Multiple sequence alignment - TraesCS3A01G197400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G197400 chr3A 100.000 1372 0 0 1001 2372 308674350 308675721 0.000000e+00 2534.0
1 TraesCS3A01G197400 chr3A 100.000 617 0 0 1 617 308673350 308673966 0.000000e+00 1140.0
2 TraesCS3A01G197400 chr3A 94.444 36 1 1 93 127 682774326 682774361 1.000000e-03 54.7
3 TraesCS3A01G197400 chr3D 94.360 851 35 9 1012 1853 363854795 363853949 0.000000e+00 1293.0
4 TraesCS3A01G197400 chr3D 93.448 870 40 10 1001 1856 486147142 486146276 0.000000e+00 1275.0
5 TraesCS3A01G197400 chr3D 93.203 868 41 9 1001 1853 124070439 124071303 0.000000e+00 1260.0
6 TraesCS3A01G197400 chr3D 92.517 294 17 2 279 571 486147830 486147541 1.310000e-112 416.0
7 TraesCS3A01G197400 chr5B 93.387 862 47 8 1001 1853 56361596 56362456 0.000000e+00 1267.0
8 TraesCS3A01G197400 chr5B 93.056 864 46 9 1001 1851 517572250 517571388 0.000000e+00 1251.0
9 TraesCS3A01G197400 chr5B 92.459 862 50 8 1001 1853 297042283 297043138 0.000000e+00 1218.0
10 TraesCS3A01G197400 chr5B 89.583 336 31 2 280 615 517573188 517572857 7.840000e-115 424.0
11 TraesCS3A01G197400 chr7A 92.923 862 49 8 1001 1853 700256763 700257621 0.000000e+00 1243.0
12 TraesCS3A01G197400 chr5D 92.791 860 47 9 1001 1851 397098298 397099151 0.000000e+00 1230.0
13 TraesCS3A01G197400 chr5D 91.514 436 18 7 1926 2357 125966258 125966678 1.220000e-162 582.0
14 TraesCS3A01G197400 chr5D 91.124 338 29 1 279 616 497306137 497305801 7.730000e-125 457.0
15 TraesCS3A01G197400 chr5D 90.828 338 31 0 279 616 53755587 53755924 1.000000e-123 453.0
16 TraesCS3A01G197400 chr5D 91.022 323 28 1 279 601 359546434 359546755 3.620000e-118 435.0
17 TraesCS3A01G197400 chr4D 92.193 871 47 12 1001 1851 503905598 503906467 0.000000e+00 1212.0
18 TraesCS3A01G197400 chr3B 98.218 449 6 2 1926 2372 342861248 342861696 0.000000e+00 784.0
19 TraesCS3A01G197400 chrUn 90.855 339 31 0 279 617 470687622 470687960 2.780000e-124 455.0
20 TraesCS3A01G197400 chrUn 91.250 320 28 0 279 598 427412141 427412460 1.010000e-118 436.0
21 TraesCS3A01G197400 chr7D 90.365 301 28 1 279 579 549747872 549747573 6.140000e-106 394.0
22 TraesCS3A01G197400 chr2D 87.725 334 37 1 281 614 70817525 70817196 1.030000e-103 387.0
23 TraesCS3A01G197400 chr2D 85.294 68 9 1 93 159 381219730 381219797 4.230000e-08 69.4
24 TraesCS3A01G197400 chr4B 89.423 104 8 3 59 159 40959863 40959760 6.880000e-26 128.0
25 TraesCS3A01G197400 chr4B 96.875 32 0 1 176 206 272631498 272631529 4.000000e-03 52.8
26 TraesCS3A01G197400 chr2B 86.957 69 8 1 94 161 448076802 448076870 2.530000e-10 76.8
27 TraesCS3A01G197400 chr6D 83.333 72 8 4 94 163 441675729 441675798 1.970000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G197400 chr3A 308673350 308675721 2371 False 1837.0 2534 100.0000 1 2372 2 chr3A.!!$F2 2371
1 TraesCS3A01G197400 chr3D 363853949 363854795 846 True 1293.0 1293 94.3600 1012 1853 1 chr3D.!!$R1 841
2 TraesCS3A01G197400 chr3D 124070439 124071303 864 False 1260.0 1260 93.2030 1001 1853 1 chr3D.!!$F1 852
3 TraesCS3A01G197400 chr3D 486146276 486147830 1554 True 845.5 1275 92.9825 279 1856 2 chr3D.!!$R2 1577
4 TraesCS3A01G197400 chr5B 56361596 56362456 860 False 1267.0 1267 93.3870 1001 1853 1 chr5B.!!$F1 852
5 TraesCS3A01G197400 chr5B 297042283 297043138 855 False 1218.0 1218 92.4590 1001 1853 1 chr5B.!!$F2 852
6 TraesCS3A01G197400 chr5B 517571388 517573188 1800 True 837.5 1251 91.3195 280 1851 2 chr5B.!!$R1 1571
7 TraesCS3A01G197400 chr7A 700256763 700257621 858 False 1243.0 1243 92.9230 1001 1853 1 chr7A.!!$F1 852
8 TraesCS3A01G197400 chr5D 397098298 397099151 853 False 1230.0 1230 92.7910 1001 1851 1 chr5D.!!$F4 850
9 TraesCS3A01G197400 chr4D 503905598 503906467 869 False 1212.0 1212 92.1930 1001 1851 1 chr4D.!!$F1 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.110238 CAAACACGGAAGCGGACATG 60.11 55.0 0.0 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 2190 0.107017 CCTTCCCTGCCACCTGTATG 60.107 60.0 0.0 0.0 0.0 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.307760 AAAAACGAGTCAAGCCAGCG 59.692 50.000 0.00 0.00 0.00 5.18
46 47 1.507141 AAAACGAGTCAAGCCAGCGG 61.507 55.000 0.00 0.00 0.00 5.52
64 65 2.735478 CGCGTACGCTGACCCAAA 60.735 61.111 34.69 0.00 39.32 3.28
65 66 2.858158 GCGTACGCTGACCCAAAC 59.142 61.111 31.95 0.00 38.26 2.93
66 67 1.957186 GCGTACGCTGACCCAAACA 60.957 57.895 31.95 0.00 38.26 2.83
67 68 1.857364 CGTACGCTGACCCAAACAC 59.143 57.895 0.52 0.00 0.00 3.32
68 69 1.857364 GTACGCTGACCCAAACACG 59.143 57.895 0.00 0.00 0.00 4.49
69 70 1.301087 TACGCTGACCCAAACACGG 60.301 57.895 0.00 0.00 0.00 4.94
70 71 1.746322 TACGCTGACCCAAACACGGA 61.746 55.000 0.00 0.00 0.00 4.69
71 72 1.890041 CGCTGACCCAAACACGGAA 60.890 57.895 0.00 0.00 0.00 4.30
72 73 1.841663 CGCTGACCCAAACACGGAAG 61.842 60.000 0.00 0.00 0.00 3.46
73 74 1.949257 CTGACCCAAACACGGAAGC 59.051 57.895 0.00 0.00 0.00 3.86
74 75 1.841663 CTGACCCAAACACGGAAGCG 61.842 60.000 0.00 0.00 0.00 4.68
75 76 2.593436 ACCCAAACACGGAAGCGG 60.593 61.111 0.00 0.00 0.00 5.52
76 77 2.281208 CCCAAACACGGAAGCGGA 60.281 61.111 0.00 0.00 0.00 5.54
77 78 2.613506 CCCAAACACGGAAGCGGAC 61.614 63.158 0.00 0.00 0.00 4.79
78 79 1.890041 CCAAACACGGAAGCGGACA 60.890 57.895 0.00 0.00 0.00 4.02
79 80 1.234615 CCAAACACGGAAGCGGACAT 61.235 55.000 0.00 0.00 0.00 3.06
80 81 0.110238 CAAACACGGAAGCGGACATG 60.110 55.000 0.00 0.00 0.00 3.21
81 82 1.234615 AAACACGGAAGCGGACATGG 61.235 55.000 0.00 0.00 0.00 3.66
82 83 2.819595 CACGGAAGCGGACATGGG 60.820 66.667 0.00 0.00 0.00 4.00
83 84 3.319198 ACGGAAGCGGACATGGGT 61.319 61.111 0.00 0.00 0.00 4.51
84 85 2.819595 CGGAAGCGGACATGGGTG 60.820 66.667 0.00 0.00 0.00 4.61
85 86 2.351276 GGAAGCGGACATGGGTGT 59.649 61.111 0.00 0.00 42.49 4.16
93 94 4.033776 ACATGGGTGTCTGCCGGG 62.034 66.667 2.18 0.00 31.41 5.73
112 113 3.878160 GGCCGACCCAAATGAATAAAA 57.122 42.857 0.00 0.00 0.00 1.52
113 114 4.195225 GGCCGACCCAAATGAATAAAAA 57.805 40.909 0.00 0.00 0.00 1.94
114 115 3.930229 GGCCGACCCAAATGAATAAAAAC 59.070 43.478 0.00 0.00 0.00 2.43
115 116 3.610677 GCCGACCCAAATGAATAAAAACG 59.389 43.478 0.00 0.00 0.00 3.60
116 117 4.170256 CCGACCCAAATGAATAAAAACGG 58.830 43.478 0.00 0.00 0.00 4.44
117 118 4.082679 CCGACCCAAATGAATAAAAACGGA 60.083 41.667 0.00 0.00 38.09 4.69
