Multiple sequence alignment - TraesCS3A01G199000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G199000 chr3A 100.000 4827 0 0 1 4827 322877810 322882636 0.000000e+00 8914.0
1 TraesCS3A01G199000 chr3A 96.992 266 8 0 1 266 260128439 260128174 9.530000e-122 448.0
2 TraesCS3A01G199000 chr3A 95.941 271 10 1 1 271 298600055 298599786 5.740000e-119 438.0
3 TraesCS3A01G199000 chr3B 97.069 3036 52 11 898 3920 353471728 353468717 0.000000e+00 5079.0
4 TraesCS3A01G199000 chr3B 88.155 439 38 7 269 696 353472488 353472053 1.200000e-140 510.0
5 TraesCS3A01G199000 chr3D 97.808 2783 49 3 775 3557 264140789 264143559 0.000000e+00 4791.0
6 TraesCS3A01G199000 chr3D 93.123 887 51 5 3951 4827 16260831 16259945 0.000000e+00 1291.0
7 TraesCS3A01G199000 chr3D 92.395 881 61 2 3953 4827 302300145 302299265 0.000000e+00 1251.0
8 TraesCS3A01G199000 chr3D 94.673 413 13 4 3559 3962 264143644 264144056 2.450000e-177 632.0
9 TraesCS3A01G199000 chr3D 96.970 264 8 0 3 266 262910620 262910357 1.230000e-120 444.0
10 TraesCS3A01G199000 chr3D 79.888 179 22 6 661 834 189451885 189452054 8.490000e-23 119.0
11 TraesCS3A01G199000 chr5D 92.395 881 63 3 3951 4827 212482273 212483153 0.000000e+00 1253.0
12 TraesCS3A01G199000 chr5D 92.090 885 60 5 3951 4827 476614111 476614993 0.000000e+00 1238.0
13 TraesCS3A01G199000 chr5D 81.973 588 77 16 273 836 404866754 404866172 5.650000e-129 472.0
14 TraesCS3A01G199000 chr6D 92.334 887 56 7 3951 4827 407227549 407228433 0.000000e+00 1251.0
15 TraesCS3A01G199000 chr6D 80.763 603 67 28 269 836 9145807 9145219 4.470000e-115 425.0
16 TraesCS3A01G199000 chr2D 92.299 883 60 4 3951 4827 556947731 556946851 0.000000e+00 1247.0
17 TraesCS3A01G199000 chr2D 91.874 886 65 4 3948 4827 441534960 441534076 0.000000e+00 1230.0
18 TraesCS3A01G199000 chr2D 82.696 601 67 23 269 837 586962894 586963489 2.590000e-137 499.0
19 TraesCS3A01G199000 chr2D 82.729 579 68 21 269 834 286674145 286674704 2.020000e-133 486.0
20 TraesCS3A01G199000 chr7D 91.853 896 62 6 3940 4825 501382499 501381605 0.000000e+00 1240.0
21 TraesCS3A01G199000 chr1D 91.798 890 65 4 3944 4825 375967140 375968029 0.000000e+00 1232.0
22 TraesCS3A01G199000 chr5B 85.983 585 65 12 269 836 538392244 538391660 1.150000e-170 610.0
23 TraesCS3A01G199000 chr5A 84.720 589 67 9 269 836 565668238 565667652 7.010000e-158 568.0
24 TraesCS3A01G199000 chr5A 96.992 266 8 0 1 266 228932457 228932192 9.530000e-122 448.0
25 TraesCS3A01G199000 chr5A 96.992 266 8 0 1 266 375440117 375439852 9.530000e-122 448.0
26 TraesCS3A01G199000 chr6B 82.631 593 66 24 278 839 277157096 277156510 1.560000e-134 490.0
27 TraesCS3A01G199000 chr2B 82.482 548 61 18 307 834 783707210 783706678 9.530000e-122 448.0
28 TraesCS3A01G199000 chr2A 81.615 582 69 26 269 837 329690231 329689675 9.530000e-122 448.0
29 TraesCS3A01G199000 chrUn 96.642 268 9 0 1 268 320335056 320335323 3.430000e-121 446.0
30 TraesCS3A01G199000 chrUn 96.642 268 9 0 1 268 320402229 320402496 3.430000e-121 446.0
31 TraesCS3A01G199000 chrUn 96.642 268 9 0 1 268 371457388 371457655 3.430000e-121 446.0
32 TraesCS3A01G199000 chr1A 96.629 267 9 0 1 267 199789206 199788940 1.230000e-120 444.0
33 TraesCS3A01G199000 chr7B 97.222 36 0 1 3882 3916 463541784 463541749 5.220000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G199000 chr3A 322877810 322882636 4826 False 8914.0 8914 100.0000 1 4827 1 chr3A.!!$F1 4826
1 TraesCS3A01G199000 chr3B 353468717 353472488 3771 True 2794.5 5079 92.6120 269 3920 2 chr3B.!!$R1 3651
2 TraesCS3A01G199000 chr3D 264140789 264144056 3267 False 2711.5 4791 96.2405 775 3962 2 chr3D.!!$F2 3187
3 TraesCS3A01G199000 chr3D 16259945 16260831 886 True 1291.0 1291 93.1230 3951 4827 1 chr3D.!!$R1 876
4 TraesCS3A01G199000 chr3D 302299265 302300145 880 True 1251.0 1251 92.3950 3953 4827 1 chr3D.!!$R3 874
5 TraesCS3A01G199000 chr5D 212482273 212483153 880 False 1253.0 1253 92.3950 3951 4827 1 chr5D.!!$F1 876
6 TraesCS3A01G199000 chr5D 476614111 476614993 882 False 1238.0 1238 92.0900 3951 4827 1 chr5D.!!$F2 876
7 TraesCS3A01G199000 chr5D 404866172 404866754 582 True 472.0 472 81.9730 273 836 1 chr5D.!!$R1 563
8 TraesCS3A01G199000 chr6D 407227549 407228433 884 False 1251.0 1251 92.3340 3951 4827 1 chr6D.!!$F1 876
9 TraesCS3A01G199000 chr6D 9145219 9145807 588 True 425.0 425 80.7630 269 836 1 chr6D.!!$R1 567
10 TraesCS3A01G199000 chr2D 556946851 556947731 880 True 1247.0 1247 92.2990 3951 4827 1 chr2D.!!$R2 876
11 TraesCS3A01G199000 chr2D 441534076 441534960 884 True 1230.0 1230 91.8740 3948 4827 1 chr2D.!!$R1 879
12 TraesCS3A01G199000 chr2D 586962894 586963489 595 False 499.0 499 82.6960 269 837 1 chr2D.!!$F2 568
13 TraesCS3A01G199000 chr2D 286674145 286674704 559 False 486.0 486 82.7290 269 834 1 chr2D.!!$F1 565
14 TraesCS3A01G199000 chr7D 501381605 501382499 894 True 1240.0 1240 91.8530 3940 4825 1 chr7D.!!$R1 885
15 TraesCS3A01G199000 chr1D 375967140 375968029 889 False 1232.0 1232 91.7980 3944 4825 1 chr1D.!!$F1 881
16 TraesCS3A01G199000 chr5B 538391660 538392244 584 True 610.0 610 85.9830 269 836 1 chr5B.!!$R1 567
17 TraesCS3A01G199000 chr5A 565667652 565668238 586 True 568.0 568 84.7200 269 836 1 chr5A.!!$R3 567
18 TraesCS3A01G199000 chr6B 277156510 277157096 586 True 490.0 490 82.6310 278 839 1 chr6B.!!$R1 561
19 TraesCS3A01G199000 chr2B 783706678 783707210 532 True 448.0 448 82.4820 307 834 1 chr2B.!!$R1 527
