Multiple sequence alignment - TraesCS3A01G198100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G198100 chr3A 100.000 1930 0 0 425 2354 312751975 312750046 0.000000e+00 3565.0
1 TraesCS3A01G198100 chr3A 95.591 1361 57 3 693 2052 312760304 312758946 0.000000e+00 2178.0
2 TraesCS3A01G198100 chr3A 94.444 180 9 1 558 737 312760500 312760322 2.300000e-70 276.0
3 TraesCS3A01G198100 chr3A 100.000 74 0 0 1433 1506 310770225 310770298 1.130000e-28 137.0
4 TraesCS3A01G198100 chr3A 97.222 72 2 0 1435 1506 310762288 310762359 3.180000e-24 122.0
5 TraesCS3A01G198100 chr3A 100.000 41 0 0 1 41 312752399 312752359 2.510000e-10 76.8
6 TraesCS3A01G198100 chr7A 93.726 1546 87 8 510 2052 463066082 463067620 0.000000e+00 2309.0
7 TraesCS3A01G198100 chr7A 99.007 302 3 0 2053 2354 156616563 156616864 2.060000e-150 542.0
8 TraesCS3A01G198100 chr7A 82.246 276 39 6 731 996 622189534 622189809 1.820000e-56 230.0
9 TraesCS3A01G198100 chr7A 95.122 41 2 0 1 41 463065634 463065674 5.430000e-07 65.8
10 TraesCS3A01G198100 chr6B 90.193 571 43 12 1487 2052 544564523 544563961 0.000000e+00 732.0
11 TraesCS3A01G198100 chr6B 90.175 570 45 10 1487 2052 544575717 544575155 0.000000e+00 732.0
12 TraesCS3A01G198100 chr7B 88.287 572 52 14 1487 2052 208347589 208347027 0.000000e+00 671.0
13 TraesCS3A01G198100 chr7B 88.771 472 41 10 1516 1984 275439058 275438596 3.400000e-158 568.0
14 TraesCS3A01G198100 chr2D 86.628 516 57 11 1543 2052 242523962 242524471 5.680000e-156 560.0
15 TraesCS3A01G198100 chr2D 84.665 463 45 6 731 1184 296645179 296644734 2.780000e-119 438.0
16 TraesCS3A01G198100 chr2D 83.077 390 41 9 731 1111 296659113 296658740 4.850000e-87 331.0
17 TraesCS3A01G198100 chr2D 83.273 275 37 2 731 996 815014 815288 6.500000e-61 244.0
18 TraesCS3A01G198100 chr5D 84.114 598 71 19 1462 2052 564054113 564054693 7.350000e-155 556.0
19 TraesCS3A01G198100 chr5D 82.609 276 38 6 731 996 63048256 63048531 3.910000e-58 235.0
20 TraesCS3A01G198100 chr6A 98.675 302 4 0 2053 2354 198382198 198382499 9.570000e-149 536.0
21 TraesCS3A01G198100 chr6A 98.675 302 4 0 2053 2354 201039935 201039634 9.570000e-149 536.0
22 TraesCS3A01G198100 chr6A 98.675 302 4 0 2053 2354 336523475 336523776 9.570000e-149 536.0
23 TraesCS3A01G198100 chr6A 83.631 336 43 12 1131 1460 374990085 374990414 2.940000e-79 305.0
24 TraesCS3A01G198100 chr6A 85.656 244 24 7 1237 1472 375004789 375005029 1.810000e-61 246.0
25 TraesCS3A01G198100 chr6A 89.000 200 20 1 1159 1356 375055864 375056063 1.810000e-61 246.0
26 TraesCS3A01G198100 chr6A 85.656 244 24 7 1237 1472 375056125 375056365 1.810000e-61 246.0
27 TraesCS3A01G198100 chr5A 98.675 302 4 0 2053 2354 270432841 270432540 9.570000e-149 536.0
28 TraesCS3A01G198100 chr5A 98.675 302 4 0 2053 2354 321360563 321360864 9.570000e-149 536.0
29 TraesCS3A01G198100 chr5A 98.675 302 4 0 2053 2354 573687928 573688229 9.570000e-149 536.0
30 TraesCS3A01G198100 chr5A 98.675 302 4 0 2053 2354 581599924 581599623 9.570000e-149 536.0
31 TraesCS3A01G198100 chr5A 98.675 302 4 0 2053 2354 615101970 615101669 9.570000e-149 536.0
32 TraesCS3A01G198100 chr5A 84.277 159 24 1 1016 1173 171628090 171627932 1.130000e-33 154.0
33 TraesCS3A01G198100 chr5B 83.826 575 73 15 1483 2052 622253561 622254120 1.600000e-146 529.0
34 TraesCS3A01G198100 chr4B 87.469 399 34 10 791 1173 364933740 364933342 1.660000e-121 446.0
35 TraesCS3A01G198100 chr4B 86.392 316 39 4 1159 1472 315629746 315630059 2.240000e-90 342.0
36 TraesCS3A01G198100 chr3B 82.056 496 59 9 699 1184 417973758 417974233 1.700000e-106 396.0
37 TraesCS3A01G198100 chr3B 82.056 496 59 9 699 1184 417981222 417981697 1.700000e-106 396.0
38 TraesCS3A01G198100 chr4A 82.505 463 55 13 731 1184 632330001 632330446 1.320000e-102 383.0
39 TraesCS3A01G198100 chr7D 83.333 276 36 6 731 996 433994627 433994352 1.810000e-61 246.0
40 TraesCS3A01G198100 chr3D 82.246 276 39 6 731 996 41541575 41541850 1.820000e-56 230.0
41 TraesCS3A01G198100 chr1A 89.143 175 18 1 1162 1335 81213996 81213822 1.420000e-52 217.0
42 TraesCS3A01G198100 chr1A 100.000 74 0 0 1433 1506 130482707 130482780 1.130000e-28 137.0
43 TraesCS3A01G198100 chr1A 98.649 74 1 0 1433 1506 130474757 130474830 5.280000e-27 132.0
44 TraesCS3A01G198100 chr1D 88.889 135 12 3 476 610 294146532 294146401 1.870000e-36 163.0
45 TraesCS3A01G198100 chr6D 88.136 118 13 1 482 599 295628107 295627991 3.150000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G198100 chr3A 312750046 312752399 2353 True 1820.9 3565 100.0000 1 2354 2 chr3A.!!$R1 2353
1 TraesCS3A01G198100 chr3A 312758946 312760500 1554 True 1227.0 2178 95.0175 558 2052 2 chr3A.!!$R2 1494
2 TraesCS3A01G198100 chr7A 463065634 463067620 1986 False 1187.4 2309 94.4240 1 2052 2 chr7A.!!$F3 2051
3 TraesCS3A01G198100 chr6B 544563961 544564523 562 True 732.0 732 90.1930 1487 2052 1 chr6B.!!$R1 565
4 TraesCS3A01G198100 chr6B 544575155 544575717 562 True 732.0 732 90.1750 1487 2052 1 chr6B.!!$R2 565
5 TraesCS3A01G198100 chr7B 208347027 208347589 562 True 671.0 671 88.2870 1487 2052 1 chr7B.!!$R1 565
6 TraesCS3A01G198100 chr2D 242523962 242524471 509 False 560.0 560 86.6280 1543 2052 1 chr2D.!!$F2 509
7 TraesCS3A01G198100 chr5D 564054113 564054693 580 False 556.0 556 84.1140 1462 2052 1 chr5D.!!$F2 590
8 TraesCS3A01G198100 chr6A 375055864 375056365 501 False 246.0 246 87.3280 1159 1472 2 chr6A.!!$F5 313
9 TraesCS3A01G198100 chr5B 622253561 622254120 559 False 529.0 529 83.8260 1483 2052 1 chr5B.!!$F1 569


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 952 0.473326 GAGTAGTAGAGGCGAGGGGA 59.527 60.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2323 2904 0.321298 TCAGCCCCTTACGAAGCAAC 60.321 55.0 0.0 0.0 0.0 4.17 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
500 501 4.421554 AGGCAGGCAGGGGAGCTA 62.422 66.667 0.00 0.00 34.17 3.32
501 502 4.182433 GGCAGGCAGGGGAGCTAC 62.182 72.222 0.00 0.00 34.17 3.58
502 503 4.182433 GCAGGCAGGGGAGCTACC 62.182 72.222 6.36 6.36 38.08 3.18
503 504 3.854669 CAGGCAGGGGAGCTACCG 61.855 72.222 9.48 0.00 40.11 4.02
631 946 0.529337 CCGACGAGTAGTAGAGGCGA 60.529 60.000 0.00 0.00 0.00 5.54
636 952 0.473326 GAGTAGTAGAGGCGAGGGGA 59.527 60.000 0.00 0.00 0.00 4.81
745 1123 2.973899 CGGCAGCAGGTGAGTAGT 59.026 61.111 3.02 0.00 0.00 2.73
799 1177 3.490793 CTCGAGCGGGCGTGATGAT 62.491 63.158 0.00 0.00 0.00 2.45
