Multiple sequence alignment - TraesCS3A01G198800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G198800 chr3A 100.000 6588 0 0 1 6588 316674887 316668300 0.000000e+00 12166.0
1 TraesCS3A01G198800 chr3A 79.953 429 67 14 4363 4779 56951094 56950673 1.390000e-76 298.0
2 TraesCS3A01G198800 chr3A 90.104 192 19 0 6167 6358 699851845 699851654 3.940000e-62 250.0
3 TraesCS3A01G198800 chr3A 89.055 201 21 1 6167 6366 616251769 616251569 1.420000e-61 248.0
4 TraesCS3A01G198800 chr3A 83.621 232 30 6 5360 5585 439910257 439910486 1.860000e-50 211.0
5 TraesCS3A01G198800 chr3A 96.429 56 1 1 6534 6588 25109849 25109904 2.530000e-14 91.6
6 TraesCS3A01G198800 chr3A 92.188 64 3 2 6527 6588 234941695 234941758 9.100000e-14 89.8
7 TraesCS3A01G198800 chr3D 95.713 2846 64 8 1807 4614 200383977 200386802 0.000000e+00 4527.0
8 TraesCS3A01G198800 chr3D 95.589 1315 30 6 492 1805 200382529 200383816 0.000000e+00 2082.0
9 TraesCS3A01G198800 chr3D 91.298 701 54 3 4666 5360 200386800 200387499 0.000000e+00 950.0
10 TraesCS3A01G198800 chr3D 78.226 1116 150 56 4774 5829 25280656 25281738 4.340000e-176 628.0
11 TraesCS3A01G198800 chr3D 95.989 374 14 1 6170 6543 200387525 200387897 2.030000e-169 606.0
12 TraesCS3A01G198800 chr3D 80.000 645 85 22 4954 5581 325413810 325413193 2.820000e-118 436.0
13 TraesCS3A01G198800 chr3D 93.182 176 12 0 6167 6342 231160435 231160260 6.550000e-65 259.0
14 TraesCS3A01G198800 chr3D 93.478 138 9 0 1 138 200382017 200382154 8.660000e-49 206.0
15 TraesCS3A01G198800 chr3D 90.789 152 11 2 169 319 200382312 200382461 4.030000e-47 200.0
16 TraesCS3A01G198800 chr3D 79.630 216 32 4 6330 6543 263345221 263345016 1.910000e-30 145.0
17 TraesCS3A01G198800 chr3D 92.157 51 1 3 6035 6083 491437159 491437110 1.190000e-07 69.4
18 TraesCS3A01G198800 chr3D 91.837 49 3 1 322 370 200382484 200382531 4.260000e-07 67.6
19 TraesCS3A01G198800 chr3B 96.953 2330 51 5 698 3026 327863349 327865659 0.000000e+00 3892.0
20 TraesCS3A01G198800 chr3B 88.435 2153 138 47 4442 6544 327867297 327869388 0.000000e+00 2494.0
21 TraesCS3A01G198800 chr3B 97.753 712 11 4 3025 3733 327865912 327866621 0.000000e+00 1221.0
22 TraesCS3A01G198800 chr3B 94.037 654 18 2 3734 4387 327866652 327867284 0.000000e+00 972.0
23 TraesCS3A01G198800 chr3B 80.714 420 72 8 4363 4778 539404363 539404777 1.070000e-82 318.0
24 TraesCS3A01G198800 chr3B 91.905 210 13 3 492 701 327862160 327862365 2.320000e-74 291.0
25 TraesCS3A01G198800 chr3B 88.557 201 22 1 6167 6366 394754913 394754713 6.600000e-60 243.0
26 TraesCS3A01G198800 chr3B 92.958 142 8 2 368 508 636270252 636270392 8.660000e-49 206.0
27 TraesCS3A01G198800 chr3B 90.678 118 11 0 202 319 327861974 327862091 2.460000e-34 158.0
28 TraesCS3A01G198800 chr3B 78.788 165 23 2 6330 6494 434060561 434060409 4.200000e-17 100.0
29 TraesCS3A01G198800 chr5A 84.729 1087 112 24 4774 5828 666043601 666042537 0.000000e+00 1038.0
30 TraesCS3A01G198800 chr5A 81.647 425 59 14 4363 4772 38575961 38576381 1.060000e-87 335.0
31 TraesCS3A01G198800 chr5A 89.848 197 17 3 6166 6361 694976127 694975933 3.940000e-62 250.0
32 TraesCS3A01G198800 chr5A 94.656 131 6 1 366 495 81476684 81476814 1.120000e-47 202.0
33 TraesCS3A01G198800 chr5A 100.000 51 0 0 6538 6588 13350480 13350430 1.960000e-15 95.3
34 TraesCS3A01G198800 chr5A 96.429 56 2 0 6533 6588 500884537 500884592 7.030000e-15 93.5
35 TraesCS3A01G198800 chr5A 96.429 56 1 1 6534 6588 316840631 316840686 2.530000e-14 91.6
36 TraesCS3A01G198800 chr7D 80.648 1080 135 36 4774 5801 32821377 32822434 0.000000e+00 769.0
37 TraesCS3A01G198800 chr7D 79.656 1106 128 51 4774 5831 319943583 319944639 0.000000e+00 706.0
38 TraesCS3A01G198800 chr7D 77.664 1070 153 56 4777 5808 482241526 482242547 2.060000e-159 573.0
39 TraesCS3A01G198800 chr7D 78.374 578 79 34 5267 5831 596704930 596705474 3.810000e-87 333.0
40 TraesCS3A01G198800 chr7D 81.818 352 57 7 4431 4779 108990436 108990089 8.360000e-74 289.0
41 TraesCS3A01G198800 chr7D 81.268 347 62 3 4435 4779 3657901 3657556 1.810000e-70 278.0
42 TraesCS3A01G198800 chr7D 91.447 152 12 1 16 167 191413755 191413905 2.410000e-49 207.0
43 TraesCS3A01G198800 chr7D 87.671 146 18 0 6398 6543 332696794 332696649 3.160000e-38 171.0
44 TraesCS3A01G198800 chr7D 95.082 61 2 1 6529 6588 207364373 207364433 1.960000e-15 95.3
45 TraesCS3A01G198800 chr1B 79.227 1112 137 59 4777 5832 149600410 149599337 0.000000e+00 688.0
46 TraesCS3A01G198800 chr1B 94.074 135 7 1 361 494 102142121 102142255 3.110000e-48 204.0
47 TraesCS3A01G198800 chr1B 92.143 140 9 2 362 500 520469795 520469933 5.210000e-46 196.0
48 TraesCS3A01G198800 chr4D 82.588 827 88 39 5020 5829 307154853 307154066 0.000000e+00 678.0
49 TraesCS3A01G198800 chr4D 79.795 584 71 25 5267 5831 478035551 478036106 1.340000e-101 381.0
50 TraesCS3A01G198800 chr4D 80.374 214 33 1 6330 6543 65137752 65137548 3.180000e-33 154.0
51 TraesCS3A01G198800 chr4D 80.412 194 22 11 5648 5831 101393356 101393543 4.140000e-27 134.0
52 TraesCS3A01G198800 chr4D 85.526 76 11 0 6330 6405 291744962 291745037 5.480000e-11 80.5
53 TraesCS3A01G198800 chr4D 92.157 51 1 3 6035 6083 167128787 167128836 1.190000e-07 69.4
54 TraesCS3A01G198800 chr4D 92.157 51 1 3 6035 6083 398387064 398387113 1.190000e-07 69.4
55 TraesCS3A01G198800 chr5D 82.222 765 93 22 4774 5523 543769294 543770030 2.610000e-173 619.0
56 TraesCS3A01G198800 chr5D 73.789 1053 182 55 4827 5832 95866354 95865349 4.920000e-86 329.0
57 TraesCS3A01G198800 chr5D 83.951 81 10 2 6330 6407 352822469 352822389 2.550000e-09 75.0
58 TraesCS3A01G198800 chr5B 80.745 805 113 24 4774 5564 127544719 127545495 2.050000e-164 590.0
59 TraesCS3A01G198800 chr5B 80.965 373 54 16 4380 4743 71302156 71302520 5.030000e-71 279.0
