00 0.00 2.27
5242 5266 5.817816 CGAATGGTAGATCTGTAGGCTTTTT 59.182 40.000 5.18 0.00 0.00 1.94
5243 5267 6.018669 CGAATGGTAGATCTGTAGGCTTTTTC 60.019 42.308 5.18 0.00 0.00 2.29
5244 5268 6.567602 ATGGTAGATCTGTAGGCTTTTTCT 57.432 37.500 5.18 0.00 0.00 2.52
5245 5269 6.374417 TGGTAGATCTGTAGGCTTTTTCTT 57.626 37.500 5.18 0.00 0.00 2.52
5246 5270 6.779860 TGGTAGATCTGTAGGCTTTTTCTTT 58.220 36.000 5.18 0.00 0.00 2.52
5247 5271 7.913789 TGGTAGATCTGTAGGCTTTTTCTTTA 58.086 34.615 5.18 0.00 0.00 1.85
5248 5272 8.548877 TGGTAGATCTGTAGGCTTTTTCTTTAT 58.451 33.333 5.18 0.00 0.00 1.40
5249 5273 9.397280 GGTAGATCTGTAGGCTTTTTCTTTATT 57.603 33.333 5.18 0.00 0.00 1.40
5253 5277 9.704098 GATCTGTAGGCTTTTTCTTTATTTACG 57.296 33.333 0.00 0.00 0.00 3.18
5254 5278 8.611654 TCTGTAGGCTTTTTCTTTATTTACGT 57.388 30.769 0.00 0.00 0.00 3.57
5255 5279 9.709495 TCTGTAGGCTTTTTCTTTATTTACGTA 57.291 29.630 0.00 0.00 0.00 3.57
5339 5363 8.635328 ACGTATAAAGCCCCTAAAATAAAATGG 58.365 33.333 0.00 0.00 0.00 3.16
5340 5364 8.852135 CGTATAAAGCCCCTAAAATAAAATGGA 58.148 33.333 0.00 0.00 0.00 3.41
5345 5369 9.821240 AAAGCCCCTAAAATAAAATGGAAAAAT 57.179 25.926 0.00 0.00 0.00 1.82
5358 5382 8.546597 AAAATGGAAAAATAAGGAATGGTTCG 57.453 30.769 0.00 0.00 0.00 3.95
5359 5383 5.652994 TGGAAAAATAAGGAATGGTTCGG 57.347 39.130 0.00 0.00 0.00 4.30
5360 5384 5.081032 TGGAAAAATAAGGAATGGTTCGGT 58.919 37.500 0.00 0.00 0.00 4.69
5361 5385 5.184287 TGGAAAAATAAGGAATGGTTCGGTC 59.816 40.000 0.00 0.00 0.00 4.79
5362 5386 5.184287 GGAAAAATAAGGAATGGTTCGGTCA 59.816 40.000 0.00 0.00 0.00 4.02
5363 5387 5.638596 AAAATAAGGAATGGTTCGGTCAC 57.361 39.130 0.00 0.00 0.00 3.67
5364 5388 3.992943 ATAAGGAATGGTTCGGTCACA 57.007 42.857 0.00 0.00 0.00 3.58
5365 5389 2.649531 AAGGAATGGTTCGGTCACAA 57.350 45.000 0.00 0.00 0.00 3.33
5366 5390 2.649531 AGGAATGGTTCGGTCACAAA 57.350 45.000 0.00 0.00 0.00 2.83
5367 5391 2.227194 AGGAATGGTTCGGTCACAAAC 58.773 47.619 0.00 0.00 0.00 2.93
5368 5392 2.158667 AGGAATGGTTCGGTCACAAACT 60.159 45.455 0.00 0.00 0.00 2.66
5369 5393 3.071892 AGGAATGGTTCGGTCACAAACTA 59.928 43.478 0.00 0.00 0.00 2.24
5370 5394 3.435671 GGAATGGTTCGGTCACAAACTAG 59.564 47.826 0.00 0.00 0.00 2.57
5371 5395 2.536761 TGGTTCGGTCACAAACTAGG 57.463 50.000 0.00 0.00 0.00 3.02
5372 5396 2.040939 TGGTTCGGTCACAAACTAGGA 58.959 47.619 0.00 0.00 0.00 2.94
5373 5397 2.435069 TGGTTCGGTCACAAACTAGGAA 59.565 45.455 0.00 0.00 0.00 3.36
5374 5398 2.804527 GGTTCGGTCACAAACTAGGAAC 59.195 50.000 0.00 0.00 34.61 3.62
5375 5399 2.427232 TCGGTCACAAACTAGGAACG 57.573 50.000 0.00 0.00 42.77 3.95
5376 5400 1.682854 TCGGTCACAAACTAGGAACGT 59.317 47.619 3.79 0.00 42.10 3.99
5377 5401 1.790623 CGGTCACAAACTAGGAACGTG 59.209 52.381 0.00 0.00 37.01 4.49
5378 5402 1.529865 GGTCACAAACTAGGAACGTGC 59.470 52.381 0.00 0.00 0.00 5.34
5379 5403 1.529865 GTCACAAACTAGGAACGTGCC 59.470 52.381 3.55 3.55 0.00 5.01
5380 5404 0.872388 CACAAACTAGGAACGTGCCC 59.128 55.000 9.68 3.73 0.00 5.36
5381 5405 0.250597 ACAAACTAGGAACGTGCCCC 60.251 55.000 9.68 0.79 0.00 5.80
5382 5406 0.036306 CAAACTAGGAACGTGCCCCT 59.964 55.000 9.68 9.29 36.60 4.79
5383 5407 1.276989 CAAACTAGGAACGTGCCCCTA 59.723 52.381 9.68 9.97 34.11 3.53
5384 5408 0.900421 AACTAGGAACGTGCCCCTAC 59.100 55.000 9.68 0.00 34.11 3.18
5385 5409 0.040794 ACTAGGAACGTGCCCCTACT 59.959 55.000 9.68 0.00 34.11 2.57
5386 5410 1.285962 ACTAGGAACGTGCCCCTACTA 59.714 52.381 9.68 0.00 34.11 1.82
5387 5411 2.291800 ACTAGGAACGTGCCCCTACTAA 60.292 50.000 9.68 0.00 34.11 2.24
5388 5412 1.192428 AGGAACGTGCCCCTACTAAG 58.808 55.000 9.68 0.00 0.00 2.18
5389 5413 0.461516 GGAACGTGCCCCTACTAAGC 60.462 60.000 0.00 0.00 0.00 3.09
5390 5414 0.535797 GAACGTGCCCCTACTAAGCT 59.464 55.000 0.00 0.00 0.00 3.74
5391 5415 0.981943 AACGTGCCCCTACTAAGCTT 59.018 50.000 3.48 3.48 0.00 3.74
5392 5416 0.249398 ACGTGCCCCTACTAAGCTTG 59.751 55.000 9.86 1.57 0.00 4.01
5393 5417 0.462047 CGTGCCCCTACTAAGCTTGG 60.462 60.000 9.86 9.13 0.00 3.61
5394 5418 0.107165 GTGCCCCTACTAAGCTTGGG 60.107 60.000 14.86 14.03 39.37 4.12
5395 5419 0.549169 TGCCCCTACTAAGCTTGGGT 60.549 55.000 17.62 14.16 38.57 4.51
5396 5420 0.624254 GCCCCTACTAAGCTTGGGTT 59.376 55.000 17.62 0.00 38.57 4.11
5397 5421 1.841919 GCCCCTACTAAGCTTGGGTTA 59.158 52.381 17.62 1.12 38.57 2.85
5398 5422 2.240414 GCCCCTACTAAGCTTGGGTTAA 59.760 50.000 17.62 0.00 38.57 2.01
5399 5423 3.882444 CCCCTACTAAGCTTGGGTTAAC 58.118 50.000 14.86 0.00 38.03 2.01
5400 5424 3.264964 CCCCTACTAAGCTTGGGTTAACA 59.735 47.826 14.86 0.00 38.03 2.41
5401 5425 4.263594 CCCCTACTAAGCTTGGGTTAACAA 60.264 45.833 14.86 0.00 38.03 2.83
5402 5426 4.698780 CCCTACTAAGCTTGGGTTAACAAC 59.301 45.833 14.86 0.09 35.13 3.32
5417 5441 6.763303 GTTAACAACCACCAAATCAATGAC 57.237 37.500 0.00 0.00 0.00 3.06
5418 5442 4.335400 AACAACCACCAAATCAATGACC 57.665 40.909 0.00 0.00 0.00 4.02
5419 5443 3.303938 ACAACCACCAAATCAATGACCA 58.696 40.909 0.00 0.00 0.00 4.02
5420 5444 3.903090 ACAACCACCAAATCAATGACCAT 59.097 39.130 0.00 0.00 0.00 3.55