20 TraesCS3A01G199000 chr2A 329689675 329690231 556 True 448.0 448 81.6150 269 837 1 chr2A.!!$R1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.110644 CGTTCTTGTTCCTCTTGCGC 60.111 55.0 0.00 0.00 0.00 6.09 F
193 194 0.169230 AATTTAATTGGCGTGCGCGA 59.831 45.0 26.19 2.13 43.06 5.87 F
1917 2183 0.109689 CTGGTGACCTCGACGACTTC 60.110 60.0 2.11 0.00 0.00 3.01 F
2934 3200 0.321564 TGCTGCGGCTATTGTGTTCT 60.322 50.0 20.27 0.00 39.59 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1039 1305 1.272704 GCAGGACAGGGGAAAAGGAAT 60.273 52.381 0.00 0.00 0.00 3.01 R
2028 2294 5.014858 TCCAGGTAGTACTTCTTGAATCGT 58.985 41.667 12.37 0.00 0.00 3.73 R
3234 3500 0.248843 GAGAGTCCAGGAACAGGCTG 59.751 60.000 14.16 14.16 33.77 4.85 R
4057 4427 0.108992 TGGATCGAAAACGGACGGAG 60.109 55.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.110644 CGTTCTTGTTCCTCTTGCGC 60.111 55.000 0.00 0.00 0.00 6.09
20 21 0.944386 GTTCTTGTTCCTCTTGCGCA 59.056 50.000 5.66 5.66 0.00 6.09
21 22 0.944386 TTCTTGTTCCTCTTGCGCAC 59.056 50.000 11.12 0.00 0.00 5.34
22 23 1.205064 CTTGTTCCTCTTGCGCACG 59.795 57.895 11.12 9.20 0.00 5.34
23 24 2.770587 CTTGTTCCTCTTGCGCACGC 62.771 60.000 11.12 8.33 42.35 5.34
24 25 4.090057 GTTCCTCTTGCGCACGCC 62.090 66.667 11.12 0.00 41.09 5.68
25 26 4.617520 TTCCTCTTGCGCACGCCA 62.618 61.111 11.12 0.00 41.09 5.69
26 27 3.899981 TTCCTCTTGCGCACGCCAT 62.900 57.895 11.12 0.00 41.09 4.40
27 28 3.869272 CCTCTTGCGCACGCCATC 61.869 66.667 11.12 0.00 41.09 3.51
28 29 3.120385 CTCTTGCGCACGCCATCA 61.120 61.111 11.12 0.00 41.09 3.07
29 30 2.436469 TCTTGCGCACGCCATCAT 60.436 55.556 11.12 0.00 41.09 2.45
30 31 2.023741 CTTGCGCACGCCATCATC 59.976 61.111 11.12 0.00 41.09 2.92
31 32 2.436469 TTGCGCACGCCATCATCT 60.436 55.556 11.12 0.00 41.09 2.90
32 33 2.370824 CTTGCGCACGCCATCATCTC 62.371 60.000 11.12 0.00 41.09 2.75
33 34 3.643978 GCGCACGCCATCATCTCC 61.644 66.667 0.30 0.00 34.56 3.71
34 35 2.202919 CGCACGCCATCATCTCCA 60.203 61.111 0.00 0.00 0.00 3.86
35 36 1.596203 CGCACGCCATCATCTCCAT 60.596 57.895 0.00 0.00 0.00 3.41
36 37 1.838568 CGCACGCCATCATCTCCATG 61.839 60.000 0.00 0.00 0.00 3.66
37 38 1.947013 CACGCCATCATCTCCATGC 59.053 57.895 0.00 0.00 0.00 4.06
38 39 0.534427 CACGCCATCATCTCCATGCT 60.534 55.000 0.00 0.00 0.00 3.79
39 40 0.182061 ACGCCATCATCTCCATGCTT 59.818 50.000 0.00 0.00 0.00 3.91
40 41 0.591659 CGCCATCATCTCCATGCTTG 59.408 55.000 0.00 0.00 0.00 4.01
41 42 1.812708 CGCCATCATCTCCATGCTTGA 60.813 52.381 0.22 0.00 0.00 3.02
42 43 2.304092 GCCATCATCTCCATGCTTGAA 58.696 47.619 0.22 0.00 0.00 2.69
43 44 2.034305 GCCATCATCTCCATGCTTGAAC 59.966 50.000 0.22 0.00 0.00 3.18
44 45 3.552875 CCATCATCTCCATGCTTGAACT 58.447 45.455 0.22 0.00 0.00 3.01
45 46 3.952323 CCATCATCTCCATGCTTGAACTT 59.048 43.478 0.22 0.00 0.00 2.66
46 47 4.202020 CCATCATCTCCATGCTTGAACTTG 60.202 45.833 0.22 0.00 0.00 3.16
47 48 2.751259 TCATCTCCATGCTTGAACTTGC 59.249 45.455 0.22 0.00 0.00 4.01
48 49 2.574006 TCTCCATGCTTGAACTTGCT 57.426 45.000 0.22 0.00 0.00 3.91
49 50 2.430465 TCTCCATGCTTGAACTTGCTC 58.570 47.619 0.22 0.00 0.00 4.26
50 51 1.471684 CTCCATGCTTGAACTTGCTCC 59.528 52.381 0.22 0.00 0.00 4.70
51 52 1.202915 TCCATGCTTGAACTTGCTCCA 60.203 47.619 0.22 0.00 0.00 3.86
52 53 1.614903 CCATGCTTGAACTTGCTCCAA 59.385 47.619 0.22 0.00 0.00 3.53
53 54 2.352421 CCATGCTTGAACTTGCTCCAAG 60.352 50.000 0.22 3.57 45.85 3.61
54 55 1.321474 TGCTTGAACTTGCTCCAAGG 58.679 50.000 9.50 0.00 44.81 3.61
55 56 1.322442 GCTTGAACTTGCTCCAAGGT 58.678 50.000 9.50 2.58 44.76 3.50
56 57 1.683385 GCTTGAACTTGCTCCAAGGTT 59.317 47.619 9.50 2.29 41.88 3.50
57 58 2.287849 GCTTGAACTTGCTCCAAGGTTC 60.288 50.000 9.50 10.12 41.88 3.62
58 59 2.727123 TGAACTTGCTCCAAGGTTCA 57.273 45.000 9.50 12.01 41.88 3.18
59 60 3.228188 TGAACTTGCTCCAAGGTTCAT 57.772 42.857 9.50 0.00 41.88 2.57
60 61 3.149196 TGAACTTGCTCCAAGGTTCATC 58.851 45.455 9.50 1.66 41.88 2.92
61 62 3.181440 TGAACTTGCTCCAAGGTTCATCT 60.181 43.478 9.50 0.00 41.88 2.90
62 63 3.515602 ACTTGCTCCAAGGTTCATCTT 57.484 42.857 9.50 0.00 44.81 2.40
63 64 3.837355 ACTTGCTCCAAGGTTCATCTTT 58.163 40.909 9.50 0.00 44.81 2.52
64 65 3.823304 ACTTGCTCCAAGGTTCATCTTTC 59.177 43.478 9.50 0.00 44.81 2.62
65 66 3.795688 TGCTCCAAGGTTCATCTTTCT 57.204 42.857 0.00 0.00 0.00 2.52
66 67 4.104383 TGCTCCAAGGTTCATCTTTCTT 57.896 40.909 0.00 0.00 0.00 2.52
67 68 3.822735 TGCTCCAAGGTTCATCTTTCTTG 59.177 43.478 0.00 0.00 37.09 3.02
68 69 3.823304 GCTCCAAGGTTCATCTTTCTTGT 59.177 43.478 0.00 0.00 35.98 3.16
69 70 4.083057 GCTCCAAGGTTCATCTTTCTTGTC 60.083 45.833 0.00 0.00 35.98 3.18
70 71 4.398319 TCCAAGGTTCATCTTTCTTGTCC 58.602 43.478 0.00 0.00 35.98 4.02
71 72 4.141274 TCCAAGGTTCATCTTTCTTGTCCA 60.141 41.667 0.00 0.00 35.98 4.02
72 73 4.584325 CCAAGGTTCATCTTTCTTGTCCAA 59.416 41.667 0.00 0.00 35.98 3.53
73 74 5.278660 CCAAGGTTCATCTTTCTTGTCCAAG 60.279 44.000 0.47 0.47 39.71 3.61
74 75 3.823304 AGGTTCATCTTTCTTGTCCAAGC 59.177 43.478 2.09 0.00 38.28 4.01
75 76 3.823304 GGTTCATCTTTCTTGTCCAAGCT 59.177 43.478 2.09 0.00 38.28 3.74
76 77 5.003804 GGTTCATCTTTCTTGTCCAAGCTA 58.996 41.667 2.09 0.00 38.28 3.32
77 78 5.123027 GGTTCATCTTTCTTGTCCAAGCTAG 59.877 44.000 2.09 2.83 38.28 3.42
78 79 4.836825 TCATCTTTCTTGTCCAAGCTAGG 58.163 43.478 2.09 0.00 38.28 3.02
79 80 3.059352 TCTTTCTTGTCCAAGCTAGGC 57.941 47.619 2.09 0.00 38.28 3.93
80 81 2.087646 CTTTCTTGTCCAAGCTAGGCC 58.912 52.381 0.00 0.00 38.28 5.19
81 82 0.328258 TTCTTGTCCAAGCTAGGCCC 59.672 55.000 0.00 0.00 38.28 5.80
82 83 0.547712 TCTTGTCCAAGCTAGGCCCT 60.548 55.000 0.00 0.00 38.28 5.19