118 119 4.854839 CGACCCAAATGAATAAAAACGGAC 59.145 41.667 0.00 0.00 0.00 4.79
119 120 5.563085 CGACCCAAATGAATAAAAACGGACA 60.563 40.000 0.00 0.00 0.00 4.02
120 121 6.163135 ACCCAAATGAATAAAAACGGACAA 57.837 33.333 0.00 0.00 0.00 3.18
121 122 6.583562 ACCCAAATGAATAAAAACGGACAAA 58.416 32.000 0.00 0.00 0.00 2.83
122 123 7.048512 ACCCAAATGAATAAAAACGGACAAAA 58.951 30.769 0.00 0.00 0.00 2.44
123 124 7.717436 ACCCAAATGAATAAAAACGGACAAAAT 59.283 29.630 0.00 0.00 0.00 1.82
124 125 8.227119 CCCAAATGAATAAAAACGGACAAAATC 58.773 33.333 0.00 0.00 0.00 2.17
125 126 8.768955 CCAAATGAATAAAAACGGACAAAATCA 58.231 29.630 0.00 0.00 0.00 2.57
126 127 9.579610 CAAATGAATAAAAACGGACAAAATCAC 57.420 29.630 0.00 0.00 0.00 3.06
127 128 9.541143 AAATGAATAAAAACGGACAAAATCACT 57.459 25.926 0.00 0.00 0.00 3.41
130 131 9.834628 TGAATAAAAACGGACAAAATCACTATC 57.165 29.630 0.00 0.00 0.00 2.08
131 132 9.285770 GAATAAAAACGGACAAAATCACTATCC 57.714 33.333 0.00 0.00 0.00 2.59
135 136 4.939509 CGGACAAAATCACTATCCGTTT 57.060 40.909 2.85 0.00 45.73 3.60
136 137 4.647964 CGGACAAAATCACTATCCGTTTG 58.352 43.478 2.85 0.00 45.73 2.93
137 138 4.436852 CGGACAAAATCACTATCCGTTTGG 60.437 45.833 2.85 0.00 45.73 3.28
138 139 4.457949 GGACAAAATCACTATCCGTTTGGT 59.542 41.667 0.00 0.00 34.28 3.67
139 140 5.391629 GGACAAAATCACTATCCGTTTGGTC 60.392 44.000 0.00 0.00 35.00 4.02
140 141 4.153475 ACAAAATCACTATCCGTTTGGTCG 59.847 41.667 0.00 0.00 34.28 4.79
147 148 3.732892 CCGTTTGGTCGGCGCATT 61.733 61.111 10.83 0.00 43.96 3.56
148 149 2.501650 CGTTTGGTCGGCGCATTG 60.502 61.111 10.83 0.00 0.00 2.82
149 150 2.126502 GTTTGGTCGGCGCATTGG 60.127 61.111 10.83 0.00 0.00 3.16
150 151 2.281831 TTTGGTCGGCGCATTGGA 60.282 55.556 10.83 0.00 0.00 3.53
151 152 2.331893 TTTGGTCGGCGCATTGGAG 61.332 57.895 10.83 0.00 0.00 3.86
152 153 3.545124 TTGGTCGGCGCATTGGAGT 62.545 57.895 10.83 0.00 0.00 3.85
153 154 2.746277 GGTCGGCGCATTGGAGTT 60.746 61.111 10.83 0.00 0.00 3.01
154 155 2.480555 GTCGGCGCATTGGAGTTG 59.519 61.111 10.83 0.00 0.00 3.16
155 156 3.430862 TCGGCGCATTGGAGTTGC 61.431 61.111 10.83 0.00 36.74 4.17
156 157 3.434319 CGGCGCATTGGAGTTGCT 61.434 61.111 10.83 0.00 37.96 3.91
157 158 2.486966 GGCGCATTGGAGTTGCTC 59.513 61.111 10.83 0.00 37.96 4.26
158 159 2.042831 GGCGCATTGGAGTTGCTCT 61.043 57.895 10.83 0.00 37.96 4.09
159 160 1.589716 GGCGCATTGGAGTTGCTCTT 61.590 55.000 10.83 0.00 37.96 2.85
160 161 1.086696 GCGCATTGGAGTTGCTCTTA 58.913 50.000 0.30 0.00 37.96 2.10
161 162 1.468520 GCGCATTGGAGTTGCTCTTAA 59.531 47.619 0.30 0.00 37.96 1.85
162 163 2.098117 GCGCATTGGAGTTGCTCTTAAT 59.902 45.455 0.30 0.00 37.96 1.40
163 164 3.312421 GCGCATTGGAGTTGCTCTTAATA 59.688 43.478 0.30 0.00 37.96 0.98
164 165 4.201910 GCGCATTGGAGTTGCTCTTAATAA 60.202 41.667 0.30 0.00 37.96 1.40
165 166 5.676079 GCGCATTGGAGTTGCTCTTAATAAA 60.676 40.000 0.30 0.00 37.96 1.40
166 167 6.498304 CGCATTGGAGTTGCTCTTAATAAAT 58.502 36.000 0.00 0.00 37.96 1.40
167 168 7.639039 CGCATTGGAGTTGCTCTTAATAAATA 58.361 34.615 0.00 0.00 37.96 1.40
168 169 8.292448 CGCATTGGAGTTGCTCTTAATAAATAT 58.708 33.333 0.00 0.00 37.96 1.28
169 170 9.403110 GCATTGGAGTTGCTCTTAATAAATATG 57.597 33.333 0.00 0.00 37.14 1.78
170 171 9.403110 CATTGGAGTTGCTCTTAATAAATATGC 57.597 33.333 0.00 0.00 0.00 3.14
171 172 8.518430 TTGGAGTTGCTCTTAATAAATATGCA 57.482 30.769 0.00 0.00 0.00 3.96
172 173 8.518430 TGGAGTTGCTCTTAATAAATATGCAA 57.482 30.769 0.00 0.00 36.74 4.08
173 174 9.135189 TGGAGTTGCTCTTAATAAATATGCAAT 57.865 29.630 0.00 0.00 40.29 3.56
174 175 9.971922 GGAGTTGCTCTTAATAAATATGCAATT 57.028 29.630 0.00 0.00 40.29 2.32
192 193 8.654485 ATGCAATTTATATTATTGAGAGGCCA 57.346 30.769 5.01 0.00 35.49 5.36
193 194 8.476064 TGCAATTTATATTATTGAGAGGCCAA 57.524 30.769 5.01 0.00 35.49 4.52
194 195 8.922237 TGCAATTTATATTATTGAGAGGCCAAA 58.078 29.630 5.01 0.00 35.49 3.28
195 196 9.415544 GCAATTTATATTATTGAGAGGCCAAAG 57.584 33.333 5.01 0.00 35.49 2.77
196 197 9.415544 CAATTTATATTATTGAGAGGCCAAAGC 57.584 33.333 5.01 0.00 35.49 3.51
208 209 2.314323 GCCAAAGCCAACATTATGGG 57.686 50.000 0.00 0.00 41.01 4.00
213 214 3.205815 GCCAACATTATGGGCTGGA 57.794 52.632 12.43 0.00 44.32 3.86
214 215 1.035139 GCCAACATTATGGGCTGGAG 58.965 55.000 12.43 0.00 44.32 3.86
215 216 1.696063 CCAACATTATGGGCTGGAGG 58.304 55.000 0.00 0.00 36.79 4.30
216 217 1.696063 CAACATTATGGGCTGGAGGG 58.304 55.000 0.00 0.00 0.00 4.30
217 218 1.215173 CAACATTATGGGCTGGAGGGA 59.785 52.381 0.00 0.00 0.00 4.20
218 219 1.143813 ACATTATGGGCTGGAGGGAG 58.856 55.000 0.00 0.00 0.00 4.30
219 220 1.143813 CATTATGGGCTGGAGGGAGT 58.856 55.000 0.00 0.00 0.00 3.85
220 221 2.338809 CATTATGGGCTGGAGGGAGTA 58.661 52.381 0.00 0.00 0.00 2.59
221 222 1.802553 TTATGGGCTGGAGGGAGTAC 58.197 55.000 0.00 0.00 0.00 2.73
222 223 0.639943 TATGGGCTGGAGGGAGTACA 59.360 55.000 0.00 0.00 0.00 2.90
223 224 0.253160 ATGGGCTGGAGGGAGTACAA 60.253 55.000 0.00 0.00 0.00 2.41
224 225 0.474854 TGGGCTGGAGGGAGTACAAA 60.475 55.000 0.00 0.00 0.00 2.83
225 226 0.696501 GGGCTGGAGGGAGTACAAAA 59.303 55.000 0.00 0.00 0.00 2.44
226 227 1.340114 GGGCTGGAGGGAGTACAAAAG 60.340 57.143 0.00 0.00 0.00 2.27
227 228 1.628846 GGCTGGAGGGAGTACAAAAGA 59.371 52.381 0.00 0.00 0.00 2.52
228 229 2.039879 GGCTGGAGGGAGTACAAAAGAA 59.960 50.000 0.00 0.00 0.00 2.52
229 230 3.308473 GGCTGGAGGGAGTACAAAAGAAT 60.308 47.826 0.00 0.00 0.00 2.40
230 231 3.691609 GCTGGAGGGAGTACAAAAGAATG 59.308 47.826 0.00 0.00 0.00 2.67
231 232 4.807643 GCTGGAGGGAGTACAAAAGAATGT 60.808 45.833 0.00 0.00 37.32 2.71
232 233 4.906618 TGGAGGGAGTACAAAAGAATGTC 58.093 43.478 0.00 0.00 34.75 3.06
233 234 4.349636 TGGAGGGAGTACAAAAGAATGTCA 59.650 41.667 0.00 0.00 34.75 3.58
234 235 5.163141 TGGAGGGAGTACAAAAGAATGTCAA 60.163 40.000 0.00 0.00 34.75 3.18
235 236 5.768164 GGAGGGAGTACAAAAGAATGTCAAA 59.232 40.000 0.00 0.00 34.75 2.69
236 237 6.264518 GGAGGGAGTACAAAAGAATGTCAAAA 59.735 38.462 0.00 0.00 34.75 2.44
237 238 7.277174 AGGGAGTACAAAAGAATGTCAAAAG 57.723 36.000 0.00 0.00 34.75 2.27
238 239 7.060421 AGGGAGTACAAAAGAATGTCAAAAGA 58.940 34.615 0.00 0.00 34.75 2.52
239 240 7.229506 AGGGAGTACAAAAGAATGTCAAAAGAG 59.770 37.037 0.00 0.00 34.75 2.85
240 241 7.013369 GGGAGTACAAAAGAATGTCAAAAGAGT 59.987 37.037 0.00 0.00 34.75 3.24
241 242 9.052759 GGAGTACAAAAGAATGTCAAAAGAGTA 57.947 33.333 0.00 0.00 34.75 2.59
243 244 9.832445 AGTACAAAAGAATGTCAAAAGAGTAGA 57.168 29.630 0.00 0.00 34.75 2.59