5421 5445 4.347583 ACAACCACCAAATCAATGACCATT 59.652 37.500 0.00 0.00 0.00 3.16
5422 5446 5.163216 ACAACCACCAAATCAATGACCATTT 60.163 36.000 0.00 0.00 0.00 2.32
5423 5447 6.042552 ACAACCACCAAATCAATGACCATTTA 59.957 34.615 0.00 0.00 0.00 1.40
5424 5448 6.872585 ACCACCAAATCAATGACCATTTAT 57.127 33.333 0.00 0.00 0.00 1.40
5425 5449 6.642430 ACCACCAAATCAATGACCATTTATG 58.358 36.000 0.00 0.00 0.00 1.90
5426 5450 6.213195 ACCACCAAATCAATGACCATTTATGT 59.787 34.615 0.00 0.00 0.00 2.29
5427 5451 6.757947 CCACCAAATCAATGACCATTTATGTC 59.242 38.462 0.00 0.00 0.00 3.06
5428 5452 7.364056 CCACCAAATCAATGACCATTTATGTCT 60.364 37.037 0.00 0.00 0.00 3.41
5429 5453 8.685427 CACCAAATCAATGACCATTTATGTCTA 58.315 33.333 0.00 0.00 0.00 2.59
5430 5454 8.906867 ACCAAATCAATGACCATTTATGTCTAG 58.093 33.333 0.00 0.00 0.00 2.43
5431 5455 9.123902 CCAAATCAATGACCATTTATGTCTAGA 57.876 33.333 0.00 0.00 0.00 2.43
5435 5459 9.664332 ATCAATGACCATTTATGTCTAGATAGC 57.336 33.333 0.00 0.00 0.00 2.97
5436 5460 8.650490 TCAATGACCATTTATGTCTAGATAGCA 58.350 33.333 0.00 0.00 0.00 3.49
5437 5461 8.715998 CAATGACCATTTATGTCTAGATAGCAC 58.284 37.037 0.00 0.00 0.00 4.40
5438 5462 6.447162 TGACCATTTATGTCTAGATAGCACG 58.553 40.000 0.00 0.00 0.00 5.34
5439 5463 6.264518 TGACCATTTATGTCTAGATAGCACGA 59.735 38.462 0.00 0.00 0.00 4.35
5440 5464 7.050970 ACCATTTATGTCTAGATAGCACGAA 57.949 36.000 0.00 0.00 0.00 3.85
5441 5465 7.671302 ACCATTTATGTCTAGATAGCACGAAT 58.329 34.615 0.00 0.00 0.00 3.34
5442 5466 8.803235 ACCATTTATGTCTAGATAGCACGAATA 58.197 33.333 0.00 0.00 0.00 1.75
5443 5467 9.295214 CCATTTATGTCTAGATAGCACGAATAG 57.705 37.037 0.00 0.00 0.00 1.73
5444 5468 9.847706 CATTTATGTCTAGATAGCACGAATAGT 57.152 33.333 0.00 0.00 0.00 2.12
5468 5492 8.500773 AGTTTTTATATCATATAAACACGGCCG 58.499 33.333 26.86 26.86 32.48 6.13
5469 5493 6.971527 TTTATATCATATAAACACGGCCGG 57.028 37.500 31.76 20.69 0.00 6.13
5470 5494 4.811969 ATATCATATAAACACGGCCGGA 57.188 40.909 31.76 13.96 0.00 5.14
5471 5495 2.983907 TCATATAAACACGGCCGGAA 57.016 45.000 31.76 9.96 0.00 4.30
5472 5496 3.263489 TCATATAAACACGGCCGGAAA 57.737 42.857 31.76 10.36 0.00 3.13
5473 5497 3.607741 TCATATAAACACGGCCGGAAAA 58.392 40.909 31.76 11.17 0.00 2.29
5474 5498 4.200874 TCATATAAACACGGCCGGAAAAT 58.799 39.130 31.76 17.62 0.00 1.82
5475 5499 4.273969 TCATATAAACACGGCCGGAAAATC 59.726 41.667 31.76 0.00 0.00 2.17
5476 5500 1.893544 TAAACACGGCCGGAAAATCA 58.106 45.000 31.76 4.97 0.00 2.57
5477 5501 1.033574 AAACACGGCCGGAAAATCAA 58.966 45.000 31.76 0.00 0.00 2.57
5478 5502 1.033574 AACACGGCCGGAAAATCAAA 58.966 45.000 31.76 0.00 0.00 2.69
5479 5503 1.253100 ACACGGCCGGAAAATCAAAT 58.747 45.000 31.76 0.00 0.00 2.32
5480 5504 1.616374 ACACGGCCGGAAAATCAAATT 59.384 42.857 31.76 0.00 0.00 1.82
5481 5505 2.036604 ACACGGCCGGAAAATCAAATTT 59.963 40.909 31.76 0.00 0.00 1.82
5482 5506 2.411409 CACGGCCGGAAAATCAAATTTG 59.589 45.455 31.76 12.15 31.77 2.32
5483 5507 1.393196 CGGCCGGAAAATCAAATTTGC 59.607 47.619 20.10 0.00 31.77 3.68
5484 5508 2.421619 GGCCGGAAAATCAAATTTGCA 58.578 42.857 13.54 3.26 30.89 4.08
5485 5509 2.810852 GGCCGGAAAATCAAATTTGCAA 59.189 40.909 13.54 0.00 30.89 4.08
5486 5510 3.120234 GGCCGGAAAATCAAATTTGCAAG 60.120 43.478 13.54 0.94 30.89 4.01
5487 5511 3.745458 GCCGGAAAATCAAATTTGCAAGA 59.255 39.130 13.54 0.00 30.89 3.02
5488 5512 4.213059 GCCGGAAAATCAAATTTGCAAGAA 59.787 37.500 13.54 0.00 30.89 2.52
5489 5513 5.277731 GCCGGAAAATCAAATTTGCAAGAAA 60.278 36.000 13.54 0.00 30.89 2.52
5490 5514 6.568271 GCCGGAAAATCAAATTTGCAAGAAAT 60.568 34.615 13.54 0.00 30.89 2.17
5491 5515 6.797995 CCGGAAAATCAAATTTGCAAGAAATG 59.202 34.615 13.54 0.00 30.89 2.32
5492 5516 7.354257 CGGAAAATCAAATTTGCAAGAAATGT 58.646 30.769 13.54 0.00 30.89 2.71
5493 5517 8.494347 CGGAAAATCAAATTTGCAAGAAATGTA 58.506 29.630 13.54 0.00 30.89 2.29
5498 5522 7.903995 TCAAATTTGCAAGAAATGTAATCCC 57.096 32.000 13.54 0.00 33.42 3.85
5499 5523 7.448420 TCAAATTTGCAAGAAATGTAATCCCA 58.552 30.769 13.54 0.00 33.42 4.37
5500 5524 7.935755 TCAAATTTGCAAGAAATGTAATCCCAA 59.064 29.630 13.54 0.00 33.42 4.12
5501 5525 8.566260 CAAATTTGCAAGAAATGTAATCCCAAA 58.434 29.630 5.01 0.00 33.42 3.28
5502 5526 8.688747 AATTTGCAAGAAATGTAATCCCAAAA 57.311 26.923 0.00 0.00 33.42 2.44
5503 5527 8.688747 ATTTGCAAGAAATGTAATCCCAAAAA 57.311 26.923 0.00 0.00 33.42 1.94
5504 5528 7.727331 TTGCAAGAAATGTAATCCCAAAAAG 57.273 32.000 0.00 0.00 0.00 2.27
5505 5529 7.060383 TGCAAGAAATGTAATCCCAAAAAGA 57.940 32.000 0.00 0.00 0.00 2.52
5506 5530 7.153985 TGCAAGAAATGTAATCCCAAAAAGAG 58.846 34.615 0.00 0.00 0.00 2.85
5507 5531 6.591448 GCAAGAAATGTAATCCCAAAAAGAGG 59.409 38.462 0.00 0.00 0.00 3.69
5508 5532 7.525360 GCAAGAAATGTAATCCCAAAAAGAGGA 60.525 37.037 0.00 0.00 36.36 3.71
5509 5533 7.709149 AGAAATGTAATCCCAAAAAGAGGAG 57.291 36.000 0.00 0.00 35.08 3.69
5510 5534 5.921962 AATGTAATCCCAAAAAGAGGAGC 57.078 39.130 0.00 0.00 35.08 4.70
5511 5535 4.380843 TGTAATCCCAAAAAGAGGAGCA 57.619 40.909 0.00 0.00 35.08 4.26