60 TraesCS3A01G198800 chr5B 93.333 135 7 2 361 494 82212168 82212301 1.450000e-46 198.0
61 TraesCS3A01G198800 chr5B 98.113 53 1 0 6536 6588 26842083 26842135 7.030000e-15 93.5
62 TraesCS3A01G198800 chr5B 75.943 212 30 9 6330 6539 415788690 415788498 9.100000e-14 89.8
63 TraesCS3A01G198800 chr7B 81.023 743 107 19 4780 5515 229818724 229818009 1.600000e-155 560.0
64 TraesCS3A01G198800 chr7B 90.155 193 16 3 6148 6339 52907036 52907226 1.420000e-61 248.0
65 TraesCS3A01G198800 chr7B 72.368 760 121 55 5116 5833 32360820 32360108 2.460000e-34 158.0
66 TraesCS3A01G198800 chr7B 77.432 257 39 15 5586 5835 242984277 242984521 1.150000e-27 135.0
67 TraesCS3A01G198800 chr4A 77.260 1095 142 54 4774 5829 255335701 255336727 1.620000e-150 544.0
68 TraesCS3A01G198800 chr4A 92.754 138 8 2 358 493 513376019 513375882 1.450000e-46 198.0
69 TraesCS3A01G198800 chr4A 87.805 164 16 4 335 494 165056501 165056664 8.720000e-44 189.0
70 TraesCS3A01G198800 chr2D 77.673 954 134 41 4926 5827 131630336 131631262 5.890000e-140 508.0
71 TraesCS3A01G198800 chr2D 76.247 1103 177 54 4774 5832 492298640 492299701 2.120000e-139 507.0
72 TraesCS3A01G198800 chr2D 80.739 379 64 9 4391 4764 11876490 11876116 3.010000e-73 287.0
73 TraesCS3A01G198800 chr2D 79.021 429 69 18 4361 4779 494648103 494647686 2.340000e-69 274.0
74 TraesCS3A01G198800 chr2D 83.010 206 26 1 6338 6543 97866323 97866127 1.890000e-40 178.0
75 TraesCS3A01G198800 chr2D 83.010 206 26 1 6338 6543 590190227 590190031 1.890000e-40 178.0
76 TraesCS3A01G198800 chr2D 79.167 216 21 6 6330 6543 155480232 155480039 1.930000e-25 128.0
77 TraesCS3A01G198800 chr1A 90.909 187 17 0 6167 6353 250111538 250111724 1.100000e-62 252.0
78 TraesCS3A01G198800 chr2B 88.835 206 19 4 6167 6370 57652612 57652815 3.940000e-62 250.0
79 TraesCS3A01G198800 chr2B 75.952 420 62 23 5360 5750 331035160 331034751 5.250000e-41 180.0
80 TraesCS3A01G198800 chr4B 93.007 143 8 2 361 501 294107567 294107709 2.410000e-49 207.0
81 TraesCS3A01G198800 chr6A 92.308 143 8 3 360 500 459996284 459996143 4.030000e-47 200.0
82 TraesCS3A01G198800 chr6A 88.276 145 16 1 6399 6543 98430636 98430779 8.780000e-39 172.0
83 TraesCS3A01G198800 chr6A 96.429 56 1 1 6534 6588 141742470 141742525 2.530000e-14 91.6
84 TraesCS3A01G198800 chr6A 94.118 51 0 3 6035 6083 106896523 106896572 2.550000e-09 75.0
85 TraesCS3A01G198800 chr6D 82.775 209 27 1 6335 6543 72226151 72226350 1.890000e-40 178.0
86 TraesCS3A01G198800 chr6D 82.524 206 27 1 6338 6543 153191705 153191509 8.780000e-39 172.0
87 TraesCS3A01G198800 chr6D 73.333 480 91 21 4770 5242 139360374 139360823 6.890000e-30 143.0
88 TraesCS3A01G198800 chr6D 92.157 51 1 3 6035 6083 83970736 83970785 1.190000e-07 69.4
89 TraesCS3A01G198800 chr1D 82.609 207 26 3 6338 6543 194673589 194673786 2.440000e-39 174.0
90 TraesCS3A01G198800 chr1D 92.157 51 1 3 6035 6083 275767307 275767356 1.190000e-07 69.4
91 TraesCS3A01G198800 chr2A 74.764 424 65 26 5437 5829 617864408 617864820 1.140000e-32 152.0
92 TraesCS3A01G198800 chr7A 96.429 56 1 1 6534 6588 356547087 356547142 2.530000e-14 91.6
93 TraesCS3A01G198800 chrUn 92.157 51 1 3 6035 6083 45090676 45090725 1.190000e-07 69.4
94 TraesCS3A01G198800 chrUn 92.157 51 1 3 6035 6083 171040963 171041012 1.190000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G198800 chr3A 316668300 316674887 6587 True 12166.000000 12166 100.000000 1 6588 1 chr3A.!!$R2 6587
1 TraesCS3A01G198800 chr3D 200382017 200387897 5880 False 1234.085714 4527 93.527571 1 6543 7 chr3D.!!$F2 6542
2 TraesCS3A01G198800 chr3D 25280656 25281738 1082 False 628.000000 628 78.226000 4774 5829 1 chr3D.!!$F1 1055
3 TraesCS3A01G198800 chr3D 325413193 325413810 617 True 436.000000 436 80.000000 4954 5581 1 chr3D.!!$R3 627
4 TraesCS3A01G198800 chr3B 327861974 327869388 7414 False 1504.666667 3892 93.293500 202 6544 6 chr3B.!!$F3 6342
5 TraesCS3A01G198800 chr5A 666042537 666043601 1064 True 1038.000000 1038 84.729000 4774 5828 1 chr5A.!!$R2 1054
6 TraesCS3A01G198800 chr7D 32821377 32822434 1057 False 769.000000 769 80.648000 4774 5801 1 chr7D.!!$F1 1027
7 TraesCS3A01G198800 chr7D 319943583 319944639 1056 False 706.000000 706 79.656000 4774 5831 1 chr7D.!!$F4 1057
8 TraesCS3A01G198800 chr7D 482241526 482242547 1021 False 573.000000 573 77.664000 4777 5808 1 chr7D.!!$F5 1031
9 TraesCS3A01G198800 chr7D 596704930 596705474 544 False 333.000000 333 78.374000 5267 5831 1 chr7D.!!$F6 564
10 TraesCS3A01G198800 chr1B 149599337 149600410 1073 True 688.000000 688 79.227000 4777 5832 1 chr1B.!!$R1 1055
11 TraesCS3A01G198800 chr4D 307154066 307154853 787 True 678.000000 678 82.588000 5020 5829 1 chr4D.!!$R2 809
12 TraesCS3A01G198800 chr4D 478035551 478036106 555 False 381.000000 381 79.795000 5267 5831 1 chr4D.!!$F5 564
13 TraesCS3A01G198800 chr5D 543769294 543770030 736 False 619.000000 619 82.222000 4774 5523 1 chr5D.!!$F1 749
14 TraesCS3A01G198800 chr5D 95865349 95866354 1005 True 329.000000 329 73.789000 4827 5832 1 chr5D.!!$R1 1005
15 TraesCS3A01G198800 chr5B 127544719 127545495 776 False 590.000000 590 80.745000 4774 5564 1 chr5B.!!$F4 790
16 TraesCS3A01G198800 chr7B 229818009 229818724 715 True 560.000000 560 81.023000 4780 5515 1 chr7B.!!$R2 735
17 TraesCS3A01G198800 chr4A 255335701 255336727 1026 False 544.000000 544 77.260000 4774 5829 1 chr4A.!!$F2 1055
18 TraesCS3A01G198800 chr2D 131630336 131631262 926 False 508.000000 508 77.673000 4926 5827 1 chr2D.!!$F1 901
19 TraesCS3A01G198800 chr2D 492298640 492299701 1061 False 507.000000 507 76.247000 4774 5832 1 chr2D.!!$F2 1058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 2047 0.176449 TACTGCGACATGCTGATGCT 59.824 50.000 0.00 0.0 46.63 3.79 F