83 84 0.329596 CTTGTCCAAGCTAGGCCCTT 59.670 55.000 0.00 0.00 0.00 3.95
84 85 0.328258 TTGTCCAAGCTAGGCCCTTC 59.672 55.000 0.00 0.00 0.00 3.46
85 86 0.840288 TGTCCAAGCTAGGCCCTTCA 60.840 55.000 0.00 0.00 0.00 3.02
86 87 0.548510 GTCCAAGCTAGGCCCTTCAT 59.451 55.000 0.00 0.00 0.00 2.57
87 88 1.064389 GTCCAAGCTAGGCCCTTCATT 60.064 52.381 0.00 0.00 0.00 2.57
88 89 1.640670 TCCAAGCTAGGCCCTTCATTT 59.359 47.619 0.00 0.00 0.00 2.32
89 90 1.753073 CCAAGCTAGGCCCTTCATTTG 59.247 52.381 0.00 0.00 0.00 2.32
90 91 2.450476 CAAGCTAGGCCCTTCATTTGT 58.550 47.619 0.00 0.00 0.00 2.83
91 92 3.620488 CAAGCTAGGCCCTTCATTTGTA 58.380 45.455 0.00 0.00 0.00 2.41
92 93 4.016444 CAAGCTAGGCCCTTCATTTGTAA 58.984 43.478 0.00 0.00 0.00 2.41
93 94 3.891049 AGCTAGGCCCTTCATTTGTAAG 58.109 45.455 0.00 0.00 0.00 2.34
94 95 2.359214 GCTAGGCCCTTCATTTGTAAGC 59.641 50.000 0.00 0.00 0.00 3.09
95 96 2.603075 AGGCCCTTCATTTGTAAGCA 57.397 45.000 0.00 0.00 0.00 3.91
96 97 2.888212 AGGCCCTTCATTTGTAAGCAA 58.112 42.857 0.00 0.00 0.00 3.91
98 99 3.645687 AGGCCCTTCATTTGTAAGCAAAA 59.354 39.130 0.00 0.00 46.23 2.44
99 100 3.745975 GGCCCTTCATTTGTAAGCAAAAC 59.254 43.478 0.00 0.00 46.23 2.43
100 101 4.376146 GCCCTTCATTTGTAAGCAAAACA 58.624 39.130 0.00 0.00 46.23 2.83
101 102 4.813697 GCCCTTCATTTGTAAGCAAAACAA 59.186 37.500 0.00 0.00 46.23 2.83
111 112 8.948631 TTTGTAAGCAAAACAAATGTATCCAA 57.051 26.923 7.05 0.00 40.83 3.53
112 113 9.553064 TTTGTAAGCAAAACAAATGTATCCAAT 57.447 25.926 7.05 0.00 40.83 3.16
113 114 9.553064 TTGTAAGCAAAACAAATGTATCCAATT 57.447 25.926 0.00 0.00 34.04 2.32
114 115 9.553064 TGTAAGCAAAACAAATGTATCCAATTT 57.447 25.926 0.00 0.00 0.00 1.82
117 118 8.776376 AGCAAAACAAATGTATCCAATTTAGG 57.224 30.769 0.00 0.00 0.00 2.69
118 119 7.334171 AGCAAAACAAATGTATCCAATTTAGGC 59.666 33.333 0.00 0.00 0.00 3.93
119 120 7.118971 GCAAAACAAATGTATCCAATTTAGGCA 59.881 33.333 0.00 0.00 0.00 4.75
120 121 8.658609 CAAAACAAATGTATCCAATTTAGGCAG 58.341 33.333 0.00 0.00 0.00 4.85
121 122 5.906073 ACAAATGTATCCAATTTAGGCAGC 58.094 37.500 0.00 0.00 0.00 5.25
122 123 5.421693 ACAAATGTATCCAATTTAGGCAGCA 59.578 36.000 0.00 0.00 0.00 4.41
123 124 6.098695 ACAAATGTATCCAATTTAGGCAGCAT 59.901 34.615 0.00 0.00 0.00 3.79
124 125 5.972107 ATGTATCCAATTTAGGCAGCATC 57.028 39.130 0.00 0.00 0.00 3.91
125 126 4.790937 TGTATCCAATTTAGGCAGCATCA 58.209 39.130 0.00 0.00 0.00 3.07
126 127 5.387788 TGTATCCAATTTAGGCAGCATCAT 58.612 37.500 0.00 0.00 0.00 2.45
127 128 6.541907 TGTATCCAATTTAGGCAGCATCATA 58.458 36.000 0.00 0.00 0.00 2.15
128 129 7.177184 TGTATCCAATTTAGGCAGCATCATAT 58.823 34.615 0.00 0.00 0.00 1.78
129 130 7.670979 TGTATCCAATTTAGGCAGCATCATATT 59.329 33.333 0.00 0.00 0.00 1.28
130 131 6.579666 TCCAATTTAGGCAGCATCATATTC 57.420 37.500 0.00 0.00 0.00 1.75
131 132 6.309357 TCCAATTTAGGCAGCATCATATTCT 58.691 36.000 0.00 0.00 0.00 2.40
132 133 6.432162 TCCAATTTAGGCAGCATCATATTCTC 59.568 38.462 0.00 0.00 0.00 2.87
133 134 6.208007 CCAATTTAGGCAGCATCATATTCTCA 59.792 38.462 0.00 0.00 0.00 3.27
134 135 7.093902 CCAATTTAGGCAGCATCATATTCTCAT 60.094 37.037 0.00 0.00 0.00 2.90
135 136 6.812879 TTTAGGCAGCATCATATTCTCATG 57.187 37.500 0.00 0.00 0.00 3.07
136 137 4.635699 AGGCAGCATCATATTCTCATGA 57.364 40.909 0.00 0.00 39.20 3.07
137 138 4.981812 AGGCAGCATCATATTCTCATGAA 58.018 39.130 0.00 0.00 38.39 2.57
138 139 4.760715 AGGCAGCATCATATTCTCATGAAC 59.239 41.667 0.00 0.00 38.39 3.18
139 140 4.517832 GGCAGCATCATATTCTCATGAACA 59.482 41.667 0.00 0.00 38.39 3.18
140 141 5.183331 GGCAGCATCATATTCTCATGAACAT 59.817 40.000 0.00 0.00 38.39 2.71
141 142 6.294564 GGCAGCATCATATTCTCATGAACATT 60.295 38.462 0.00 0.00 38.39 2.71
142 143 7.094506 GGCAGCATCATATTCTCATGAACATTA 60.095 37.037 0.00 0.00 38.39 1.90
143 144 7.963465 GCAGCATCATATTCTCATGAACATTAG 59.037 37.037 0.00 0.00 38.39 1.73
144 145 9.216117 CAGCATCATATTCTCATGAACATTAGA 57.784 33.333 0.00 0.00 38.39 2.10
145 146 9.788889 AGCATCATATTCTCATGAACATTAGAA 57.211 29.630 11.93 11.93 38.39 2.10
149 150 9.987272 TCATATTCTCATGAACATTAGAATCGT 57.013 29.630 20.31 12.16 39.59 3.73
154 155 8.996024 TCTCATGAACATTAGAATCGTTAACA 57.004 30.769 6.39 0.00 0.00 2.41
155 156 9.430623 TCTCATGAACATTAGAATCGTTAACAA 57.569 29.630 6.39 0.00 0.00 2.83
156 157 9.694520 CTCATGAACATTAGAATCGTTAACAAG 57.305 33.333 6.39 0.00 0.00 3.16
157 158 9.430623 TCATGAACATTAGAATCGTTAACAAGA 57.569 29.630 6.39 0.00 0.00 3.02
169 170 9.326339 GAATCGTTAACAAGAAATGAAAGTACC 57.674 33.333 6.39 0.00 0.00 3.34
170 171 8.617290 ATCGTTAACAAGAAATGAAAGTACCT 57.383 30.769 6.39 0.00 0.00 3.08
171 172 7.857569 TCGTTAACAAGAAATGAAAGTACCTG 58.142 34.615 6.39 0.00 0.00 4.00
172 173 7.041644 TCGTTAACAAGAAATGAAAGTACCTGG 60.042 37.037 6.39 0.00 0.00 4.45
173 174 7.255001 CGTTAACAAGAAATGAAAGTACCTGGT 60.255 37.037 4.05 4.05 0.00 4.00
174 175 9.059260 GTTAACAAGAAATGAAAGTACCTGGTA 57.941 33.333 1.49 1.49 0.00 3.25
175 176 9.629878 TTAACAAGAAATGAAAGTACCTGGTAA 57.370 29.630 8.40 0.00 0.00 2.85
176 177 8.706322 AACAAGAAATGAAAGTACCTGGTAAT 57.294 30.769 8.40 4.20 0.00 1.89
177 178 8.706322 ACAAGAAATGAAAGTACCTGGTAATT 57.294 30.769 13.39 13.39 0.00 1.40
178 179 9.143155 ACAAGAAATGAAAGTACCTGGTAATTT 57.857 29.630 26.80 26.80 38.66 1.82
185 186 7.832769 TGAAAGTACCTGGTAATTTAATTGGC 58.167 34.615 26.60 16.08 36.63 4.52
186 187 6.445357 AAGTACCTGGTAATTTAATTGGCG 57.555 37.500 13.39 0.00 0.00 5.69
187 188 5.503002 AGTACCTGGTAATTTAATTGGCGT 58.497 37.500 8.40 0.00 0.00 5.68
188 189 4.712122 ACCTGGTAATTTAATTGGCGTG 57.288 40.909 0.00 0.00 0.00 5.34