5512 5536 4.079253 TGTAATCCCAAAAAGAGGAGCAC 58.921 43.478 0.00 0.00 35.08 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 3.916172 CAGATGAAAAGGTGCAATTGACG 59.084 43.478 10.34 0.00 0.00 4.35
101 103 4.874970 ACAGATGAAAAGGTGCAATTGAC 58.125 39.130 10.34 4.61 0.00 3.18
109 111 5.749596 TGTTGTGTACAGATGAAAAGGTG 57.250 39.130 0.00 0.00 31.68 4.00
150 152 5.878332 TCATTCTGTACAATTTGATGCGT 57.122 34.783 2.79 0.00 0.00 5.24
407 409 8.023021 AGCTAACAGGTTAGATGATATGTTCA 57.977 34.615 20.34 0.00 43.90 3.18
525 527 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
529 531 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
551 553 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
552 554 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
553 555 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
554 556 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
555 557 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
556 558 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
557 559 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
558 560 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
559 561 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
560 562 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
561 563 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
562 564 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
563 565 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
564 566 5.641209 ACTTGATTCACTCACTTAGATGTGC 59.359 40.000 0.00 0.00 37.81 4.57
565 567 8.939201 ATACTTGATTCACTCACTTAGATGTG 57.061 34.615 0.00 0.00 39.15 3.21
572 574 8.816894 TCCTCTTTATACTTGATTCACTCACTT 58.183 33.333 0.00 0.00 32.17 3.16
573 575 8.367660 TCCTCTTTATACTTGATTCACTCACT 57.632 34.615 0.00 0.00 32.17 3.41
574 576 9.436957 TTTCCTCTTTATACTTGATTCACTCAC 57.563 33.333 0.00 0.00 32.17 3.51
605 607 9.810545 TCGTGTGGATATTTTTCTTTTTCTTTT 57.189 25.926 0.00 0.00 0.00 2.27
606 608 9.810545 TTCGTGTGGATATTTTTCTTTTTCTTT 57.189 25.926 0.00 0.00 0.00 2.52
607 609 9.981114 ATTCGTGTGGATATTTTTCTTTTTCTT 57.019 25.926 0.00 0.00 0.00 2.52
608 610 9.626045 GATTCGTGTGGATATTTTTCTTTTTCT 57.374 29.630 0.00 0.00 0.00 2.52
609 611 9.626045 AGATTCGTGTGGATATTTTTCTTTTTC 57.374 29.630 0.00 0.00 0.00 2.29
610 612 9.626045 GAGATTCGTGTGGATATTTTTCTTTTT 57.374 29.630 0.00 0.00 0.00 1.94
611 613 8.792633 TGAGATTCGTGTGGATATTTTTCTTTT 58.207 29.630 0.00 0.00 0.00 2.27
612 614 8.335532 TGAGATTCGTGTGGATATTTTTCTTT 57.664 30.769 0.00 0.00 0.00 2.52
613 615 7.921786 TGAGATTCGTGTGGATATTTTTCTT 57.078 32.000 0.00 0.00 0.00 2.52
614 616 7.413000 CGTTGAGATTCGTGTGGATATTTTTCT 60.413 37.037 0.00 0.00 0.00 2.52
615 617 6.682863 CGTTGAGATTCGTGTGGATATTTTTC 59.317 38.462 0.00 0.00 0.00 2.29
616 618 6.542852 CGTTGAGATTCGTGTGGATATTTTT 58.457 36.000 0.00 0.00 0.00 1.94
617 619 5.447279 GCGTTGAGATTCGTGTGGATATTTT 60.447 40.000 0.00 0.00 0.00 1.82
618 620 4.034048 GCGTTGAGATTCGTGTGGATATTT 59.966 41.667 0.00 0.00 0.00 1.40
619 621 3.555956 GCGTTGAGATTCGTGTGGATATT 59.444 43.478 0.00 0.00 0.00 1.28
620 622 3.123804 GCGTTGAGATTCGTGTGGATAT 58.876 45.455 0.00 0.00 0.00 1.63
621 623 2.094442 TGCGTTGAGATTCGTGTGGATA 60.094 45.455 0.00 0.00 0.00 2.59
622 624 1.337728 TGCGTTGAGATTCGTGTGGAT 60.338 47.619 0.00 0.00 0.00 3.41
623 625 0.032815 TGCGTTGAGATTCGTGTGGA 59.967 50.000 0.00 0.00 0.00 4.02
624 626 0.865111 TTGCGTTGAGATTCGTGTGG 59.135 50.000 0.00 0.00 0.00 4.17
625 627 1.792367 TCTTGCGTTGAGATTCGTGTG 59.208 47.619 0.00 0.00 0.00 3.82
626 628 2.148916 TCTTGCGTTGAGATTCGTGT 57.851 45.000 0.00 0.00 0.00 4.49
627 629 2.667969 TGATCTTGCGTTGAGATTCGTG 59.332 45.455 0.00 0.00 34.13 4.35
628 630 2.959516 TGATCTTGCGTTGAGATTCGT 58.040 42.857 0.00 0.00 34.13 3.85
629 631 3.997319 TTGATCTTGCGTTGAGATTCG 57.003 42.857 0.00 0.00 34.13 3.34
630 632 5.163824 TGTCATTGATCTTGCGTTGAGATTC 60.164 40.000 0.00 0.00 34.13 2.52
631 633 4.696877 TGTCATTGATCTTGCGTTGAGATT 59.303 37.500 0.00 0.00 34.13 2.40
632 634 4.256110 TGTCATTGATCTTGCGTTGAGAT 58.744 39.130 0.00 0.00 36.60 2.75
633 635 3.663025 TGTCATTGATCTTGCGTTGAGA 58.337 40.909 0.00 0.00 0.00 3.27
634 636 4.611310 ATGTCATTGATCTTGCGTTGAG 57.389 40.909 0.00 0.00 0.00 3.02
635 637 4.571984 CCTATGTCATTGATCTTGCGTTGA 59.428 41.667 0.00 0.00 0.00 3.18
636 638 4.571984 TCCTATGTCATTGATCTTGCGTTG 59.428 41.667 0.00 0.00 0.00 4.10
637 639 4.572389 GTCCTATGTCATTGATCTTGCGTT 59.428 41.667 0.00 0.00 0.00 4.84
638 640 4.122776 GTCCTATGTCATTGATCTTGCGT 58.877 43.478 0.00 0.00 0.00 5.24
639 641 4.375272 AGTCCTATGTCATTGATCTTGCG 58.625 43.478 0.00 0.00 0.00 4.85
640 642 7.212976 TCTAAGTCCTATGTCATTGATCTTGC 58.787 38.462 0.00 0.00 0.00 4.01
641 643 9.205719 CATCTAAGTCCTATGTCATTGATCTTG 57.794 37.037 0.00 0.00 0.00 3.02
642 644 8.932610 ACATCTAAGTCCTATGTCATTGATCTT 58.067 33.333 0.00 0.82 0.00 2.40
643 645 8.366401 CACATCTAAGTCCTATGTCATTGATCT 58.634 37.037 0.00 0.00 31.60 2.75
644 646 7.117523 GCACATCTAAGTCCTATGTCATTGATC 59.882 40.741 0.00 0.00 31.60 2.92