1632 2778 1.199327 GGAAGTAAAGTGCCCGCTTTC 59.801 52.381 9.82 3.7 39.22 2.62 F
2420 3725 1.107945 CTCCATGATGCCACATTGCA 58.892 50.000 0.00 0.0 46.94 4.08 F
2884 4190 1.375268 GCTGGTGCCAGTGACTCTC 60.375 63.158 18.32 0.0 45.24 3.20 F
4463 6057 0.686224 CCAGAAGCCCATTTTTGCCA 59.314 50.000 0.00 0.0 0.00 4.92 F
4669 6273 0.617935 TTGATTCCTCATGGACGGCA 59.382 50.000 0.00 0.0 43.06 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 3209 0.250858 TCCCAATATGATGCTGCCGG 60.251 55.000 0.00 0.0 0.00 6.13 R
3164 4725 0.764890 TTGACAGGAGAACCAGTGGG 59.235 55.000 15.21 0.0 36.05 4.61 R
4365 5958 2.435693 GGGGGACGAGTGGAGATGG 61.436 68.421 0.00 0.0 0.00 3.51 R
4585 6189 0.537188 ACGGAAGCAATGAGGACGAT 59.463 50.000 0.00 0.0 0.00 3.73 R
5366 7034 0.034616 GGCGATGATCTCCTTGAGGG 59.965 60.000 0.00 0.0 35.41 4.30 R
6140 7961 0.897621 TCATCAGTGTCGCCATCACT 59.102 50.000 0.00 0.0 45.43 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.093447 CCGAAACTGCTCCTTGATACCT 60.093 50.000 0.00 0.00 0.00 3.08
24 25 3.132289 CCGAAACTGCTCCTTGATACCTA 59.868 47.826 0.00 0.00 0.00 3.08
32 33 4.406003 TGCTCCTTGATACCTAGGAAACTC 59.594 45.833 17.98 6.73 42.31 3.01
42 43 3.510753 ACCTAGGAAACTCGAAGACCTTC 59.489 47.826 17.98 0.00 43.67 3.46
59 60 9.595357 GAAGACCTTCTTAAATTACGAAGTTTG 57.405 33.333 15.16 5.80 38.40 2.93
69 70 6.702716 AATTACGAAGTTTGGGTTGAAAGA 57.297 33.333 0.00 0.00 37.78 2.52
83 84 2.238521 TGAAAGAAGCAATGTGGGACC 58.761 47.619 0.00 0.00 0.00 4.46
122 123 9.661954 AATGAACCTTCTCTTATACCATAGAGA 57.338 33.333 0.00 0.00 43.77 3.10
134 135 9.675464 CTTATACCATAGAGAGAGGTAACCTAG 57.325 40.741 0.00 0.00 40.93 3.02
138 139 5.536916 CCATAGAGAGAGGTAACCTAGTTGG 59.463 48.000 0.00 0.00 42.93 3.77
153 154 5.942872 CCTAGTTGGTAGCATCAAAAGTTG 58.057 41.667 5.82 0.00 0.00 3.16
154 155 5.473504 CCTAGTTGGTAGCATCAAAAGTTGT 59.526 40.000 5.82 0.00 0.00 3.32
155 156 6.653320 CCTAGTTGGTAGCATCAAAAGTTGTA 59.347 38.462 5.82 0.00 0.00 2.41
156 157 6.952773 AGTTGGTAGCATCAAAAGTTGTAA 57.047 33.333 5.82 0.00 0.00 2.41
157 158 6.970484 AGTTGGTAGCATCAAAAGTTGTAAG 58.030 36.000 5.82 0.00 0.00 2.34
158 159 6.770785 AGTTGGTAGCATCAAAAGTTGTAAGA 59.229 34.615 5.82 0.00 0.00 2.10
159 160 6.554334 TGGTAGCATCAAAAGTTGTAAGAC 57.446 37.500 0.00 0.00 0.00 3.01
161 162 6.714810 TGGTAGCATCAAAAGTTGTAAGACAT 59.285 34.615 0.00 0.00 0.00 3.06
162 163 7.023575 GGTAGCATCAAAAGTTGTAAGACATG 58.976 38.462 0.00 0.00 0.00 3.21
163 164 6.882610 AGCATCAAAAGTTGTAAGACATGA 57.117 33.333 0.00 0.00 0.00 3.07
165 166 6.072286 AGCATCAAAAGTTGTAAGACATGAGG 60.072 38.462 0.00 0.00 0.00 3.86
166 167 6.294176 GCATCAAAAGTTGTAAGACATGAGGT 60.294 38.462 0.00 0.00 0.00 3.85
180 308 7.944729 AGACATGAGGTTGTGCTTTATTTAT 57.055 32.000 0.00 0.00 0.00 1.40
181 309 8.353423 AGACATGAGGTTGTGCTTTATTTATT 57.647 30.769 0.00 0.00 0.00 1.40
182 310 9.461312 AGACATGAGGTTGTGCTTTATTTATTA 57.539 29.630 0.00 0.00 0.00 0.98
183 311 9.722056 GACATGAGGTTGTGCTTTATTTATTAG 57.278 33.333 0.00 0.00 0.00 1.73
184 312 8.686334 ACATGAGGTTGTGCTTTATTTATTAGG 58.314 33.333 0.00 0.00 0.00 2.69
229 357 3.626930 TGGTACCTGGCAAAATACATCC 58.373 45.455 14.36 0.00 0.00 3.51
241 369 7.069702 TGGCAAAATACATCCAATATGTGTGAT 59.930 33.333 0.97 0.00 33.76 3.06
263 391 9.520515 GTGATTGTAATATAATGGTTGGGATCT 57.479 33.333 0.00 0.00 0.00 2.75
268 396 6.935240 AATATAATGGTTGGGATCTCGAGA 57.065 37.500 19.19 19.19 0.00 4.04
304 432 5.048643 GTGAGATACCAGTATGCATAGTCGT 60.049 44.000 14.98 14.98 31.97 4.34
319 447 1.002990 TCGTCGTGTGCTCCTAGGA 60.003 57.895 11.98 11.98 0.00 2.94
320 448 1.025113 TCGTCGTGTGCTCCTAGGAG 61.025 60.000 31.35 31.35 44.56 3.69
349 497 2.291741 GAGCATATGCAGTTAAGCCACC 59.708 50.000 28.62 0.00 45.16 4.61
352 500 3.489738 GCATATGCAGTTAAGCCACCTTG 60.490 47.826 22.84 0.00 41.59 3.61
366 514 3.689649 GCCACCTTGTCGTCTCAATAAAT 59.310 43.478 0.00 0.00 0.00 1.40
367 515 4.156008 GCCACCTTGTCGTCTCAATAAATT 59.844 41.667 0.00 0.00 0.00 1.82
368 516 5.353123 GCCACCTTGTCGTCTCAATAAATTA 59.647 40.000 0.00 0.00 0.00 1.40
369 517 6.674760 GCCACCTTGTCGTCTCAATAAATTAC 60.675 42.308 0.00 0.00 0.00 1.89
370 518 6.594159 CCACCTTGTCGTCTCAATAAATTACT 59.406 38.462 0.00 0.00 0.00 2.24
371 519 7.201530 CCACCTTGTCGTCTCAATAAATTACTC 60.202 40.741 0.00 0.00 0.00 2.59
372 520 6.530534 ACCTTGTCGTCTCAATAAATTACTCG 59.469 38.462 0.00 0.00 0.00 4.18
373 521 5.944049 TGTCGTCTCAATAAATTACTCGC 57.056 39.130 0.00 0.00 0.00 5.03
374 522 5.647589 TGTCGTCTCAATAAATTACTCGCT 58.352 37.500 0.00 0.00 0.00 4.93
375 523 5.742453 TGTCGTCTCAATAAATTACTCGCTC 59.258 40.000 0.00 0.00 0.00 5.03
376 524 5.972382 GTCGTCTCAATAAATTACTCGCTCT 59.028 40.000 0.00 0.00 0.00 4.09
377 525 5.971792 TCGTCTCAATAAATTACTCGCTCTG 59.028 40.000 0.00 0.00 0.00 3.35
378 526 5.744345 CGTCTCAATAAATTACTCGCTCTGT 59.256 40.000 0.00 0.00 0.00 3.41
379 527 6.253727 CGTCTCAATAAATTACTCGCTCTGTT 59.746 38.462 0.00 0.00 0.00 3.16
380 528 7.513814 CGTCTCAATAAATTACTCGCTCTGTTC 60.514 40.741 0.00 0.00 0.00 3.18
381 529 6.757010 TCTCAATAAATTACTCGCTCTGTTCC 59.243 38.462 0.00 0.00 0.00 3.62
382 530 5.518847 TCAATAAATTACTCGCTCTGTTCCG 59.481 40.000 0.00 0.00 0.00 4.30
383 531 3.587797 AAATTACTCGCTCTGTTCCGA 57.412 42.857 0.00 0.00 0.00 4.55
384 532 3.587797 AATTACTCGCTCTGTTCCGAA 57.412 42.857 0.00 0.00 32.56 4.30
385 533 3.802948 ATTACTCGCTCTGTTCCGAAT 57.197 42.857 0.00 0.00 32.56 3.34
386 534 3.587797 TTACTCGCTCTGTTCCGAATT 57.412 42.857 0.00 0.00 32.56 2.17
387 535 4.707030 TTACTCGCTCTGTTCCGAATTA 57.293 40.909 0.00 0.00 32.56 1.40
388 536 2.877335 ACTCGCTCTGTTCCGAATTAC 58.123 47.619 0.00 0.00 32.56 1.89
389 537 2.492484 ACTCGCTCTGTTCCGAATTACT 59.508 45.455 0.00 0.00 32.56 2.24