926 1304 1.067416 GTGGATGGTCGAGCGCATA 59.933 57.895 11.47 0.00 0.00 3.14
1060 1438 1.134189 GGGAGGAATCGAACGGGAAAT 60.134 52.381 0.00 0.00 0.00 2.17
1086 1464 1.610522 GCTTTTGATGTGGTGCTCACT 59.389 47.619 11.00 0.00 46.20 3.41
1144 1522 2.031919 AACGGCAGCGGATTGACA 59.968 55.556 7.02 0.00 0.00 3.58
1145 1523 1.573829 GAACGGCAGCGGATTGACAA 61.574 55.000 7.02 0.00 0.00 3.18
1204 1584 4.115199 GGGCATGGAGGCGTCCTT 62.115 66.667 24.96 16.74 44.30 3.36
1226 1606 2.122768 CTTGACCTGGGCCTTAGAGAT 58.877 52.381 4.53 0.00 0.00 2.75
1516 2085 1.186200 CTGCCTCCTGTACTGTAGCA 58.814 55.000 0.00 1.78 0.00 3.49
1525 2094 3.511934 CCTGTACTGTAGCAAGAGGAAGT 59.488 47.826 0.00 0.00 0.00 3.01
1550 2119 3.570212 GTGGGAGTGTGGGCTGGT 61.570 66.667 0.00 0.00 0.00 4.00
1799 2375 3.561143 AGCCAATTAATATGCCGTTGGA 58.439 40.909 6.62 0.00 41.36 3.53
2046 2627 7.729124 TTACTATAGCTTAATTATCCGGGCT 57.271 36.000 0.00 1.57 0.00 5.19
2052 2633 3.821033 GCTTAATTATCCGGGCTTCACAT 59.179 43.478 0.00 0.00 0.00 3.21
2053 2634 5.001232 GCTTAATTATCCGGGCTTCACATA 58.999 41.667 0.00 0.00 0.00 2.29
2054 2635 5.472137 GCTTAATTATCCGGGCTTCACATAA 59.528 40.000 0.00 0.00 0.00 1.90
2055 2636 6.151144 GCTTAATTATCCGGGCTTCACATAAT 59.849 38.462 0.00 0.00 0.00 1.28
2056 2637 7.335924 GCTTAATTATCCGGGCTTCACATAATA 59.664 37.037 0.00 0.00 0.00 0.98
2057 2638 8.556213 TTAATTATCCGGGCTTCACATAATAC 57.444 34.615 0.00 0.00 0.00 1.89
2058 2639 2.922740 TCCGGGCTTCACATAATACC 57.077 50.000 0.00 0.00 0.00 2.73
2059 2640 1.418637 TCCGGGCTTCACATAATACCC 59.581 52.381 0.00 0.00 0.00 3.69
2060 2641 1.544759 CCGGGCTTCACATAATACCCC 60.545 57.143 0.00 0.00 33.54 4.95
2061 2642 1.420138 CGGGCTTCACATAATACCCCT 59.580 52.381 0.00 0.00 33.54 4.79
2062 2643 2.158667 CGGGCTTCACATAATACCCCTT 60.159 50.000 0.00 0.00 33.54 3.95
2063 2644 3.687264 CGGGCTTCACATAATACCCCTTT 60.687 47.826 0.00 0.00 33.54 3.11
2064 2645 3.636764 GGGCTTCACATAATACCCCTTTG 59.363 47.826 0.00 0.00 0.00 2.77
2065 2646 4.532834 GGCTTCACATAATACCCCTTTGA 58.467 43.478 0.00 0.00 0.00 2.69
2066 2647 5.140454 GGCTTCACATAATACCCCTTTGAT 58.860 41.667 0.00 0.00 0.00 2.57
2067 2648 5.598417 GGCTTCACATAATACCCCTTTGATT 59.402 40.000 0.00 0.00 0.00 2.57
2068 2649 6.775629 GGCTTCACATAATACCCCTTTGATTA 59.224 38.462 0.00 0.00 0.00 1.75
2069 2650 7.451566 GGCTTCACATAATACCCCTTTGATTAT 59.548 37.037 0.00 0.00 0.00 1.28
2070 2651 8.299570 GCTTCACATAATACCCCTTTGATTATG 58.700 37.037 10.73 10.73 44.05 1.90
2071 2652 9.573166 CTTCACATAATACCCCTTTGATTATGA 57.427 33.333 16.69 0.00 42.38 2.15
2072 2653 9.928618 TTCACATAATACCCCTTTGATTATGAA 57.071 29.630 16.69 4.23 42.38 2.57
2073 2654 9.349713 TCACATAATACCCCTTTGATTATGAAC 57.650 33.333 16.69 0.00 42.38 3.18
2074 2655 9.130661 CACATAATACCCCTTTGATTATGAACA 57.869 33.333 16.69 0.00 42.38 3.18
2075 2656 9.881773 ACATAATACCCCTTTGATTATGAACAT 57.118 29.630 16.69 0.00 42.38 2.71
2077 2658 9.881773 ATAATACCCCTTTGATTATGAACATGT 57.118 29.630 0.00 0.00 0.00 3.21
2078 2659 8.608185 AATACCCCTTTGATTATGAACATGTT 57.392 30.769 11.78 11.78 0.00 2.71
2079 2660 6.933514 ACCCCTTTGATTATGAACATGTTT 57.066 33.333 13.36 0.00 0.00 2.83
2080 2661 9.707957 ATACCCCTTTGATTATGAACATGTTTA 57.292 29.630 13.36 9.29 0.00 2.01
2081 2662 8.608185 ACCCCTTTGATTATGAACATGTTTAT 57.392 30.769 18.59 18.59 0.00 1.40
2082 2663 8.477256 ACCCCTTTGATTATGAACATGTTTATG 58.523 33.333 22.35 6.81 40.24 1.90
2083 2664 7.439056 CCCCTTTGATTATGAACATGTTTATGC 59.561 37.037 22.35 13.37 37.85 3.14
2084 2665 8.199449 CCCTTTGATTATGAACATGTTTATGCT 58.801 33.333 22.35 11.37 37.85 3.79
2085 2666 9.590451 CCTTTGATTATGAACATGTTTATGCTT 57.410 29.630 22.35 9.39 37.85 3.91
2088 2669 9.926158 TTGATTATGAACATGTTTATGCTTTGT 57.074 25.926 22.35 1.52 37.85 2.83
2089 2670 9.356433 TGATTATGAACATGTTTATGCTTTGTG 57.644 29.630 22.35 0.00 37.85 3.33
2090 2671 9.571810 GATTATGAACATGTTTATGCTTTGTGA 57.428 29.630 22.35 0.88 37.85 3.58
2091 2672 8.969121 TTATGAACATGTTTATGCTTTGTGAG 57.031 30.769 22.35 0.00 37.85 3.51
2092 2673 6.389830 TGAACATGTTTATGCTTTGTGAGT 57.610 33.333 13.36 0.00 37.85 3.41
2093 2674 7.503521 TGAACATGTTTATGCTTTGTGAGTA 57.496 32.000 13.36 0.00 37.85 2.59
2094 2675 7.584108 TGAACATGTTTATGCTTTGTGAGTAG 58.416 34.615 13.36 0.00 37.85 2.57
2095 2676 7.228507 TGAACATGTTTATGCTTTGTGAGTAGT 59.771 33.333 13.36 0.00 37.85 2.73
2096 2677 7.510549 ACATGTTTATGCTTTGTGAGTAGTT 57.489 32.000 0.00 0.00 37.85 2.24
2097 2678 8.615878 ACATGTTTATGCTTTGTGAGTAGTTA 57.384 30.769 0.00 0.00 37.85 2.24
2098 2679 8.504005 ACATGTTTATGCTTTGTGAGTAGTTAC 58.496 33.333 0.00 0.00 37.85 2.50
2099 2680 8.721478 CATGTTTATGCTTTGTGAGTAGTTACT 58.279 33.333 0.00 0.00 39.71 2.24
2100 2681 8.671384 TGTTTATGCTTTGTGAGTAGTTACTT 57.329 30.769 0.00 0.00 36.50 2.24
2101 2682 9.116067 TGTTTATGCTTTGTGAGTAGTTACTTT 57.884 29.630 0.00 0.00 36.50 2.66
2102 2683 9.946165 GTTTATGCTTTGTGAGTAGTTACTTTT 57.054 29.630 0.00 0.00 36.50 2.27
2103 2684 9.944663 TTTATGCTTTGTGAGTAGTTACTTTTG 57.055 29.630 0.00 0.00 36.50 2.44
2104 2685 6.995511 TGCTTTGTGAGTAGTTACTTTTGT 57.004 33.333 0.00 0.00 36.50 2.83
2105 2686 7.385778 TGCTTTGTGAGTAGTTACTTTTGTT 57.614 32.000 0.00 0.00 36.50 2.83
2106 2687 7.469260 TGCTTTGTGAGTAGTTACTTTTGTTC 58.531 34.615 0.00 0.00 36.50 3.18
2107 2688 7.335924 TGCTTTGTGAGTAGTTACTTTTGTTCT 59.664 33.333 0.00 0.00 36.50 3.01
2108 2689 8.182227 GCTTTGTGAGTAGTTACTTTTGTTCTT 58.818 33.333 0.00 0.00 36.50 2.52
2109 2690 9.490663 CTTTGTGAGTAGTTACTTTTGTTCTTG 57.509 33.333 0.00 0.00 36.50 3.02
2110 2691 8.780846 TTGTGAGTAGTTACTTTTGTTCTTGA 57.219 30.769 0.00 0.00 36.50 3.02
2111 2692 8.420374 TGTGAGTAGTTACTTTTGTTCTTGAG 57.580 34.615 0.00 0.00 36.50 3.02
2112 2693 7.494625 TGTGAGTAGTTACTTTTGTTCTTGAGG 59.505 37.037 0.00 0.00 36.50 3.86
2113 2694 7.709613 GTGAGTAGTTACTTTTGTTCTTGAGGA 59.290 37.037 0.00 0.00 36.50 3.71
2114 2695 7.709613 TGAGTAGTTACTTTTGTTCTTGAGGAC 59.290 37.037 0.00 0.00 36.50 3.85
2115 2696 7.562135 AGTAGTTACTTTTGTTCTTGAGGACA 58.438 34.615 0.00 0.00 31.13 4.02
2116 2697 8.211629 AGTAGTTACTTTTGTTCTTGAGGACAT 58.788 33.333 0.00 0.00 31.13 3.06
2117 2698 7.264373 AGTTACTTTTGTTCTTGAGGACATG 57.736 36.000 0.00 0.00 0.00 3.21
2118 2699 6.263168 AGTTACTTTTGTTCTTGAGGACATGG 59.737 38.462 0.00 0.00 0.00 3.66
2119 2700 3.891366 ACTTTTGTTCTTGAGGACATGGG 59.109 43.478 0.00 0.00 0.00 4.00
2120 2701 3.874383 TTTGTTCTTGAGGACATGGGA 57.126 42.857 0.00 0.00 0.00 4.37