645 647 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
646 648 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
647 649 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
648 650 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
649 651 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
650 652 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
651 653 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
652 654 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
653 655 9.935241 ATAAGTATTGCACATCTAAGTCCTATG 57.065 33.333 0.00 0.00 0.00 2.23
654 656 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
655 657 8.367911 CCATAAGTATTGCACATCTAAGTCCTA 58.632 37.037 0.00 0.00 0.00 2.94
656 658 7.220030 CCATAAGTATTGCACATCTAAGTCCT 58.780 38.462 0.00 0.00 0.00 3.85
657 659 6.073003 GCCATAAGTATTGCACATCTAAGTCC 60.073 42.308 0.00 0.00 0.00 3.85
658 660 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
659 661 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
660 662 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
668 670 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
669 671 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
717 719 9.768662 GGAATATCAAAGGCAATTGTTATGATT 57.231 29.630 17.19 7.08 29.84 2.57
718 720 9.151177 AGGAATATCAAAGGCAATTGTTATGAT 57.849 29.630 7.40 13.41 29.84 2.45
920 933 4.015084 CTGGAATGAGGAACAGAAAGCAT 58.985 43.478 0.00 0.00 32.86 3.79
932 945 1.004044 AGTGACTTGGCTGGAATGAGG 59.996 52.381 0.00 0.00 0.00 3.86
988 1001 3.251004 GCCATTTCCATCTCCGTACAATC 59.749 47.826 0.00 0.00 0.00 2.67
1009 1022 4.469657 TGTCCATACAATAATTCAGGGGC 58.530 43.478 0.00 0.00 30.91 5.80
1100 1113 6.866480 AGTAAAAATACCATCAACTGCATGG 58.134 36.000 1.63 1.63 45.74 3.66
1300 1313 0.520404 GCCTGTGAGAGCAACATGTG 59.480 55.000 0.00 0.00 0.00 3.21
1459 1472 0.035056 ACTTGGCATGTAGGGTCAGC 60.035 55.000 3.94 0.00 0.00 4.26
1728 1741 4.559153 AGTTATGCAACTGAACAATTGGC 58.441 39.130 10.83 2.00 43.50 4.52
1792 1805 4.018779 TGGGGTATGAAGAGGTTTAACAGG 60.019 45.833 0.00 0.00 0.00 4.00
1843 1856 6.753279 CACAAAAAGAGAACAATGAGAGCAAA 59.247 34.615 0.00 0.00 0.00 3.68
1861 1874 1.484038 AACAGCAGGCCTCACAAAAA 58.516 45.000 0.00 0.00 0.00 1.94
1889 1902 5.011227 CCTTACTTCTAGGAATGGAGGTAGC 59.989 48.000 0.00 0.00 34.56 3.58
1917 1930 6.747659 ATGCATGTCTTAACGAAACAAAAC 57.252 33.333 0.00 0.00 0.00 2.43
2122 2135 4.030134 AGGATGTTACTTACTCGCTTCG 57.970 45.455 0.00 0.00 0.00 3.79
2124 2137 4.705507 TCAGAGGATGTTACTTACTCGCTT 59.294 41.667 5.06 0.00 33.58 4.68
2127 2140 6.030849 CAGTTCAGAGGATGTTACTTACTCG 58.969 44.000 5.06 1.75 33.58 4.18
2134 2147 6.260050 TCAACAAACAGTTCAGAGGATGTTAC 59.740 38.462 0.00 0.00 38.74 2.50
2353 2366 8.739972 GGGCCATATAGTAGTGGAATTTATTTG 58.260 37.037 4.39 0.00 37.72 2.32
2378 2391 0.037232 GAACCTTGACGACTGGGAGG 60.037 60.000 0.00 0.00 0.00 4.30
2392 2405 7.423844 AAAGAACATCAAAAAGAAGGAACCT 57.576 32.000 0.00 0.00 0.00 3.50
2408 2421 6.553953 AAAGTTACCAACCCAAAAGAACAT 57.446 33.333 0.00 0.00 0.00 2.71
2421 2434 4.436242 TGCAACGTTGAAAAGTTACCAA 57.564 36.364 31.62 0.00 0.00 3.67
2460 2473 6.048732 TCAGCCTCACATTCAATGTTACTA 57.951 37.500 0.00 0.00 42.70 1.82
2486 2499 7.499321 ACAAATACACGTGTTGGAGAAATAA 57.501 32.000 28.55 4.51 0.00 1.40
2500 2513 5.177881 TGGCTAGTAACACAACAAATACACG 59.822 40.000 0.00 0.00 0.00 4.49
2977 2990 3.988517 CCTTTAGTTGACCACTCGACTTC 59.011 47.826 0.00 0.00 40.99 3.01
3107 3120 6.990349 CCGTTGTATTGGTCAGGTCTTATAAT 59.010 38.462 0.00 0.00 0.00 1.28
3669 3682 8.663167 AGTATTCACTTGATATTCCATGGATCA 58.337 33.333 17.06 13.97 0.00 2.92
3925 3938 1.421268 ACTCAACTTGGACCATCTGCA 59.579 47.619 0.00 0.00 0.00 4.41
4163 4176 6.788598 TTTCATTATCCTGCTTGCCATAAA 57.211 33.333 0.00 0.00 0.00 1.40
4509 4522 2.820105 GCAAAAAGGTAGCCCCCACTAA 60.820 50.000 0.00 0.00 0.00 2.24
4529 4542 0.321996 AGGACCAGGAAGAGAAACGC 59.678 55.000 0.00 0.00 0.00 4.84
4530 4543 1.941668 GCAGGACCAGGAAGAGAAACG 60.942 57.143 0.00 0.00 0.00 3.60
4531 4544 1.349357 AGCAGGACCAGGAAGAGAAAC 59.651 52.381 0.00 0.00 0.00 2.78
4532 4545 1.625818 GAGCAGGACCAGGAAGAGAAA 59.374 52.381 0.00 0.00 0.00 2.52
4573 4592 3.058224 AGTCTTTTCTTTTTCATCGCCCG 60.058 43.478 0.00 0.00 0.00 6.13
4623 4642 8.710835 TCCTTTCCAAAATAAAACAACTGTTC 57.289 30.769 0.00 0.00 37.25 3.18
4628 4647 8.773645 CATCCTTCCTTTCCAAAATAAAACAAC 58.226 33.333 0.00 0.00 0.00 3.32
4629 4648 7.936301 CCATCCTTCCTTTCCAAAATAAAACAA 59.064 33.333 0.00 0.00 0.00 2.83
4630 4649 7.291182 TCCATCCTTCCTTTCCAAAATAAAACA 59.709 33.333 0.00 0.00 0.00 2.83
4699 4721 8.082242 CCCGTTTACTTTCATCTTCATTCTTTT 58.918 33.333 0.00 0.00 0.00 2.27
4774 4797 2.498481 CACCAAAGCATCACCCATTCAT 59.502 45.455 0.00 0.00 0.00 2.57
4783 4806 1.073025 AGGCGACACCAAAGCATCA 59.927 52.632 0.00 0.00 43.14 3.07
4838 4862 4.830765 GGGCAGGCGCATCGTACA 62.831 66.667 10.83 0.00 41.24 2.90
4907 4931 0.250513 GAGCCAATCCACCGTCTCTT 59.749 55.000 0.00 0.00 0.00 2.85