189 190 3.119280 ACCTGGTAATTTAATTGGCGTGC 60.119 43.478 0.00 0.00 0.00 5.34
190 191 3.105203 CTGGTAATTTAATTGGCGTGCG 58.895 45.455 0.00 0.00 0.00 5.34
191 192 1.849829 GGTAATTTAATTGGCGTGCGC 59.150 47.619 8.17 8.17 41.06 6.09
192 193 1.511147 GTAATTTAATTGGCGTGCGCG 59.489 47.619 16.86 16.86 43.06 6.86
193 194 0.169230 AATTTAATTGGCGTGCGCGA 59.831 45.000 26.19 2.13 43.06 5.87
194 195 0.248054 ATTTAATTGGCGTGCGCGAG 60.248 50.000 26.19 0.19 43.06 5.03
210 211 2.731976 CGCGAGCTCTATTAATTGGTCC 59.268 50.000 12.85 0.00 0.00 4.46
211 212 3.728845 GCGAGCTCTATTAATTGGTCCA 58.271 45.455 12.85 0.00 0.00 4.02
212 213 3.743396 GCGAGCTCTATTAATTGGTCCAG 59.257 47.826 12.85 0.00 0.00 3.86
213 214 4.740934 GCGAGCTCTATTAATTGGTCCAGT 60.741 45.833 12.85 0.00 0.00 4.00
214 215 5.509163 GCGAGCTCTATTAATTGGTCCAGTA 60.509 44.000 12.85 0.00 0.00 2.74
215 216 6.692486 CGAGCTCTATTAATTGGTCCAGTAT 58.308 40.000 12.85 0.00 0.00 2.12
216 217 6.587990 CGAGCTCTATTAATTGGTCCAGTATG 59.412 42.308 12.85 0.00 0.00 2.39
217 218 7.380423 AGCTCTATTAATTGGTCCAGTATGT 57.620 36.000 0.00 0.00 0.00 2.29
218 219 8.492415 AGCTCTATTAATTGGTCCAGTATGTA 57.508 34.615 0.00 0.00 0.00 2.29
219 220 9.105844 AGCTCTATTAATTGGTCCAGTATGTAT 57.894 33.333 0.00 0.00 0.00 2.29
225 226 4.336889 TTGGTCCAGTATGTATAGCAGC 57.663 45.455 0.00 0.00 0.00 5.25
226 227 3.304829 TGGTCCAGTATGTATAGCAGCA 58.695 45.455 0.00 0.00 0.00 4.41
227 228 3.321968 TGGTCCAGTATGTATAGCAGCAG 59.678 47.826 0.00 0.00 0.00 4.24
228 229 3.306364 GGTCCAGTATGTATAGCAGCAGG 60.306 52.174 0.00 0.00 0.00 4.85
229 230 2.899900 TCCAGTATGTATAGCAGCAGGG 59.100 50.000 0.00 0.00 0.00 4.45
230 231 2.027745 CCAGTATGTATAGCAGCAGGGG 60.028 54.545 0.00 0.00 0.00 4.79
231 232 1.625818 AGTATGTATAGCAGCAGGGGC 59.374 52.381 0.00 0.00 41.61 5.80
241 242 3.655358 GCAGGGGCTATGGGTGTA 58.345 61.111 0.00 0.00 36.96 2.90
242 243 1.919771 GCAGGGGCTATGGGTGTAA 59.080 57.895 0.00 0.00 36.96 2.41
243 244 0.465642 GCAGGGGCTATGGGTGTAAC 60.466 60.000 0.00 0.00 36.96 2.50
244 245 0.916086 CAGGGGCTATGGGTGTAACA 59.084 55.000 0.00 0.00 39.98 2.41
245 246 1.283613 CAGGGGCTATGGGTGTAACAA 59.716 52.381 0.00 0.00 39.98 2.83
246 247 2.091885 CAGGGGCTATGGGTGTAACAAT 60.092 50.000 0.00 0.00 39.98 2.71
247 248 2.091885 AGGGGCTATGGGTGTAACAATG 60.092 50.000 0.00 0.00 39.98 2.82
248 249 2.306847 GGGCTATGGGTGTAACAATGG 58.693 52.381 0.00 0.00 39.98 3.16
249 250 2.357777 GGGCTATGGGTGTAACAATGGT 60.358 50.000 0.00 0.00 39.98 3.55
250 251 3.117813 GGGCTATGGGTGTAACAATGGTA 60.118 47.826 0.00 0.00 39.98 3.25
251 252 4.447180 GGGCTATGGGTGTAACAATGGTAT 60.447 45.833 0.00 0.00 39.98 2.73
252 253 5.137551 GGCTATGGGTGTAACAATGGTATT 58.862 41.667 0.00 0.00 39.98 1.89
253 254 5.009610 GGCTATGGGTGTAACAATGGTATTG 59.990 44.000 0.28 0.28 39.98 1.90
254 255 5.825679 GCTATGGGTGTAACAATGGTATTGA 59.174 40.000 8.41 0.00 39.98 2.57
255 256 6.490040 GCTATGGGTGTAACAATGGTATTGAT 59.510 38.462 8.41 0.00 39.98 2.57
256 257 6.713762 ATGGGTGTAACAATGGTATTGATG 57.286 37.500 8.41 0.00 39.98 3.07
257 258 5.575157 TGGGTGTAACAATGGTATTGATGT 58.425 37.500 8.41 0.00 39.98 3.06
258 259 5.650266 TGGGTGTAACAATGGTATTGATGTC 59.350 40.000 8.41 0.00 39.98 3.06
259 260 5.067283 GGGTGTAACAATGGTATTGATGTCC 59.933 44.000 8.41 4.55 39.98 4.02
260 261 5.885912 GGTGTAACAATGGTATTGATGTCCT 59.114 40.000 8.41 0.00 39.98 3.85
261 262 6.377146 GGTGTAACAATGGTATTGATGTCCTT 59.623 38.462 8.41 0.00 39.98 3.36
262 263 7.554835 GGTGTAACAATGGTATTGATGTCCTTA 59.445 37.037 8.41 0.00 39.98 2.69
263 264 9.120538 GTGTAACAATGGTATTGATGTCCTTAT 57.879 33.333 8.41 0.00 36.32 1.73
264 265 9.337396 TGTAACAATGGTATTGATGTCCTTATC 57.663 33.333 8.41 0.00 0.00 1.75
265 266 9.337396 GTAACAATGGTATTGATGTCCTTATCA 57.663 33.333 8.41 0.00 35.38 2.15
266 267 8.455903 AACAATGGTATTGATGTCCTTATCAG 57.544 34.615 8.41 0.00 38.25 2.90
267 268 7.805163 ACAATGGTATTGATGTCCTTATCAGA 58.195 34.615 8.41 0.00 38.25 3.27
309 313 1.043116 TGGAGGAGATGCCGACGAAT 61.043 55.000 0.00 0.00 43.43 3.34
340 344 4.353437 GACCGGCGGTTGTCGTCT 62.353 66.667 34.58 7.16 43.03 4.18
345 349 1.289380 GGCGGTTGTCGTCTCTTCT 59.711 57.895 0.00 0.00 40.86 2.85
380 384 3.508840 GGCGATGGCTCGGTTTGG 61.509 66.667 0.00 0.00 45.15 3.28
381 385 2.746277 GCGATGGCTCGGTTTGGT 60.746 61.111 8.11 0.00 45.15 3.67
389 393 4.367023 TCGGTTTGGTCGGGAGCG 62.367 66.667 0.00 0.00 35.79 5.03
402 406 1.291272 GGAGCGTCCCAAGTACGTT 59.709 57.895 0.00 0.00 42.26 3.99
437 442 4.557205 GAGTTCTACTGGAAACGTGATGT 58.443 43.478 0.00 0.00 35.51 3.06
632 690 9.926158 ATGCATTTACATTTGAACTATGTTGAA 57.074 25.926 0.00 0.00 37.42 2.69
657 715 9.458374 AAATGAAATAGTAGTTGGTCGTTTTTG 57.542 29.630 0.00 0.00 0.00 2.44
708 806 9.097257 CATTTGTTGGAGTTGTTCTTTTACATT 57.903 29.630 0.00 0.00 0.00 2.71
711 809 8.062065 TGTTGGAGTTGTTCTTTTACATTTCT 57.938 30.769 0.00 0.00 0.00 2.52
720 818 9.883142 TTGTTCTTTTACATTTCTGTTTTGGAT 57.117 25.926 0.00 0.00 36.79 3.41
729 827 8.408043 ACATTTCTGTTTTGGATCATCTGTTA 57.592 30.769 0.00 0.00 28.70 2.41
803 963 2.091541 ACATTACCGGTTTGGAGCATG 58.908 47.619 15.04 6.80 42.00 4.06
848 1009 3.719268 TGCTCTAATTGACACATGGGT 57.281 42.857 0.00 0.00 0.00 4.51
849 1010 4.032960 TGCTCTAATTGACACATGGGTT 57.967 40.909 0.00 0.00 0.00 4.11
850 1011 4.009675 TGCTCTAATTGACACATGGGTTC 58.990 43.478 0.00 0.00 0.00 3.62
851 1012 4.009675 GCTCTAATTGACACATGGGTTCA 58.990 43.478 0.00 0.00 0.00 3.18
852 1013 4.641989 GCTCTAATTGACACATGGGTTCAT 59.358 41.667 0.00 0.00 0.00 2.57
855 1016 7.624360 TCTAATTGACACATGGGTTCATTAC 57.376 36.000 0.00 0.00 0.00 1.89