2121 2702 3.423539 TTGTTCTTGAGGACATGGGAG 57.576 47.619 0.00 0.00 0.00 4.30
2122 2703 2.619931 TGTTCTTGAGGACATGGGAGA 58.380 47.619 0.00 0.00 0.00 3.71
2123 2704 2.978978 TGTTCTTGAGGACATGGGAGAA 59.021 45.455 0.00 0.00 0.00 2.87
2124 2705 3.008375 TGTTCTTGAGGACATGGGAGAAG 59.992 47.826 0.00 0.00 0.00 2.85
2125 2706 2.907892 TCTTGAGGACATGGGAGAAGT 58.092 47.619 0.00 0.00 0.00 3.01
2126 2707 2.834549 TCTTGAGGACATGGGAGAAGTC 59.165 50.000 0.00 0.00 0.00 3.01
2127 2708 2.630889 TGAGGACATGGGAGAAGTCT 57.369 50.000 0.00 0.00 32.98 3.24
2128 2709 2.907892 TGAGGACATGGGAGAAGTCTT 58.092 47.619 0.00 0.00 32.98 3.01
2129 2710 2.568956 TGAGGACATGGGAGAAGTCTTG 59.431 50.000 0.00 0.00 32.98 3.02
2130 2711 1.280421 AGGACATGGGAGAAGTCTTGC 59.720 52.381 0.00 0.00 32.98 4.01
2131 2712 1.280421 GGACATGGGAGAAGTCTTGCT 59.720 52.381 0.00 0.00 32.98 3.91
2132 2713 2.501723 GGACATGGGAGAAGTCTTGCTA 59.498 50.000 0.00 0.00 32.98 3.49
2133 2714 3.135530 GGACATGGGAGAAGTCTTGCTAT 59.864 47.826 0.00 0.00 32.98 2.97
2134 2715 4.384647 GGACATGGGAGAAGTCTTGCTATT 60.385 45.833 0.00 0.00 32.98 1.73
2135 2716 5.163301 GGACATGGGAGAAGTCTTGCTATTA 60.163 44.000 0.00 0.00 32.98 0.98
2136 2717 5.923204 ACATGGGAGAAGTCTTGCTATTAG 58.077 41.667 0.00 0.00 0.00 1.73
2137 2718 5.426833 ACATGGGAGAAGTCTTGCTATTAGT 59.573 40.000 0.00 0.00 0.00 2.24
2138 2719 6.611642 ACATGGGAGAAGTCTTGCTATTAGTA 59.388 38.462 0.00 0.00 0.00 1.82
2139 2720 6.716934 TGGGAGAAGTCTTGCTATTAGTAG 57.283 41.667 0.00 0.00 0.00 2.57
2140 2721 6.195700 TGGGAGAAGTCTTGCTATTAGTAGT 58.804 40.000 0.00 0.00 0.00 2.73
2141 2722 6.321690 TGGGAGAAGTCTTGCTATTAGTAGTC 59.678 42.308 0.00 0.00 0.00 2.59
2142 2723 6.321690 GGGAGAAGTCTTGCTATTAGTAGTCA 59.678 42.308 0.00 0.00 0.00 3.41
2143 2724 7.014808 GGGAGAAGTCTTGCTATTAGTAGTCAT 59.985 40.741 0.00 0.00 0.00 3.06
2144 2725 7.865385 GGAGAAGTCTTGCTATTAGTAGTCATG 59.135 40.741 0.00 0.00 0.00 3.07
2145 2726 8.299990 AGAAGTCTTGCTATTAGTAGTCATGT 57.700 34.615 0.00 0.00 0.00 3.21
2146 2727 8.194104 AGAAGTCTTGCTATTAGTAGTCATGTG 58.806 37.037 0.00 0.00 0.00 3.21
2147 2728 7.646548 AGTCTTGCTATTAGTAGTCATGTGA 57.353 36.000 0.00 0.00 0.00 3.58
2148 2729 8.067751 AGTCTTGCTATTAGTAGTCATGTGAA 57.932 34.615 0.00 0.00 0.00 3.18
2149 2730 8.700051 AGTCTTGCTATTAGTAGTCATGTGAAT 58.300 33.333 0.00 0.00 0.00 2.57
2150 2731 9.319143 GTCTTGCTATTAGTAGTCATGTGAATT 57.681 33.333 0.00 0.00 0.00 2.17
2151 2732 9.890629 TCTTGCTATTAGTAGTCATGTGAATTT 57.109 29.630 0.00 0.00 0.00 1.82
2152 2733 9.926751 CTTGCTATTAGTAGTCATGTGAATTTG 57.073 33.333 0.00 0.00 0.00 2.32
2153 2734 8.437360 TGCTATTAGTAGTCATGTGAATTTGG 57.563 34.615 0.00 0.00 0.00 3.28
2154 2735 8.046708 TGCTATTAGTAGTCATGTGAATTTGGT 58.953 33.333 0.00 0.00 0.00 3.67
2155 2736 9.542462 GCTATTAGTAGTCATGTGAATTTGGTA 57.458 33.333 0.00 0.00 0.00 3.25
2159 2740 7.539712 AGTAGTCATGTGAATTTGGTATTCG 57.460 36.000 0.00 0.00 0.00 3.34
2160 2741 7.103641 AGTAGTCATGTGAATTTGGTATTCGT 58.896 34.615 0.00 0.00 0.00 3.85
2161 2742 6.422776 AGTCATGTGAATTTGGTATTCGTC 57.577 37.500 0.00 0.00 0.00 4.20
2162 2743 5.354234 AGTCATGTGAATTTGGTATTCGTCC 59.646 40.000 0.00 0.00 0.00 4.79
2163 2744 4.331443 TCATGTGAATTTGGTATTCGTCCG 59.669 41.667 0.00 0.00 0.00 4.79
2164 2745 3.927854 TGTGAATTTGGTATTCGTCCGA 58.072 40.909 0.00 0.00 0.00 4.55
2165 2746 4.509616 TGTGAATTTGGTATTCGTCCGAT 58.490 39.130 0.00 0.00 0.00 4.18
2166 2747 5.662456 TGTGAATTTGGTATTCGTCCGATA 58.338 37.500 0.00 0.00 0.00 2.92
2167 2748 6.285224 TGTGAATTTGGTATTCGTCCGATAT 58.715 36.000 0.00 0.00 0.00 1.63
2168 2749 6.764085 TGTGAATTTGGTATTCGTCCGATATT 59.236 34.615 0.00 0.00 0.00 1.28
2169 2750 7.281324 TGTGAATTTGGTATTCGTCCGATATTT 59.719 33.333 0.00 0.00 0.00 1.40
2170 2751 8.126700 GTGAATTTGGTATTCGTCCGATATTTT 58.873 33.333 0.00 0.00 0.00 1.82
2171 2752 8.126074 TGAATTTGGTATTCGTCCGATATTTTG 58.874 33.333 0.00 0.00 0.00 2.44
2172 2753 7.795482 ATTTGGTATTCGTCCGATATTTTGA 57.205 32.000 0.00 0.00 0.00 2.69
2173 2754 7.795482 TTTGGTATTCGTCCGATATTTTGAT 57.205 32.000 0.00 0.00 0.00 2.57
2174 2755 6.779115 TGGTATTCGTCCGATATTTTGATG 57.221 37.500 0.00 0.00 0.00 3.07
2175 2756 6.517605 TGGTATTCGTCCGATATTTTGATGA 58.482 36.000 0.00 0.00 0.00 2.92
2176 2757 6.645003 TGGTATTCGTCCGATATTTTGATGAG 59.355 38.462 0.00 0.00 0.00 2.90
2177 2758 6.866770 GGTATTCGTCCGATATTTTGATGAGA 59.133 38.462 0.00 0.00 0.00 3.27
2178 2759 7.545965 GGTATTCGTCCGATATTTTGATGAGAT 59.454 37.037 0.00 0.00 0.00 2.75
2179 2760 6.769608 TTCGTCCGATATTTTGATGAGATG 57.230 37.500 0.00 0.00 0.00 2.90
2180 2761 5.842907 TCGTCCGATATTTTGATGAGATGT 58.157 37.500 0.00 0.00 0.00 3.06
2181 2762 6.977213 TCGTCCGATATTTTGATGAGATGTA 58.023 36.000 0.00 0.00 0.00 2.29
2182 2763 7.602753 TCGTCCGATATTTTGATGAGATGTAT 58.397 34.615 0.00 0.00 0.00 2.29
2183 2764 7.542130 TCGTCCGATATTTTGATGAGATGTATG 59.458 37.037 0.00 0.00 0.00 2.39
2184 2765 7.329471 CGTCCGATATTTTGATGAGATGTATGT 59.671 37.037 0.00 0.00 0.00 2.29
2185 2766 8.993121 GTCCGATATTTTGATGAGATGTATGTT 58.007 33.333 0.00 0.00 0.00 2.71
2186 2767 8.992073 TCCGATATTTTGATGAGATGTATGTTG 58.008 33.333 0.00 0.00 0.00 3.33
2187 2768 8.777413 CCGATATTTTGATGAGATGTATGTTGT 58.223 33.333 0.00 0.00 0.00 3.32
2188 2769 9.803130 CGATATTTTGATGAGATGTATGTTGTC 57.197 33.333 0.00 0.00 0.00 3.18
2192 2773 8.484641 TTTTGATGAGATGTATGTTGTCTCTC 57.515 34.615 0.00 0.00 39.24 3.20
2193 2774 6.154203 TGATGAGATGTATGTTGTCTCTCC 57.846 41.667 0.00 0.00 39.24 3.71
2194 2775 5.896106 TGATGAGATGTATGTTGTCTCTCCT 59.104 40.000 0.00 0.00 39.24 3.69
2195 2776 5.843673 TGAGATGTATGTTGTCTCTCCTC 57.156 43.478 0.00 0.00 39.24 3.71
2196 2777 5.514169 TGAGATGTATGTTGTCTCTCCTCT 58.486 41.667 0.00 0.00 39.24 3.69
2197 2778 6.663734 TGAGATGTATGTTGTCTCTCCTCTA 58.336 40.000 0.00 0.00 39.24 2.43
2198 2779 6.770303 TGAGATGTATGTTGTCTCTCCTCTAG 59.230 42.308 0.00 0.00 39.24 2.43
2199 2780 6.668645 AGATGTATGTTGTCTCTCCTCTAGT 58.331 40.000 0.00 0.00 0.00 2.57
2200 2781 6.545666 AGATGTATGTTGTCTCTCCTCTAGTG 59.454 42.308 0.00 0.00 0.00 2.74
2201 2782 4.950475 TGTATGTTGTCTCTCCTCTAGTGG 59.050 45.833 4.35 4.35 0.00 4.00
2202 2783 3.527507 TGTTGTCTCTCCTCTAGTGGT 57.472 47.619 10.56 0.00 0.00 4.16
2203 2784 3.157881 TGTTGTCTCTCCTCTAGTGGTG 58.842 50.000 10.56 8.48 0.00 4.17
2204 2785 3.158676 GTTGTCTCTCCTCTAGTGGTGT 58.841 50.000 10.56 0.00 0.00 4.16
2205 2786 3.527507 TGTCTCTCCTCTAGTGGTGTT 57.472 47.619 10.56 0.00 0.00 3.32