4910 4934 2.579201 CGAGCCAATCCACCGTCT 59.421 61.111 0.00 0.00 0.00 4.18
5029 5053 4.684724 TGACTCCTGGTGTATTTACCTCT 58.315 43.478 0.65 0.00 41.43 3.69
5030 5054 5.615925 ATGACTCCTGGTGTATTTACCTC 57.384 43.478 0.65 0.00 41.43 3.85
5031 5055 6.441222 TCTATGACTCCTGGTGTATTTACCT 58.559 40.000 0.65 0.00 41.43 3.08
5033 5057 7.783042 AGTTCTATGACTCCTGGTGTATTTAC 58.217 38.462 0.65 0.00 0.00 2.01
5034 5058 7.973048 AGTTCTATGACTCCTGGTGTATTTA 57.027 36.000 0.65 0.00 0.00 1.40
5036 5060 6.644347 CAAGTTCTATGACTCCTGGTGTATT 58.356 40.000 0.65 0.00 0.00 1.89
5037 5061 5.395768 GCAAGTTCTATGACTCCTGGTGTAT 60.396 44.000 0.65 0.00 0.00 2.29
5038 5062 4.081642 GCAAGTTCTATGACTCCTGGTGTA 60.082 45.833 0.65 0.00 0.00 2.90
5039 5063 3.307059 GCAAGTTCTATGACTCCTGGTGT 60.307 47.826 0.14 0.14 0.00 4.16
5040 5064 3.265791 GCAAGTTCTATGACTCCTGGTG 58.734 50.000 0.00 0.00 0.00 4.17
5041 5065 2.906389 TGCAAGTTCTATGACTCCTGGT 59.094 45.455 0.00 0.00 0.00 4.00
5042 5066 3.265791 GTGCAAGTTCTATGACTCCTGG 58.734 50.000 0.00 0.00 0.00 4.45
5043 5067 2.926200 CGTGCAAGTTCTATGACTCCTG 59.074 50.000 0.00 0.00 0.00 3.86
5044 5068 2.563179 ACGTGCAAGTTCTATGACTCCT 59.437 45.455 0.00 0.00 0.00 3.69
5045 5069 2.668457 CACGTGCAAGTTCTATGACTCC 59.332 50.000 0.82 0.00 0.00 3.85
5046 5070 3.365220 GTCACGTGCAAGTTCTATGACTC 59.635 47.826 11.67 0.00 33.74 3.36
5047 5071 3.318017 GTCACGTGCAAGTTCTATGACT 58.682 45.455 11.67 0.00 33.74 3.41
5048 5072 2.090658 CGTCACGTGCAAGTTCTATGAC 59.909 50.000 11.67 6.41 33.30 3.06
5049 5073 2.324860 CGTCACGTGCAAGTTCTATGA 58.675 47.619 11.67 0.00 0.00 2.15
5050 5074 1.390123 CCGTCACGTGCAAGTTCTATG 59.610 52.381 11.67 0.00 0.00 2.23
5051 5075 1.000506 ACCGTCACGTGCAAGTTCTAT 59.999 47.619 11.67 0.00 0.00 1.98
5052 5076 0.386476 ACCGTCACGTGCAAGTTCTA 59.614 50.000 11.67 0.00 0.00 2.10
5053 5077 0.874607 GACCGTCACGTGCAAGTTCT 60.875 55.000 11.67 0.00 0.00 3.01
5054 5078 1.149361 TGACCGTCACGTGCAAGTTC 61.149 55.000 11.67 3.12 0.00 3.01
5055 5079 1.151777 CTGACCGTCACGTGCAAGTT 61.152 55.000 11.67 0.00 0.00 2.66
5056 5080 1.591594 CTGACCGTCACGTGCAAGT 60.592 57.895 11.67 7.30 0.00 3.16
5057 5081 1.151777 AACTGACCGTCACGTGCAAG 61.152 55.000 11.67 3.73 0.00 4.01
5058 5082 0.741574 AAACTGACCGTCACGTGCAA 60.742 50.000 11.67 0.00 0.00 4.08
5059 5083 1.153529 AAACTGACCGTCACGTGCA 60.154 52.632 11.67 1.22 0.00 4.57
5060 5084 1.275657 CAAACTGACCGTCACGTGC 59.724 57.895 11.67 5.23 0.00 5.34
5061 5085 0.808453 ACCAAACTGACCGTCACGTG 60.808 55.000 9.94 9.94 0.00 4.49
5062 5086 0.746063 TACCAAACTGACCGTCACGT 59.254 50.000 0.00 0.00 0.00 4.49
5063 5087 1.134226 GTACCAAACTGACCGTCACG 58.866 55.000 0.00 0.00 0.00 4.35
5064 5088 1.862827 GTGTACCAAACTGACCGTCAC 59.137 52.381 0.00 0.00 0.00 3.67
5065 5089 1.481363 TGTGTACCAAACTGACCGTCA 59.519 47.619 0.29 0.29 0.00 4.35
5066 5090 2.228138 TGTGTACCAAACTGACCGTC 57.772 50.000 0.00 0.00 0.00 4.79
5067 5091 2.695127 TTGTGTACCAAACTGACCGT 57.305 45.000 0.00 0.00 0.00 4.83
5068 5092 2.940410 ACTTTGTGTACCAAACTGACCG 59.060 45.455 5.67 0.23 38.12 4.79
5069 5093 4.157105 ACAACTTTGTGTACCAAACTGACC 59.843 41.667 14.47 0.00 40.49 4.02
5070 5094 5.305139 ACAACTTTGTGTACCAAACTGAC 57.695 39.130 14.47 0.00 40.49 3.51
5071 5095 7.450124 TTTACAACTTTGTGTACCAAACTGA 57.550 32.000 4.82 0.00 42.31 3.41
5072 5096 8.696410 ATTTTACAACTTTGTGTACCAAACTG 57.304 30.769 4.82 8.16 42.31 3.16
5073 5097 9.791820 GTATTTTACAACTTTGTGTACCAAACT 57.208 29.630 4.82 0.00 42.31 2.66
5074 5098 8.735837 CGTATTTTACAACTTTGTGTACCAAAC 58.264 33.333 4.82 0.00 42.31 2.93
5075 5099 8.457261 ACGTATTTTACAACTTTGTGTACCAAA 58.543 29.630 4.82 8.58 42.31 3.28
5076 5100 7.909121 CACGTATTTTACAACTTTGTGTACCAA 59.091 33.333 4.82 0.00 42.31 3.67
5077 5101 7.065563 ACACGTATTTTACAACTTTGTGTACCA 59.934 33.333 4.82 0.00 42.31 3.25
5078 5102 7.408910 ACACGTATTTTACAACTTTGTGTACC 58.591 34.615 4.82 0.00 42.31 3.34
5079 5103 8.825064 AACACGTATTTTACAACTTTGTGTAC 57.175 30.769 4.82 2.89 42.31 2.90
5080 5104 9.488124 GAAACACGTATTTTACAACTTTGTGTA 57.512 29.630 4.82 0.00 42.31 2.90
5081 5105 8.238631 AGAAACACGTATTTTACAACTTTGTGT 58.761 29.630 4.82 0.00 42.31 3.72
5082 5106 8.520258 CAGAAACACGTATTTTACAACTTTGTG 58.480 33.333 4.82 0.00 42.31 3.33
5083 5107 7.698970 CCAGAAACACGTATTTTACAACTTTGT 59.301 33.333 0.00 0.00 44.86 2.83
5084 5108 7.698970 ACCAGAAACACGTATTTTACAACTTTG 59.301 33.333 0.00 0.00 0.00 2.77
5085 5109 7.764331 ACCAGAAACACGTATTTTACAACTTT 58.236 30.769 0.00 0.00 0.00 2.66
5086 5110 7.066043 TGACCAGAAACACGTATTTTACAACTT 59.934 33.333 0.00 0.00 0.00 2.66
5087 5111 6.539464 TGACCAGAAACACGTATTTTACAACT 59.461 34.615 0.00 0.00 0.00 3.16
5088 5112 6.717413 TGACCAGAAACACGTATTTTACAAC 58.283 36.000 0.00 0.00 0.00 3.32
5089 5113 6.922247 TGACCAGAAACACGTATTTTACAA 57.078 33.333 0.00 0.00 0.00 2.41
5090 5114 6.706716 TGATGACCAGAAACACGTATTTTACA 59.293 34.615 0.00 0.00 0.00 2.41
5091 5115 7.124347 TGATGACCAGAAACACGTATTTTAC 57.876 36.000 0.00 0.00 0.00 2.01