856 1017 5.659440 AATTGACACATGGGTTCATTACC 57.341 39.130 0.00 0.00 46.99 2.85
879 1040 7.573710 ACCAGTTAGGAGCATCAAAATATACA 58.426 34.615 0.00 0.00 41.22 2.29
907 1172 6.450545 TCTATTCAGGATGCTCTAATTGACG 58.549 40.000 0.00 0.00 34.76 4.35
1917 2183 0.109689 CTGGTGACCTCGACGACTTC 60.110 60.000 2.11 0.00 0.00 3.01
2028 2294 3.842925 GACACTGGCGCTTGGGGAA 62.843 63.158 7.64 0.00 0.00 3.97
2068 2334 0.980423 GGAGAACAGGAAGCTCCAGT 59.020 55.000 0.00 0.67 45.89 4.00
2934 3200 0.321564 TGCTGCGGCTATTGTGTTCT 60.322 50.000 20.27 0.00 39.59 3.01
2943 3209 4.092968 CGGCTATTGTGTTCTAAGGTTGAC 59.907 45.833 0.00 0.00 0.00 3.18
3099 3365 0.596600 TGCTCCGTCGTGTTCTTGTC 60.597 55.000 0.00 0.00 0.00 3.18
3225 3491 4.410492 AATGTTTGAGTCATTCGCAGAC 57.590 40.909 0.00 0.00 34.32 3.51
3327 3593 5.426504 CAGCTGGTGAATCTTCTTATGAGT 58.573 41.667 5.57 0.00 0.00 3.41
3782 4132 9.042008 ACAACTTGGATATTTATGTGTACGATC 57.958 33.333 0.00 0.00 0.00 3.69
3810 4160 1.198713 AGAACATCTCCACGGATGCT 58.801 50.000 4.63 0.00 44.81 3.79
3850 4200 4.862641 AAAATGGCTATAGGTGAGGTGT 57.137 40.909 1.04 0.00 0.00 4.16
3855 4205 3.585289 TGGCTATAGGTGAGGTGTGAAAA 59.415 43.478 1.04 0.00 0.00 2.29
3917 4278 4.778534 ATTTGAGAACCACATGAAGCAG 57.221 40.909 0.00 0.00 0.00 4.24
3920 4281 2.079925 GAGAACCACATGAAGCAGGAC 58.920 52.381 0.00 0.00 0.00 3.85
3921 4282 1.421268 AGAACCACATGAAGCAGGACA 59.579 47.619 0.00 0.00 0.00 4.02
3968 4337 4.947147 GGCCAACTCCACCGTGCA 62.947 66.667 0.00 0.00 0.00 4.57
3983 4352 2.159490 TGCAACCCCATCCTGTCCA 61.159 57.895 0.00 0.00 0.00 4.02
4180 4555 1.972660 GCCTGTCGGGGACAATAGCT 61.973 60.000 0.00 0.00 42.26 3.32
4183 4558 0.981183 TGTCGGGGACAATAGCTGTT 59.019 50.000 0.00 0.00 39.78 3.16
4202 4577 3.121030 CTCCGCTCCCAACGCTTG 61.121 66.667 0.00 0.00 0.00 4.01
4270 4650 2.948720 GCCTCCTCACCGTTCAGCT 61.949 63.158 0.00 0.00 0.00 4.24
4310 4690 4.498520 CGTCTCGACATGGCCGCT 62.499 66.667 0.00 0.00 0.00 5.52
4349 4729 1.393539 CTGTAGTTTTGGCCGTCGATG 59.606 52.381 0.00 0.00 0.00 3.84
4396 4782 2.599281 TCGCAGAGGGGACACGAA 60.599 61.111 0.00 0.00 0.00 3.85
4510 4896 0.318784 GATTATCGCGGCCTCTTCGT 60.319 55.000 6.13 0.00 0.00 3.85
4566 4952 3.846588 ACAAAGGTATGGACAGTGGAGAT 59.153 43.478 0.00 0.00 0.00 2.75
4626 5012 1.063616 TCGTCGTCGGATGATGAAGAC 59.936 52.381 17.56 0.00 41.64 3.01
4644 5030 1.064003 ACCTTGTGGTGGATGCACTA 58.936 50.000 17.44 8.52 46.51 2.74
4675 5061 0.314935 CCACATTCAACGGCAGCTTT 59.685 50.000 0.00 0.00 0.00 3.51
4720 5106 1.071471 CGTGCTCCCAACCTGAACT 59.929 57.895 0.00 0.00 0.00 3.01
4805 5191 1.668751 GCTGGATAAATTTCGTCGCCA 59.331 47.619 0.00 0.00 0.00 5.69
4816 5202 1.715993 TCGTCGCCATTTTCGAATGA 58.284 45.000 0.00 0.00 37.73 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.944386 GTGCGCAAGAGGAACAAGAA 59.056 50.000 14.00 0.00 43.02 2.52
3 4 1.221466 CGTGCGCAAGAGGAACAAGA 61.221 55.000 19.03 0.00 43.02 3.02
4 5 1.205064 CGTGCGCAAGAGGAACAAG 59.795 57.895 19.03 0.00 43.02 3.16
5 6 2.892334 GCGTGCGCAAGAGGAACAA 61.892 57.895 27.63 0.00 41.49 2.83
6 7 3.345808 GCGTGCGCAAGAGGAACA 61.346 61.111 27.63 0.00 41.49 3.18
7 8 4.090057 GGCGTGCGCAAGAGGAAC 62.090 66.667 27.63 8.41 44.11 3.62
8 9 3.899981 ATGGCGTGCGCAAGAGGAA 62.900 57.895 27.63 8.69 44.11 3.36
9 10 4.393155 ATGGCGTGCGCAAGAGGA 62.393 61.111 27.63 9.55 44.11 3.71
10 11 3.869272 GATGGCGTGCGCAAGAGG 61.869 66.667 27.63 10.92 44.11 3.69
11 12 2.370824 GATGATGGCGTGCGCAAGAG 62.371 60.000 27.63 15.49 44.11 2.85
12 13 2.436469 ATGATGGCGTGCGCAAGA 60.436 55.556 27.63 7.40 44.11 3.02
13 14 2.023741 GATGATGGCGTGCGCAAG 59.976 61.111 19.46 19.46 44.11 4.01
14 15 2.436469 AGATGATGGCGTGCGCAA 60.436 55.556 14.00 7.59 44.11 4.85
15 16 2.891936 GAGATGATGGCGTGCGCA 60.892 61.111 18.36 5.66 44.11 6.09
16 17 3.643978 GGAGATGATGGCGTGCGC 61.644 66.667 8.17 8.17 41.06 6.09
17 18 1.596203 ATGGAGATGATGGCGTGCG 60.596 57.895 0.00 0.00 0.00 5.34
18 19 1.947013 CATGGAGATGATGGCGTGC 59.053 57.895 0.00 0.00 0.00 5.34
19 20 0.534427 AGCATGGAGATGATGGCGTG 60.534 55.000 0.00 0.00 0.00 5.34
20 21 0.182061 AAGCATGGAGATGATGGCGT 59.818 50.000 0.00 0.00 0.00 5.68
21 22 0.591659 CAAGCATGGAGATGATGGCG 59.408 55.000 0.00 0.00 0.00 5.69
22 23 1.977056 TCAAGCATGGAGATGATGGC 58.023 50.000 0.00 0.00 0.00 4.40
23 24 3.552875 AGTTCAAGCATGGAGATGATGG 58.447 45.455 0.00 0.00 0.00 3.51
24 25 4.733815 GCAAGTTCAAGCATGGAGATGATG 60.734 45.833 0.00 0.00 0.00 3.07
25 26 3.380637 GCAAGTTCAAGCATGGAGATGAT 59.619 43.478 0.00 0.00 0.00 2.45
26 27 2.751259 GCAAGTTCAAGCATGGAGATGA 59.249 45.455 0.00 0.00 0.00 2.92
27 28 2.753452 AGCAAGTTCAAGCATGGAGATG 59.247 45.455 0.00 0.00 0.00 2.90
28 29 3.015327 GAGCAAGTTCAAGCATGGAGAT 58.985 45.455 0.00 0.00 0.00 2.75
29 30 2.430465 GAGCAAGTTCAAGCATGGAGA 58.570 47.619 0.00 0.00 0.00 3.71
30 31 1.471684 GGAGCAAGTTCAAGCATGGAG 59.528 52.381 0.00 0.00 0.00 3.86
31 32 1.202915 TGGAGCAAGTTCAAGCATGGA 60.203 47.619 0.00 0.00 0.00 3.41
32 33 1.250328 TGGAGCAAGTTCAAGCATGG 58.750 50.000 0.00 0.00 0.00 3.66
33 34 2.352421 CCTTGGAGCAAGTTCAAGCATG 60.352 50.000 0.00 0.00 39.58 4.06
34 35 1.891150 CCTTGGAGCAAGTTCAAGCAT 59.109 47.619 0.00 0.00 39.58 3.79
35 36 1.321474 CCTTGGAGCAAGTTCAAGCA 58.679 50.000 0.00 0.00 39.58 3.91
36 37 1.322442 ACCTTGGAGCAAGTTCAAGC 58.678 50.000 0.00 0.00 39.58 4.01
37 38 2.951642 TGAACCTTGGAGCAAGTTCAAG 59.048 45.455 2.15 0.00 39.58 3.02
38 39 3.011566 TGAACCTTGGAGCAAGTTCAA 57.988 42.857 2.15 0.00 39.58 2.69
39 40 2.727123 TGAACCTTGGAGCAAGTTCA 57.273 45.000 0.54 0.54 39.58 3.18