390 538 3.056749 ACTCGCTCTGTTCCGAATTACTT 60.057 43.478 0.00 0.00 32.56 2.24
391 539 3.250744 TCGCTCTGTTCCGAATTACTTG 58.749 45.455 0.00 0.00 0.00 3.16
392 540 2.993899 CGCTCTGTTCCGAATTACTTGT 59.006 45.455 0.00 0.00 0.00 3.16
393 541 3.060895 CGCTCTGTTCCGAATTACTTGTC 59.939 47.826 0.00 0.00 0.00 3.18
394 542 4.246458 GCTCTGTTCCGAATTACTTGTCT 58.754 43.478 0.00 0.00 0.00 3.41
395 543 4.691216 GCTCTGTTCCGAATTACTTGTCTT 59.309 41.667 0.00 0.00 0.00 3.01
396 544 5.867716 GCTCTGTTCCGAATTACTTGTCTTA 59.132 40.000 0.00 0.00 0.00 2.10
397 545 6.035112 GCTCTGTTCCGAATTACTTGTCTTAG 59.965 42.308 0.00 0.00 0.00 2.18
398 546 7.223260 TCTGTTCCGAATTACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
399 547 7.837863 TCTGTTCCGAATTACTTGTCTTAGAT 58.162 34.615 0.00 0.00 0.00 1.98
400 548 8.311836 TCTGTTCCGAATTACTTGTCTTAGATT 58.688 33.333 0.00 0.00 0.00 2.40
401 549 8.842358 TGTTCCGAATTACTTGTCTTAGATTT 57.158 30.769 0.00 0.00 0.00 2.17
402 550 8.717821 TGTTCCGAATTACTTGTCTTAGATTTG 58.282 33.333 0.00 0.00 0.00 2.32
403 551 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
404 552 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
405 553 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
406 554 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
412 560 8.068892 ACTTGTCTTAGATTTGTCTAGGTAGG 57.931 38.462 0.00 0.00 0.00 3.18
413 561 7.894364 ACTTGTCTTAGATTTGTCTAGGTAGGA 59.106 37.037 0.00 0.00 0.00 2.94
414 562 7.883391 TGTCTTAGATTTGTCTAGGTAGGAG 57.117 40.000 0.00 0.00 0.00 3.69
415 563 6.834451 TGTCTTAGATTTGTCTAGGTAGGAGG 59.166 42.308 0.00 0.00 0.00 4.30
416 564 6.834969 GTCTTAGATTTGTCTAGGTAGGAGGT 59.165 42.308 0.00 0.00 0.00 3.85
417 565 7.997803 GTCTTAGATTTGTCTAGGTAGGAGGTA 59.002 40.741 0.00 0.00 0.00 3.08
418 566 8.734763 TCTTAGATTTGTCTAGGTAGGAGGTAT 58.265 37.037 0.00 0.00 0.00 2.73
419 567 9.369672 CTTAGATTTGTCTAGGTAGGAGGTATT 57.630 37.037 0.00 0.00 0.00 1.89
420 568 9.725206 TTAGATTTGTCTAGGTAGGAGGTATTT 57.275 33.333 0.00 0.00 0.00 1.40
422 570 9.369672 AGATTTGTCTAGGTAGGAGGTATTTAG 57.630 37.037 0.00 0.00 0.00 1.85
423 571 6.973460 TTGTCTAGGTAGGAGGTATTTAGC 57.027 41.667 0.00 0.00 0.00 3.09
424 572 6.022107 TGTCTAGGTAGGAGGTATTTAGCA 57.978 41.667 0.00 0.00 0.00 3.49
425 573 5.832060 TGTCTAGGTAGGAGGTATTTAGCAC 59.168 44.000 0.00 0.00 0.00 4.40
426 574 6.069994 GTCTAGGTAGGAGGTATTTAGCACT 58.930 44.000 0.00 0.00 0.00 4.40
427 575 7.147248 TGTCTAGGTAGGAGGTATTTAGCACTA 60.147 40.741 0.00 0.00 0.00 2.74
428 576 7.723172 GTCTAGGTAGGAGGTATTTAGCACTAA 59.277 40.741 0.00 0.00 0.00 2.24
429 577 8.284435 TCTAGGTAGGAGGTATTTAGCACTAAA 58.716 37.037 5.37 5.37 39.12 1.85
430 578 7.744678 AGGTAGGAGGTATTTAGCACTAAAA 57.255 36.000 6.92 0.00 38.38 1.52
431 579 8.333226 AGGTAGGAGGTATTTAGCACTAAAAT 57.667 34.615 6.92 0.00 38.38 1.82
432 580 8.211629 AGGTAGGAGGTATTTAGCACTAAAATG 58.788 37.037 6.92 0.00 38.38 2.32
433 581 8.208903 GGTAGGAGGTATTTAGCACTAAAATGA 58.791 37.037 6.92 0.00 38.38 2.57
434 582 9.262358 GTAGGAGGTATTTAGCACTAAAATGAG 57.738 37.037 6.92 0.00 38.38 2.90
435 583 7.862675 AGGAGGTATTTAGCACTAAAATGAGT 58.137 34.615 6.92 0.00 38.38 3.41
436 584 7.988028 AGGAGGTATTTAGCACTAAAATGAGTC 59.012 37.037 6.92 2.06 38.38 3.36
437 585 7.988028 GGAGGTATTTAGCACTAAAATGAGTCT 59.012 37.037 6.92 0.95 38.38 3.24
447 595 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
448 596 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
449 597 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
450 598 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
466 614 9.698309 ATACATCCGTATCTAGACAAATTCAAG 57.302 33.333 0.00 0.00 32.66 3.02
467 615 7.782049 ACATCCGTATCTAGACAAATTCAAGA 58.218 34.615 0.00 0.00 0.00 3.02
468 616 7.707035 ACATCCGTATCTAGACAAATTCAAGAC 59.293 37.037 0.00 0.00 0.00 3.01
469 617 7.165460 TCCGTATCTAGACAAATTCAAGACA 57.835 36.000 0.00 0.00 0.00 3.41
470 618 7.608153 TCCGTATCTAGACAAATTCAAGACAA 58.392 34.615 0.00 0.00 0.00 3.18
471 619 7.759886 TCCGTATCTAGACAAATTCAAGACAAG 59.240 37.037 0.00 0.00 0.00 3.16
472 620 7.545965 CCGTATCTAGACAAATTCAAGACAAGT 59.454 37.037 0.00 0.00 0.00 3.16
473 621 9.569167 CGTATCTAGACAAATTCAAGACAAGTA 57.431 33.333 0.00 0.00 0.00 2.24
478 626 9.746711 CTAGACAAATTCAAGACAAGTAATTCG 57.253 33.333 0.00 0.00 0.00 3.34
479 627 7.584987 AGACAAATTCAAGACAAGTAATTCGG 58.415 34.615 0.00 0.00 0.00 4.30
480 628 7.444183 AGACAAATTCAAGACAAGTAATTCGGA 59.556 33.333 0.00 0.00 0.00 4.55
481 629 7.936584 ACAAATTCAAGACAAGTAATTCGGAA 58.063 30.769 0.00 0.00 0.00 4.30
482 630 7.860872 ACAAATTCAAGACAAGTAATTCGGAAC 59.139 33.333 0.00 0.00 0.00 3.62
537 685 7.277760 GCATGTGTCCTTTATACCAATTTTTCC 59.722 37.037 0.00 0.00 0.00 3.13
553 701 3.814504 TTTCCTCTCTCCCATTTGCTT 57.185 42.857 0.00 0.00 0.00 3.91
555 703 1.208052 TCCTCTCTCCCATTTGCTTCG 59.792 52.381 0.00 0.00 0.00 3.79
592 741 7.182361 ACTGAGTGCAAATATTATGTGATCG 57.818 36.000 0.00 0.00 0.00 3.69
613 762 4.161565 TCGGTGATATGCTATATTCCCCAC 59.838 45.833 0.00 0.00 0.00 4.61
683 833 1.521681 CCCTCCGTCTCGAATTGCC 60.522 63.158 0.00 0.00 0.00 4.52
716 1853 7.767261 ACAGTCTATGAAGCAGTAGTTTCTAG 58.233 38.462 0.00 0.00 36.13 2.43
738 1884 4.976925 CCATAGGAGCTGCGGCCG 62.977 72.222 24.05 24.05 39.73 6.13
739 1885 3.916544 CATAGGAGCTGCGGCCGA 61.917 66.667 33.48 13.59 39.73 5.54
740 1886 3.154473 ATAGGAGCTGCGGCCGAA 61.154 61.111 33.48 20.72 39.73 4.30
741 1887 2.731571 ATAGGAGCTGCGGCCGAAA 61.732 57.895 33.48 15.82 39.73 3.46
742 1888 2.252072 ATAGGAGCTGCGGCCGAAAA 62.252 55.000 33.48 12.84 39.73 2.29
743 1889 2.852495 TAGGAGCTGCGGCCGAAAAG 62.852 60.000 33.48 23.08 39.73 2.27
744 1890 3.050275 GAGCTGCGGCCGAAAAGT 61.050 61.111 33.48 8.47 39.73 2.66
745 1891 3.314388 GAGCTGCGGCCGAAAAGTG 62.314 63.158 33.48 7.73 39.73 3.16