5092 5116 7.731882 TTGATGACCAGAAACACGTATTTTA 57.268 32.000 0.00 0.00 0.00 1.52
5093 5117 6.627395 TTGATGACCAGAAACACGTATTTT 57.373 33.333 0.00 0.00 0.00 1.82
5094 5118 6.262273 AGTTTGATGACCAGAAACACGTATTT 59.738 34.615 0.00 0.00 32.96 1.40
5095 5119 5.763204 AGTTTGATGACCAGAAACACGTATT 59.237 36.000 0.00 0.00 32.96 1.89
5096 5120 5.305585 AGTTTGATGACCAGAAACACGTAT 58.694 37.500 0.00 0.00 32.96 3.06
5097 5121 4.699637 AGTTTGATGACCAGAAACACGTA 58.300 39.130 0.00 0.00 32.96 3.57
5098 5122 3.541632 AGTTTGATGACCAGAAACACGT 58.458 40.909 0.00 0.00 32.96 4.49
5099 5123 4.282068 CAAGTTTGATGACCAGAAACACG 58.718 43.478 0.00 0.00 32.96 4.49
5100 5124 4.044426 GCAAGTTTGATGACCAGAAACAC 58.956 43.478 0.00 0.00 32.96 3.32
5101 5125 3.698539 TGCAAGTTTGATGACCAGAAACA 59.301 39.130 0.00 0.00 32.96 2.83
5102 5126 4.044426 GTGCAAGTTTGATGACCAGAAAC 58.956 43.478 0.00 0.00 0.00 2.78
5103 5127 3.698539 TGTGCAAGTTTGATGACCAGAAA 59.301 39.130 0.00 0.00 0.00 2.52
5104 5128 3.286353 TGTGCAAGTTTGATGACCAGAA 58.714 40.909 0.00 0.00 0.00 3.02
5105 5129 2.929641 TGTGCAAGTTTGATGACCAGA 58.070 42.857 0.00 0.00 0.00 3.86
5106 5130 3.713858 TTGTGCAAGTTTGATGACCAG 57.286 42.857 0.00 0.00 0.00 4.00
5107 5131 3.446873 AGTTTGTGCAAGTTTGATGACCA 59.553 39.130 0.00 0.00 0.00 4.02
5108 5132 4.045636 AGTTTGTGCAAGTTTGATGACC 57.954 40.909 0.00 0.00 0.00 4.02
5109 5133 6.407475 AAAAGTTTGTGCAAGTTTGATGAC 57.593 33.333 0.00 0.00 37.95 3.06
5110 5134 9.979578 ATATAAAAGTTTGTGCAAGTTTGATGA 57.020 25.926 0.00 0.00 37.95 2.92
5113 5137 9.388346 CGTATATAAAAGTTTGTGCAAGTTTGA 57.612 29.630 0.00 0.00 37.95 2.69
5114 5138 8.635124 CCGTATATAAAAGTTTGTGCAAGTTTG 58.365 33.333 0.00 0.00 37.95 2.93
5115 5139 8.354426 ACCGTATATAAAAGTTTGTGCAAGTTT 58.646 29.630 0.00 0.00 39.36 2.66
5116 5140 7.878036 ACCGTATATAAAAGTTTGTGCAAGTT 58.122 30.769 0.00 0.00 0.00 2.66
5117 5141 7.173562 TGACCGTATATAAAAGTTTGTGCAAGT 59.826 33.333 0.00 0.00 0.00 3.16
5118 5142 7.480542 GTGACCGTATATAAAAGTTTGTGCAAG 59.519 37.037 0.00 0.00 0.00 4.01
5119 5143 7.041303 TGTGACCGTATATAAAAGTTTGTGCAA 60.041 33.333 0.00 0.00 0.00 4.08
5120 5144 6.427242 TGTGACCGTATATAAAAGTTTGTGCA 59.573 34.615 0.00 0.00 0.00 4.57
5121 5145 6.833839 TGTGACCGTATATAAAAGTTTGTGC 58.166 36.000 0.00 0.00 0.00 4.57
5122 5146 9.834628 AAATGTGACCGTATATAAAAGTTTGTG 57.165 29.630 0.00 0.00 0.00 3.33
5162 5186 3.606886 CCACATAGGCCACGGATAC 57.393 57.895 5.01 0.00 0.00 2.24
5172 5196 0.826256 ATGCTGGCATGCCACATAGG 60.826 55.000 34.25 26.84 41.89 2.57
5173 5197 0.313987 CATGCTGGCATGCCACATAG 59.686 55.000 34.41 27.33 45.71 2.23
5174 5198 2.421220 CATGCTGGCATGCCACATA 58.579 52.632 34.41 25.49 45.71 2.29
5175 5199 3.216237 CATGCTGGCATGCCACAT 58.784 55.556 35.59 33.30 45.71 3.21
5193 5217 1.746991 GCTTACAGTGAGGCCTGGC 60.747 63.158 12.00 11.05 36.75 4.85
5194 5218 1.078143 GGCTTACAGTGAGGCCTGG 60.078 63.158 12.00 0.00 41.20 4.45
5195 5219 4.625800 GGCTTACAGTGAGGCCTG 57.374 61.111 12.00 0.00 41.20 4.85
5198 5222 1.377333 GGTGGGCTTACAGTGAGGC 60.377 63.158 10.26 10.26 38.83 4.70
5199 5223 0.321653 GTGGTGGGCTTACAGTGAGG 60.322 60.000 0.00 0.00 0.00 3.86
5200 5224 0.670546 CGTGGTGGGCTTACAGTGAG 60.671 60.000 0.00 0.00 0.00 3.51
5201 5225 1.116536 TCGTGGTGGGCTTACAGTGA 61.117 55.000 0.00 0.00 0.00 3.41
5202 5226 0.250124 TTCGTGGTGGGCTTACAGTG 60.250 55.000 0.00 0.00 0.00 3.66
5203 5227 0.690762 ATTCGTGGTGGGCTTACAGT 59.309 50.000 0.00 0.00 0.00 3.55
5204 5228 1.086696 CATTCGTGGTGGGCTTACAG 58.913 55.000 0.00 0.00 0.00 2.74
5205 5229 0.322098 CCATTCGTGGTGGGCTTACA 60.322 55.000 0.00 0.00 32.98 2.41
5206 5230 0.322187 ACCATTCGTGGTGGGCTTAC 60.322 55.000 0.00 0.00 41.33 2.34
5207 5231 1.208535 CTACCATTCGTGGTGGGCTTA 59.791 52.381 10.23 0.00 43.03 3.09
5208 5232 0.035439 CTACCATTCGTGGTGGGCTT 60.035 55.000 10.23 0.00 43.03 4.35
5209 5233 0.907704 TCTACCATTCGTGGTGGGCT 60.908 55.000 10.23 0.00 43.03 5.19
5210 5234 0.180406 ATCTACCATTCGTGGTGGGC 59.820 55.000 10.23 0.00 43.03 5.36
5211 5235 1.762957 AGATCTACCATTCGTGGTGGG 59.237 52.381 10.23 3.74 43.03 4.61
5212 5236 2.168521 ACAGATCTACCATTCGTGGTGG 59.831 50.000 10.23 7.44 43.03 4.61
5213 5237 3.526931 ACAGATCTACCATTCGTGGTG 57.473 47.619 10.23 1.38 43.03 4.17
5214 5238 3.637229 CCTACAGATCTACCATTCGTGGT 59.363 47.826 5.34 5.34 45.46 4.16
5215 5239 3.553096 GCCTACAGATCTACCATTCGTGG 60.553 52.174 0.00 0.00 0.00 4.94
5216 5240 3.319405 AGCCTACAGATCTACCATTCGTG 59.681 47.826 0.00 0.00 0.00 4.35
5217 5241 3.567397 AGCCTACAGATCTACCATTCGT 58.433 45.455 0.00 0.00 0.00 3.85
5218 5242 4.592485 AAGCCTACAGATCTACCATTCG 57.408 45.455 0.00 0.00 0.00 3.34
5219 5243 7.051000 AGAAAAAGCCTACAGATCTACCATTC 58.949 38.462 0.00 0.00 0.00 2.67
5220 5244 6.963322 AGAAAAAGCCTACAGATCTACCATT 58.037 36.000 0.00 0.00 0.00 3.16
5221 5245 6.567602 AGAAAAAGCCTACAGATCTACCAT 57.432 37.500 0.00 0.00 0.00 3.55
5222 5246 6.374417 AAGAAAAAGCCTACAGATCTACCA 57.626 37.500 0.00 0.00 0.00 3.25
5223 5247 8.966069 ATAAAGAAAAAGCCTACAGATCTACC 57.034 34.615 0.00 0.00 0.00 3.18