40 41 3.416156 AGATGAACCTTGGAGCAAGTTC 58.584 45.455 0.00 0.00 39.58 3.01
41 42 3.515602 AGATGAACCTTGGAGCAAGTT 57.484 42.857 0.00 0.00 39.58 2.66
42 43 3.515602 AAGATGAACCTTGGAGCAAGT 57.484 42.857 0.00 0.00 39.58 3.16
43 44 4.077822 AGAAAGATGAACCTTGGAGCAAG 58.922 43.478 0.00 0.00 40.75 4.01
44 45 4.104383 AGAAAGATGAACCTTGGAGCAA 57.896 40.909 0.00 0.00 0.00 3.91
45 46 3.795688 AGAAAGATGAACCTTGGAGCA 57.204 42.857 0.00 0.00 0.00 4.26
46 47 3.823304 ACAAGAAAGATGAACCTTGGAGC 59.177 43.478 0.00 0.00 40.02 4.70
47 48 4.457257 GGACAAGAAAGATGAACCTTGGAG 59.543 45.833 0.00 0.00 40.02 3.86
48 49 4.141274 TGGACAAGAAAGATGAACCTTGGA 60.141 41.667 0.00 0.00 40.02 3.53
49 50 4.144297 TGGACAAGAAAGATGAACCTTGG 58.856 43.478 0.00 0.00 40.02 3.61
50 51 5.766222 CTTGGACAAGAAAGATGAACCTTG 58.234 41.667 6.19 0.00 40.79 3.61
51 52 4.279420 GCTTGGACAAGAAAGATGAACCTT 59.721 41.667 15.76 0.00 40.79 3.50
52 53 3.823304 GCTTGGACAAGAAAGATGAACCT 59.177 43.478 15.76 0.00 40.79 3.50
53 54 3.823304 AGCTTGGACAAGAAAGATGAACC 59.177 43.478 15.76 0.00 40.79 3.62
54 55 5.123027 CCTAGCTTGGACAAGAAAGATGAAC 59.877 44.000 15.76 0.00 40.79 3.18
55 56 5.248640 CCTAGCTTGGACAAGAAAGATGAA 58.751 41.667 15.76 0.00 40.79 2.57
56 57 4.836825 CCTAGCTTGGACAAGAAAGATGA 58.163 43.478 15.76 0.00 40.79 2.92
57 58 3.376546 GCCTAGCTTGGACAAGAAAGATG 59.623 47.826 19.07 2.37 40.79 2.90
58 59 3.615155 GCCTAGCTTGGACAAGAAAGAT 58.385 45.455 19.07 0.00 40.79 2.40
59 60 2.290323 GGCCTAGCTTGGACAAGAAAGA 60.290 50.000 19.07 0.00 40.79 2.52
60 61 2.087646 GGCCTAGCTTGGACAAGAAAG 58.912 52.381 19.07 10.67 40.79 2.62
61 62 1.271926 GGGCCTAGCTTGGACAAGAAA 60.272 52.381 22.18 2.01 40.79 2.52
62 63 0.328258 GGGCCTAGCTTGGACAAGAA 59.672 55.000 22.18 2.35 40.79 2.52
63 64 0.547712 AGGGCCTAGCTTGGACAAGA 60.548 55.000 22.18 0.00 40.79 3.02
64 65 0.329596 AAGGGCCTAGCTTGGACAAG 59.670 55.000 22.18 7.67 36.67 3.16
65 66 0.328258 GAAGGGCCTAGCTTGGACAA 59.672 55.000 22.18 0.00 36.67 3.18
66 67 0.840288 TGAAGGGCCTAGCTTGGACA 60.840 55.000 22.18 8.09 36.67 4.02
67 68 0.548510 ATGAAGGGCCTAGCTTGGAC 59.451 55.000 19.07 15.78 0.00 4.02
68 69 1.298953 AATGAAGGGCCTAGCTTGGA 58.701 50.000 19.07 0.00 0.00 3.53
69 70 1.753073 CAAATGAAGGGCCTAGCTTGG 59.247 52.381 6.41 10.15 0.00 3.61
70 71 2.450476 ACAAATGAAGGGCCTAGCTTG 58.550 47.619 6.41 11.03 0.00 4.01
71 72 2.907458 ACAAATGAAGGGCCTAGCTT 57.093 45.000 6.41 0.00 0.00 3.74
72 73 3.891049 CTTACAAATGAAGGGCCTAGCT 58.109 45.455 6.41 0.00 0.00 3.32
73 74 2.359214 GCTTACAAATGAAGGGCCTAGC 59.641 50.000 6.41 4.69 0.00 3.42
74 75 3.620488 TGCTTACAAATGAAGGGCCTAG 58.380 45.455 6.41 0.00 0.00 3.02
75 76 3.730215 TGCTTACAAATGAAGGGCCTA 57.270 42.857 6.41 0.00 0.00 3.93
76 77 2.603075 TGCTTACAAATGAAGGGCCT 57.397 45.000 0.00 0.00 0.00 5.19
77 78 3.676291 TTTGCTTACAAATGAAGGGCC 57.324 42.857 0.00 0.00 40.84 5.80
78 79 4.376146 TGTTTTGCTTACAAATGAAGGGC 58.624 39.130 0.00 0.00 44.96 5.19
79 80 6.917217 TTTGTTTTGCTTACAAATGAAGGG 57.083 33.333 7.27 0.00 44.96 3.95
104 105 5.972107 ATGATGCTGCCTAAATTGGATAC 57.028 39.130 0.00 0.00 0.00 2.24
105 106 8.111545 AGAATATGATGCTGCCTAAATTGGATA 58.888 33.333 0.00 0.00 0.00 2.59
106 107 6.952358 AGAATATGATGCTGCCTAAATTGGAT 59.048 34.615 0.00 0.00 0.00 3.41
107 108 6.309357 AGAATATGATGCTGCCTAAATTGGA 58.691 36.000 0.00 0.00 0.00 3.53
108 109 6.208007 TGAGAATATGATGCTGCCTAAATTGG 59.792 38.462 0.00 0.00 0.00 3.16
109 110 7.210718 TGAGAATATGATGCTGCCTAAATTG 57.789 36.000 0.00 0.00 0.00 2.32
110 111 7.668469 TCATGAGAATATGATGCTGCCTAAATT 59.332 33.333 0.00 0.00 32.39 1.82
111 112 7.173032 TCATGAGAATATGATGCTGCCTAAAT 58.827 34.615 0.00 0.00 32.39 1.40
112 113 6.536447 TCATGAGAATATGATGCTGCCTAAA 58.464 36.000 0.00 0.00 32.39 1.85
113 114 6.117975 TCATGAGAATATGATGCTGCCTAA 57.882 37.500 0.00 0.00 32.39 2.69
114 115 5.750352 TCATGAGAATATGATGCTGCCTA 57.250 39.130 0.00 0.00 32.39 3.93
115 116 4.635699 TCATGAGAATATGATGCTGCCT 57.364 40.909 0.00 0.00 32.39 4.75
116 117 4.517832 TGTTCATGAGAATATGATGCTGCC 59.482 41.667 0.00 0.00 36.97 4.85
117 118 5.684550 TGTTCATGAGAATATGATGCTGC 57.315 39.130 0.00 0.00 36.97 5.25
118 119 9.216117 TCTAATGTTCATGAGAATATGATGCTG 57.784 33.333 0.00 0.00 35.97 4.41
119 120 9.788889 TTCTAATGTTCATGAGAATATGATGCT 57.211 29.630 8.14 0.00 35.97 3.79
123 124 9.987272 ACGATTCTAATGTTCATGAGAATATGA 57.013 29.630 19.52 0.00 38.46 2.15
128 129 9.430623 TGTTAACGATTCTAATGTTCATGAGAA 57.569 29.630 13.11 13.11 32.73 2.87
129 130 8.996024 TGTTAACGATTCTAATGTTCATGAGA 57.004 30.769 0.26 0.00 0.00 3.27
130 131 9.694520 CTTGTTAACGATTCTAATGTTCATGAG 57.305 33.333 0.26 0.00 0.00 2.90
131 132 9.430623 TCTTGTTAACGATTCTAATGTTCATGA 57.569 29.630 0.26 0.00 0.00 3.07
143 144 9.326339 GGTACTTTCATTTCTTGTTAACGATTC 57.674 33.333 0.26 0.00 0.00 2.52
144 145 9.063615 AGGTACTTTCATTTCTTGTTAACGATT 57.936 29.630 0.26 0.00 27.25 3.34
145 146 8.504005 CAGGTACTTTCATTTCTTGTTAACGAT 58.496 33.333 0.26 0.00 34.60 3.73
146 147 7.041644 CCAGGTACTTTCATTTCTTGTTAACGA 60.042 37.037 0.26 0.00 34.60 3.85
147 148 7.075741 CCAGGTACTTTCATTTCTTGTTAACG 58.924 38.462 0.26 0.00 34.60 3.18
148 149 7.937649 ACCAGGTACTTTCATTTCTTGTTAAC 58.062 34.615 0.00 0.00 34.60 2.01
149 150 9.629878 TTACCAGGTACTTTCATTTCTTGTTAA 57.370 29.630 0.00 0.00 34.60 2.01
150 151 9.802039 ATTACCAGGTACTTTCATTTCTTGTTA 57.198 29.630 0.00 0.00 34.60 2.41
151 152 8.706322 ATTACCAGGTACTTTCATTTCTTGTT 57.294 30.769 0.00 0.00 34.60 2.83
152 153 8.706322 AATTACCAGGTACTTTCATTTCTTGT 57.294 30.769 0.00 0.00 34.60 3.16