786 1932 0.721718 CATCCGTTTTCTCGCCAGTC 59.278 55.000 0.00 0.00 0.00 3.51
898 2044 0.528466 CCGTACTGCGACATGCTGAT 60.528 55.000 0.00 0.00 46.63 2.90
901 2047 0.176449 TACTGCGACATGCTGATGCT 59.824 50.000 0.00 0.00 46.63 3.79
1632 2778 1.199327 GGAAGTAAAGTGCCCGCTTTC 59.801 52.381 9.82 3.70 39.22 2.62
1805 2951 9.962809 AGTTACTTGTCTAGACTCTTAGTGTAT 57.037 33.333 23.01 8.73 0.00 2.29
1896 3201 9.095065 ACGTTTGACTACCAATATAGAACAATC 57.905 33.333 0.00 0.00 34.23 2.67
1904 3209 7.391148 ACCAATATAGAACAATCACCAACAC 57.609 36.000 0.00 0.00 0.00 3.32
1916 3221 2.048023 CCAACACCGGCAGCATCAT 61.048 57.895 0.00 0.00 0.00 2.45
2082 3387 4.788075 TCAGAGGGAATCCAGTTTAATCCA 59.212 41.667 0.09 0.00 34.83 3.41
2371 3676 7.643569 TTGGAAATGATAGATTTGCTTGCTA 57.356 32.000 0.00 0.00 31.81 3.49
2420 3725 1.107945 CTCCATGATGCCACATTGCA 58.892 50.000 0.00 0.00 46.94 4.08
2884 4190 1.375268 GCTGGTGCCAGTGACTCTC 60.375 63.158 18.32 0.00 45.24 3.20
3164 4725 2.817258 TGGTAAATGTACACAGGCTTGC 59.183 45.455 0.00 0.00 31.21 4.01
3844 5437 8.519799 AGAAATCAACTAAAAGTGGAAACTGA 57.480 30.769 0.00 0.00 30.75 3.41
4295 5888 7.911651 TGTCTATTTTCTCTGAAGGAAGTCAT 58.088 34.615 0.00 0.00 0.00 3.06
4314 5907 6.974965 AGTCATCATCAAGAAAGTTTGTTCC 58.025 36.000 0.00 0.00 0.00 3.62
4320 5913 7.158697 TCATCAAGAAAGTTTGTTCCGAGATA 58.841 34.615 0.00 0.00 0.00 1.98
4324 5917 7.281324 TCAAGAAAGTTTGTTCCGAGATACAAA 59.719 33.333 0.00 0.00 40.76 2.83
4378 5971 4.023980 TCAATTAGACCATCTCCACTCGT 58.976 43.478 0.00 0.00 0.00 4.18
4417 6010 1.525442 CCCCTTTTCTATCGCCGGT 59.475 57.895 1.90 0.00 0.00 5.28
4463 6057 0.686224 CCAGAAGCCCATTTTTGCCA 59.314 50.000 0.00 0.00 0.00 4.92
4596 6200 0.811616 GCGCCTTCATCGTCCTCATT 60.812 55.000 0.00 0.00 0.00 2.57
4602 6206 2.315925 TCATCGTCCTCATTGCTTCC 57.684 50.000 0.00 0.00 0.00 3.46
4661 6265 3.203710 TCAGCCTTCCATTGATTCCTCAT 59.796 43.478 0.00 0.00 0.00 2.90
4664 6268 3.689280 GCCTTCCATTGATTCCTCATGGA 60.689 47.826 0.00 5.58 41.36 3.41
4669 6273 0.617935 TTGATTCCTCATGGACGGCA 59.382 50.000 0.00 0.00 43.06 5.69
4670 6274 0.839277 TGATTCCTCATGGACGGCAT 59.161 50.000 0.00 0.00 43.06 4.40
4671 6275 1.233019 GATTCCTCATGGACGGCATG 58.767 55.000 0.00 0.00 43.06 4.06
4683 6287 3.142838 GGCATGGTGAAGGCGCAT 61.143 61.111 10.83 0.00 0.00 4.73
5010 6619 2.439883 GGAGTACCCGACGCCTCT 60.440 66.667 0.00 0.00 44.29 3.69
5367 7035 2.502080 CGAGGATATCGTCGCGCC 60.502 66.667 28.54 0.70 46.62 6.53
5368 7036 2.126424 GAGGATATCGTCGCGCCC 60.126 66.667 9.51 0.00 0.00 6.13
5369 7037 2.597805 AGGATATCGTCGCGCCCT 60.598 61.111 0.00 0.00 0.00 5.19
5370 7038 2.126424 GGATATCGTCGCGCCCTC 60.126 66.667 0.00 0.00 0.00 4.30
5371 7039 2.643272 GATATCGTCGCGCCCTCA 59.357 61.111 0.00 0.00 0.00 3.86
5372 7040 1.007734 GATATCGTCGCGCCCTCAA 60.008 57.895 0.00 0.00 0.00 3.02
5373 7041 1.004277 GATATCGTCGCGCCCTCAAG 61.004 60.000 0.00 0.00 0.00 3.02
5374 7042 2.421877 ATATCGTCGCGCCCTCAAGG 62.422 60.000 0.00 0.00 39.47 3.61
5377 7045 3.760035 GTCGCGCCCTCAAGGAGA 61.760 66.667 0.00 0.00 37.72 3.71
5378 7046 2.759973 TCGCGCCCTCAAGGAGAT 60.760 61.111 0.00 0.00 37.72 2.75
5379 7047 2.279784 CGCGCCCTCAAGGAGATC 60.280 66.667 0.00 0.00 37.72 2.75
5380 7048 2.903357 GCGCCCTCAAGGAGATCA 59.097 61.111 0.00 0.00 37.72 2.92
5381 7049 1.449353 GCGCCCTCAAGGAGATCAT 59.551 57.895 0.00 0.00 37.72 2.45
5423 7091 4.124351 GGGCGTCGTCGTCATCCA 62.124 66.667 9.16 0.00 44.04 3.41
5488 7171 4.988716 ACGACGACCCAGGGCAGA 62.989 66.667 4.91 0.00 0.00 4.26
5511 7215 4.388499 AACAAGGACGGCGGCGAT 62.388 61.111 38.93 21.91 0.00 4.58
5670 7454 6.526566 AATATTAGCCGAATTCGTGTCTTC 57.473 37.500 25.10 7.94 37.74 2.87
5714 7502 7.599630 ATTTTAGTTCAAATAACGGCGTCTA 57.400 32.000 15.17 8.71 0.00 2.59
5833 7641 0.250252 GGCTGGAGATGCTCTTAGCC 60.250 60.000 19.43 19.43 45.34 3.93
5834 7642 0.250252 GCTGGAGATGCTCTTAGCCC 60.250 60.000 10.80 0.00 41.51 5.19
5840 7648 3.449377 GGAGATGCTCTTAGCCCTATACC 59.551 52.174 0.00 0.00 41.51 2.73
6017 7832 4.094739 GTGCATTTATGTGGGATTTTTGGC 59.905 41.667 0.00 0.00 0.00 4.52
6026 7841 3.192633 GTGGGATTTTTGGCGAGTTATGT 59.807 43.478 0.00 0.00 0.00 2.29
6148 7969 3.000041 TCGTGTATTCACAAGTGATGGC 59.000 45.455 3.43 0.00 44.02 4.40
6178 8017 5.400537 TGATGATTATCCAAAAGGGCATCCT 60.401 40.000 0.00 0.00 37.48 3.24
6245 8084 2.946990 CCACTTTGGGTCTTTTGTACGT 59.053 45.455 0.00 0.00 32.67 3.57
6453 8292 4.077108 TCTTTGCAGATGATGAAGTGCTT 58.923 39.130 0.00 0.00 36.84 3.91
6531 8370 5.622770 TGGAATCGAAAGGTTTTAAGCTC 57.377 39.130 0.00 0.00 35.34 4.09
6544 8383 8.392372 AGGTTTTAAGCTCAGTAAAACTAAGG 57.608 34.615 22.39 0.00 44.95 2.69
6545 8384 7.040617 AGGTTTTAAGCTCAGTAAAACTAAGGC 60.041 37.037 22.39 11.71 44.95 4.35
6546 8385 6.812879 TTTAAGCTCAGTAAAACTAAGGCC 57.187 37.500 0.00 0.00 0.00 5.19
6547 8386 4.642466 AAGCTCAGTAAAACTAAGGCCT 57.358 40.909 0.00 0.00 0.00 5.19
6548 8387 4.209307 AGCTCAGTAAAACTAAGGCCTC 57.791 45.455 5.23 0.00 0.00 4.70
6549 8388 3.055021 AGCTCAGTAAAACTAAGGCCTCC 60.055 47.826 5.23 0.00 0.00 4.30
6550 8389 3.055021 GCTCAGTAAAACTAAGGCCTCCT 60.055 47.826 5.23 0.00 33.87 3.69
6551 8390 4.565861 GCTCAGTAAAACTAAGGCCTCCTT 60.566 45.833 5.23 3.40 46.63 3.36
6552 8391 5.561679 CTCAGTAAAACTAAGGCCTCCTTT 58.438 41.667 5.23 6.14 41.69 3.11
6553 8392 5.313712 TCAGTAAAACTAAGGCCTCCTTTG 58.686 41.667 5.23 4.60 41.69 2.77
6554 8393 4.459337 CAGTAAAACTAAGGCCTCCTTTGG 59.541 45.833 5.23 0.00 41.69 3.28
6555 8394 3.612795 AAAACTAAGGCCTCCTTTGGT 57.387 42.857 5.23 0.00 41.69 3.67
6556 8395 3.612795 AAACTAAGGCCTCCTTTGGTT 57.387 42.857 5.23 1.01 41.69 3.67
6557 8396 3.612795 AACTAAGGCCTCCTTTGGTTT 57.387 42.857 5.23 0.00 41.69 3.27
6558 8397 2.876581 ACTAAGGCCTCCTTTGGTTTG 58.123 47.619 5.23 0.00 41.69 2.93