246 247 9.956720 ACAAAAGAATGTCAAAAGAGTAGAATG 57.043 29.630 0.00 0.00 0.00 2.67
247 248 8.909671 CAAAAGAATGTCAAAAGAGTAGAATGC 58.090 33.333 0.00 0.00 0.00 3.56
248 249 7.750229 AAGAATGTCAAAAGAGTAGAATGCA 57.250 32.000 0.00 0.00 0.00 3.96
249 250 7.750229 AGAATGTCAAAAGAGTAGAATGCAA 57.250 32.000 0.00 0.00 0.00 4.08
250 251 8.169977 AGAATGTCAAAAGAGTAGAATGCAAA 57.830 30.769 0.00 0.00 0.00 3.68
251 252 8.632679 AGAATGTCAAAAGAGTAGAATGCAAAA 58.367 29.630 0.00 0.00 0.00 2.44
252 253 8.807667 AATGTCAAAAGAGTAGAATGCAAAAG 57.192 30.769 0.00 0.00 0.00 2.27
253 254 6.738114 TGTCAAAAGAGTAGAATGCAAAAGG 58.262 36.000 0.00 0.00 0.00 3.11
254 255 6.321181 TGTCAAAAGAGTAGAATGCAAAAGGT 59.679 34.615 0.00 0.00 0.00 3.50
255 256 7.500892 TGTCAAAAGAGTAGAATGCAAAAGGTA 59.499 33.333 0.00 0.00 0.00 3.08
256 257 8.349983 GTCAAAAGAGTAGAATGCAAAAGGTAA 58.650 33.333 0.00 0.00 0.00 2.85
257 258 8.908903 TCAAAAGAGTAGAATGCAAAAGGTAAA 58.091 29.630 0.00 0.00 0.00 2.01
258 259 9.528018 CAAAAGAGTAGAATGCAAAAGGTAAAA 57.472 29.630 0.00 0.00 0.00 1.52
260 261 9.750125 AAAGAGTAGAATGCAAAAGGTAAAAAG 57.250 29.630 0.00 0.00 0.00 2.27
261 262 8.691661 AGAGTAGAATGCAAAAGGTAAAAAGA 57.308 30.769 0.00 0.00 0.00 2.52
262 263 8.568794 AGAGTAGAATGCAAAAGGTAAAAAGAC 58.431 33.333 0.00 0.00 0.00 3.01
263 264 8.232913 AGTAGAATGCAAAAGGTAAAAAGACA 57.767 30.769 0.00 0.00 0.00 3.41
264 265 8.860088 AGTAGAATGCAAAAGGTAAAAAGACAT 58.140 29.630 0.00 0.00 0.00 3.06
265 266 9.129209 GTAGAATGCAAAAGGTAAAAAGACATC 57.871 33.333 0.00 0.00 0.00 3.06
266 267 7.725251 AGAATGCAAAAGGTAAAAAGACATCA 58.275 30.769 0.00 0.00 0.00 3.07
267 268 7.653311 AGAATGCAAAAGGTAAAAAGACATCAC 59.347 33.333 0.00 0.00 0.00 3.06
268 269 6.463995 TGCAAAAGGTAAAAAGACATCACT 57.536 33.333 0.00 0.00 0.00 3.41
269 270 7.575414 TGCAAAAGGTAAAAAGACATCACTA 57.425 32.000 0.00 0.00 0.00 2.74
270 271 8.001881 TGCAAAAGGTAAAAAGACATCACTAA 57.998 30.769 0.00 0.00 0.00 2.24
271 272 8.637986 TGCAAAAGGTAAAAAGACATCACTAAT 58.362 29.630 0.00 0.00 0.00 1.73
286 287 9.703892 GACATCACTAATATAACTGAGCATCTT 57.296 33.333 0.00 0.00 34.92 2.40
361 362 1.805945 CGCTACTCCAACAGACGGC 60.806 63.158 0.00 0.00 0.00 5.68
392 393 1.468506 AAAAATTGGACCGCGGCCTT 61.469 50.000 30.01 18.90 0.00 4.35
395 396 1.468506 AATTGGACCGCGGCCTTTTT 61.469 50.000 30.01 20.37 0.00 1.94
421 422 0.519519 TAAAATGCAACACCTCGCGG 59.480 50.000 6.13 0.00 0.00 6.46
489 490 3.202001 CGAATGCCGAACCGCCAT 61.202 61.111 0.00 0.00 41.76 4.40
509 510 2.360600 CATTTCCGTTCCCGCCCA 60.361 61.111 0.00 0.00 0.00 5.36
510 511 1.974343 CATTTCCGTTCCCGCCCAA 60.974 57.895 0.00 0.00 0.00 4.12
511 512 1.974875 ATTTCCGTTCCCGCCCAAC 60.975 57.895 0.00 0.00 0.00 3.77
512 513 4.646877 TTCCGTTCCCGCCCAACC 62.647 66.667 0.00 0.00 0.00 3.77
603 608 3.804153 CTGCATCAGATCCGGCGCT 62.804 63.158 7.64 0.00 32.44 5.92
1091 1317 1.658673 GTGTGGAGTTCTCCGACGT 59.341 57.895 13.27 0.00 0.00 4.34
1162 1388 3.740397 CCTACGACGTGGCGGTGA 61.740 66.667 11.56 0.00 35.12 4.02
1271 1501 2.159366 ACATGAAGGAGATCACGACGAC 60.159 50.000 0.00 0.00 30.82 4.34
1307 1543 2.632136 AAGCCGTCGGTTGTCGTCAA 62.632 55.000 13.94 0.00 40.32 3.18
1369 1605 2.406205 GAGCATCCGGAGTACGTCT 58.594 57.895 11.34 0.00 42.24 4.18
1478 1718 2.177016 TGATCCCCATCGAGTCCTCTTA 59.823 50.000 0.00 0.00 0.00 2.10
1536 1788 3.379445 GAGGAGGGGTGCGACGAA 61.379 66.667 0.00 0.00 0.00 3.85
1576 1828 0.246635 GAAGCAGTTCCGTAGCTCCA 59.753 55.000 0.00 0.00 37.70 3.86
1756 2013 7.685481 TCAATTTGGACTATCTGTTGGAGTTA 58.315 34.615 0.00 0.00 0.00 2.24
1758 2015 8.960591 CAATTTGGACTATCTGTTGGAGTTAAT 58.039 33.333 0.00 0.00 0.00 1.40
1789 2046 4.981674 CGGAGCTTCAAAATGCACTTTTTA 59.018 37.500 0.00 0.00 34.80 1.52
1792 2052 6.479990 GGAGCTTCAAAATGCACTTTTTAGTT 59.520 34.615 0.00 0.00 34.80 2.24
1853 2115 7.792374 TGAACCATCTATTGAATGCTCTAAC 57.208 36.000 0.00 0.00 0.00 2.34
1854 2116 7.337938 TGAACCATCTATTGAATGCTCTAACA 58.662 34.615 0.00 0.00 0.00 2.41
1855 2117 7.496920 TGAACCATCTATTGAATGCTCTAACAG 59.503 37.037 0.00 0.00 0.00 3.16
1856 2118 7.129457 ACCATCTATTGAATGCTCTAACAGA 57.871 36.000 0.00 0.00 0.00 3.41
1857 2119 7.215789 ACCATCTATTGAATGCTCTAACAGAG 58.784 38.462 0.00 0.00 45.04 3.35
1858 2120 7.070447 ACCATCTATTGAATGCTCTAACAGAGA 59.930 37.037 7.37 0.00 45.07 3.10
1871 2133 6.019779 TCTAACAGAGAGAACAGAGAAAGC 57.980 41.667 0.00 0.00 0.00 3.51
1872 2134 4.679373 AACAGAGAGAACAGAGAAAGCA 57.321 40.909 0.00 0.00 0.00 3.91
1873 2135 4.679373 ACAGAGAGAACAGAGAAAGCAA 57.321 40.909 0.00 0.00 0.00 3.91
1874 2136 4.630111 ACAGAGAGAACAGAGAAAGCAAG 58.370 43.478 0.00 0.00 0.00 4.01
1875 2137 3.995705 CAGAGAGAACAGAGAAAGCAAGG 59.004 47.826 0.00 0.00 0.00 3.61
1876 2138 3.900601 AGAGAGAACAGAGAAAGCAAGGA 59.099 43.478 0.00 0.00 0.00 3.36
1877 2139 4.346418 AGAGAGAACAGAGAAAGCAAGGAA 59.654 41.667 0.00 0.00 0.00 3.36
1878 2140 5.041191 AGAGAACAGAGAAAGCAAGGAAA 57.959 39.130 0.00 0.00 0.00 3.13
1879 2141 5.440610 AGAGAACAGAGAAAGCAAGGAAAA 58.559 37.500 0.00 0.00 0.00 2.29
1880 2142 5.530543 AGAGAACAGAGAAAGCAAGGAAAAG 59.469 40.000 0.00 0.00 0.00 2.27
1881 2143 5.440610 AGAACAGAGAAAGCAAGGAAAAGA 58.559 37.500 0.00 0.00 0.00 2.52
1882 2144 5.888161 AGAACAGAGAAAGCAAGGAAAAGAA 59.112 36.000 0.00 0.00 0.00 2.52
1883 2145 6.378280 AGAACAGAGAAAGCAAGGAAAAGAAA 59.622 34.615 0.00 0.00 0.00 2.52
1884 2146 6.141560 ACAGAGAAAGCAAGGAAAAGAAAG 57.858 37.500 0.00 0.00 0.00 2.62
1885 2147 5.068329 ACAGAGAAAGCAAGGAAAAGAAAGG 59.932 40.000 0.00 0.00 0.00 3.11
1886 2148 4.038522 AGAGAAAGCAAGGAAAAGAAAGGC 59.961 41.667 0.00 0.00 0.00 4.35
1887 2149 3.070159 AGAAAGCAAGGAAAAGAAAGGCC 59.930 43.478 0.00 0.00 0.00 5.19
1888 2150 2.086610 AGCAAGGAAAAGAAAGGCCA 57.913 45.000 5.01 0.00 0.00 5.36
1889 2151 2.397597 AGCAAGGAAAAGAAAGGCCAA 58.602 42.857 5.01 0.00 0.00 4.52
1890 2152 2.771372 AGCAAGGAAAAGAAAGGCCAAA 59.229 40.909 5.01 0.00 0.00 3.28
1891 2153 2.872245 GCAAGGAAAAGAAAGGCCAAAC 59.128 45.455 5.01 0.00 0.00 2.93
1892 2154 3.466836 CAAGGAAAAGAAAGGCCAAACC 58.533 45.455 5.01 0.00 39.61 3.27
1905 2167 4.164843 GGCCAAACCTATCAACCTATCA 57.835 45.455 0.00 0.00 34.51 2.15
1906 2168 4.532834 GGCCAAACCTATCAACCTATCAA 58.467 43.478 0.00 0.00 34.51 2.57
1907 2169 4.580580 GGCCAAACCTATCAACCTATCAAG 59.419 45.833 0.00 0.00 34.51 3.02
1908 2170 5.437060 GCCAAACCTATCAACCTATCAAGA 58.563 41.667 0.00 0.00 0.00 3.02