5227 5251 9.704098 CGTAAATAAAGAAAAAGCCTACAGATC 57.296 33.333 0.00 0.00 0.00 2.75
5228 5252 9.227777 ACGTAAATAAAGAAAAAGCCTACAGAT 57.772 29.630 0.00 0.00 0.00 2.90
5229 5253 8.611654 ACGTAAATAAAGAAAAAGCCTACAGA 57.388 30.769 0.00 0.00 0.00 3.41
5313 5337 8.635328 CCATTTTATTTTAGGGGCTTTATACGT 58.365 33.333 0.00 0.00 0.00 3.57
5314 5338 8.852135 TCCATTTTATTTTAGGGGCTTTATACG 58.148 33.333 0.00 0.00 0.00 3.06
5319 5343 9.821240 ATTTTTCCATTTTATTTTAGGGGCTTT 57.179 25.926 0.00 0.00 0.00 3.51
5332 5356 9.646427 CGAACCATTCCTTATTTTTCCATTTTA 57.354 29.630 0.00 0.00 0.00 1.52
5333 5357 7.606073 CCGAACCATTCCTTATTTTTCCATTTT 59.394 33.333 0.00 0.00 0.00 1.82
5334 5358 7.102993 CCGAACCATTCCTTATTTTTCCATTT 58.897 34.615 0.00 0.00 0.00 2.32
5335 5359 6.212589 ACCGAACCATTCCTTATTTTTCCATT 59.787 34.615 0.00 0.00 0.00 3.16
5336 5360 5.719563 ACCGAACCATTCCTTATTTTTCCAT 59.280 36.000 0.00 0.00 0.00 3.41
5337 5361 5.081032 ACCGAACCATTCCTTATTTTTCCA 58.919 37.500 0.00 0.00 0.00 3.53
5338 5362 5.184287 TGACCGAACCATTCCTTATTTTTCC 59.816 40.000 0.00 0.00 0.00 3.13
5339 5363 6.090783 GTGACCGAACCATTCCTTATTTTTC 58.909 40.000 0.00 0.00 0.00 2.29
5340 5364 5.536916 TGTGACCGAACCATTCCTTATTTTT 59.463 36.000 0.00 0.00 0.00 1.94
5341 5365 5.074115 TGTGACCGAACCATTCCTTATTTT 58.926 37.500 0.00 0.00 0.00 1.82
5342 5366 4.658063 TGTGACCGAACCATTCCTTATTT 58.342 39.130 0.00 0.00 0.00 1.40
5343 5367 4.295141 TGTGACCGAACCATTCCTTATT 57.705 40.909 0.00 0.00 0.00 1.40
5344 5368 3.992943 TGTGACCGAACCATTCCTTAT 57.007 42.857 0.00 0.00 0.00 1.73
5345 5369 3.773418 TTGTGACCGAACCATTCCTTA 57.227 42.857 0.00 0.00 0.00 2.69
5346 5370 2.621526 GTTTGTGACCGAACCATTCCTT 59.378 45.455 0.00 0.00 0.00 3.36
5347 5371 2.158667 AGTTTGTGACCGAACCATTCCT 60.159 45.455 0.00 0.00 35.84 3.36
5348 5372 2.227194 AGTTTGTGACCGAACCATTCC 58.773 47.619 0.00 0.00 35.84 3.01
5349 5373 3.435671 CCTAGTTTGTGACCGAACCATTC 59.564 47.826 0.00 0.00 35.84 2.67
5350 5374 3.071892 TCCTAGTTTGTGACCGAACCATT 59.928 43.478 0.00 0.00 35.84 3.16
5351 5375 2.635915 TCCTAGTTTGTGACCGAACCAT 59.364 45.455 0.00 0.00 35.84 3.55
5352 5376 2.040939 TCCTAGTTTGTGACCGAACCA 58.959 47.619 0.00 0.00 35.84 3.67
5353 5377 2.804527 GTTCCTAGTTTGTGACCGAACC 59.195 50.000 0.00 0.00 35.84 3.62
5354 5378 2.473984 CGTTCCTAGTTTGTGACCGAAC 59.526 50.000 0.00 0.00 35.51 3.95
5355 5379 2.101249 ACGTTCCTAGTTTGTGACCGAA 59.899 45.455 0.00 0.00 0.00 4.30
5356 5380 1.682854 ACGTTCCTAGTTTGTGACCGA 59.317 47.619 0.00 0.00 0.00 4.69
5357 5381 1.790623 CACGTTCCTAGTTTGTGACCG 59.209 52.381 0.00 0.00 32.39 4.79
5358 5382 1.529865 GCACGTTCCTAGTTTGTGACC 59.470 52.381 6.00 0.00 32.39 4.02
5359 5383 1.529865 GGCACGTTCCTAGTTTGTGAC 59.470 52.381 0.00 0.08 32.39 3.67
5360 5384 1.541670 GGGCACGTTCCTAGTTTGTGA 60.542 52.381 3.73 0.00 32.39 3.58
5361 5385 0.872388 GGGCACGTTCCTAGTTTGTG 59.128 55.000 3.73 0.00 0.00 3.33
5362 5386 0.250597 GGGGCACGTTCCTAGTTTGT 60.251 55.000 3.73 0.00 0.00 2.83
5363 5387 0.036306 AGGGGCACGTTCCTAGTTTG 59.964 55.000 3.73 0.00 0.00 2.93
5364 5388 1.277273 GTAGGGGCACGTTCCTAGTTT 59.723 52.381 3.73 0.00 36.42 2.66
5365 5389 0.900421 GTAGGGGCACGTTCCTAGTT 59.100 55.000 3.73 0.00 36.42 2.24
5366 5390 0.040794 AGTAGGGGCACGTTCCTAGT 59.959 55.000 3.73 7.44 36.42 2.57
5367 5391 2.062971 TAGTAGGGGCACGTTCCTAG 57.937 55.000 3.73 0.00 36.42 3.02
5368 5392 2.381911 CTTAGTAGGGGCACGTTCCTA 58.618 52.381 3.73 4.66 34.75 2.94
5369 5393 1.192428 CTTAGTAGGGGCACGTTCCT 58.808 55.000 3.73 5.67 37.18 3.36
5370 5394 0.461516 GCTTAGTAGGGGCACGTTCC 60.462 60.000 0.00 0.00 0.00 3.62
5371 5395 0.535797 AGCTTAGTAGGGGCACGTTC 59.464 55.000 0.00 0.00 0.00 3.95
5372 5396 0.981943 AAGCTTAGTAGGGGCACGTT 59.018 50.000 0.00 0.00 0.00 3.99
5373 5397 0.249398 CAAGCTTAGTAGGGGCACGT 59.751 55.000 0.00 0.00 0.00 4.49
5374 5398 0.462047 CCAAGCTTAGTAGGGGCACG 60.462 60.000 0.00 0.00 0.00 5.34
5375 5399 0.107165 CCCAAGCTTAGTAGGGGCAC 60.107 60.000 11.07 0.00 37.66 5.01
5376 5400 0.549169 ACCCAAGCTTAGTAGGGGCA 60.549 55.000 20.58 0.00 45.83 5.36
5377 5401 0.624254 AACCCAAGCTTAGTAGGGGC 59.376 55.000 20.58 0.00 45.83 5.80
5378 5402 3.264964 TGTTAACCCAAGCTTAGTAGGGG 59.735 47.826 20.58 18.15 45.83 4.79
5379 5403 4.563140 TGTTAACCCAAGCTTAGTAGGG 57.437 45.455 16.23 16.23 46.96 3.53
5380 5404 4.698780 GGTTGTTAACCCAAGCTTAGTAGG 59.301 45.833 0.00 0.14 46.12 3.18
5381 5405 5.874895 GGTTGTTAACCCAAGCTTAGTAG 57.125 43.478 0.00 0.00 46.12 2.57
5394 5418 5.694458 GGTCATTGATTTGGTGGTTGTTAAC 59.306 40.000 0.00 0.00 0.00 2.01
5395 5419 5.363868 TGGTCATTGATTTGGTGGTTGTTAA 59.636 36.000 0.00 0.00 0.00 2.01
5396 5420 4.895889 TGGTCATTGATTTGGTGGTTGTTA 59.104 37.500 0.00 0.00 0.00 2.41
5397 5421 3.708631 TGGTCATTGATTTGGTGGTTGTT 59.291 39.130 0.00 0.00 0.00 2.83
5398 5422 3.303938 TGGTCATTGATTTGGTGGTTGT 58.696 40.909 0.00 0.00 0.00 3.32
5399 5423 4.540359 ATGGTCATTGATTTGGTGGTTG 57.460 40.909 0.00 0.00 0.00 3.77
5400 5424 5.565455 AAATGGTCATTGATTTGGTGGTT 57.435 34.783 0.00 0.00 0.00 3.67