6559 8398 2.177016 ACTAAGGCCTCCTTTGGTTTGT 59.823 45.455 5.23 0.00 41.69 2.83
6560 8399 3.396611 ACTAAGGCCTCCTTTGGTTTGTA 59.603 43.478 5.23 0.00 41.69 2.41
6561 8400 2.586648 AGGCCTCCTTTGGTTTGTAG 57.413 50.000 0.00 0.00 0.00 2.74
6562 8401 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
6563 8402 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
6564 8403 2.291605 GGCCTCCTTTGGTTTGTAGGAT 60.292 50.000 0.00 0.00 37.44 3.24
6565 8404 3.431415 GCCTCCTTTGGTTTGTAGGATT 58.569 45.455 0.00 0.00 37.44 3.01
6566 8405 3.832490 GCCTCCTTTGGTTTGTAGGATTT 59.168 43.478 0.00 0.00 37.44 2.17
6567 8406 4.283467 GCCTCCTTTGGTTTGTAGGATTTT 59.717 41.667 0.00 0.00 37.44 1.82
6568 8407 5.221641 GCCTCCTTTGGTTTGTAGGATTTTT 60.222 40.000 0.00 0.00 37.44 1.94
6569 8408 6.223120 CCTCCTTTGGTTTGTAGGATTTTTG 58.777 40.000 0.00 0.00 37.44 2.44
6570 8409 6.183360 CCTCCTTTGGTTTGTAGGATTTTTGT 60.183 38.462 0.00 0.00 37.44 2.83
6571 8410 7.014808 CCTCCTTTGGTTTGTAGGATTTTTGTA 59.985 37.037 0.00 0.00 37.44 2.41
6572 8411 7.947282 TCCTTTGGTTTGTAGGATTTTTGTAG 58.053 34.615 0.00 0.00 33.23 2.74
6573 8412 7.014808 TCCTTTGGTTTGTAGGATTTTTGTAGG 59.985 37.037 0.00 0.00 33.23 3.18
6574 8413 7.014808 CCTTTGGTTTGTAGGATTTTTGTAGGA 59.985 37.037 0.00 0.00 0.00 2.94
6575 8414 7.899648 TTGGTTTGTAGGATTTTTGTAGGAA 57.100 32.000 0.00 0.00 0.00 3.36
6576 8415 8.485578 TTGGTTTGTAGGATTTTTGTAGGAAT 57.514 30.769 0.00 0.00 0.00 3.01
6577 8416 8.485578 TGGTTTGTAGGATTTTTGTAGGAATT 57.514 30.769 0.00 0.00 0.00 2.17
6578 8417 8.581578 TGGTTTGTAGGATTTTTGTAGGAATTC 58.418 33.333 0.00 0.00 0.00 2.17
6579 8418 8.803235 GGTTTGTAGGATTTTTGTAGGAATTCT 58.197 33.333 5.23 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.906157 TTAAGAAGGTCTTCGAGTTTCCTA 57.094 37.500 5.22 0.00 43.97 2.94
24 25 5.803237 TTAAGAAGGTCTTCGAGTTTCCT 57.197 39.130 5.22 0.00 43.97 3.36
32 33 7.578169 ACTTCGTAATTTAAGAAGGTCTTCG 57.422 36.000 25.65 9.15 44.87 3.79
42 43 8.859517 TTTCAACCCAAACTTCGTAATTTAAG 57.140 30.769 0.00 0.00 0.00 1.85
59 60 2.289010 CCCACATTGCTTCTTTCAACCC 60.289 50.000 0.00 0.00 0.00 4.11
69 70 2.607499 TCAAATGGTCCCACATTGCTT 58.393 42.857 8.21 0.00 40.71 3.91
83 84 6.752168 AGAAGGTTCATTCAGGTTTCAAATG 58.248 36.000 0.38 0.00 0.00 2.32
134 135 6.856426 GTCTTACAACTTTTGATGCTACCAAC 59.144 38.462 0.00 0.00 0.00 3.77
138 139 7.806690 TCATGTCTTACAACTTTTGATGCTAC 58.193 34.615 0.00 0.00 0.00 3.58
139 140 7.119699 CCTCATGTCTTACAACTTTTGATGCTA 59.880 37.037 0.00 0.00 0.00 3.49
141 142 6.088824 CCTCATGTCTTACAACTTTTGATGC 58.911 40.000 0.00 0.00 0.00 3.91
142 143 7.206981 ACCTCATGTCTTACAACTTTTGATG 57.793 36.000 0.00 0.00 0.00 3.07
143 144 7.285401 ACAACCTCATGTCTTACAACTTTTGAT 59.715 33.333 0.00 0.00 0.00 2.57
144 145 6.601613 ACAACCTCATGTCTTACAACTTTTGA 59.398 34.615 0.00 0.00 0.00 2.69
145 146 6.692681 CACAACCTCATGTCTTACAACTTTTG 59.307 38.462 0.00 0.00 0.00 2.44
146 147 6.680378 GCACAACCTCATGTCTTACAACTTTT 60.680 38.462 0.00 0.00 0.00 2.27
147 148 5.221048 GCACAACCTCATGTCTTACAACTTT 60.221 40.000 0.00 0.00 0.00 2.66
148 149 4.275936 GCACAACCTCATGTCTTACAACTT 59.724 41.667 0.00 0.00 0.00 2.66
149 150 3.815401 GCACAACCTCATGTCTTACAACT 59.185 43.478 0.00 0.00 0.00 3.16
150 151 3.815401 AGCACAACCTCATGTCTTACAAC 59.185 43.478 0.00 0.00 0.00 3.32
152 153 3.769739 AGCACAACCTCATGTCTTACA 57.230 42.857 0.00 0.00 0.00 2.41
153 154 6.743575 ATAAAGCACAACCTCATGTCTTAC 57.256 37.500 0.00 0.00 0.00 2.34
154 155 7.759489 AAATAAAGCACAACCTCATGTCTTA 57.241 32.000 0.00 0.00 0.00 2.10
155 156 6.655078 AAATAAAGCACAACCTCATGTCTT 57.345 33.333 0.00 0.00 0.00 3.01
156 157 7.944729 ATAAATAAAGCACAACCTCATGTCT 57.055 32.000 0.00 0.00 0.00 3.41
157 158 9.722056 CTAATAAATAAAGCACAACCTCATGTC 57.278 33.333 0.00 0.00 0.00 3.06
158 159 8.686334 CCTAATAAATAAAGCACAACCTCATGT 58.314 33.333 0.00 0.00 0.00 3.21
159 160 8.686334 ACCTAATAAATAAAGCACAACCTCATG 58.314 33.333 0.00 0.00 0.00 3.07
161 162 9.742144 TTACCTAATAAATAAAGCACAACCTCA 57.258 29.630 0.00 0.00 0.00 3.86
190 318 6.543100 AGGTACCAACAGTTTTCGTATCAAAA 59.457 34.615 15.94 0.00 0.00 2.44
200 328 2.445682 TGCCAGGTACCAACAGTTTT 57.554 45.000 15.94 0.00 0.00 2.43
241 369 7.969004 TCGAGATCCCAACCATTATATTACAA 58.031 34.615 0.00 0.00 0.00 2.41
263 391 3.260632 TCTCACCCATTCAATTGTCTCGA 59.739 43.478 5.13 0.00 0.00 4.04
304 432 2.730934 ATACTCCTAGGAGCACACGA 57.269 50.000 34.48 15.66 45.54 4.35
319 447 8.778358 GCTTAACTGCATATGCTCTAAAATACT 58.222 33.333 27.13 4.24 42.66 2.12
320 448 8.017946 GGCTTAACTGCATATGCTCTAAAATAC 58.982 37.037 27.13 9.96 42.66 1.89
349 497 6.253727 AGCGAGTAATTTATTGAGACGACAAG 59.746 38.462 0.00 0.00 33.22 3.16
352 500 5.972382 AGAGCGAGTAATTTATTGAGACGAC 59.028 40.000 0.00 0.00 0.00 4.34
366 514 3.587797 AATTCGGAACAGAGCGAGTAA 57.412 42.857 0.00 0.00 0.00 2.24
367 515 3.693085 AGTAATTCGGAACAGAGCGAGTA 59.307 43.478 0.00 0.00 0.00 2.59
368 516 2.492484 AGTAATTCGGAACAGAGCGAGT 59.508 45.455 0.00 0.00 0.00 4.18
369 517 3.152261 AGTAATTCGGAACAGAGCGAG 57.848 47.619 0.00 0.00 0.00 5.03
370 518 3.250744 CAAGTAATTCGGAACAGAGCGA 58.749 45.455 0.00 0.00 0.00 4.93
371 519 2.993899 ACAAGTAATTCGGAACAGAGCG 59.006 45.455 0.00 0.00 0.00 5.03
372 520 4.246458 AGACAAGTAATTCGGAACAGAGC 58.754 43.478 0.00 0.00 0.00 4.09
373 521 7.313646 TCTAAGACAAGTAATTCGGAACAGAG 58.686 38.462 0.00 0.00 0.00 3.35
374 522 7.223260 TCTAAGACAAGTAATTCGGAACAGA 57.777 36.000 0.00 0.00 0.00 3.41
375 523 8.480643 AATCTAAGACAAGTAATTCGGAACAG 57.519 34.615 0.00 0.00 0.00 3.16
376 524 8.717821 CAAATCTAAGACAAGTAATTCGGAACA 58.282 33.333 0.00 0.00 0.00 3.18
377 525 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
378 526 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
379 527 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