2206 2787 4.652679 TGTCTCTCCTCTAGTGGTGTTA 57.347 45.455 10.56 0.00 0.00 2.41
2207 2788 5.194473 TGTCTCTCCTCTAGTGGTGTTAT 57.806 43.478 10.56 0.00 0.00 1.89
2208 2789 4.950475 TGTCTCTCCTCTAGTGGTGTTATG 59.050 45.833 10.56 2.51 0.00 1.90
2209 2790 4.951094 GTCTCTCCTCTAGTGGTGTTATGT 59.049 45.833 10.56 0.00 0.00 2.29
2210 2791 4.950475 TCTCTCCTCTAGTGGTGTTATGTG 59.050 45.833 10.56 0.00 0.00 3.21
2211 2792 4.930696 TCTCCTCTAGTGGTGTTATGTGA 58.069 43.478 10.56 0.00 0.00 3.58
2212 2793 5.330233 TCTCCTCTAGTGGTGTTATGTGAA 58.670 41.667 10.56 0.00 0.00 3.18
2213 2794 5.185249 TCTCCTCTAGTGGTGTTATGTGAAC 59.815 44.000 10.56 0.00 0.00 3.18
2214 2795 4.082408 TCCTCTAGTGGTGTTATGTGAACG 60.082 45.833 10.56 0.00 0.00 3.95
2215 2796 4.321750 CCTCTAGTGGTGTTATGTGAACGT 60.322 45.833 2.47 0.00 0.00 3.99
2216 2797 4.801891 TCTAGTGGTGTTATGTGAACGTC 58.198 43.478 0.00 0.00 0.00 4.34
2217 2798 2.400399 AGTGGTGTTATGTGAACGTCG 58.600 47.619 0.00 0.00 0.00 5.12
2218 2799 2.034939 AGTGGTGTTATGTGAACGTCGA 59.965 45.455 0.00 0.00 0.00 4.20
2219 2800 2.154389 GTGGTGTTATGTGAACGTCGAC 59.846 50.000 5.18 5.18 0.00 4.20
2220 2801 2.034939 TGGTGTTATGTGAACGTCGACT 59.965 45.455 14.70 0.00 0.00 4.18
2221 2802 3.252944 TGGTGTTATGTGAACGTCGACTA 59.747 43.478 14.70 0.00 0.00 2.59
2222 2803 3.605486 GGTGTTATGTGAACGTCGACTAC 59.395 47.826 14.70 7.93 0.00 2.73
2223 2804 4.221342 GTGTTATGTGAACGTCGACTACA 58.779 43.478 14.70 13.11 0.00 2.74
2224 2805 4.855388 GTGTTATGTGAACGTCGACTACAT 59.145 41.667 14.70 18.39 36.15 2.29
2225 2806 4.854839 TGTTATGTGAACGTCGACTACATG 59.145 41.667 23.07 9.45 34.22 3.21
2226 2807 3.842732 ATGTGAACGTCGACTACATGA 57.157 42.857 14.70 3.04 31.34 3.07
2227 2808 2.924903 TGTGAACGTCGACTACATGAC 58.075 47.619 14.70 3.45 0.00 3.06
2228 2809 2.291190 TGTGAACGTCGACTACATGACA 59.709 45.455 14.70 6.01 34.78 3.58
2229 2810 2.655474 GTGAACGTCGACTACATGACAC 59.345 50.000 14.70 9.84 34.78 3.67
2230 2811 2.551032 TGAACGTCGACTACATGACACT 59.449 45.455 14.70 0.00 34.78 3.55
2231 2812 3.004002 TGAACGTCGACTACATGACACTT 59.996 43.478 14.70 0.00 34.78 3.16
2232 2813 3.198863 ACGTCGACTACATGACACTTC 57.801 47.619 14.70 0.00 34.78 3.01
2233 2814 2.551032 ACGTCGACTACATGACACTTCA 59.449 45.455 14.70 0.00 34.78 3.02
2234 2815 2.909244 CGTCGACTACATGACACTTCAC 59.091 50.000 14.70 0.00 33.38 3.18
2235 2816 3.243336 GTCGACTACATGACACTTCACC 58.757 50.000 8.70 0.00 33.38 4.02
2236 2817 2.888414 TCGACTACATGACACTTCACCA 59.112 45.455 0.00 0.00 33.38 4.17
2237 2818 3.509967 TCGACTACATGACACTTCACCAT 59.490 43.478 0.00 0.00 33.38 3.55
2238 2819 4.021456 TCGACTACATGACACTTCACCATT 60.021 41.667 0.00 0.00 33.38 3.16
2239 2820 5.184287 TCGACTACATGACACTTCACCATTA 59.816 40.000 0.00 0.00 33.38 1.90
2240 2821 6.042777 CGACTACATGACACTTCACCATTAT 58.957 40.000 0.00 0.00 33.38 1.28
2241 2822 6.535150 CGACTACATGACACTTCACCATTATT 59.465 38.462 0.00 0.00 33.38 1.40
2242 2823 7.064609 CGACTACATGACACTTCACCATTATTT 59.935 37.037 0.00 0.00 33.38 1.40
2243 2824 8.044060 ACTACATGACACTTCACCATTATTTG 57.956 34.615 0.00 0.00 33.38 2.32
2255 2836 4.453480 CCATTATTTGGGCCTAGAGGAA 57.547 45.455 4.53 0.00 42.33 3.36
2256 2837 4.401925 CCATTATTTGGGCCTAGAGGAAG 58.598 47.826 4.53 0.00 42.33 3.46
2257 2838 4.401925 CATTATTTGGGCCTAGAGGAAGG 58.598 47.826 4.53 0.00 39.87 3.46
2265 2846 0.475906 CCTAGAGGAAGGCATTGGGG 59.524 60.000 0.00 0.00 37.39 4.96
2266 2847 1.511613 CTAGAGGAAGGCATTGGGGA 58.488 55.000 0.00 0.00 0.00 4.81
2267 2848 1.419387 CTAGAGGAAGGCATTGGGGAG 59.581 57.143 0.00 0.00 0.00 4.30
2268 2849 0.551131 AGAGGAAGGCATTGGGGAGT 60.551 55.000 0.00 0.00 0.00 3.85
2269 2850 1.213296 GAGGAAGGCATTGGGGAGTA 58.787 55.000 0.00 0.00 0.00 2.59
2270 2851 1.564348 GAGGAAGGCATTGGGGAGTAA 59.436 52.381 0.00 0.00 0.00 2.24
2271 2852 2.175715 GAGGAAGGCATTGGGGAGTAAT 59.824 50.000 0.00 0.00 0.00 1.89
2272 2853 3.394606 GAGGAAGGCATTGGGGAGTAATA 59.605 47.826 0.00 0.00 0.00 0.98
2273 2854 3.791545 AGGAAGGCATTGGGGAGTAATAA 59.208 43.478 0.00 0.00 0.00 1.40
2274 2855 4.141158 AGGAAGGCATTGGGGAGTAATAAG 60.141 45.833 0.00 0.00 0.00 1.73
2275 2856 4.386424 GGAAGGCATTGGGGAGTAATAAGT 60.386 45.833 0.00 0.00 0.00 2.24
2276 2857 5.163131 GGAAGGCATTGGGGAGTAATAAGTA 60.163 44.000 0.00 0.00 0.00 2.24
2277 2858 5.568620 AGGCATTGGGGAGTAATAAGTAG 57.431 43.478 0.00 0.00 0.00 2.57
2278 2859 5.224441 AGGCATTGGGGAGTAATAAGTAGA 58.776 41.667 0.00 0.00 0.00 2.59
2279 2860 5.852250 AGGCATTGGGGAGTAATAAGTAGAT 59.148 40.000 0.00 0.00 0.00 1.98
2280 2861 5.940470 GGCATTGGGGAGTAATAAGTAGATG 59.060 44.000 0.00 0.00 0.00 2.90
2281 2862 6.239887 GGCATTGGGGAGTAATAAGTAGATGA 60.240 42.308 0.00 0.00 0.00 2.92
2282 2863 7.398024 GCATTGGGGAGTAATAAGTAGATGAT 58.602 38.462 0.00 0.00 0.00 2.45
2283 2864 7.335422 GCATTGGGGAGTAATAAGTAGATGATG 59.665 40.741 0.00 0.00 0.00 3.07
2284 2865 6.935240 TGGGGAGTAATAAGTAGATGATGG 57.065 41.667 0.00 0.00 0.00 3.51
2285 2866 5.785423 TGGGGAGTAATAAGTAGATGATGGG 59.215 44.000 0.00 0.00 0.00 4.00
2286 2867 5.785940 GGGGAGTAATAAGTAGATGATGGGT 59.214 44.000 0.00 0.00 0.00 4.51
2287 2868 6.272558 GGGGAGTAATAAGTAGATGATGGGTT 59.727 42.308 0.00 0.00 0.00 4.11
2288 2869 7.162082 GGGAGTAATAAGTAGATGATGGGTTG 58.838 42.308 0.00 0.00 0.00 3.77
2289 2870 6.651225 GGAGTAATAAGTAGATGATGGGTTGC 59.349 42.308 0.00 0.00 0.00 4.17
2290 2871 7.380423 AGTAATAAGTAGATGATGGGTTGCT 57.620 36.000 0.00 0.00 0.00 3.91
2291 2872 8.492415 AGTAATAAGTAGATGATGGGTTGCTA 57.508 34.615 0.00 0.00 0.00 3.49
2292 2873 8.589338 AGTAATAAGTAGATGATGGGTTGCTAG 58.411 37.037 0.00 0.00 0.00 3.42
2293 2874 7.618019 AATAAGTAGATGATGGGTTGCTAGA 57.382 36.000 0.00 0.00 0.00 2.43
2294 2875 5.543507 AAGTAGATGATGGGTTGCTAGAG 57.456 43.478 0.00 0.00 0.00 2.43
2295 2876 4.551671 AGTAGATGATGGGTTGCTAGAGT 58.448 43.478 0.00 0.00 0.00 3.24
2296 2877 3.834489 AGATGATGGGTTGCTAGAGTG 57.166 47.619 0.00 0.00 0.00 3.51
2297 2878 3.378512 AGATGATGGGTTGCTAGAGTGA 58.621 45.455 0.00 0.00 0.00 3.41
2298 2879 3.133721 AGATGATGGGTTGCTAGAGTGAC 59.866 47.826 0.00 0.00 0.00 3.67
2299 2880 2.256306 TGATGGGTTGCTAGAGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
2300 2881 2.234661 TGATGGGTTGCTAGAGTGACAG 59.765 50.000 0.00 0.00 0.00 3.51
2301 2882 2.009681 TGGGTTGCTAGAGTGACAGA 57.990 50.000 0.00 0.00 0.00 3.41
2302 2883 2.325484 TGGGTTGCTAGAGTGACAGAA 58.675 47.619 0.00 0.00 0.00 3.02