1909 2171 5.529060 GCCAAACCTATCAACCTATCAAGAG 59.471 44.000 0.00 0.00 0.00 2.85
1910 2172 6.632672 GCCAAACCTATCAACCTATCAAGAGA 60.633 42.308 0.00 0.00 0.00 3.10
1911 2173 6.989169 CCAAACCTATCAACCTATCAAGAGAG 59.011 42.308 0.00 0.00 0.00 3.20
1912 2174 6.739331 AACCTATCAACCTATCAAGAGAGG 57.261 41.667 9.11 9.11 45.04 3.69
1923 2185 7.311092 CCTATCAAGAGAGGTAGAGACTAGA 57.689 44.000 0.00 0.00 35.17 2.43
1924 2186 7.386851 CCTATCAAGAGAGGTAGAGACTAGAG 58.613 46.154 0.00 0.00 35.17 2.43
1925 2187 7.234782 CCTATCAAGAGAGGTAGAGACTAGAGA 59.765 44.444 0.00 0.00 35.17 3.10
1926 2188 6.479972 TCAAGAGAGGTAGAGACTAGAGAG 57.520 45.833 0.00 0.00 0.00 3.20
1927 2189 6.199376 TCAAGAGAGGTAGAGACTAGAGAGA 58.801 44.000 0.00 0.00 0.00 3.10
1928 2190 6.097839 TCAAGAGAGGTAGAGACTAGAGAGAC 59.902 46.154 0.00 0.00 0.00 3.36
1929 2191 5.525484 AGAGAGGTAGAGACTAGAGAGACA 58.475 45.833 0.00 0.00 0.00 3.41
1930 2192 6.143915 AGAGAGGTAGAGACTAGAGAGACAT 58.856 44.000 0.00 0.00 0.00 3.06
1931 2193 7.302948 AGAGAGGTAGAGACTAGAGAGACATA 58.697 42.308 0.00 0.00 0.00 2.29
1932 2194 7.232941 AGAGAGGTAGAGACTAGAGAGACATAC 59.767 44.444 0.00 0.00 0.00 2.39
1933 2195 6.842280 AGAGGTAGAGACTAGAGAGACATACA 59.158 42.308 0.00 0.00 0.00 2.29
1934 2196 7.015292 AGAGGTAGAGACTAGAGAGACATACAG 59.985 44.444 0.00 0.00 0.00 2.74
1935 2197 6.042781 AGGTAGAGACTAGAGAGACATACAGG 59.957 46.154 0.00 0.00 0.00 4.00
1936 2198 5.968676 AGAGACTAGAGAGACATACAGGT 57.031 43.478 0.00 0.00 0.00 4.00
1937 2199 5.680619 AGAGACTAGAGAGACATACAGGTG 58.319 45.833 0.00 0.00 0.00 4.00
1938 2200 4.787551 AGACTAGAGAGACATACAGGTGG 58.212 47.826 0.00 0.00 0.00 4.61
1939 2201 3.292460 ACTAGAGAGACATACAGGTGGC 58.708 50.000 0.00 0.00 0.00 5.01
1940 2202 2.238084 AGAGAGACATACAGGTGGCA 57.762 50.000 0.00 0.00 0.00 4.92
1941 2203 2.106566 AGAGAGACATACAGGTGGCAG 58.893 52.381 0.00 0.00 0.00 4.85
1942 2204 1.137872 GAGAGACATACAGGTGGCAGG 59.862 57.143 0.00 0.00 0.00 4.85
1943 2205 0.179000 GAGACATACAGGTGGCAGGG 59.821 60.000 0.00 0.00 0.00 4.45
1944 2206 0.252696 AGACATACAGGTGGCAGGGA 60.253 55.000 0.00 0.00 0.00 4.20
1945 2207 0.618458 GACATACAGGTGGCAGGGAA 59.382 55.000 0.00 0.00 0.00 3.97
1946 2208 0.620556 ACATACAGGTGGCAGGGAAG 59.379 55.000 0.00 0.00 0.00 3.46
1947 2209 0.107017 CATACAGGTGGCAGGGAAGG 60.107 60.000 0.00 0.00 0.00 3.46
1948 2210 1.926426 ATACAGGTGGCAGGGAAGGC 61.926 60.000 0.00 0.00 0.00 4.35
1978 2240 4.320928 CTGCCGCCGCGAACAAAA 62.321 61.111 15.93 0.00 38.08 2.44
1979 2241 3.609214 CTGCCGCCGCGAACAAAAT 62.609 57.895 15.93 0.00 38.08 1.82
1980 2242 2.430075 GCCGCCGCGAACAAAATT 60.430 55.556 15.93 0.00 0.00 1.82
1981 2243 2.433334 GCCGCCGCGAACAAAATTC 61.433 57.895 15.93 0.00 0.00 2.17
1982 2244 1.799916 CCGCCGCGAACAAAATTCC 60.800 57.895 15.93 0.00 0.00 3.01
1983 2245 1.209127 CGCCGCGAACAAAATTCCT 59.791 52.632 8.23 0.00 0.00 3.36
1984 2246 0.386731 CGCCGCGAACAAAATTCCTT 60.387 50.000 8.23 0.00 0.00 3.36
1985 2247 1.059942 GCCGCGAACAAAATTCCTTG 58.940 50.000 8.23 0.00 0.00 3.61
1986 2248 1.059942 CCGCGAACAAAATTCCTTGC 58.940 50.000 8.23 0.00 0.00 4.01
1987 2249 1.335872 CCGCGAACAAAATTCCTTGCT 60.336 47.619 8.23 0.00 0.00 3.91
1988 2250 2.393764 CGCGAACAAAATTCCTTGCTT 58.606 42.857 0.00 0.00 0.00 3.91
1989 2251 2.405025 CGCGAACAAAATTCCTTGCTTC 59.595 45.455 0.00 0.00 0.00 3.86
1990 2252 2.731451 GCGAACAAAATTCCTTGCTTCC 59.269 45.455 0.00 0.00 0.00 3.46
1991 2253 3.317150 CGAACAAAATTCCTTGCTTCCC 58.683 45.455 0.00 0.00 0.00 3.97
1992 2254 3.664107 GAACAAAATTCCTTGCTTCCCC 58.336 45.455 0.00 0.00 0.00 4.81
1993 2255 1.618343 ACAAAATTCCTTGCTTCCCCG 59.382 47.619 0.00 0.00 0.00 5.73
1994 2256 1.066929 CAAAATTCCTTGCTTCCCCGG 60.067 52.381 0.00 0.00 0.00 5.73
1995 2257 1.257750 AAATTCCTTGCTTCCCCGGC 61.258 55.000 0.00 0.00 0.00 6.13
1996 2258 3.995506 ATTCCTTGCTTCCCCGGCG 62.996 63.158 0.00 0.00 0.00 6.46
2011 2273 4.873129 GCGGCAGCTCGAATCGGA 62.873 66.667 1.76 0.00 41.01 4.55
2012 2274 2.202743 CGGCAGCTCGAATCGGAA 60.203 61.111 1.76 0.00 0.00 4.30
2013 2275 1.592669 CGGCAGCTCGAATCGGAAT 60.593 57.895 1.76 0.00 0.00 3.01
2014 2276 0.318699 CGGCAGCTCGAATCGGAATA 60.319 55.000 1.76 0.00 0.00 1.75
2015 2277 1.140816 GGCAGCTCGAATCGGAATAC 58.859 55.000 1.76 0.00 0.00 1.89
2016 2278 1.140816 GCAGCTCGAATCGGAATACC 58.859 55.000 1.76 0.00 0.00 2.73
2017 2279 1.784525 CAGCTCGAATCGGAATACCC 58.215 55.000 1.76 0.00 0.00 3.69
2018 2280 1.068588 CAGCTCGAATCGGAATACCCA 59.931 52.381 1.76 0.00 34.14 4.51
2019 2281 1.971357 AGCTCGAATCGGAATACCCAT 59.029 47.619 1.76 0.00 34.14 4.00
2020 2282 2.368875 AGCTCGAATCGGAATACCCATT 59.631 45.455 1.76 0.00 34.14 3.16
2021 2283 3.139077 GCTCGAATCGGAATACCCATTT 58.861 45.455 1.76 0.00 34.14 2.32
2022 2284 3.058914 GCTCGAATCGGAATACCCATTTG 60.059 47.826 1.76 0.00 34.14 2.32
2023 2285 4.127171 CTCGAATCGGAATACCCATTTGT 58.873 43.478 1.76 0.00 34.14 2.83
2024 2286 4.124238 TCGAATCGGAATACCCATTTGTC 58.876 43.478 1.76 0.00 34.14 3.18
2025 2287 3.250040 CGAATCGGAATACCCATTTGTCC 59.750 47.826 0.00 0.00 34.14 4.02
2026 2288 3.943671 ATCGGAATACCCATTTGTCCA 57.056 42.857 0.00 0.00 34.14 4.02
2027 2289 3.943671 TCGGAATACCCATTTGTCCAT 57.056 42.857 0.00 0.00 34.14 3.41
2028 2290 3.815809 TCGGAATACCCATTTGTCCATC 58.184 45.455 0.00 0.00 34.14 3.51
2029 2291 2.884639 CGGAATACCCATTTGTCCATCC 59.115 50.000 0.00 0.00 34.14 3.51
2030 2292 3.435026 CGGAATACCCATTTGTCCATCCT 60.435 47.826 0.00 0.00 34.14 3.24
2031 2293 4.145052 GGAATACCCATTTGTCCATCCTC 58.855 47.826 0.00 0.00 34.14 3.71
2032 2294 3.492102 ATACCCATTTGTCCATCCTCG 57.508 47.619 0.00 0.00 0.00 4.63
2033 2295 0.394352 ACCCATTTGTCCATCCTCGC 60.394 55.000 0.00 0.00 0.00 5.03
2034 2296 0.394216 CCCATTTGTCCATCCTCGCA 60.394 55.000 0.00 0.00 0.00 5.10
2035 2297 1.462616 CCATTTGTCCATCCTCGCAA 58.537 50.000 0.00 0.00 0.00 4.85
2036 2298 1.402968 CCATTTGTCCATCCTCGCAAG 59.597 52.381 0.00 0.00 0.00 4.01
2037 2299 1.098050 ATTTGTCCATCCTCGCAAGC 58.902 50.000 0.00 0.00 37.18 4.01
2038 2300 0.250684 TTTGTCCATCCTCGCAAGCA 60.251 50.000 0.00 0.00 37.18 3.91
2039 2301 0.955428 TTGTCCATCCTCGCAAGCAC 60.955 55.000 0.00 0.00 37.18 4.40
2040 2302 2.109126 GTCCATCCTCGCAAGCACC 61.109 63.158 0.00 0.00 37.18 5.01
2041 2303 2.825836 CCATCCTCGCAAGCACCC 60.826 66.667 0.00 0.00 37.18 4.61
2042 2304 2.270205 CATCCTCGCAAGCACCCT 59.730 61.111 0.00 0.00 37.18 4.34
2043 2305 1.377725 CATCCTCGCAAGCACCCTT 60.378 57.895 0.00 0.00 37.18 3.95