380 528 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
386 534 9.186837 CCTACCTAGACAAATCTAAGACAAGTA 57.813 37.037 0.00 0.00 36.98 2.24
387 535 7.894364 TCCTACCTAGACAAATCTAAGACAAGT 59.106 37.037 0.00 0.00 36.98 3.16
388 536 8.294954 TCCTACCTAGACAAATCTAAGACAAG 57.705 38.462 0.00 0.00 36.98 3.16
389 537 7.342284 CCTCCTACCTAGACAAATCTAAGACAA 59.658 40.741 0.00 0.00 36.98 3.18
390 538 6.834451 CCTCCTACCTAGACAAATCTAAGACA 59.166 42.308 0.00 0.00 36.98 3.41
391 539 6.834969 ACCTCCTACCTAGACAAATCTAAGAC 59.165 42.308 0.00 0.00 36.98 3.01
392 540 6.982899 ACCTCCTACCTAGACAAATCTAAGA 58.017 40.000 0.00 0.00 36.98 2.10
393 541 8.943594 ATACCTCCTACCTAGACAAATCTAAG 57.056 38.462 0.00 0.00 36.98 2.18
394 542 9.725206 AAATACCTCCTACCTAGACAAATCTAA 57.275 33.333 0.00 0.00 36.98 2.10
396 544 9.369672 CTAAATACCTCCTACCTAGACAAATCT 57.630 37.037 0.00 0.00 39.15 2.40
397 545 8.089597 GCTAAATACCTCCTACCTAGACAAATC 58.910 40.741 0.00 0.00 0.00 2.17
398 546 7.567622 TGCTAAATACCTCCTACCTAGACAAAT 59.432 37.037 0.00 0.00 0.00 2.32
399 547 6.899075 TGCTAAATACCTCCTACCTAGACAAA 59.101 38.462 0.00 0.00 0.00 2.83
400 548 6.323225 GTGCTAAATACCTCCTACCTAGACAA 59.677 42.308 0.00 0.00 0.00 3.18
401 549 5.832060 GTGCTAAATACCTCCTACCTAGACA 59.168 44.000 0.00 0.00 0.00 3.41
402 550 6.069994 AGTGCTAAATACCTCCTACCTAGAC 58.930 44.000 0.00 0.00 0.00 2.59
403 551 6.277064 AGTGCTAAATACCTCCTACCTAGA 57.723 41.667 0.00 0.00 0.00 2.43
404 552 8.474710 TTTAGTGCTAAATACCTCCTACCTAG 57.525 38.462 0.68 0.00 30.78 3.02
405 553 8.843308 TTTTAGTGCTAAATACCTCCTACCTA 57.157 34.615 5.37 0.00 35.27 3.08
406 554 7.744678 TTTTAGTGCTAAATACCTCCTACCT 57.255 36.000 5.37 0.00 35.27 3.08
407 555 8.208903 TCATTTTAGTGCTAAATACCTCCTACC 58.791 37.037 5.37 0.00 35.27 3.18
408 556 9.262358 CTCATTTTAGTGCTAAATACCTCCTAC 57.738 37.037 5.37 0.00 35.27 3.18
409 557 8.989131 ACTCATTTTAGTGCTAAATACCTCCTA 58.011 33.333 5.37 0.00 35.27 2.94
410 558 7.862675 ACTCATTTTAGTGCTAAATACCTCCT 58.137 34.615 5.37 0.00 35.27 3.69
411 559 7.988028 AGACTCATTTTAGTGCTAAATACCTCC 59.012 37.037 5.37 0.00 35.27 4.30
412 560 8.950208 AGACTCATTTTAGTGCTAAATACCTC 57.050 34.615 5.37 0.00 35.27 3.85
421 569 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
422 570 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
423 571 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
424 572 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
440 588 9.698309 CTTGAATTTGTCTAGATACGGATGTAT 57.302 33.333 0.00 0.00 43.97 2.29
441 589 8.909923 TCTTGAATTTGTCTAGATACGGATGTA 58.090 33.333 0.00 0.00 33.79 2.29
442 590 7.707035 GTCTTGAATTTGTCTAGATACGGATGT 59.293 37.037 0.00 0.00 39.77 3.06
443 591 7.706607 TGTCTTGAATTTGTCTAGATACGGATG 59.293 37.037 0.00 0.00 39.77 3.51
444 592 7.782049 TGTCTTGAATTTGTCTAGATACGGAT 58.218 34.615 0.00 0.00 39.77 4.18
445 593 7.165460 TGTCTTGAATTTGTCTAGATACGGA 57.835 36.000 0.00 0.00 39.77 4.69
446 594 7.545965 ACTTGTCTTGAATTTGTCTAGATACGG 59.454 37.037 0.00 0.00 39.77 4.02
447 595 8.467402 ACTTGTCTTGAATTTGTCTAGATACG 57.533 34.615 0.00 0.00 39.77 3.06
452 600 9.746711 CGAATTACTTGTCTTGAATTTGTCTAG 57.253 33.333 0.00 0.00 0.00 2.43
453 601 8.717821 CCGAATTACTTGTCTTGAATTTGTCTA 58.282 33.333 0.00 0.00 0.00 2.59
454 602 7.444183 TCCGAATTACTTGTCTTGAATTTGTCT 59.556 33.333 0.00 0.00 0.00 3.41
455 603 7.581476 TCCGAATTACTTGTCTTGAATTTGTC 58.419 34.615 0.00 0.00 0.00 3.18
456 604 7.504924 TCCGAATTACTTGTCTTGAATTTGT 57.495 32.000 0.00 0.00 0.00 2.83
457 605 7.059488 CGTTCCGAATTACTTGTCTTGAATTTG 59.941 37.037 0.00 0.00 0.00 2.32
458 606 7.075741 CGTTCCGAATTACTTGTCTTGAATTT 58.924 34.615 0.00 0.00 0.00 1.82
459 607 6.348213 CCGTTCCGAATTACTTGTCTTGAATT 60.348 38.462 0.00 0.00 0.00 2.17
460 608 5.121768 CCGTTCCGAATTACTTGTCTTGAAT 59.878 40.000 0.00 0.00 0.00 2.57
461 609 4.449743 CCGTTCCGAATTACTTGTCTTGAA 59.550 41.667 0.00 0.00 0.00 2.69
462 610 3.991773 CCGTTCCGAATTACTTGTCTTGA 59.008 43.478 0.00 0.00 0.00 3.02
463 611 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
464 612 4.021719 TCTCCGTTCCGAATTACTTGTCTT 60.022 41.667 0.00 0.00 0.00 3.01
465 613 3.508793 TCTCCGTTCCGAATTACTTGTCT 59.491 43.478 0.00 0.00 0.00 3.41
466 614 3.841643 TCTCCGTTCCGAATTACTTGTC 58.158 45.455 0.00 0.00 0.00 3.18
467 615 3.508793 TCTCTCCGTTCCGAATTACTTGT 59.491 43.478 0.00 0.00 0.00 3.16
468 616 4.106029 TCTCTCCGTTCCGAATTACTTG 57.894 45.455 0.00 0.00 0.00 3.16
469 617 3.762823 ACTCTCTCCGTTCCGAATTACTT 59.237 43.478 0.00 0.00 0.00 2.24
470 618 3.354467 ACTCTCTCCGTTCCGAATTACT 58.646 45.455 0.00 0.00 0.00 2.24
471 619 3.779271 ACTCTCTCCGTTCCGAATTAC 57.221 47.619 0.00 0.00 0.00 1.89
472 620 4.264253 TGTACTCTCTCCGTTCCGAATTA 58.736 43.478 0.00 0.00 0.00 1.40
473 621 3.087031 TGTACTCTCTCCGTTCCGAATT 58.913 45.455 0.00 0.00 0.00 2.17
474 622 2.719739 TGTACTCTCTCCGTTCCGAAT 58.280 47.619 0.00 0.00 0.00 3.34
475 623 2.189594 TGTACTCTCTCCGTTCCGAA 57.810 50.000 0.00 0.00 0.00 4.30
476 624 2.189594 TTGTACTCTCTCCGTTCCGA 57.810 50.000 0.00 0.00 0.00 4.55
477 625 3.505464 ATTTGTACTCTCTCCGTTCCG 57.495 47.619 0.00 0.00 0.00 4.30
478 626 7.010275 GTCATTAATTTGTACTCTCTCCGTTCC 59.990 40.741 0.00 0.00 0.00 3.62
479 627 7.544566 TGTCATTAATTTGTACTCTCTCCGTTC 59.455 37.037 0.00 0.00 0.00 3.95
480 628 7.383687 TGTCATTAATTTGTACTCTCTCCGTT 58.616 34.615 0.00 0.00 0.00 4.44
481 629 6.931838 TGTCATTAATTTGTACTCTCTCCGT 58.068 36.000 0.00 0.00 0.00 4.69
482 630 7.706607 TCATGTCATTAATTTGTACTCTCTCCG 59.293 37.037 0.00 0.00 0.00 4.63
483 631 8.948631 TCATGTCATTAATTTGTACTCTCTCC 57.051 34.615 0.00 0.00 0.00 3.71
486 634 9.443283 GCATTCATGTCATTAATTTGTACTCTC 57.557 33.333 0.00 0.00 0.00 3.20
487 635 8.959548 TGCATTCATGTCATTAATTTGTACTCT 58.040 29.630 0.00 0.00 0.00 3.24