2303 2884 2.300152 TGGGTTGCTAGAGTGACAGAAG 59.700 50.000 0.00 0.00 0.00 2.85
2304 2885 2.342179 GGTTGCTAGAGTGACAGAAGC 58.658 52.381 0.00 0.00 0.00 3.86
2305 2886 2.028567 GGTTGCTAGAGTGACAGAAGCT 60.029 50.000 0.00 0.00 34.28 3.74
2306 2887 3.556004 GGTTGCTAGAGTGACAGAAGCTT 60.556 47.826 0.00 0.00 34.28 3.74
2307 2888 4.322049 GGTTGCTAGAGTGACAGAAGCTTA 60.322 45.833 0.00 0.00 34.28 3.09
2308 2889 5.230942 GTTGCTAGAGTGACAGAAGCTTAA 58.769 41.667 0.00 0.00 34.28 1.85
2309 2890 5.468540 TGCTAGAGTGACAGAAGCTTAAA 57.531 39.130 0.00 0.00 34.28 1.52
2310 2891 5.230942 TGCTAGAGTGACAGAAGCTTAAAC 58.769 41.667 0.00 0.00 34.28 2.01
2311 2892 4.627900 GCTAGAGTGACAGAAGCTTAAACC 59.372 45.833 0.00 0.00 0.00 3.27
2312 2893 4.009370 AGAGTGACAGAAGCTTAAACCC 57.991 45.455 0.00 0.00 0.00 4.11
2313 2894 3.648545 AGAGTGACAGAAGCTTAAACCCT 59.351 43.478 0.00 0.00 0.00 4.34
2314 2895 4.838986 AGAGTGACAGAAGCTTAAACCCTA 59.161 41.667 0.00 0.00 0.00 3.53
2315 2896 5.046950 AGAGTGACAGAAGCTTAAACCCTAG 60.047 44.000 0.00 0.00 0.00 3.02
2316 2897 4.593634 AGTGACAGAAGCTTAAACCCTAGT 59.406 41.667 0.00 0.00 0.00 2.57
2317 2898 5.071923 AGTGACAGAAGCTTAAACCCTAGTT 59.928 40.000 0.00 0.00 38.03 2.24
2319 2900 6.932960 GTGACAGAAGCTTAAACCCTAGTTTA 59.067 38.462 0.00 0.00 44.44 2.01
2320 2901 7.606839 GTGACAGAAGCTTAAACCCTAGTTTAT 59.393 37.037 0.00 0.00 45.50 1.40
2321 2902 7.606456 TGACAGAAGCTTAAACCCTAGTTTATG 59.394 37.037 0.00 3.88 45.50 1.90
2327 2908 3.842732 AAACCCTAGTTTATGCGTTGC 57.157 42.857 0.00 0.00 44.44 4.17
2328 2909 2.781681 ACCCTAGTTTATGCGTTGCT 57.218 45.000 0.00 0.00 0.00 3.91
2329 2910 3.067684 ACCCTAGTTTATGCGTTGCTT 57.932 42.857 0.00 0.00 0.00 3.91
2330 2911 3.007635 ACCCTAGTTTATGCGTTGCTTC 58.992 45.455 0.00 0.00 0.00 3.86
2331 2912 2.030457 CCCTAGTTTATGCGTTGCTTCG 59.970 50.000 0.00 0.00 0.00 3.79
2332 2913 2.671396 CCTAGTTTATGCGTTGCTTCGT 59.329 45.455 0.00 0.00 0.00 3.85
2333 2914 3.861113 CCTAGTTTATGCGTTGCTTCGTA 59.139 43.478 0.00 0.00 0.00 3.43
2334 2915 4.327898 CCTAGTTTATGCGTTGCTTCGTAA 59.672 41.667 0.00 0.00 0.00 3.18
2335 2916 4.322101 AGTTTATGCGTTGCTTCGTAAG 57.678 40.909 0.00 0.00 0.00 2.34
2336 2917 3.124636 AGTTTATGCGTTGCTTCGTAAGG 59.875 43.478 0.00 0.00 38.47 2.69
2337 2918 1.647346 TATGCGTTGCTTCGTAAGGG 58.353 50.000 0.00 0.00 38.47 3.95
2338 2919 1.024579 ATGCGTTGCTTCGTAAGGGG 61.025 55.000 3.52 0.00 38.47 4.79
2339 2920 3.035576 GCGTTGCTTCGTAAGGGGC 62.036 63.158 3.52 0.00 38.47 5.80
2340 2921 1.375523 CGTTGCTTCGTAAGGGGCT 60.376 57.895 0.00 0.00 36.51 5.19
2341 2922 1.635663 CGTTGCTTCGTAAGGGGCTG 61.636 60.000 0.00 0.00 36.51 4.85
2342 2923 0.321298 GTTGCTTCGTAAGGGGCTGA 60.321 55.000 0.00 0.00 36.51 4.26
2343 2924 0.618458 TTGCTTCGTAAGGGGCTGAT 59.382 50.000 0.00 0.00 36.51 2.90
2344 2925 0.618458 TGCTTCGTAAGGGGCTGATT 59.382 50.000 0.00 0.00 36.51 2.57
2345 2926 1.004277 TGCTTCGTAAGGGGCTGATTT 59.996 47.619 0.00 0.00 36.51 2.17
2346 2927 1.401905 GCTTCGTAAGGGGCTGATTTG 59.598 52.381 0.00 0.00 38.47 2.32
2347 2928 2.017049 CTTCGTAAGGGGCTGATTTGG 58.983 52.381 0.00 0.00 38.47 3.28
2348 2929 1.281419 TCGTAAGGGGCTGATTTGGA 58.719 50.000 0.00 0.00 38.47 3.53
2349 2930 1.843851 TCGTAAGGGGCTGATTTGGAT 59.156 47.619 0.00 0.00 38.47 3.41
2350 2931 2.158813 TCGTAAGGGGCTGATTTGGATC 60.159 50.000 0.00 0.00 38.47 3.36
2351 2932 2.587522 GTAAGGGGCTGATTTGGATCC 58.412 52.381 4.20 4.20 0.00 3.36
2352 2933 1.009997 AAGGGGCTGATTTGGATCCA 58.990 50.000 11.44 11.44 0.00 3.41
2353 2934 1.238615 AGGGGCTGATTTGGATCCAT 58.761 50.000 17.06 0.06 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
483 484 4.421554 TAGCTCCCCTGCCTGCCT 62.422 66.667 0.00 0.00 0.00 4.75
484 485 4.182433 GTAGCTCCCCTGCCTGCC 62.182 72.222 0.00 0.00 0.00 4.85
485 486 4.182433 GGTAGCTCCCCTGCCTGC 62.182 72.222 0.00 0.00 42.51 4.85
486 487 3.854669 CGGTAGCTCCCCTGCCTG 61.855 72.222 0.00 0.00 43.52 4.85
491 492 4.541648 ATCGCCGGTAGCTCCCCT 62.542 66.667 1.90 0.00 40.39 4.79
492 493 4.301027 CATCGCCGGTAGCTCCCC 62.301 72.222 1.90 0.00 40.39 4.81
493 494 4.971125 GCATCGCCGGTAGCTCCC 62.971 72.222 1.90 0.00 40.39 4.30
615 930 0.179051 CCCTCGCCTCTACTACTCGT 60.179 60.000 0.00 0.00 0.00 4.18
700 1016 2.353323 CTTCTGTTGCTGATGCTGCTA 58.647 47.619 0.00 0.00 40.48 3.49
742 1120 1.735376 GCTGCGCTACTGCCCTACTA 61.735 60.000 9.73 0.00 37.26 1.82
745 1123 3.074369 TGCTGCGCTACTGCCCTA 61.074 61.111 9.73 0.00 42.24 3.53
785 1163 4.471908 TGCATCATCACGCCCGCT 62.472 61.111 0.00 0.00 0.00 5.52
789 1167 2.406401 GTGCTGCATCATCACGCC 59.594 61.111 5.27 0.00 0.00 5.68
1060 1438 2.455557 CACCACATCAAAAGCCCCATA 58.544 47.619 0.00 0.00 0.00 2.74
1144 1522 1.080298 CTACCCGTCGGCGTTCTTT 60.080 57.895 9.28 0.00 36.15 2.52
1145 1523 1.930908 CTCTACCCGTCGGCGTTCTT 61.931 60.000 9.28 0.00 36.15 2.52
1191 1571 1.377725 CAAGCAAGGACGCCTCCAT 60.378 57.895 4.47 0.00 39.39 3.41
1204 1584 0.840288 TCTAAGGCCCAGGTCAAGCA 60.840 55.000 0.00 0.00 0.00 3.91
1324 1885 4.473520 CTCCCTCCCGTGCGCAAT 62.474 66.667 14.00 0.00 0.00 3.56
1393 1960 0.527169 GCCTACTTTACCTCGTCGCC 60.527 60.000 0.00 0.00 0.00 5.54
1394 1961 0.527169 GGCCTACTTTACCTCGTCGC 60.527 60.000 0.00 0.00 0.00 5.19
1516 2085 1.985895 CCACTTACCCCACTTCCTCTT 59.014 52.381 0.00 0.00 0.00 2.85
1525 2094 1.131303 CCACACTCCCACTTACCCCA 61.131 60.000 0.00 0.00 0.00 4.96
1550 2119 6.039270 CCTTTGATGACAACACTACTTTTGGA 59.961 38.462 0.00 0.00 35.63 3.53
1939 2519 7.201145 TCGAAACCGGTTCAAATTCAAAATTA 58.799 30.769 22.53 0.00 35.83 1.40
2046 2627 9.928618 TTCATAATCAAAGGGGTATTATGTGAA 57.071 29.630 11.83 0.00 41.30 3.18
2052 2633 9.707957 AACATGTTCATAATCAAAGGGGTATTA 57.292 29.630 4.92 0.00 0.00 0.98
2053 2634 8.608185 AACATGTTCATAATCAAAGGGGTATT 57.392 30.769 4.92 0.00 0.00 1.89
2054 2635 8.608185 AAACATGTTCATAATCAAAGGGGTAT 57.392 30.769 12.39 0.00 0.00 2.73
2055 2636 9.707957 ATAAACATGTTCATAATCAAAGGGGTA 57.292 29.630 12.39 0.00 0.00 3.69
2056 2637 6.933514 AAACATGTTCATAATCAAAGGGGT 57.066 33.333 12.39 0.00 0.00 4.95
2057 2638 7.439056 GCATAAACATGTTCATAATCAAAGGGG 59.561 37.037 12.39 0.00 0.00 4.79
2058 2639 8.199449 AGCATAAACATGTTCATAATCAAAGGG 58.801 33.333 12.39 0.00 0.00 3.95
2059 2640 9.590451 AAGCATAAACATGTTCATAATCAAAGG 57.410 29.630 12.39 0.00 0.00 3.11
2062 2643 9.926158 ACAAAGCATAAACATGTTCATAATCAA 57.074 25.926 12.39 0.00 0.00 2.57
2063 2644 9.356433 CACAAAGCATAAACATGTTCATAATCA 57.644 29.630 12.39 0.00 0.00 2.57