2044 2306 1.078143 ATCCTCGCAAGCACCCTTC 60.078 57.895 0.00 0.00 37.18 3.46
2045 2307 2.543067 ATCCTCGCAAGCACCCTTCC 62.543 60.000 0.00 0.00 37.18 3.46
2046 2308 2.032528 CTCGCAAGCACCCTTCCA 59.967 61.111 0.00 0.00 37.18 3.53
2047 2309 2.281484 TCGCAAGCACCCTTCCAC 60.281 61.111 0.00 0.00 37.18 4.02
2048 2310 3.365265 CGCAAGCACCCTTCCACC 61.365 66.667 0.00 0.00 0.00 4.61
2049 2311 2.116125 GCAAGCACCCTTCCACCT 59.884 61.111 0.00 0.00 0.00 4.00
2050 2312 1.973812 GCAAGCACCCTTCCACCTC 60.974 63.158 0.00 0.00 0.00 3.85
2051 2313 1.303643 CAAGCACCCTTCCACCTCC 60.304 63.158 0.00 0.00 0.00 4.30
2052 2314 1.464198 AAGCACCCTTCCACCTCCT 60.464 57.895 0.00 0.00 0.00 3.69
2053 2315 1.492993 AAGCACCCTTCCACCTCCTC 61.493 60.000 0.00 0.00 0.00 3.71
2054 2316 1.920835 GCACCCTTCCACCTCCTCT 60.921 63.158 0.00 0.00 0.00 3.69
2055 2317 1.492993 GCACCCTTCCACCTCCTCTT 61.493 60.000 0.00 0.00 0.00 2.85
2056 2318 0.615850 CACCCTTCCACCTCCTCTTC 59.384 60.000 0.00 0.00 0.00 2.87
2057 2319 0.494095 ACCCTTCCACCTCCTCTTCT 59.506 55.000 0.00 0.00 0.00 2.85
2058 2320 1.132365 ACCCTTCCACCTCCTCTTCTT 60.132 52.381 0.00 0.00 0.00 2.52
2059 2321 1.557371 CCCTTCCACCTCCTCTTCTTC 59.443 57.143 0.00 0.00 0.00 2.87
2060 2322 1.557371 CCTTCCACCTCCTCTTCTTCC 59.443 57.143 0.00 0.00 0.00 3.46
2061 2323 2.260822 CTTCCACCTCCTCTTCTTCCA 58.739 52.381 0.00 0.00 0.00 3.53
2062 2324 2.415983 TCCACCTCCTCTTCTTCCAA 57.584 50.000 0.00 0.00 0.00 3.53
2063 2325 2.921221 TCCACCTCCTCTTCTTCCAAT 58.079 47.619 0.00 0.00 0.00 3.16
2064 2326 2.573462 TCCACCTCCTCTTCTTCCAATG 59.427 50.000 0.00 0.00 0.00 2.82
2065 2327 2.356535 CCACCTCCTCTTCTTCCAATGG 60.357 54.545 0.00 0.00 0.00 3.16
2066 2328 1.283321 ACCTCCTCTTCTTCCAATGGC 59.717 52.381 0.00 0.00 0.00 4.40
2067 2329 1.661341 CTCCTCTTCTTCCAATGGCG 58.339 55.000 0.00 0.00 0.00 5.69
2068 2330 0.984230 TCCTCTTCTTCCAATGGCGT 59.016 50.000 0.00 0.00 0.00 5.68
2069 2331 2.168521 CTCCTCTTCTTCCAATGGCGTA 59.831 50.000 0.00 0.00 0.00 4.42
2070 2332 2.771943 TCCTCTTCTTCCAATGGCGTAT 59.228 45.455 0.00 0.00 0.00 3.06
2071 2333 3.964688 TCCTCTTCTTCCAATGGCGTATA 59.035 43.478 0.00 0.00 0.00 1.47
2072 2334 4.407621 TCCTCTTCTTCCAATGGCGTATAA 59.592 41.667 0.00 0.00 0.00 0.98
2073 2335 5.104693 TCCTCTTCTTCCAATGGCGTATAAA 60.105 40.000 0.00 0.00 0.00 1.40
2074 2336 5.765182 CCTCTTCTTCCAATGGCGTATAAAT 59.235 40.000 0.00 0.00 0.00 1.40
2075 2337 6.073003 CCTCTTCTTCCAATGGCGTATAAATC 60.073 42.308 0.00 0.00 0.00 2.17
2076 2338 5.465390 TCTTCTTCCAATGGCGTATAAATCG 59.535 40.000 0.00 0.00 0.00 3.34
2077 2339 4.699637 TCTTCCAATGGCGTATAAATCGT 58.300 39.130 0.00 0.00 0.00 3.73
2078 2340 4.509970 TCTTCCAATGGCGTATAAATCGTG 59.490 41.667 0.00 0.00 0.00 4.35
2079 2341 3.799366 TCCAATGGCGTATAAATCGTGT 58.201 40.909 0.00 0.00 0.00 4.49
2080 2342 3.805422 TCCAATGGCGTATAAATCGTGTC 59.195 43.478 0.00 0.00 0.00 3.67
2081 2343 3.059188 CCAATGGCGTATAAATCGTGTCC 60.059 47.826 0.00 0.00 0.00 4.02
2082 2344 1.842720 TGGCGTATAAATCGTGTCCG 58.157 50.000 0.00 0.00 0.00 4.79
2091 2353 2.678580 TCGTGTCCGAGCCCATCA 60.679 61.111 0.00 0.00 38.40 3.07
2092 2354 2.202797 CGTGTCCGAGCCCATCAG 60.203 66.667 0.00 0.00 35.63 2.90
2093 2355 2.512515 GTGTCCGAGCCCATCAGC 60.513 66.667 0.00 0.00 0.00 4.26
2094 2356 3.785859 TGTCCGAGCCCATCAGCC 61.786 66.667 0.00 0.00 0.00 4.85
2095 2357 4.554036 GTCCGAGCCCATCAGCCC 62.554 72.222 0.00 0.00 0.00 5.19
2097 2359 4.864334 CCGAGCCCATCAGCCCAC 62.864 72.222 0.00 0.00 0.00 4.61
2098 2360 4.864334 CGAGCCCATCAGCCCACC 62.864 72.222 0.00 0.00 0.00 4.61
2099 2361 4.864334 GAGCCCATCAGCCCACCG 62.864 72.222 0.00 0.00 0.00 4.94
2120 2382 3.680156 CCCCCACCATCACGTTTG 58.320 61.111 0.00 0.00 0.00 2.93
2121 2383 1.228429 CCCCCACCATCACGTTTGT 60.228 57.895 0.00 0.00 0.00 2.83
2123 2385 1.523154 CCCCACCATCACGTTTGTGG 61.523 60.000 13.08 13.08 46.42 4.17
2124 2386 1.285641 CCACCATCACGTTTGTGGC 59.714 57.895 9.82 0.00 46.42 5.01
2125 2387 1.082169 CACCATCACGTTTGTGGCG 60.082 57.895 9.82 0.00 46.42 5.69
2126 2388 1.227704 ACCATCACGTTTGTGGCGA 60.228 52.632 9.82 0.00 46.42 5.54
2127 2389 0.605319 ACCATCACGTTTGTGGCGAT 60.605 50.000 9.82 0.00 46.42 4.58
2128 2390 0.179192 CCATCACGTTTGTGGCGATG 60.179 55.000 3.48 3.48 46.42 3.84
2129 2391 0.179192 CATCACGTTTGTGGCGATGG 60.179 55.000 2.69 0.00 46.42 3.51
2130 2392 1.922135 ATCACGTTTGTGGCGATGGC 61.922 55.000 0.00 0.00 46.42 4.40
2131 2393 3.722295 ACGTTTGTGGCGATGGCG 61.722 61.111 0.00 0.00 41.24 5.69
2132 2394 3.418913 CGTTTGTGGCGATGGCGA 61.419 61.111 0.00 0.00 41.24 5.54
2158 2420 4.477975 GCCTCGAGGTCGACGGTG 62.478 72.222 31.43 4.23 44.22 4.94
2159 2421 3.812019 CCTCGAGGTCGACGGTGG 61.812 72.222 24.04 7.90 44.22 4.61
2160 2422 3.054503 CTCGAGGTCGACGGTGGT 61.055 66.667 9.92 0.00 44.22 4.16
2161 2423 3.324099 CTCGAGGTCGACGGTGGTG 62.324 68.421 9.92 0.00 44.22 4.17
2162 2424 3.359523 CGAGGTCGACGGTGGTGA 61.360 66.667 9.92 0.00 43.02 4.02
2163 2425 2.567049 GAGGTCGACGGTGGTGAG 59.433 66.667 9.92 0.00 0.00 3.51
2164 2426 2.989824 AGGTCGACGGTGGTGAGG 60.990 66.667 9.92 0.00 0.00 3.86
2165 2427 4.736896 GGTCGACGGTGGTGAGGC 62.737 72.222 9.92 0.00 0.00 4.70
2169 2431 4.436998 GACGGTGGTGAGGCGGAG 62.437 72.222 0.00 0.00 0.00 4.63
2262 2524 4.033776 CGAAGCCTTGGCCCCAGA 62.034 66.667 8.17 0.00 0.00 3.86
2263 2525 2.044551 GAAGCCTTGGCCCCAGAG 60.045 66.667 8.17 0.00 0.00 3.35
2264 2526 3.651980 GAAGCCTTGGCCCCAGAGG 62.652 68.421 8.17 3.53 39.47 3.69
2266 2528 4.748144 GCCTTGGCCCCAGAGGTG 62.748 72.222 0.00 0.00 38.26 4.00
2267 2529 2.935481 CCTTGGCCCCAGAGGTGA 60.935 66.667 0.00 0.00 38.26 4.02
2268 2530 2.311854 CCTTGGCCCCAGAGGTGAT 61.312 63.158 0.00 0.00 38.26 3.06
2269 2531 1.077212 CTTGGCCCCAGAGGTGATG 60.077 63.158 0.00 0.00 38.26 3.07
2270 2532 3.286694 TTGGCCCCAGAGGTGATGC 62.287 63.158 0.00 0.00 38.26 3.91
2271 2533 4.512914 GGCCCCAGAGGTGATGCC 62.513 72.222 0.00 0.00 38.26 4.40
2272 2534 3.731728 GCCCCAGAGGTGATGCCA 61.732 66.667 0.00 0.00 40.61 4.92
2273 2535 3.065787 GCCCCAGAGGTGATGCCAT 62.066 63.158 0.00 0.00 40.61 4.40
2274 2536 1.616921 CCCCAGAGGTGATGCCATT 59.383 57.895 0.00 0.00 40.61 3.16
2275 2537 0.466922 CCCCAGAGGTGATGCCATTC 60.467 60.000 0.00 0.00 40.61 2.67
2276 2538 0.256752 CCCAGAGGTGATGCCATTCA 59.743 55.000 0.00 0.00 40.61 2.57
2277 2539 1.133575 CCCAGAGGTGATGCCATTCAT 60.134 52.381 0.00 0.00 40.61 2.57