5401 5425 6.213195 ACATAAATGGTCATTGATTTGGTGGT 59.787 34.615 0.00 0.00 0.00 4.16
5402 5426 6.642430 ACATAAATGGTCATTGATTTGGTGG 58.358 36.000 0.00 0.00 0.00 4.61
5403 5427 7.549839 AGACATAAATGGTCATTGATTTGGTG 58.450 34.615 0.00 0.00 37.74 4.17
5404 5428 7.722949 AGACATAAATGGTCATTGATTTGGT 57.277 32.000 0.00 0.00 37.74 3.67
5405 5429 9.123902 TCTAGACATAAATGGTCATTGATTTGG 57.876 33.333 0.00 0.00 37.74 3.28
5409 5433 9.664332 GCTATCTAGACATAAATGGTCATTGAT 57.336 33.333 0.00 0.00 37.74 2.57
5410 5434 8.650490 TGCTATCTAGACATAAATGGTCATTGA 58.350 33.333 0.00 0.00 37.74 2.57
5411 5435 8.715998 GTGCTATCTAGACATAAATGGTCATTG 58.284 37.037 0.00 0.00 37.74 2.82
5412 5436 7.600375 CGTGCTATCTAGACATAAATGGTCATT 59.400 37.037 0.00 0.00 37.74 2.57
5413 5437 7.039714 TCGTGCTATCTAGACATAAATGGTCAT 60.040 37.037 0.00 0.00 37.74 3.06
5414 5438 6.264518 TCGTGCTATCTAGACATAAATGGTCA 59.735 38.462 0.00 0.00 37.74 4.02
5415 5439 6.678878 TCGTGCTATCTAGACATAAATGGTC 58.321 40.000 0.00 0.00 35.50 4.02
5416 5440 6.650427 TCGTGCTATCTAGACATAAATGGT 57.350 37.500 0.00 0.00 0.00 3.55
5417 5441 9.295214 CTATTCGTGCTATCTAGACATAAATGG 57.705 37.037 0.00 0.00 0.00 3.16
5418 5442 9.847706 ACTATTCGTGCTATCTAGACATAAATG 57.152 33.333 0.00 0.00 0.00 2.32
5442 5466 8.500773 CGGCCGTGTTTATATGATATAAAAACT 58.499 33.333 24.82 0.00 32.33 2.66
5443 5467 7.747357 CCGGCCGTGTTTATATGATATAAAAAC 59.253 37.037 26.12 20.76 31.57 2.43
5444 5468 7.660617 TCCGGCCGTGTTTATATGATATAAAAA 59.339 33.333 26.12 10.63 0.00 1.94
5445 5469 7.160049 TCCGGCCGTGTTTATATGATATAAAA 58.840 34.615 26.12 7.23 0.00 1.52
5446 5470 6.699366 TCCGGCCGTGTTTATATGATATAAA 58.301 36.000 26.12 12.35 0.00 1.40
5447 5471 6.283544 TCCGGCCGTGTTTATATGATATAA 57.716 37.500 26.12 0.89 0.00 0.98
5448 5472 5.918426 TCCGGCCGTGTTTATATGATATA 57.082 39.130 26.12 0.00 0.00 0.86
5449 5473 4.811969 TCCGGCCGTGTTTATATGATAT 57.188 40.909 26.12 0.00 0.00 1.63
5450 5474 4.603989 TTCCGGCCGTGTTTATATGATA 57.396 40.909 26.12 0.00 0.00 2.15
5451 5475 3.478857 TTCCGGCCGTGTTTATATGAT 57.521 42.857 26.12 0.00 0.00 2.45
5452 5476 2.983907 TTCCGGCCGTGTTTATATGA 57.016 45.000 26.12 7.70 0.00 2.15
5453 5477 4.035792 TGATTTTCCGGCCGTGTTTATATG 59.964 41.667 26.12 5.01 0.00 1.78
5454 5478 4.200874 TGATTTTCCGGCCGTGTTTATAT 58.799 39.130 26.12 7.68 0.00 0.86
5455 5479 3.607741 TGATTTTCCGGCCGTGTTTATA 58.392 40.909 26.12 2.24 0.00 0.98
5456 5480 2.438411 TGATTTTCCGGCCGTGTTTAT 58.562 42.857 26.12 10.50 0.00 1.40
5457 5481 1.893544 TGATTTTCCGGCCGTGTTTA 58.106 45.000 26.12 5.48 0.00 2.01
5458 5482 1.033574 TTGATTTTCCGGCCGTGTTT 58.966 45.000 26.12 4.28 0.00 2.83
5459 5483 1.033574 TTTGATTTTCCGGCCGTGTT 58.966 45.000 26.12 3.45 0.00 3.32
5460 5484 1.253100 ATTTGATTTTCCGGCCGTGT 58.747 45.000 26.12 4.39 0.00 4.49
5461 5485 2.362169 AATTTGATTTTCCGGCCGTG 57.638 45.000 26.12 15.93 0.00 4.94
5462 5486 2.682836 CAAATTTGATTTTCCGGCCGT 58.317 42.857 26.12 4.16 0.00 5.68
5463 5487 1.393196 GCAAATTTGATTTTCCGGCCG 59.607 47.619 21.04 21.04 0.00 6.13
5464 5488 2.421619 TGCAAATTTGATTTTCCGGCC 58.578 42.857 22.31 0.00 0.00 6.13
5465 5489 3.745458 TCTTGCAAATTTGATTTTCCGGC 59.255 39.130 22.31 3.46 0.00 6.13
5466 5490 5.921004 TTCTTGCAAATTTGATTTTCCGG 57.079 34.783 22.31 0.00 0.00 5.14
5467 5491 7.354257 ACATTTCTTGCAAATTTGATTTTCCG 58.646 30.769 22.31 5.75 0.00 4.30
5472 5496 8.949177 GGGATTACATTTCTTGCAAATTTGATT 58.051 29.630 22.31 0.00 0.00 2.57
5473 5497 8.102047 TGGGATTACATTTCTTGCAAATTTGAT 58.898 29.630 22.31 2.21 0.00 2.57
5474 5498 7.448420 TGGGATTACATTTCTTGCAAATTTGA 58.552 30.769 22.31 4.41 0.00 2.69
5475 5499 7.670009 TGGGATTACATTTCTTGCAAATTTG 57.330 32.000 14.03 14.03 0.00 2.32
5476 5500 8.688747 TTTGGGATTACATTTCTTGCAAATTT 57.311 26.923 0.00 0.00 0.00 1.82
5477 5501 8.688747 TTTTGGGATTACATTTCTTGCAAATT 57.311 26.923 0.00 0.00 0.00 1.82
5478 5502 8.688747 TTTTTGGGATTACATTTCTTGCAAAT 57.311 26.923 0.00 0.00 0.00 2.32
5479 5503 7.989741 TCTTTTTGGGATTACATTTCTTGCAAA 59.010 29.630 0.00 0.00 0.00 3.68
5480 5504 7.504403 TCTTTTTGGGATTACATTTCTTGCAA 58.496 30.769 0.00 0.00 0.00 4.08
5481 5505 7.060383 TCTTTTTGGGATTACATTTCTTGCA 57.940 32.000 0.00 0.00 0.00 4.08
5482 5506 6.591448 CCTCTTTTTGGGATTACATTTCTTGC 59.409 38.462 0.00 0.00 0.00 4.01
5483 5507 7.895759 TCCTCTTTTTGGGATTACATTTCTTG 58.104 34.615 0.00 0.00 0.00 3.02
5484 5508 7.310052 GCTCCTCTTTTTGGGATTACATTTCTT 60.310 37.037 0.00 0.00 0.00 2.52
5485 5509 6.153510 GCTCCTCTTTTTGGGATTACATTTCT 59.846 38.462 0.00 0.00 0.00 2.52
5486 5510 6.071391 TGCTCCTCTTTTTGGGATTACATTTC 60.071 38.462 0.00 0.00 0.00 2.17
5487 5511 5.779771 TGCTCCTCTTTTTGGGATTACATTT 59.220 36.000 0.00 0.00 0.00 2.32
5488 5512 5.185828 GTGCTCCTCTTTTTGGGATTACATT 59.814 40.000 0.00 0.00 0.00 2.71
5489 5513 4.706962 GTGCTCCTCTTTTTGGGATTACAT 59.293 41.667 0.00 0.00 0.00 2.29
5490 5514 4.079253 GTGCTCCTCTTTTTGGGATTACA 58.921 43.478 0.00 0.00 0.00 2.41
5491 5515 4.703645 GTGCTCCTCTTTTTGGGATTAC 57.296 45.455 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.