2064 2645 9.571810 TCACAAAGCATAAACATGTTCATAATC 57.428 29.630 12.39 0.00 0.00 1.75
2065 2646 9.577110 CTCACAAAGCATAAACATGTTCATAAT 57.423 29.630 12.39 0.00 0.00 1.28
2066 2647 8.575589 ACTCACAAAGCATAAACATGTTCATAA 58.424 29.630 12.39 0.00 0.00 1.90
2067 2648 8.109705 ACTCACAAAGCATAAACATGTTCATA 57.890 30.769 12.39 1.68 0.00 2.15
2068 2649 6.985117 ACTCACAAAGCATAAACATGTTCAT 58.015 32.000 12.39 0.00 0.00 2.57
2069 2650 6.389830 ACTCACAAAGCATAAACATGTTCA 57.610 33.333 12.39 0.00 0.00 3.18
2070 2651 7.584987 ACTACTCACAAAGCATAAACATGTTC 58.415 34.615 12.39 0.00 0.00 3.18
2071 2652 7.510549 ACTACTCACAAAGCATAAACATGTT 57.489 32.000 4.92 4.92 0.00 2.71
2072 2653 7.510549 AACTACTCACAAAGCATAAACATGT 57.489 32.000 0.00 0.00 0.00 3.21
2073 2654 8.721478 AGTAACTACTCACAAAGCATAAACATG 58.279 33.333 0.00 0.00 0.00 3.21
2074 2655 8.848474 AGTAACTACTCACAAAGCATAAACAT 57.152 30.769 0.00 0.00 0.00 2.71
2075 2656 8.671384 AAGTAACTACTCACAAAGCATAAACA 57.329 30.769 0.00 0.00 34.99 2.83
2076 2657 9.946165 AAAAGTAACTACTCACAAAGCATAAAC 57.054 29.630 0.00 0.00 34.99 2.01
2077 2658 9.944663 CAAAAGTAACTACTCACAAAGCATAAA 57.055 29.630 0.00 0.00 34.99 1.40
2078 2659 9.116067 ACAAAAGTAACTACTCACAAAGCATAA 57.884 29.630 0.00 0.00 34.99 1.90
2079 2660 8.671384 ACAAAAGTAACTACTCACAAAGCATA 57.329 30.769 0.00 0.00 34.99 3.14
2080 2661 7.568199 ACAAAAGTAACTACTCACAAAGCAT 57.432 32.000 0.00 0.00 34.99 3.79
2081 2662 6.995511 ACAAAAGTAACTACTCACAAAGCA 57.004 33.333 0.00 0.00 34.99 3.91
2082 2663 7.694886 AGAACAAAAGTAACTACTCACAAAGC 58.305 34.615 0.00 0.00 34.99 3.51
2083 2664 9.490663 CAAGAACAAAAGTAACTACTCACAAAG 57.509 33.333 0.00 0.00 34.99 2.77
2084 2665 9.221933 TCAAGAACAAAAGTAACTACTCACAAA 57.778 29.630 0.00 0.00 34.99 2.83
2085 2666 8.780846 TCAAGAACAAAAGTAACTACTCACAA 57.219 30.769 0.00 0.00 34.99 3.33
2086 2667 7.494625 CCTCAAGAACAAAAGTAACTACTCACA 59.505 37.037 0.00 0.00 34.99 3.58
2087 2668 7.709613 TCCTCAAGAACAAAAGTAACTACTCAC 59.290 37.037 0.00 0.00 34.99 3.51
2088 2669 7.709613 GTCCTCAAGAACAAAAGTAACTACTCA 59.290 37.037 0.00 0.00 34.99 3.41
2089 2670 7.709613 TGTCCTCAAGAACAAAAGTAACTACTC 59.290 37.037 0.00 0.00 34.99 2.59
2090 2671 7.562135 TGTCCTCAAGAACAAAAGTAACTACT 58.438 34.615 0.00 0.00 38.39 2.57
2091 2672 7.781548 TGTCCTCAAGAACAAAAGTAACTAC 57.218 36.000 0.00 0.00 0.00 2.73
2092 2673 7.444183 CCATGTCCTCAAGAACAAAAGTAACTA 59.556 37.037 0.00 0.00 0.00 2.24
2093 2674 6.263168 CCATGTCCTCAAGAACAAAAGTAACT 59.737 38.462 0.00 0.00 0.00 2.24
2094 2675 6.438763 CCATGTCCTCAAGAACAAAAGTAAC 58.561 40.000 0.00 0.00 0.00 2.50
2095 2676 5.534654 CCCATGTCCTCAAGAACAAAAGTAA 59.465 40.000 0.00 0.00 0.00 2.24
2096 2677 5.070001 CCCATGTCCTCAAGAACAAAAGTA 58.930 41.667 0.00 0.00 0.00 2.24
2097 2678 3.891366 CCCATGTCCTCAAGAACAAAAGT 59.109 43.478 0.00 0.00 0.00 2.66
2098 2679 4.144297 TCCCATGTCCTCAAGAACAAAAG 58.856 43.478 0.00 0.00 0.00 2.27
2099 2680 4.141274 TCTCCCATGTCCTCAAGAACAAAA 60.141 41.667 0.00 0.00 0.00 2.44
2100 2681 3.394274 TCTCCCATGTCCTCAAGAACAAA 59.606 43.478 0.00 0.00 0.00 2.83
2101 2682 2.978978 TCTCCCATGTCCTCAAGAACAA 59.021 45.455 0.00 0.00 0.00 2.83
2102 2683 2.619931 TCTCCCATGTCCTCAAGAACA 58.380 47.619 0.00 0.00 0.00 3.18
2103 2684 3.008485 ACTTCTCCCATGTCCTCAAGAAC 59.992 47.826 0.00 0.00 0.00 3.01
2104 2685 3.251484 ACTTCTCCCATGTCCTCAAGAA 58.749 45.455 0.00 0.00 0.00 2.52
2105 2686 2.834549 GACTTCTCCCATGTCCTCAAGA 59.165 50.000 0.00 0.00 0.00 3.02
2106 2687 2.836981 AGACTTCTCCCATGTCCTCAAG 59.163 50.000 0.00 0.00 30.79 3.02
2107 2688 2.907892 AGACTTCTCCCATGTCCTCAA 58.092 47.619 0.00 0.00 30.79 3.02
2108 2689 2.568956 CAAGACTTCTCCCATGTCCTCA 59.431 50.000 0.00 0.00 30.79 3.86
2109 2690 2.679349 GCAAGACTTCTCCCATGTCCTC 60.679 54.545 0.00 0.00 30.79 3.71
2110 2691 1.280421 GCAAGACTTCTCCCATGTCCT 59.720 52.381 0.00 0.00 30.79 3.85
2111 2692 1.280421 AGCAAGACTTCTCCCATGTCC 59.720 52.381 0.00 0.00 30.79 4.02
2112 2693 2.777832 AGCAAGACTTCTCCCATGTC 57.222 50.000 0.00 0.00 0.00 3.06
2113 2694 4.851639 AATAGCAAGACTTCTCCCATGT 57.148 40.909 0.00 0.00 0.00 3.21
2114 2695 5.923204 ACTAATAGCAAGACTTCTCCCATG 58.077 41.667 0.00 0.00 0.00 3.66
2115 2696 6.841755 ACTACTAATAGCAAGACTTCTCCCAT 59.158 38.462 0.00 0.00 30.75 4.00
2116 2697 6.195700 ACTACTAATAGCAAGACTTCTCCCA 58.804 40.000 0.00 0.00 30.75 4.37
2117 2698 6.321690 TGACTACTAATAGCAAGACTTCTCCC 59.678 42.308 0.00 0.00 30.75 4.30
2118 2699 7.336161 TGACTACTAATAGCAAGACTTCTCC 57.664 40.000 0.00 0.00 30.75 3.71
2119 2700 8.410141 ACATGACTACTAATAGCAAGACTTCTC 58.590 37.037 0.00 0.00 30.75 2.87
2120 2701 8.194104 CACATGACTACTAATAGCAAGACTTCT 58.806 37.037 0.00 0.00 30.75 2.85
2121 2702 8.191446 TCACATGACTACTAATAGCAAGACTTC 58.809 37.037 0.00 0.00 30.75 3.01
2122 2703 8.067751 TCACATGACTACTAATAGCAAGACTT 57.932 34.615 0.00 0.00 30.75 3.01
2123 2704 7.646548 TCACATGACTACTAATAGCAAGACT 57.353 36.000 0.00 0.00 30.75 3.24
2124 2705 8.879342 ATTCACATGACTACTAATAGCAAGAC 57.121 34.615 0.00 0.00 30.75 3.01
2125 2706 9.890629 AAATTCACATGACTACTAATAGCAAGA 57.109 29.630 0.00 0.00 30.75 3.02
2126 2707 9.926751 CAAATTCACATGACTACTAATAGCAAG 57.073 33.333 0.00 0.00 30.75 4.01
2127 2708 8.892723 CCAAATTCACATGACTACTAATAGCAA 58.107 33.333 0.00 0.00 30.75 3.91
2128 2709 8.046708 ACCAAATTCACATGACTACTAATAGCA 58.953 33.333 0.00 0.00 30.75 3.49
2129 2710 8.438676 ACCAAATTCACATGACTACTAATAGC 57.561 34.615 0.00 0.00 30.75 2.97
2133 2714 9.093970 CGAATACCAAATTCACATGACTACTAA 57.906 33.333 0.00 0.00 0.00 2.24
2134 2715 8.255206 ACGAATACCAAATTCACATGACTACTA 58.745 33.333 0.00 0.00 0.00 1.82
2135 2716 7.103641 ACGAATACCAAATTCACATGACTACT 58.896 34.615 0.00 0.00 0.00 2.57
2136 2717 7.303634 ACGAATACCAAATTCACATGACTAC 57.696 36.000 0.00 0.00 0.00 2.73
2137 2718 6.537301 GGACGAATACCAAATTCACATGACTA 59.463 38.462 0.00 0.00 0.00 2.59
2138 2719 5.354234 GGACGAATACCAAATTCACATGACT 59.646 40.000 0.00 0.00 0.00 3.41
2139 2720 5.569413 GGACGAATACCAAATTCACATGAC 58.431 41.667 0.00 0.00 0.00 3.06
2140 2721 4.331443 CGGACGAATACCAAATTCACATGA 59.669 41.667 0.00 0.00 0.00 3.07
2141 2722 4.331443 TCGGACGAATACCAAATTCACATG 59.669 41.667 0.00 0.00 0.00 3.21
2142 2723 4.509616 TCGGACGAATACCAAATTCACAT 58.490 39.130 0.00 0.00 0.00 3.21
2143 2724 3.927854 TCGGACGAATACCAAATTCACA 58.072 40.909 0.00 0.00 0.00 3.58
2144 2725 6.780706 ATATCGGACGAATACCAAATTCAC 57.219 37.500 0.00 0.00 0.00 3.18