488 636 9.740239 ATGCATTCATGTCATTAATTTGTACTC 57.260 29.630 0.00 0.00 0.00 2.59
489 637 9.524106 CATGCATTCATGTCATTAATTTGTACT 57.476 29.630 0.00 0.00 43.85 2.73
537 685 2.005451 CACGAAGCAAATGGGAGAGAG 58.995 52.381 0.00 0.00 0.00 3.20
553 701 3.688185 CACTCAGTTACCTACTAGCACGA 59.312 47.826 0.00 0.00 34.56 4.35
555 703 3.192844 TGCACTCAGTTACCTACTAGCAC 59.807 47.826 0.00 0.00 34.56 4.40
592 741 5.435686 TGTGGGGAATATAGCATATCACC 57.564 43.478 0.00 0.00 35.86 4.02
716 1853 0.815615 CCGCAGCTCCTATGGGAAAC 60.816 60.000 0.00 0.00 41.69 2.78
755 1901 0.107508 AACGGATGACTGGGATGCAG 60.108 55.000 0.00 0.00 0.00 4.41
1632 2778 0.252479 AAGGCATGCAGGTGAGAGAG 59.748 55.000 21.36 0.00 0.00 3.20
1834 3139 2.642311 TGGCACAGATTCTAAAGGGACA 59.358 45.455 0.00 0.00 0.00 4.02
1896 3201 2.981560 GATGCTGCCGGTGTTGGTG 61.982 63.158 1.90 0.00 0.00 4.17
1904 3209 0.250858 TCCCAATATGATGCTGCCGG 60.251 55.000 0.00 0.00 0.00 6.13
2281 3586 1.750206 TGCAACTCAAGCTTCAAGCAA 59.250 42.857 13.10 0.00 45.56 3.91
2371 3676 6.707161 ACAAATGCTACAACATCAAAAGCAAT 59.293 30.769 0.00 0.00 45.47 3.56
2420 3725 1.189752 ATCTCCAGCTGACGACACAT 58.810 50.000 17.39 0.00 0.00 3.21
2669 3975 4.027702 GCGGAATGCTTATTAAGTTTTGCG 60.028 41.667 19.71 19.71 41.73 4.85
2775 4081 2.616376 CGAGGTTGTGTGGACATTGAAA 59.384 45.455 0.00 0.00 30.13 2.69
2831 4137 5.490139 TGCTCTTCAAGAAGAAAGTGTTG 57.510 39.130 13.04 2.17 45.75 3.33
2884 4190 6.791887 AGATGATGCCAATACAATCTAACG 57.208 37.500 0.00 0.00 0.00 3.18
3035 4595 9.220767 GTGAGAATTGGTTCTATGTTTTAGTCT 57.779 33.333 0.00 0.00 44.57 3.24
3106 4666 5.719173 AGCAAAAGTCAAACTTGCACTTTA 58.281 33.333 14.66 0.00 46.26 1.85
3164 4725 0.764890 TTGACAGGAGAACCAGTGGG 59.235 55.000 15.21 0.00 36.05 4.61
3342 4903 9.595823 GCAGTACTATTTACATAGTCCAAAAGA 57.404 33.333 4.81 0.00 41.73 2.52
3831 5424 4.344679 TGGATTTGCATCAGTTTCCACTTT 59.655 37.500 0.00 0.00 0.00 2.66
4295 5888 5.364778 TCTCGGAACAAACTTTCTTGATGA 58.635 37.500 0.00 0.00 0.00 2.92
4358 5951 3.385111 GGACGAGTGGAGATGGTCTAATT 59.615 47.826 0.00 0.00 0.00 1.40
4365 5958 2.435693 GGGGGACGAGTGGAGATGG 61.436 68.421 0.00 0.00 0.00 3.51
4520 6114 0.834261 CAAAACCATTTCCCCCGGGT 60.834 55.000 21.85 0.00 36.47 5.28
4532 6135 0.600557 ATGATTTCGCGCCAAAACCA 59.399 45.000 3.82 6.36 0.00 3.67
4585 6189 0.537188 ACGGAAGCAATGAGGACGAT 59.463 50.000 0.00 0.00 0.00 3.73
4661 6265 2.350895 CCTTCACCATGCCGTCCA 59.649 61.111 0.00 0.00 0.00 4.02
4669 6273 1.815421 GTCGATGCGCCTTCACCAT 60.815 57.895 4.18 0.00 0.00 3.55
4670 6274 2.434185 GTCGATGCGCCTTCACCA 60.434 61.111 4.18 0.00 0.00 4.17
4671 6275 3.554692 CGTCGATGCGCCTTCACC 61.555 66.667 4.18 0.00 0.00 4.02
4744 6349 2.637589 GCTTTTATAGCGGCGGGC 59.362 61.111 9.78 0.00 40.71 6.13
5314 6982 2.038813 TCCATCTCCTGCCGGACA 59.961 61.111 5.05 1.09 34.92 4.02
5362 7030 2.279784 GATCTCCTTGAGGGCGCG 60.280 66.667 0.00 0.00 35.41 6.86
5363 7031 0.602372 GATGATCTCCTTGAGGGCGC 60.602 60.000 0.00 0.00 35.41 6.53
5364 7032 0.319383 CGATGATCTCCTTGAGGGCG 60.319 60.000 0.00 0.00 35.41 6.13
5365 7033 0.602372 GCGATGATCTCCTTGAGGGC 60.602 60.000 0.00 0.00 35.41 5.19
5366 7034 0.034616 GGCGATGATCTCCTTGAGGG 59.965 60.000 0.00 0.00 35.41 4.30
5367 7035 1.047002 AGGCGATGATCTCCTTGAGG 58.953 55.000 0.00 0.00 23.81 3.86
5368 7036 1.270199 CCAGGCGATGATCTCCTTGAG 60.270 57.143 0.24 0.00 26.97 3.02
5369 7037 0.755079 CCAGGCGATGATCTCCTTGA 59.245 55.000 0.24 0.00 26.97 3.02
5370 7038 0.883814 GCCAGGCGATGATCTCCTTG 60.884 60.000 0.24 0.00 26.97 3.61
5371 7039 1.449353 GCCAGGCGATGATCTCCTT 59.551 57.895 0.24 0.00 26.97 3.36
5372 7040 3.146182 GCCAGGCGATGATCTCCT 58.854 61.111 0.00 0.00 30.30 3.69
5423 7091 2.724721 CGTCGTCGCTGTCGTTGT 60.725 61.111 0.00 0.00 36.96 3.32
5488 7171 2.594592 GCCGTCCTTGTTGCACCT 60.595 61.111 0.00 0.00 0.00 4.00
5511 7215 2.669229 TAGTCACCGCCGTCGTCA 60.669 61.111 0.00 0.00 0.00 4.35
5833 7641 2.861360 GCCGTAAAGTGAGCGGTATAGG 60.861 54.545 4.16 0.00 46.41 2.57
5834 7642 2.223641 TGCCGTAAAGTGAGCGGTATAG 60.224 50.000 4.16 0.00 46.41 1.31
5840 7648 3.063452 ACATTATTGCCGTAAAGTGAGCG 59.937 43.478 0.00 0.00 0.00 5.03
5972 7787 6.238731 GCACAGCTAGATGCAAAATGGTATAA 60.239 38.462 8.16 0.00 45.94 0.98
6002 7817 1.923356 ACTCGCCAAAAATCCCACAT 58.077 45.000 0.00 0.00 0.00 3.21
6140 7961 0.897621 TCATCAGTGTCGCCATCACT 59.102 50.000 0.00 0.00 45.43 3.41
6148 7969 5.008019 CCCTTTTGGATAATCATCAGTGTCG 59.992 44.000 0.00 0.00 44.07 4.35
6160 7981 2.314549 ACCAGGATGCCCTTTTGGATAA 59.685 45.455 0.00 0.00 42.02 1.75
6245 8084 2.726821 CAGAAATGCAGGGAAAGGCTA 58.273 47.619 0.00 0.00 0.00 3.93
6364 8203 5.512298 TGTGACCTCATCCATCATGAAAAT 58.488 37.500 0.00 0.00 41.25 1.82
6370 8209 2.174210 CCCTTGTGACCTCATCCATCAT 59.826 50.000 0.00 0.00 0.00 2.45
6453 8292 1.132453 CTCGTCTGACTATCGCCAACA 59.868 52.381 6.21 0.00 0.00 3.33
6531 8370 4.459337 CCAAAGGAGGCCTTAGTTTTACTG 59.541 45.833 6.77 0.00 43.92 2.74
6544 8383 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
6545 8384 6.183360 ACAAAAATCCTACAAACCAAAGGAGG 60.183 38.462 0.00 0.00 42.53 4.30
6546 8385 6.816136 ACAAAAATCCTACAAACCAAAGGAG 58.184 36.000 0.00 0.00 42.53 3.69
6547 8386 6.800072 ACAAAAATCCTACAAACCAAAGGA 57.200 33.333 0.00 0.00 43.38 3.36
6548 8387 7.014808 TCCTACAAAAATCCTACAAACCAAAGG 59.985 37.037 0.00 0.00 0.00 3.11
6549 8388 7.947282 TCCTACAAAAATCCTACAAACCAAAG 58.053 34.615 0.00 0.00 0.00 2.77
6550 8389 7.899648 TCCTACAAAAATCCTACAAACCAAA 57.100 32.000 0.00 0.00 0.00 3.28
6551 8390 7.899648 TTCCTACAAAAATCCTACAAACCAA 57.100 32.000 0.00 0.00 0.00 3.67
6552 8391 8.485578 AATTCCTACAAAAATCCTACAAACCA 57.514 30.769 0.00 0.00 0.00 3.67
6553 8392 8.803235 AGAATTCCTACAAAAATCCTACAAACC 58.197 33.333 0.65 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.