159 160 8.474831 GCCAATTAAATTACCAGGTACTTTCAT 58.525 33.333 16.28 9.89 34.60 2.57
160 161 7.362229 CGCCAATTAAATTACCAGGTACTTTCA 60.362 37.037 16.28 8.17 34.60 2.69
161 162 6.970613 CGCCAATTAAATTACCAGGTACTTTC 59.029 38.462 16.28 3.28 34.60 2.62
162 163 6.434965 ACGCCAATTAAATTACCAGGTACTTT 59.565 34.615 16.84 16.84 34.60 2.66
163 164 5.947566 ACGCCAATTAAATTACCAGGTACTT 59.052 36.000 0.00 0.00 34.60 2.24
164 165 5.355910 CACGCCAATTAAATTACCAGGTACT 59.644 40.000 0.00 0.00 43.88 2.73
165 166 5.575019 CACGCCAATTAAATTACCAGGTAC 58.425 41.667 0.00 0.00 0.00 3.34
166 167 4.096682 GCACGCCAATTAAATTACCAGGTA 59.903 41.667 0.00 0.00 0.00 3.08
167 168 3.119280 GCACGCCAATTAAATTACCAGGT 60.119 43.478 0.00 0.00 0.00 4.00
168 169 3.443976 GCACGCCAATTAAATTACCAGG 58.556 45.455 0.00 0.00 0.00 4.45
169 170 3.105203 CGCACGCCAATTAAATTACCAG 58.895 45.455 0.00 0.00 0.00 4.00
170 171 2.732597 GCGCACGCCAATTAAATTACCA 60.733 45.455 0.30 0.00 34.56 3.25
171 172 1.849829 GCGCACGCCAATTAAATTACC 59.150 47.619 0.30 0.00 34.56 2.85
172 173 1.511147 CGCGCACGCCAATTAAATTAC 59.489 47.619 8.75 0.00 37.98 1.89
173 174 1.397343 TCGCGCACGCCAATTAAATTA 59.603 42.857 8.75 0.00 39.84 1.40
174 175 0.169230 TCGCGCACGCCAATTAAATT 59.831 45.000 8.75 0.00 39.84 1.82
175 176 0.248054 CTCGCGCACGCCAATTAAAT 60.248 50.000 8.75 0.00 39.84 1.40
176 177 1.133664 CTCGCGCACGCCAATTAAA 59.866 52.632 8.75 0.00 39.84 1.52
177 178 2.781957 CTCGCGCACGCCAATTAA 59.218 55.556 8.75 0.00 39.84 1.40
178 179 3.860125 GCTCGCGCACGCCAATTA 61.860 61.111 8.75 0.00 39.84 1.40
183 184 4.933064 ATAGAGCTCGCGCACGCC 62.933 66.667 8.75 3.38 39.84 5.68
184 185 1.206745 TTAATAGAGCTCGCGCACGC 61.207 55.000 8.75 9.28 39.84 5.34
185 186 1.409412 ATTAATAGAGCTCGCGCACG 58.591 50.000 8.75 0.00 39.10 5.34
186 187 2.096713 CCAATTAATAGAGCTCGCGCAC 60.097 50.000 8.75 0.00 39.10 5.34
187 188 2.135139 CCAATTAATAGAGCTCGCGCA 58.865 47.619 8.75 0.00 39.10 6.09
188 189 2.135933 ACCAATTAATAGAGCTCGCGC 58.864 47.619 8.37 0.00 0.00 6.86
189 190 2.731976 GGACCAATTAATAGAGCTCGCG 59.268 50.000 8.37 0.00 0.00 5.87
190 191 3.728845 TGGACCAATTAATAGAGCTCGC 58.271 45.455 8.37 0.00 0.00 5.03
191 192 4.950050 ACTGGACCAATTAATAGAGCTCG 58.050 43.478 8.37 0.00 0.00 5.03
192 193 7.445945 ACATACTGGACCAATTAATAGAGCTC 58.554 38.462 5.27 5.27 0.00 4.09
193 194 7.380423 ACATACTGGACCAATTAATAGAGCT 57.620 36.000 0.00 0.00 0.00 4.09
199 200 7.607991 GCTGCTATACATACTGGACCAATTAAT 59.392 37.037 0.00 0.00 0.00 1.40
200 201 6.934645 GCTGCTATACATACTGGACCAATTAA 59.065 38.462 0.00 0.00 0.00 1.40
201 202 6.042666 TGCTGCTATACATACTGGACCAATTA 59.957 38.462 0.00 0.00 0.00 1.40
202 203 5.163205 TGCTGCTATACATACTGGACCAATT 60.163 40.000 0.00 0.00 0.00 2.32
203 204 4.347876 TGCTGCTATACATACTGGACCAAT 59.652 41.667 0.00 0.00 0.00 3.16
204 205 3.709141 TGCTGCTATACATACTGGACCAA 59.291 43.478 0.00 0.00 0.00 3.67
205 206 3.304829 TGCTGCTATACATACTGGACCA 58.695 45.455 0.00 0.00 0.00 4.02
206 207 3.306364 CCTGCTGCTATACATACTGGACC 60.306 52.174 0.00 0.00 0.00 4.46
207 208 3.306364 CCCTGCTGCTATACATACTGGAC 60.306 52.174 0.00 0.00 0.00 4.02
208 209 2.899900 CCCTGCTGCTATACATACTGGA 59.100 50.000 0.00 0.00 0.00 3.86
209 210 2.027745 CCCCTGCTGCTATACATACTGG 60.028 54.545 0.00 0.00 0.00 4.00
210 211 2.613977 GCCCCTGCTGCTATACATACTG 60.614 54.545 0.00 0.00 33.53 2.74
211 212 1.625818 GCCCCTGCTGCTATACATACT 59.374 52.381 0.00 0.00 33.53 2.12
212 213 2.100605 GCCCCTGCTGCTATACATAC 57.899 55.000 0.00 0.00 33.53 2.39
224 225 0.465642 GTTACACCCATAGCCCCTGC 60.466 60.000 0.00 0.00 37.95 4.85
225 226 0.916086 TGTTACACCCATAGCCCCTG 59.084 55.000 0.00 0.00 0.00 4.45
226 227 1.676248 TTGTTACACCCATAGCCCCT 58.324 50.000 0.00 0.00 0.00 4.79
227 228 2.306847 CATTGTTACACCCATAGCCCC 58.693 52.381 0.00 0.00 0.00 5.80
228 229 2.306847 CCATTGTTACACCCATAGCCC 58.693 52.381 0.00 0.00 0.00 5.19
229 230 3.012934 ACCATTGTTACACCCATAGCC 57.987 47.619 0.00 0.00 0.00 3.93
230 231 5.825679 TCAATACCATTGTTACACCCATAGC 59.174 40.000 0.00 0.00 0.00 2.97
231 232 7.502226 ACATCAATACCATTGTTACACCCATAG 59.498 37.037 0.00 0.00 0.00 2.23
232 233 7.350382 ACATCAATACCATTGTTACACCCATA 58.650 34.615 0.00 0.00 0.00 2.74
233 234 6.194235 ACATCAATACCATTGTTACACCCAT 58.806 36.000 0.00 0.00 0.00 4.00
234 235 5.575157 ACATCAATACCATTGTTACACCCA 58.425 37.500 0.00 0.00 0.00 4.51
235 236 5.067283 GGACATCAATACCATTGTTACACCC 59.933 44.000 0.00 0.00 0.00 4.61
236 237 5.885912 AGGACATCAATACCATTGTTACACC 59.114 40.000 0.00 0.00 0.00 4.16
237 238 7.391148 AAGGACATCAATACCATTGTTACAC 57.609 36.000 0.00 0.00 0.00 2.90
238 239 9.337396 GATAAGGACATCAATACCATTGTTACA 57.663 33.333 0.00 0.00 0.00 2.41
239 240 9.337396 TGATAAGGACATCAATACCATTGTTAC 57.663 33.333 0.00 0.00 32.01 2.50
240 241 9.559732 CTGATAAGGACATCAATACCATTGTTA 57.440 33.333 0.00 0.00 34.59 2.41
241 242 8.274322 TCTGATAAGGACATCAATACCATTGTT 58.726 33.333 0.00 0.00 34.59 2.83
242 243 7.716998 GTCTGATAAGGACATCAATACCATTGT 59.283 37.037 0.00 0.00 34.59 2.71
243 244 7.935755 AGTCTGATAAGGACATCAATACCATTG 59.064 37.037 0.00 0.00 34.59 2.82
244 245 8.038862 AGTCTGATAAGGACATCAATACCATT 57.961 34.615 0.00 0.00 34.59 3.16
245 246 7.290948 TGAGTCTGATAAGGACATCAATACCAT 59.709 37.037 0.00 0.00 34.59 3.55
246 247 6.611236 TGAGTCTGATAAGGACATCAATACCA 59.389 38.462 0.00 0.00 34.59 3.25
247 248 7.055667 TGAGTCTGATAAGGACATCAATACC 57.944 40.000 0.00 0.00 34.59 2.73
248 249 7.117523 GCATGAGTCTGATAAGGACATCAATAC 59.882 40.741 0.00 0.00 34.59 1.89
249 250 7.157347 GCATGAGTCTGATAAGGACATCAATA 58.843 38.462 0.00 0.00 34.59 1.90