2283 2545 2.253452 GATGCCATTCATCCGCGC 59.747 61.111 0.00 0.00 44.54 6.86
2284 2546 2.516695 ATGCCATTCATCCGCGCA 60.517 55.556 8.75 0.00 0.00 6.09
2285 2547 2.453773 GATGCCATTCATCCGCGCAG 62.454 60.000 8.75 0.00 44.54 5.18
2305 2567 2.101380 GACGAGGTCGAGCTGCTC 59.899 66.667 23.97 19.53 43.02 4.26
2306 2568 2.673341 ACGAGGTCGAGCTGCTCA 60.673 61.111 27.46 13.12 43.02 4.26
2307 2569 2.201436 GACGAGGTCGAGCTGCTCAA 62.201 60.000 27.46 8.53 43.02 3.02
2308 2570 1.803519 CGAGGTCGAGCTGCTCAAC 60.804 63.158 27.46 20.37 43.02 3.18
2309 2571 1.589113 GAGGTCGAGCTGCTCAACT 59.411 57.895 27.46 21.30 0.00 3.16
2310 2572 0.457681 GAGGTCGAGCTGCTCAACTC 60.458 60.000 27.46 24.42 0.00 3.01
2314 2576 3.184683 GAGCTGCTCAACTCGCGG 61.185 66.667 24.02 0.00 36.84 6.46
2315 2577 4.749310 AGCTGCTCAACTCGCGGG 62.749 66.667 3.27 3.27 34.37 6.13
2317 2579 2.811317 CTGCTCAACTCGCGGGTC 60.811 66.667 14.43 0.00 0.00 4.46
2318 2580 4.717629 TGCTCAACTCGCGGGTCG 62.718 66.667 14.43 0.00 40.15 4.79
2329 2591 4.052229 CGGGTCGCGTTCCTCTGT 62.052 66.667 18.58 0.00 0.00 3.41
2330 2592 2.693762 CGGGTCGCGTTCCTCTGTA 61.694 63.158 18.58 0.00 0.00 2.74
2331 2593 1.588082 GGGTCGCGTTCCTCTGTAA 59.412 57.895 18.58 0.00 0.00 2.41
2332 2594 0.458025 GGGTCGCGTTCCTCTGTAAG 60.458 60.000 18.58 0.00 0.00 2.34
2333 2595 0.243095 GGTCGCGTTCCTCTGTAAGT 59.757 55.000 5.77 0.00 33.76 2.24
2334 2596 1.615502 GTCGCGTTCCTCTGTAAGTC 58.384 55.000 5.77 0.00 33.76 3.01
2335 2597 1.068748 GTCGCGTTCCTCTGTAAGTCA 60.069 52.381 5.77 0.00 33.76 3.41
2336 2598 1.068748 TCGCGTTCCTCTGTAAGTCAC 60.069 52.381 5.77 0.00 33.76 3.67
2337 2599 1.337821 GCGTTCCTCTGTAAGTCACG 58.662 55.000 0.00 0.00 33.65 4.35
2338 2600 1.068748 GCGTTCCTCTGTAAGTCACGA 60.069 52.381 0.00 0.00 32.74 4.35
2339 2601 2.582687 CGTTCCTCTGTAAGTCACGAC 58.417 52.381 0.00 0.00 32.74 4.34
2340 2602 2.667724 CGTTCCTCTGTAAGTCACGACC 60.668 54.545 0.00 0.00 32.74 4.79
2341 2603 2.281539 TCCTCTGTAAGTCACGACCA 57.718 50.000 0.00 0.00 33.76 4.02
2342 2604 1.884579 TCCTCTGTAAGTCACGACCAC 59.115 52.381 0.00 0.00 33.76 4.16
2343 2605 1.067776 CCTCTGTAAGTCACGACCACC 60.068 57.143 0.00 0.00 33.76 4.61
2344 2606 0.963962 TCTGTAAGTCACGACCACCC 59.036 55.000 0.00 0.00 33.76 4.61
2345 2607 0.037605 CTGTAAGTCACGACCACCCC 60.038 60.000 0.00 0.00 0.00 4.95
2346 2608 0.759812 TGTAAGTCACGACCACCCCA 60.760 55.000 0.00 0.00 0.00 4.96
2347 2609 0.320160 GTAAGTCACGACCACCCCAC 60.320 60.000 0.00 0.00 0.00 4.61
2348 2610 1.474332 TAAGTCACGACCACCCCACC 61.474 60.000 0.00 0.00 0.00 4.61
2349 2611 4.324991 GTCACGACCACCCCACCC 62.325 72.222 0.00 0.00 0.00 4.61
2358 2620 4.980476 ACCCCACCCCACCCCATT 62.980 66.667 0.00 0.00 0.00 3.16
2359 2621 3.610479 CCCCACCCCACCCCATTT 61.610 66.667 0.00 0.00 0.00 2.32
2360 2622 2.536088 CCCACCCCACCCCATTTT 59.464 61.111 0.00 0.00 0.00 1.82
2361 2623 1.151921 CCCACCCCACCCCATTTTT 60.152 57.895 0.00 0.00 0.00 1.94
2362 2624 1.487850 CCCACCCCACCCCATTTTTG 61.488 60.000 0.00 0.00 0.00 2.44
2363 2625 1.374568 CACCCCACCCCATTTTTGC 59.625 57.895 0.00 0.00 0.00 3.68
2364 2626 1.074167 ACCCCACCCCATTTTTGCA 60.074 52.632 0.00 0.00 0.00 4.08
2365 2627 0.695803 ACCCCACCCCATTTTTGCAA 60.696 50.000 0.00 0.00 0.00 4.08
2366 2628 0.250684 CCCCACCCCATTTTTGCAAC 60.251 55.000 0.00 0.00 0.00 4.17
2367 2629 0.471617 CCCACCCCATTTTTGCAACA 59.528 50.000 0.00 0.00 0.00 3.33
2368 2630 1.133976 CCCACCCCATTTTTGCAACAA 60.134 47.619 0.00 0.00 0.00 2.83
2369 2631 2.648059 CCACCCCATTTTTGCAACAAA 58.352 42.857 0.00 3.95 0.00 2.83
2370 2632 3.019564 CCACCCCATTTTTGCAACAAAA 58.980 40.909 0.00 0.00 0.00 2.44
2371 2633 3.445096 CCACCCCATTTTTGCAACAAAAA 59.555 39.130 17.61 17.61 34.15 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.307760 CGCTGGCTTGACTCGTTTTT 59.692 50.000 0.00 0.00 0.00 1.94
27 28 1.507141 CCGCTGGCTTGACTCGTTTT 61.507 55.000 0.00 0.00 0.00 2.43
28 29 1.961277 CCGCTGGCTTGACTCGTTT 60.961 57.895 0.00 0.00 0.00 3.60
29 30 2.357517 CCGCTGGCTTGACTCGTT 60.358 61.111 0.00 0.00 0.00 3.85
48 49 1.957186 TGTTTGGGTCAGCGTACGC 60.957 57.895 32.17 32.17 42.33 4.42
49 50 1.857364 GTGTTTGGGTCAGCGTACG 59.143 57.895 11.84 11.84 0.00 3.67
50 51 1.562575 CCGTGTTTGGGTCAGCGTAC 61.563 60.000 0.00 0.00 0.00 3.67
51 52 1.301087 CCGTGTTTGGGTCAGCGTA 60.301 57.895 0.00 0.00 0.00 4.42
52 53 2.590575 CCGTGTTTGGGTCAGCGT 60.591 61.111 0.00 0.00 0.00 5.07
53 54 1.841663 CTTCCGTGTTTGGGTCAGCG 61.842 60.000 0.00 0.00 0.00 5.18
54 55 1.949257 CTTCCGTGTTTGGGTCAGC 59.051 57.895 0.00 0.00 0.00 4.26
55 56 1.841663 CGCTTCCGTGTTTGGGTCAG 61.842 60.000 0.00 0.00 0.00 3.51
56 57 1.890041 CGCTTCCGTGTTTGGGTCA 60.890 57.895 0.00 0.00 0.00 4.02
57 58 2.613506 CCGCTTCCGTGTTTGGGTC 61.614 63.158 0.00 0.00 0.00 4.46
58 59 2.593436 CCGCTTCCGTGTTTGGGT 60.593 61.111 0.00 0.00 0.00 4.51
59 60 2.281208 TCCGCTTCCGTGTTTGGG 60.281 61.111 0.00 0.00 0.00 4.12
60 61 1.234615 ATGTCCGCTTCCGTGTTTGG 61.235 55.000 0.00 0.00 0.00 3.28
61 62 0.110238 CATGTCCGCTTCCGTGTTTG 60.110 55.000 0.00 0.00 0.00 2.93
62 63 1.234615 CCATGTCCGCTTCCGTGTTT 61.235 55.000 0.00 0.00 0.00 2.83
63 64 1.671054 CCATGTCCGCTTCCGTGTT 60.671 57.895 0.00 0.00 0.00 3.32
64 65 2.047274 CCATGTCCGCTTCCGTGT 60.047 61.111 0.00 0.00 0.00 4.49
65 66 2.819595 CCCATGTCCGCTTCCGTG 60.820 66.667 0.00 0.00 0.00 4.94
66 67 3.319198 ACCCATGTCCGCTTCCGT 61.319 61.111 0.00 0.00 0.00 4.69
67 68 2.819595 CACCCATGTCCGCTTCCG 60.820 66.667 0.00 0.00 0.00 4.30
68 69 2.351276 ACACCCATGTCCGCTTCC 59.649 61.111 0.00 0.00 31.55 3.46
76 77 4.033776 CCCGGCAGACACCCATGT 62.034 66.667 0.00 0.00 43.71 3.21
92 93 3.878160 TTTTATTCATTTGGGTCGGCC 57.122 42.857 0.00 0.00 0.00 6.13
93 94 3.610677 CGTTTTTATTCATTTGGGTCGGC 59.389 43.478 0.00 0.00 0.00 5.54
94 95 4.082679 TCCGTTTTTATTCATTTGGGTCGG 60.083 41.667 0.00 0.00 35.35 4.79
95 96 4.854839 GTCCGTTTTTATTCATTTGGGTCG 59.145 41.667 0.00 0.00 0.00 4.79
96 97 5.774630 TGTCCGTTTTTATTCATTTGGGTC 58.225 37.500 0.00 0.00 0.00 4.46
97 98 5.793030 TGTCCGTTTTTATTCATTTGGGT 57.207 34.783 0.00 0.00 0.00 4.51
98 99 7.484035 TTTTGTCCGTTTTTATTCATTTGGG 57.516 32.000 0.00 0.00 0.00 4.12
99 100 8.768955 TGATTTTGTCCGTTTTTATTCATTTGG 58.231 29.630 0.00 0.00 0.00 3.28
100 101 9.579610 GTGATTTTGTCCGTTTTTATTCATTTG 57.420 29.630 0.00 0.00 0.00 2.32
101 102 9.541143 AGTGATTTTGTCCGTTTTTATTCATTT 57.459 25.926 0.00 0.00 0.00 2.32