2145 2726 7.795482 AAATATCGGACGAATACCAAATTCA 57.205 32.000 0.00 0.00 0.00 2.57
2146 2727 8.339714 TCAAAATATCGGACGAATACCAAATTC 58.660 33.333 0.00 0.00 0.00 2.17
2147 2728 8.215926 TCAAAATATCGGACGAATACCAAATT 57.784 30.769 0.00 0.00 0.00 1.82
2148 2729 7.795482 TCAAAATATCGGACGAATACCAAAT 57.205 32.000 0.00 0.00 0.00 2.32
2149 2730 7.496263 TCATCAAAATATCGGACGAATACCAAA 59.504 33.333 0.00 0.00 0.00 3.28
2150 2731 6.987404 TCATCAAAATATCGGACGAATACCAA 59.013 34.615 0.00 0.00 0.00 3.67
2151 2732 6.517605 TCATCAAAATATCGGACGAATACCA 58.482 36.000 0.00 0.00 0.00 3.25
2152 2733 6.866770 TCTCATCAAAATATCGGACGAATACC 59.133 38.462 0.00 0.00 0.00 2.73
2153 2734 7.869016 TCTCATCAAAATATCGGACGAATAC 57.131 36.000 0.00 0.00 0.00 1.89
2154 2735 8.088365 ACATCTCATCAAAATATCGGACGAATA 58.912 33.333 0.00 0.00 0.00 1.75
2155 2736 6.931281 ACATCTCATCAAAATATCGGACGAAT 59.069 34.615 0.00 0.00 0.00 3.34
2156 2737 6.280643 ACATCTCATCAAAATATCGGACGAA 58.719 36.000 0.00 0.00 0.00 3.85
2157 2738 5.842907 ACATCTCATCAAAATATCGGACGA 58.157 37.500 0.00 0.00 0.00 4.20
2158 2739 7.329471 ACATACATCTCATCAAAATATCGGACG 59.671 37.037 0.00 0.00 0.00 4.79
2159 2740 8.539770 ACATACATCTCATCAAAATATCGGAC 57.460 34.615 0.00 0.00 0.00 4.79
2160 2741 8.992073 CAACATACATCTCATCAAAATATCGGA 58.008 33.333 0.00 0.00 0.00 4.55
2161 2742 8.777413 ACAACATACATCTCATCAAAATATCGG 58.223 33.333 0.00 0.00 0.00 4.18
2162 2743 9.803130 GACAACATACATCTCATCAAAATATCG 57.197 33.333 0.00 0.00 0.00 2.92
2166 2747 9.107177 GAGAGACAACATACATCTCATCAAAAT 57.893 33.333 3.52 0.00 41.18 1.82
2167 2748 7.550551 GGAGAGACAACATACATCTCATCAAAA 59.449 37.037 3.52 0.00 41.18 2.44
2168 2749 7.044181 GGAGAGACAACATACATCTCATCAAA 58.956 38.462 3.52 0.00 41.18 2.69
2169 2750 6.382282 AGGAGAGACAACATACATCTCATCAA 59.618 38.462 3.52 0.00 41.18 2.57
2170 2751 5.896106 AGGAGAGACAACATACATCTCATCA 59.104 40.000 3.52 0.00 41.18 3.07
2171 2752 6.265196 AGAGGAGAGACAACATACATCTCATC 59.735 42.308 6.98 6.98 44.18 2.92
2172 2753 6.135454 AGAGGAGAGACAACATACATCTCAT 58.865 40.000 3.52 0.00 41.18 2.90
2173 2754 5.514169 AGAGGAGAGACAACATACATCTCA 58.486 41.667 3.52 0.00 41.18 3.27
2174 2755 6.770785 ACTAGAGGAGAGACAACATACATCTC 59.229 42.308 0.00 0.00 39.38 2.75
2175 2756 6.545666 CACTAGAGGAGAGACAACATACATCT 59.454 42.308 0.00 0.00 0.00 2.90
2176 2757 6.238897 CCACTAGAGGAGAGACAACATACATC 60.239 46.154 0.00 0.00 0.00 3.06
2177 2758 5.596361 CCACTAGAGGAGAGACAACATACAT 59.404 44.000 0.00 0.00 0.00 2.29
2178 2759 4.950475 CCACTAGAGGAGAGACAACATACA 59.050 45.833 0.00 0.00 0.00 2.29
2179 2760 4.951094 ACCACTAGAGGAGAGACAACATAC 59.049 45.833 13.71 0.00 0.00 2.39
2180 2761 4.950475 CACCACTAGAGGAGAGACAACATA 59.050 45.833 13.71 0.00 0.00 2.29
2181 2762 3.766591 CACCACTAGAGGAGAGACAACAT 59.233 47.826 13.71 0.00 0.00 2.71
2182 2763 3.157881 CACCACTAGAGGAGAGACAACA 58.842 50.000 13.71 0.00 0.00 3.33
2183 2764 3.158676 ACACCACTAGAGGAGAGACAAC 58.841 50.000 13.71 0.00 0.00 3.32
2184 2765 3.527507 ACACCACTAGAGGAGAGACAA 57.472 47.619 13.71 0.00 0.00 3.18
2185 2766 3.527507 AACACCACTAGAGGAGAGACA 57.472 47.619 13.71 0.00 0.00 3.41
2186 2767 4.951094 ACATAACACCACTAGAGGAGAGAC 59.049 45.833 13.71 0.00 0.00 3.36
2187 2768 4.950475 CACATAACACCACTAGAGGAGAGA 59.050 45.833 13.71 0.00 0.00 3.10
2188 2769 4.950475 TCACATAACACCACTAGAGGAGAG 59.050 45.833 13.71 5.05 0.00 3.20
2189 2770 4.930696 TCACATAACACCACTAGAGGAGA 58.069 43.478 13.71 0.00 0.00 3.71
2190 2771 5.411781 GTTCACATAACACCACTAGAGGAG 58.588 45.833 13.71 7.68 0.00 3.69
2191 2772 4.082408 CGTTCACATAACACCACTAGAGGA 60.082 45.833 13.71 0.00 0.00 3.71
2192 2773 4.174009 CGTTCACATAACACCACTAGAGG 58.826 47.826 4.44 4.44 0.00 3.69
2193 2774 4.806330 ACGTTCACATAACACCACTAGAG 58.194 43.478 0.00 0.00 0.00 2.43
2194 2775 4.614306 CGACGTTCACATAACACCACTAGA 60.614 45.833 0.00 0.00 0.00 2.43
2195 2776 3.606777 CGACGTTCACATAACACCACTAG 59.393 47.826 0.00 0.00 0.00 2.57
2196 2777 3.252944 TCGACGTTCACATAACACCACTA 59.747 43.478 0.00 0.00 0.00 2.74
2197 2778 2.034939 TCGACGTTCACATAACACCACT 59.965 45.455 0.00 0.00 0.00 4.00
2198 2779 2.154389 GTCGACGTTCACATAACACCAC 59.846 50.000 0.00 0.00 0.00 4.16
2199 2780 2.034939 AGTCGACGTTCACATAACACCA 59.965 45.455 10.46 0.00 0.00 4.17
2200 2781 2.669364 AGTCGACGTTCACATAACACC 58.331 47.619 10.46 0.00 0.00 4.16
2201 2782 4.221342 TGTAGTCGACGTTCACATAACAC 58.779 43.478 10.46 0.00 0.00 3.32
2202 2783 4.486574 TGTAGTCGACGTTCACATAACA 57.513 40.909 10.46 2.35 0.00 2.41
2203 2784 5.003214 GTCATGTAGTCGACGTTCACATAAC 59.997 44.000 20.13 15.54 0.00 1.89
2204 2785 5.090757 GTCATGTAGTCGACGTTCACATAA 58.909 41.667 20.13 9.75 0.00 1.90
2205 2786 4.154556 TGTCATGTAGTCGACGTTCACATA 59.845 41.667 20.13 8.92 34.78 2.29
2206 2787 3.057806 TGTCATGTAGTCGACGTTCACAT 60.058 43.478 10.46 14.61 34.78 3.21
2207 2788 2.291190 TGTCATGTAGTCGACGTTCACA 59.709 45.455 10.46 13.01 34.78 3.58
2208 2789 2.655474 GTGTCATGTAGTCGACGTTCAC 59.345 50.000 10.46 7.71 34.78 3.18
2209 2790 2.551032 AGTGTCATGTAGTCGACGTTCA 59.449 45.455 10.46 10.98 34.78 3.18
2210 2791 3.198863 AGTGTCATGTAGTCGACGTTC 57.801 47.619 10.46 5.38 34.78 3.95
2211 2792 3.004002 TGAAGTGTCATGTAGTCGACGTT 59.996 43.478 10.46 0.00 34.78 3.99
2212 2793 2.551032 TGAAGTGTCATGTAGTCGACGT 59.449 45.455 10.46 1.19 34.78 4.34
2213 2794 2.909244 GTGAAGTGTCATGTAGTCGACG 59.091 50.000 10.46 0.00 35.80 5.12
2214 2795 3.243336 GGTGAAGTGTCATGTAGTCGAC 58.757 50.000 7.70 7.70 35.80 4.20
2215 2796 2.888414 TGGTGAAGTGTCATGTAGTCGA 59.112 45.455 0.00 0.00 35.80 4.20
2216 2797 3.297830 TGGTGAAGTGTCATGTAGTCG 57.702 47.619 0.00 0.00 35.80 4.18
2217 2798 7.849804 AATAATGGTGAAGTGTCATGTAGTC 57.150 36.000 0.00 0.00 35.80 2.59
2218 2799 7.121168 CCAAATAATGGTGAAGTGTCATGTAGT 59.879 37.037 0.00 0.00 44.85 2.73
2219 2800 7.475015 CCAAATAATGGTGAAGTGTCATGTAG 58.525 38.462 0.00 0.00 44.85 2.74
2220 2801 7.389803 CCAAATAATGGTGAAGTGTCATGTA 57.610 36.000 0.00 0.00 44.85 2.29
2221 2802 6.271488 CCAAATAATGGTGAAGTGTCATGT 57.729 37.500 0.00 0.00 44.85 3.21
2235 2816 4.401925 CCTTCCTCTAGGCCCAAATAATG 58.598 47.826 0.00 0.00 34.44 1.90
2236 2817 4.731313 CCTTCCTCTAGGCCCAAATAAT 57.269 45.455 0.00 0.00 34.44 1.28
2246 2827 0.475906 CCCCAATGCCTTCCTCTAGG 59.524 60.000 0.00 0.00 38.40 3.02
2247 2828 1.419387 CTCCCCAATGCCTTCCTCTAG 59.581 57.143 0.00 0.00 0.00 2.43
2248 2829 1.274416 ACTCCCCAATGCCTTCCTCTA 60.274 52.381 0.00 0.00 0.00 2.43