250 251 5.996513 GCATGAGTCTGATAAGGACATCAAT 59.003 40.000 0.00 0.00 34.59 2.57
251 252 5.363101 GCATGAGTCTGATAAGGACATCAA 58.637 41.667 0.00 0.00 34.59 2.57
252 253 4.202295 GGCATGAGTCTGATAAGGACATCA 60.202 45.833 0.00 0.00 36.29 3.07
253 254 4.314121 GGCATGAGTCTGATAAGGACATC 58.686 47.826 0.00 0.00 36.29 3.06
254 255 3.244009 CGGCATGAGTCTGATAAGGACAT 60.244 47.826 0.00 0.00 36.29 3.06
255 256 2.101415 CGGCATGAGTCTGATAAGGACA 59.899 50.000 0.00 0.00 36.29 4.02
256 257 2.748605 CGGCATGAGTCTGATAAGGAC 58.251 52.381 0.00 0.00 0.00 3.85
257 258 1.069204 GCGGCATGAGTCTGATAAGGA 59.931 52.381 0.00 0.00 0.00 3.36
258 259 1.202568 TGCGGCATGAGTCTGATAAGG 60.203 52.381 0.00 0.00 0.00 2.69
259 260 2.133553 CTGCGGCATGAGTCTGATAAG 58.866 52.381 1.75 0.00 0.00 1.73
260 261 1.202568 CCTGCGGCATGAGTCTGATAA 60.203 52.381 1.75 0.00 0.00 1.75
261 262 0.390492 CCTGCGGCATGAGTCTGATA 59.610 55.000 1.75 0.00 0.00 2.15
262 263 1.145598 CCTGCGGCATGAGTCTGAT 59.854 57.895 1.75 0.00 0.00 2.90
263 264 2.580815 CCTGCGGCATGAGTCTGA 59.419 61.111 1.75 0.00 0.00 3.27
264 265 2.513204 CCCTGCGGCATGAGTCTG 60.513 66.667 1.75 0.00 0.00 3.51
309 313 2.163815 CGCCGGTCTCTTCTTCTTCTTA 59.836 50.000 1.90 0.00 0.00 2.10
345 349 4.778415 GCCTCGTCGCTCTCGCAA 62.778 66.667 0.00 0.00 35.30 4.85
389 393 0.672711 GGCCTGAACGTACTTGGGAC 60.673 60.000 0.00 0.00 0.00 4.46
402 406 2.604686 AACTCCTGCTCGGCCTGA 60.605 61.111 0.00 0.00 0.00 3.86
437 442 4.461081 CCTCCTTCTTCTTCTTCTTCTCGA 59.539 45.833 0.00 0.00 0.00 4.04
493 507 1.736586 GATGACTCGCTGGGATCGT 59.263 57.895 0.00 0.00 0.00 3.73
562 581 0.535335 GTTGTCCGAGGGCATCTACA 59.465 55.000 0.00 0.00 0.00 2.74
632 690 8.842280 TCAAAAACGACCAACTACTATTTCATT 58.158 29.630 0.00 0.00 0.00 2.57
685 783 8.527810 AGAAATGTAAAAGAACAACTCCAACAA 58.472 29.630 0.00 0.00 32.02 2.83
708 806 7.453393 ACTCTAACAGATGATCCAAAACAGAA 58.547 34.615 0.00 0.00 0.00 3.02
711 809 9.219603 CTTAACTCTAACAGATGATCCAAAACA 57.780 33.333 0.00 0.00 0.00 2.83
773 878 9.694137 CTCCAAACCGGTAATGTAAAAATTTAA 57.306 29.630 8.00 0.00 35.57 1.52
848 1009 5.692115 TGATGCTCCTAACTGGTAATGAA 57.308 39.130 0.00 0.00 37.07 2.57
849 1010 5.692115 TTGATGCTCCTAACTGGTAATGA 57.308 39.130 0.00 0.00 37.07 2.57
850 1011 6.757897 TTTTGATGCTCCTAACTGGTAATG 57.242 37.500 0.00 0.00 37.07 1.90
852 1013 9.555727 GTATATTTTGATGCTCCTAACTGGTAA 57.444 33.333 0.00 0.00 37.07 2.85
855 1016 8.627208 ATGTATATTTTGATGCTCCTAACTGG 57.373 34.615 0.00 0.00 37.10 4.00
856 1017 9.276590 TGATGTATATTTTGATGCTCCTAACTG 57.723 33.333 0.00 0.00 0.00 3.16
879 1040 8.823794 TCAATTAGAGCATCCTGAATAGATGAT 58.176 33.333 4.98 0.00 42.75 2.45
1039 1305 1.272704 GCAGGACAGGGGAAAAGGAAT 60.273 52.381 0.00 0.00 0.00 3.01
2028 2294 5.014858 TCCAGGTAGTACTTCTTGAATCGT 58.985 41.667 12.37 0.00 0.00 3.73
2391 2657 3.981071 AGCAGCAAGTCATGGTACTTA 57.019 42.857 0.00 0.00 37.61 2.24
2535 2801 1.064017 ACATATGGGAATGCCGGTGTT 60.064 47.619 7.80 0.00 33.83 3.32
2934 3200 2.675844 CCGCATGAATTCGTCAACCTTA 59.324 45.455 0.00 0.00 40.50 2.69
2943 3209 1.331447 TCAGATTGCCGCATGAATTCG 59.669 47.619 0.00 0.00 0.00 3.34
3099 3365 3.001026 CAGAGATATGCACAAGAACTGCG 59.999 47.826 0.00 0.00 37.46 5.18
3225 3491 0.883833 GGAACAGGCTGGACATGTTG 59.116 55.000 20.34 0.00 37.29 3.33
3234 3500 0.248843 GAGAGTCCAGGAACAGGCTG 59.751 60.000 14.16 14.16 33.77 4.85
3327 3593 2.621070 AGGAAGTTCTCTGGGCTGTTA 58.379 47.619 2.25 0.00 0.00 2.41
3743 4093 5.957842 TCCAAGTTGTTATTGCAAGGTAG 57.042 39.130 4.94 0.00 0.00 3.18
3777 4127 6.377429 TGGAGATGTTCTTAGTTGTAGATCGT 59.623 38.462 0.00 0.00 0.00 3.73
3782 4132 5.103000 CCGTGGAGATGTTCTTAGTTGTAG 58.897 45.833 0.00 0.00 0.00 2.74
3810 4160 7.255416 GCCATTTTTAGGGCTTCAAATTTTTGA 60.255 33.333 1.66 1.66 46.74 2.69
3917 4278 0.902531 TTTGGATCCGTCTCCTGTCC 59.097 55.000 7.39 0.00 36.20 4.02
3920 4281 2.744202 CAGTTTTTGGATCCGTCTCCTG 59.256 50.000 7.39 6.70 36.20 3.86
3921 4282 2.637872 TCAGTTTTTGGATCCGTCTCCT 59.362 45.455 7.39 0.00 36.20 3.69
3968 4337 3.077907 CGTGGACAGGATGGGGTT 58.922 61.111 0.00 0.00 43.62 4.11
4024 4394 1.731613 CGTTTGAGACCGCACGCTA 60.732 57.895 0.00 0.00 0.00 4.26
4057 4427 0.108992 TGGATCGAAAACGGACGGAG 60.109 55.000 0.00 0.00 0.00 4.63
4180 4555 2.747686 GTTGGGAGCGGAGGAACA 59.252 61.111 0.00 0.00 0.00 3.18
4202 4577 3.844090 GCGGGAGAGAGAGGGTGC 61.844 72.222 0.00 0.00 0.00 5.01
4232 4612 3.912907 CCGGAGAATAGCGGCGGT 61.913 66.667 18.21 18.21 0.00 5.68
4270 4650 3.682644 TTGATAGGGACGGCCGGGA 62.683 63.158 31.76 9.75 33.83 5.14
4285 4665 1.778334 CATGTCGAGACGTGGTTTGA 58.222 50.000 15.59 0.00 42.91 2.69
4310 4690 2.666862 CAAAGTGCGGGCGTGGTA 60.667 61.111 0.00 0.00 0.00 3.25
4322 4702 1.686587 GGCCAAAACTACAGCCAAAGT 59.313 47.619 0.00 0.00 45.07 2.66
4330 4710 1.434555 CATCGACGGCCAAAACTACA 58.565 50.000 2.24 0.00 0.00 2.74
4480 4866 1.548973 GCGATAATCACCTGGACGCG 61.549 60.000 3.53 3.53 35.78 6.01
4486 4872 0.946221 GAGGCCGCGATAATCACCTG 60.946 60.000 8.23 0.00 0.00 4.00
4510 4896 3.542676 ACCTTGCGGTCGTGGTGA 61.543 61.111 0.00 0.00 40.27 4.02
4566 4952 5.694995 AGGAAGTGATGGAAGAAAAACTCA 58.305 37.500 0.00 0.00 0.00 3.41
4626 5012 1.003580 ACTAGTGCATCCACCACAAGG 59.996 52.381 0.00 0.00 43.09 3.61
4675 5061 1.000019 CTGACCCCCTGTACCGAGA 60.000 63.158 0.00 0.00 0.00 4.04
4720 5106 2.596851 GGCCTCTCTCCCTGTTGCA 61.597 63.158 0.00 0.00 0.00 4.08
4805 5191 4.789012 ACATGCCTTGTCATTCGAAAAT 57.211 36.364 0.00 0.00 30.89 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.