104 105 9.834628 GATAGTGATTTTGTCCGTTTTTATTCA 57.165 29.630 0.00 0.00 0.00 2.57
105 106 9.285770 GGATAGTGATTTTGTCCGTTTTTATTC 57.714 33.333 0.00 0.00 0.00 1.75
106 107 7.966204 CGGATAGTGATTTTGTCCGTTTTTATT 59.034 33.333 4.09 0.00 44.94 1.40
107 108 7.469260 CGGATAGTGATTTTGTCCGTTTTTAT 58.531 34.615 4.09 0.00 44.94 1.40
108 109 6.833839 CGGATAGTGATTTTGTCCGTTTTTA 58.166 36.000 4.09 0.00 44.94 1.52
109 110 5.695818 CGGATAGTGATTTTGTCCGTTTTT 58.304 37.500 4.09 0.00 44.94 1.94
110 111 5.291293 CGGATAGTGATTTTGTCCGTTTT 57.709 39.130 4.09 0.00 44.94 2.43
111 112 4.939509 CGGATAGTGATTTTGTCCGTTT 57.060 40.909 4.09 0.00 44.94 3.60
115 116 4.457949 ACCAAACGGATAGTGATTTTGTCC 59.542 41.667 0.00 0.00 0.00 4.02
116 117 5.622770 ACCAAACGGATAGTGATTTTGTC 57.377 39.130 0.00 0.00 0.00 3.18
117 118 4.153475 CGACCAAACGGATAGTGATTTTGT 59.847 41.667 0.00 0.00 0.00 2.83
118 119 4.647964 CGACCAAACGGATAGTGATTTTG 58.352 43.478 0.00 0.00 0.00 2.44
119 120 4.939509 CGACCAAACGGATAGTGATTTT 57.060 40.909 0.00 0.00 0.00 1.82
131 132 2.501650 CAATGCGCCGACCAAACG 60.502 61.111 4.18 0.00 0.00 3.60
132 133 2.126502 CCAATGCGCCGACCAAAC 60.127 61.111 4.18 0.00 0.00 2.93
133 134 2.281831 TCCAATGCGCCGACCAAA 60.282 55.556 4.18 0.00 0.00 3.28
134 135 2.745884 CTCCAATGCGCCGACCAA 60.746 61.111 4.18 0.00 0.00 3.67
135 136 3.545124 AACTCCAATGCGCCGACCA 62.545 57.895 4.18 0.00 0.00 4.02
136 137 2.746277 AACTCCAATGCGCCGACC 60.746 61.111 4.18 0.00 0.00 4.79
137 138 2.480555 CAACTCCAATGCGCCGAC 59.519 61.111 4.18 0.00 0.00 4.79
138 139 3.430862 GCAACTCCAATGCGCCGA 61.431 61.111 4.18 0.00 33.57 5.54
143 144 9.403110 CATATTTATTAAGAGCAACTCCAATGC 57.597 33.333 0.00 0.00 44.15 3.56
144 145 9.403110 GCATATTTATTAAGAGCAACTCCAATG 57.597 33.333 0.00 0.00 0.00 2.82
145 146 9.135189 TGCATATTTATTAAGAGCAACTCCAAT 57.865 29.630 0.00 0.00 0.00 3.16
146 147 8.518430 TGCATATTTATTAAGAGCAACTCCAA 57.482 30.769 0.00 0.00 0.00 3.53
147 148 8.518430 TTGCATATTTATTAAGAGCAACTCCA 57.482 30.769 0.00 0.00 35.81 3.86
148 149 9.971922 AATTGCATATTTATTAAGAGCAACTCC 57.028 29.630 0.00 0.00 42.37 3.85
166 167 9.752228 TGGCCTCTCAATAATATAAATTGCATA 57.248 29.630 3.32 0.00 34.89 3.14
167 168 8.654485 TGGCCTCTCAATAATATAAATTGCAT 57.346 30.769 3.32 0.00 34.89 3.96
168 169 8.476064 TTGGCCTCTCAATAATATAAATTGCA 57.524 30.769 3.32 0.00 34.89 4.08
169 170 9.415544 CTTTGGCCTCTCAATAATATAAATTGC 57.584 33.333 3.32 0.00 34.89 3.56
170 171 9.415544 GCTTTGGCCTCTCAATAATATAAATTG 57.584 33.333 3.32 4.91 35.98 2.32
189 190 1.743431 GCCCATAATGTTGGCTTTGGC 60.743 52.381 0.00 0.00 42.01 4.52
190 191 2.314323 GCCCATAATGTTGGCTTTGG 57.686 50.000 0.00 0.00 42.01 3.28
195 196 1.035139 CTCCAGCCCATAATGTTGGC 58.965 55.000 0.00 0.00 45.70 4.52
196 197 1.696063 CCTCCAGCCCATAATGTTGG 58.304 55.000 0.00 0.00 36.46 3.77
197 198 1.215173 TCCCTCCAGCCCATAATGTTG 59.785 52.381 0.00 0.00 0.00 3.33
198 199 1.496429 CTCCCTCCAGCCCATAATGTT 59.504 52.381 0.00 0.00 0.00 2.71
199 200 1.143813 CTCCCTCCAGCCCATAATGT 58.856 55.000 0.00 0.00 0.00 2.71
200 201 1.143813 ACTCCCTCCAGCCCATAATG 58.856 55.000 0.00 0.00 0.00 1.90
201 202 2.339769 GTACTCCCTCCAGCCCATAAT 58.660 52.381 0.00 0.00 0.00 1.28
202 203 1.009060 TGTACTCCCTCCAGCCCATAA 59.991 52.381 0.00 0.00 0.00 1.90
203 204 0.639943 TGTACTCCCTCCAGCCCATA 59.360 55.000 0.00 0.00 0.00 2.74
204 205 0.253160 TTGTACTCCCTCCAGCCCAT 60.253 55.000 0.00 0.00 0.00 4.00
205 206 0.474854 TTTGTACTCCCTCCAGCCCA 60.475 55.000 0.00 0.00 0.00 5.36
206 207 0.696501 TTTTGTACTCCCTCCAGCCC 59.303 55.000 0.00 0.00 0.00 5.19
207 208 1.628846 TCTTTTGTACTCCCTCCAGCC 59.371 52.381 0.00 0.00 0.00 4.85
208 209 3.418684 TTCTTTTGTACTCCCTCCAGC 57.581 47.619 0.00 0.00 0.00 4.85
209 210 4.911390 ACATTCTTTTGTACTCCCTCCAG 58.089 43.478 0.00 0.00 0.00 3.86
210 211 4.349636 TGACATTCTTTTGTACTCCCTCCA 59.650 41.667 0.00 0.00 0.00 3.86
211 212 4.906618 TGACATTCTTTTGTACTCCCTCC 58.093 43.478 0.00 0.00 0.00 4.30
212 213 6.877611 TTTGACATTCTTTTGTACTCCCTC 57.122 37.500 0.00 0.00 0.00 4.30
213 214 7.060421 TCTTTTGACATTCTTTTGTACTCCCT 58.940 34.615 0.00 0.00 0.00 4.20
214 215 7.013369 ACTCTTTTGACATTCTTTTGTACTCCC 59.987 37.037 0.00 0.00 0.00 4.30
215 216 7.931275 ACTCTTTTGACATTCTTTTGTACTCC 58.069 34.615 0.00 0.00 0.00 3.85
217 218 9.832445 TCTACTCTTTTGACATTCTTTTGTACT 57.168 29.630 0.00 0.00 0.00 2.73
220 221 9.956720 CATTCTACTCTTTTGACATTCTTTTGT 57.043 29.630 0.00 0.00 0.00 2.83
221 222 8.909671 GCATTCTACTCTTTTGACATTCTTTTG 58.090 33.333 0.00 0.00 0.00 2.44
222 223 8.632679 TGCATTCTACTCTTTTGACATTCTTTT 58.367 29.630 0.00 0.00 0.00 2.27
223 224 8.169977 TGCATTCTACTCTTTTGACATTCTTT 57.830 30.769 0.00 0.00 0.00 2.52
224 225 7.750229 TGCATTCTACTCTTTTGACATTCTT 57.250 32.000 0.00 0.00 0.00 2.52
225 226 7.750229 TTGCATTCTACTCTTTTGACATTCT 57.250 32.000 0.00 0.00 0.00 2.40
226 227 8.801715 TTTTGCATTCTACTCTTTTGACATTC 57.198 30.769 0.00 0.00 0.00 2.67
227 228 7.869429 CCTTTTGCATTCTACTCTTTTGACATT 59.131 33.333 0.00 0.00 0.00 2.71
228 229 7.014615 ACCTTTTGCATTCTACTCTTTTGACAT 59.985 33.333 0.00 0.00 0.00 3.06
229 230 6.321181 ACCTTTTGCATTCTACTCTTTTGACA 59.679 34.615 0.00 0.00 0.00 3.58
230 231 6.739112 ACCTTTTGCATTCTACTCTTTTGAC 58.261 36.000 0.00 0.00 0.00 3.18
231 232 6.959639 ACCTTTTGCATTCTACTCTTTTGA 57.040 33.333 0.00 0.00 0.00 2.69
232 233 9.528018 TTTTACCTTTTGCATTCTACTCTTTTG 57.472 29.630 0.00 0.00 0.00 2.44
234 235 9.750125 CTTTTTACCTTTTGCATTCTACTCTTT 57.250 29.630 0.00 0.00 0.00 2.52
235 236 9.131791 TCTTTTTACCTTTTGCATTCTACTCTT 57.868 29.630 0.00 0.00 0.00 2.85
236 237 8.568794 GTCTTTTTACCTTTTGCATTCTACTCT 58.431 33.333 0.00 0.00 0.00 3.24
237 238 8.349983 TGTCTTTTTACCTTTTGCATTCTACTC 58.650 33.333 0.00 0.00 0.00 2.59
238 239 8.232913 TGTCTTTTTACCTTTTGCATTCTACT 57.767 30.769 0.00 0.00 0.00 2.57
239 240 9.129209 GATGTCTTTTTACCTTTTGCATTCTAC 57.871 33.333 0.00 0.00 0.00 2.59
240 241 8.855110 TGATGTCTTTTTACCTTTTGCATTCTA 58.145 29.630 0.00 0.00 0.00 2.10
241 242 7.653311 GTGATGTCTTTTTACCTTTTGCATTCT 59.347 33.333 0.00 0.00 0.00 2.40
242 243 7.653311 AGTGATGTCTTTTTACCTTTTGCATTC 59.347 33.333 0.00 0.00 0.00 2.67
243 244 7.500141 AGTGATGTCTTTTTACCTTTTGCATT 58.500 30.769 0.00 0.00 0.00 3.56
244 245 7.054491 AGTGATGTCTTTTTACCTTTTGCAT 57.946 32.000 0.00 0.00 0.00 3.96
245 246 6.463995 AGTGATGTCTTTTTACCTTTTGCA 57.536 33.333 0.00 0.00 0.00 4.08