2249 2830 0.551131 ACTCCCCAATGCCTTCCTCT 60.551 55.000 0.00 0.00 0.00 3.69
2250 2831 1.213296 TACTCCCCAATGCCTTCCTC 58.787 55.000 0.00 0.00 0.00 3.71
2251 2832 1.681229 TTACTCCCCAATGCCTTCCT 58.319 50.000 0.00 0.00 0.00 3.36
2252 2833 2.755952 ATTACTCCCCAATGCCTTCC 57.244 50.000 0.00 0.00 0.00 3.46
2253 2834 4.793201 ACTTATTACTCCCCAATGCCTTC 58.207 43.478 0.00 0.00 0.00 3.46
2254 2835 4.881157 ACTTATTACTCCCCAATGCCTT 57.119 40.909 0.00 0.00 0.00 4.35
2255 2836 5.224441 TCTACTTATTACTCCCCAATGCCT 58.776 41.667 0.00 0.00 0.00 4.75
2256 2837 5.562298 TCTACTTATTACTCCCCAATGCC 57.438 43.478 0.00 0.00 0.00 4.40
2257 2838 6.769512 TCATCTACTTATTACTCCCCAATGC 58.230 40.000 0.00 0.00 0.00 3.56
2258 2839 7.826252 CCATCATCTACTTATTACTCCCCAATG 59.174 40.741 0.00 0.00 0.00 2.82
2259 2840 7.037297 CCCATCATCTACTTATTACTCCCCAAT 60.037 40.741 0.00 0.00 0.00 3.16
2260 2841 6.272324 CCCATCATCTACTTATTACTCCCCAA 59.728 42.308 0.00 0.00 0.00 4.12
2261 2842 5.785423 CCCATCATCTACTTATTACTCCCCA 59.215 44.000 0.00 0.00 0.00 4.96
2262 2843 5.785940 ACCCATCATCTACTTATTACTCCCC 59.214 44.000 0.00 0.00 0.00 4.81
2263 2844 6.936968 ACCCATCATCTACTTATTACTCCC 57.063 41.667 0.00 0.00 0.00 4.30
2264 2845 6.651225 GCAACCCATCATCTACTTATTACTCC 59.349 42.308 0.00 0.00 0.00 3.85
2265 2846 7.445945 AGCAACCCATCATCTACTTATTACTC 58.554 38.462 0.00 0.00 0.00 2.59
2266 2847 7.380423 AGCAACCCATCATCTACTTATTACT 57.620 36.000 0.00 0.00 0.00 2.24
2267 2848 8.585881 TCTAGCAACCCATCATCTACTTATTAC 58.414 37.037 0.00 0.00 0.00 1.89
2268 2849 8.721133 TCTAGCAACCCATCATCTACTTATTA 57.279 34.615 0.00 0.00 0.00 0.98
2269 2850 7.291182 ACTCTAGCAACCCATCATCTACTTATT 59.709 37.037 0.00 0.00 0.00 1.40
2270 2851 6.784969 ACTCTAGCAACCCATCATCTACTTAT 59.215 38.462 0.00 0.00 0.00 1.73
2271 2852 6.040955 CACTCTAGCAACCCATCATCTACTTA 59.959 42.308 0.00 0.00 0.00 2.24
2272 2853 4.965532 ACTCTAGCAACCCATCATCTACTT 59.034 41.667 0.00 0.00 0.00 2.24
2273 2854 4.343526 CACTCTAGCAACCCATCATCTACT 59.656 45.833 0.00 0.00 0.00 2.57
2274 2855 4.342378 TCACTCTAGCAACCCATCATCTAC 59.658 45.833 0.00 0.00 0.00 2.59
2275 2856 4.342378 GTCACTCTAGCAACCCATCATCTA 59.658 45.833 0.00 0.00 0.00 1.98
2276 2857 3.133721 GTCACTCTAGCAACCCATCATCT 59.866 47.826 0.00 0.00 0.00 2.90
2277 2858 3.118629 TGTCACTCTAGCAACCCATCATC 60.119 47.826 0.00 0.00 0.00 2.92
2278 2859 2.840038 TGTCACTCTAGCAACCCATCAT 59.160 45.455 0.00 0.00 0.00 2.45
2279 2860 2.234661 CTGTCACTCTAGCAACCCATCA 59.765 50.000 0.00 0.00 0.00 3.07
2280 2861 2.497675 TCTGTCACTCTAGCAACCCATC 59.502 50.000 0.00 0.00 0.00 3.51
2281 2862 2.540383 TCTGTCACTCTAGCAACCCAT 58.460 47.619 0.00 0.00 0.00 4.00
2282 2863 2.009681 TCTGTCACTCTAGCAACCCA 57.990 50.000 0.00 0.00 0.00 4.51
2283 2864 2.933056 GCTTCTGTCACTCTAGCAACCC 60.933 54.545 0.00 0.00 0.00 4.11
2284 2865 2.028567 AGCTTCTGTCACTCTAGCAACC 60.029 50.000 0.00 0.00 34.37 3.77
2285 2866 3.311486 AGCTTCTGTCACTCTAGCAAC 57.689 47.619 0.00 0.00 34.37 4.17
2286 2867 5.468540 TTAAGCTTCTGTCACTCTAGCAA 57.531 39.130 0.00 0.00 34.37 3.91
2287 2868 5.230942 GTTTAAGCTTCTGTCACTCTAGCA 58.769 41.667 0.00 0.00 34.37 3.49
2288 2869 4.627900 GGTTTAAGCTTCTGTCACTCTAGC 59.372 45.833 0.00 0.00 0.00 3.42
2289 2870 5.046950 AGGGTTTAAGCTTCTGTCACTCTAG 60.047 44.000 0.00 0.00 0.00 2.43
2290 2871 4.838986 AGGGTTTAAGCTTCTGTCACTCTA 59.161 41.667 0.00 0.00 0.00 2.43
2291 2872 3.648545 AGGGTTTAAGCTTCTGTCACTCT 59.351 43.478 0.00 0.00 0.00 3.24
2292 2873 4.009370 AGGGTTTAAGCTTCTGTCACTC 57.991 45.455 0.00 0.00 0.00 3.51
2293 2874 4.593634 ACTAGGGTTTAAGCTTCTGTCACT 59.406 41.667 0.00 1.47 0.00 3.41
2294 2875 4.895961 ACTAGGGTTTAAGCTTCTGTCAC 58.104 43.478 0.00 0.00 0.00 3.67
2295 2876 5.562298 AACTAGGGTTTAAGCTTCTGTCA 57.438 39.130 0.00 0.00 30.55 3.58
2296 2877 7.975750 CATAAACTAGGGTTTAAGCTTCTGTC 58.024 38.462 0.00 0.00 46.64 3.51
2297 2878 7.923414 CATAAACTAGGGTTTAAGCTTCTGT 57.077 36.000 0.00 0.00 46.64 3.41
2304 2885 5.123344 AGCAACGCATAAACTAGGGTTTAAG 59.877 40.000 5.61 3.31 46.64 1.85
2305 2886 5.005094 AGCAACGCATAAACTAGGGTTTAA 58.995 37.500 5.61 0.00 46.64 1.52
2307 2888 3.418047 AGCAACGCATAAACTAGGGTTT 58.582 40.909 0.00 0.00 46.06 3.27
2308 2889 3.067684 AGCAACGCATAAACTAGGGTT 57.932 42.857 0.00 0.00 40.88 4.11
2309 2890 2.781681 AGCAACGCATAAACTAGGGT 57.218 45.000 0.00 0.00 0.00 4.34
2310 2891 2.030457 CGAAGCAACGCATAAACTAGGG 59.970 50.000 0.00 0.00 0.00 3.53
2311 2892 2.671396 ACGAAGCAACGCATAAACTAGG 59.329 45.455 0.00 0.00 36.70 3.02
2312 2893 3.991605 ACGAAGCAACGCATAAACTAG 57.008 42.857 0.00 0.00 36.70 2.57
2313 2894 4.327898 CCTTACGAAGCAACGCATAAACTA 59.672 41.667 0.00 0.00 36.70 2.24
2314 2895 3.124636 CCTTACGAAGCAACGCATAAACT 59.875 43.478 0.00 0.00 36.70 2.66
2315 2896 3.413558 CCTTACGAAGCAACGCATAAAC 58.586 45.455 0.00 0.00 36.70 2.01
2316 2897 2.417239 CCCTTACGAAGCAACGCATAAA 59.583 45.455 0.00 0.00 36.70 1.40
2317 2898 2.004017 CCCTTACGAAGCAACGCATAA 58.996 47.619 0.00 0.00 36.70 1.90
2318 2899 1.647346 CCCTTACGAAGCAACGCATA 58.353 50.000 0.00 0.00 36.70 3.14
2319 2900 1.024579 CCCCTTACGAAGCAACGCAT 61.025 55.000 0.00 0.00 36.70 4.73
2320 2901 1.669760 CCCCTTACGAAGCAACGCA 60.670 57.895 0.00 0.00 36.70 5.24
2321 2902 3.035576 GCCCCTTACGAAGCAACGC 62.036 63.158 0.00 0.00 36.70 4.84
2322 2903 1.375523 AGCCCCTTACGAAGCAACG 60.376 57.895 0.00 1.28 39.31 4.10
2323 2904 0.321298 TCAGCCCCTTACGAAGCAAC 60.321 55.000 0.00 0.00 0.00 4.17
2324 2905 0.618458 ATCAGCCCCTTACGAAGCAA 59.382 50.000 0.00 0.00 0.00 3.91
2325 2906 0.618458 AATCAGCCCCTTACGAAGCA 59.382 50.000 0.00 0.00 0.00 3.91
2326 2907 1.401905 CAAATCAGCCCCTTACGAAGC 59.598 52.381 0.00 0.00 0.00 3.86
2327 2908 2.017049 CCAAATCAGCCCCTTACGAAG 58.983 52.381 0.00 0.00 0.00 3.79
2328 2909 1.631388 TCCAAATCAGCCCCTTACGAA 59.369 47.619 0.00 0.00 0.00 3.85
2329 2910 1.281419 TCCAAATCAGCCCCTTACGA 58.719 50.000 0.00 0.00 0.00 3.43
2330 2911 2.222027 GATCCAAATCAGCCCCTTACG 58.778 52.381 0.00 0.00 31.76 3.18
2331 2912 2.091885 TGGATCCAAATCAGCCCCTTAC 60.092 50.000 13.46 0.00 33.21 2.34
2332 2913 2.213310 TGGATCCAAATCAGCCCCTTA 58.787 47.619 13.46 0.00 33.21 2.69
2333 2914 1.009997 TGGATCCAAATCAGCCCCTT 58.990 50.000 13.46 0.00 33.21 3.95
2334 2915 1.238615 ATGGATCCAAATCAGCCCCT 58.761 50.000 20.67 0.00 33.21 4.79
2335 2916 3.856774 ATGGATCCAAATCAGCCCC 57.143 52.632 20.67 0.00 33.21 5.80



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.