256 257 9.890629 TGCTCAGTTATATTAGTGATGTCTTTT 57.109 29.630 0.00 0.00 0.00 2.27
258 259 9.703892 GATGCTCAGTTATATTAGTGATGTCTT 57.296 33.333 0.00 0.00 0.00 3.01
259 260 9.087871 AGATGCTCAGTTATATTAGTGATGTCT 57.912 33.333 0.00 2.51 0.00 3.41
260 261 9.703892 AAGATGCTCAGTTATATTAGTGATGTC 57.296 33.333 0.00 0.61 0.00 3.06
261 262 9.703892 GAAGATGCTCAGTTATATTAGTGATGT 57.296 33.333 0.00 0.00 0.00 3.06
262 263 9.702494 TGAAGATGCTCAGTTATATTAGTGATG 57.298 33.333 0.00 0.00 0.00 3.07
318 319 1.529713 GCCCCAGTCGGTCCAAAAA 60.530 57.895 0.00 0.00 0.00 1.94
347 348 0.907704 TATGGGCCGTCTGTTGGAGT 60.908 55.000 0.00 0.00 0.00 3.85
392 393 6.344500 AGGTGTTGCATTTTACATCACAAAA 58.656 32.000 2.54 0.00 38.77 2.44
395 396 4.320129 CGAGGTGTTGCATTTTACATCACA 60.320 41.667 2.54 0.00 38.77 3.58
480 481 1.201414 ACGGAAATGAAATGGCGGTTC 59.799 47.619 0.00 0.00 0.00 3.62
583 588 2.976903 GCCGGATCTGATGCAGGC 60.977 66.667 21.44 21.44 34.60 4.85
586 591 3.853487 AGCGCCGGATCTGATGCA 61.853 61.111 5.05 0.00 0.00 3.96
587 592 3.344215 CAGCGCCGGATCTGATGC 61.344 66.667 5.05 6.49 32.26 3.91
1059 1285 3.494254 ACACCCCAGTTGCCGGAA 61.494 61.111 5.05 0.00 0.00 4.30
1091 1317 2.515996 GATCCACCAACGCCTTCCGA 62.516 60.000 0.00 0.00 41.02 4.55
1184 1410 1.768275 TCTCTGGAAAGTTGAGGTGCA 59.232 47.619 0.00 0.00 0.00 4.57
1271 1501 3.305629 CGGCTTCTTCATCTTCTTCTTCG 59.694 47.826 0.00 0.00 0.00 3.79
1307 1543 2.107750 CATCGGTCTCGCCAGCAT 59.892 61.111 0.00 0.00 36.97 3.79
1369 1605 2.709934 AGTAGTACTCCATCTCGGCCTA 59.290 50.000 0.00 0.00 33.14 3.93
1404 1641 0.617935 GCCCCTTCTTCTTCTGCTCT 59.382 55.000 0.00 0.00 0.00 4.09
1478 1718 1.306141 TCTGCCCAATCCTCCTCGT 60.306 57.895 0.00 0.00 0.00 4.18
1488 1728 1.544825 CCTCCGAGAAGTCTGCCCAA 61.545 60.000 0.00 0.00 0.00 4.12
1536 1788 0.251253 AGAACTCCTCCTTCGTCGGT 60.251 55.000 0.00 0.00 0.00 4.69
1727 1980 7.348815 TCCAACAGATAGTCCAAATTGATGAT 58.651 34.615 0.00 0.00 0.00 2.45
1808 2068 6.452494 TCAAAATTTGACGGTCTAAAACCA 57.548 33.333 9.88 0.00 40.62 3.67
1815 2075 4.827284 AGATGGTTCAAAATTTGACGGTCT 59.173 37.500 8.06 7.02 39.87 3.85
1853 2115 3.995705 CCTTGCTTTCTCTGTTCTCTCTG 59.004 47.826 0.00 0.00 0.00 3.35
1854 2116 3.900601 TCCTTGCTTTCTCTGTTCTCTCT 59.099 43.478 0.00 0.00 0.00 3.10
1855 2117 4.264460 TCCTTGCTTTCTCTGTTCTCTC 57.736 45.455 0.00 0.00 0.00 3.20
1856 2118 4.696479 TTCCTTGCTTTCTCTGTTCTCT 57.304 40.909 0.00 0.00 0.00 3.10
1857 2119 5.529060 TCTTTTCCTTGCTTTCTCTGTTCTC 59.471 40.000 0.00 0.00 0.00 2.87
1858 2120 5.440610 TCTTTTCCTTGCTTTCTCTGTTCT 58.559 37.500 0.00 0.00 0.00 3.01
1859 2121 5.757850 TCTTTTCCTTGCTTTCTCTGTTC 57.242 39.130 0.00 0.00 0.00 3.18
1860 2122 6.406288 CCTTTCTTTTCCTTGCTTTCTCTGTT 60.406 38.462 0.00 0.00 0.00 3.16
1861 2123 5.068329 CCTTTCTTTTCCTTGCTTTCTCTGT 59.932 40.000 0.00 0.00 0.00 3.41
1862 2124 5.527033 CCTTTCTTTTCCTTGCTTTCTCTG 58.473 41.667 0.00 0.00 0.00 3.35
1863 2125 4.038522 GCCTTTCTTTTCCTTGCTTTCTCT 59.961 41.667 0.00 0.00 0.00 3.10
1864 2126 4.302455 GCCTTTCTTTTCCTTGCTTTCTC 58.698 43.478 0.00 0.00 0.00 2.87
1865 2127 3.070159 GGCCTTTCTTTTCCTTGCTTTCT 59.930 43.478 0.00 0.00 0.00 2.52
1866 2128 3.181466 TGGCCTTTCTTTTCCTTGCTTTC 60.181 43.478 3.32 0.00 0.00 2.62
1867 2129 2.771372 TGGCCTTTCTTTTCCTTGCTTT 59.229 40.909 3.32 0.00 0.00 3.51
1868 2130 2.397597 TGGCCTTTCTTTTCCTTGCTT 58.602 42.857 3.32 0.00 0.00 3.91
1869 2131 2.086610 TGGCCTTTCTTTTCCTTGCT 57.913 45.000 3.32 0.00 0.00 3.91
1870 2132 2.872245 GTTTGGCCTTTCTTTTCCTTGC 59.128 45.455 3.32 0.00 0.00 4.01
1871 2133 3.466836 GGTTTGGCCTTTCTTTTCCTTG 58.533 45.455 3.32 0.00 0.00 3.61
1872 2134 3.838244 GGTTTGGCCTTTCTTTTCCTT 57.162 42.857 3.32 0.00 0.00 3.36
1884 2146 4.164843 TGATAGGTTGATAGGTTTGGCC 57.835 45.455 0.00 0.00 37.58 5.36
1885 2147 5.437060 TCTTGATAGGTTGATAGGTTTGGC 58.563 41.667 0.00 0.00 0.00 4.52
1886 2148 6.889198 TCTCTTGATAGGTTGATAGGTTTGG 58.111 40.000 0.00 0.00 0.00 3.28
1887 2149 6.989169 CCTCTCTTGATAGGTTGATAGGTTTG 59.011 42.308 0.00 0.00 0.00 2.93
1888 2150 6.674419 ACCTCTCTTGATAGGTTGATAGGTTT 59.326 38.462 2.36 0.00 43.77 3.27
1889 2151 6.206042 ACCTCTCTTGATAGGTTGATAGGTT 58.794 40.000 2.36 0.00 43.77 3.50
1890 2152 5.782925 ACCTCTCTTGATAGGTTGATAGGT 58.217 41.667 2.36 0.00 43.77 3.08
1891 2153 7.235079 TCTACCTCTCTTGATAGGTTGATAGG 58.765 42.308 11.97 0.00 43.77 2.57
1892 2154 8.160765 TCTCTACCTCTCTTGATAGGTTGATAG 58.839 40.741 15.33 7.61 43.77 2.08
1893 2155 7.940137 GTCTCTACCTCTCTTGATAGGTTGATA 59.060 40.741 15.33 8.99 43.77 2.15
1894 2156 6.775629 GTCTCTACCTCTCTTGATAGGTTGAT 59.224 42.308 15.33 0.00 43.77 2.57
1895 2157 6.069323 AGTCTCTACCTCTCTTGATAGGTTGA 60.069 42.308 11.97 13.47 43.77 3.18
1896 2158 6.126409 AGTCTCTACCTCTCTTGATAGGTTG 58.874 44.000 11.97 10.48 43.77 3.77
1897 2159 6.335781 AGTCTCTACCTCTCTTGATAGGTT 57.664 41.667 11.97 0.00 43.77 3.50
1899 2161 7.234782 TCTCTAGTCTCTACCTCTCTTGATAGG 59.765 44.444 1.17 1.17 38.93 2.57
1900 2162 8.190326 TCTCTAGTCTCTACCTCTCTTGATAG 57.810 42.308 0.00 0.00 0.00 2.08
1901 2163 8.008332 TCTCTCTAGTCTCTACCTCTCTTGATA 58.992 40.741 0.00 0.00 0.00 2.15
1902 2164 6.844388 TCTCTCTAGTCTCTACCTCTCTTGAT 59.156 42.308 0.00 0.00 0.00 2.57
1903 2165 6.097839 GTCTCTCTAGTCTCTACCTCTCTTGA 59.902 46.154 0.00 0.00 0.00 3.02
1904 2166 6.127168 TGTCTCTCTAGTCTCTACCTCTCTTG 60.127 46.154 0.00 0.00 0.00 3.02
1905 2167 5.962031 TGTCTCTCTAGTCTCTACCTCTCTT 59.038 44.000 0.00 0.00 0.00 2.85
1906 2168 5.525484 TGTCTCTCTAGTCTCTACCTCTCT 58.475 45.833 0.00 0.00 0.00 3.10
1907 2169 5.864418 TGTCTCTCTAGTCTCTACCTCTC 57.136 47.826 0.00 0.00 0.00 3.20
1908 2170 6.842280 TGTATGTCTCTCTAGTCTCTACCTCT 59.158 42.308 0.00 0.00 0.00 3.69
1909 2171 7.058023 TGTATGTCTCTCTAGTCTCTACCTC 57.942 44.000 0.00 0.00 0.00 3.85
1910 2172 6.042781 CCTGTATGTCTCTCTAGTCTCTACCT 59.957 46.154 0.00 0.00 0.00 3.08
1911 2173 6.183361 ACCTGTATGTCTCTCTAGTCTCTACC 60.183 46.154 0.00 0.00 0.00 3.18
1912 2174 6.704493 CACCTGTATGTCTCTCTAGTCTCTAC 59.296 46.154 0.00 0.00 0.00 2.59
1913 2175 6.183361 CCACCTGTATGTCTCTCTAGTCTCTA 60.183 46.154 0.00 0.00 0.00 2.43
1914 2176 5.397447 CCACCTGTATGTCTCTCTAGTCTCT 60.397 48.000 0.00 0.00 0.00 3.10
1915 2177 4.819630 CCACCTGTATGTCTCTCTAGTCTC 59.180 50.000 0.00 0.00 0.00 3.36
1916 2178 4.787551 CCACCTGTATGTCTCTCTAGTCT 58.212 47.826 0.00 0.00 0.00 3.24
1917 2179 3.316868 GCCACCTGTATGTCTCTCTAGTC 59.683 52.174 0.00 0.00 0.00 2.59
1918 2180 3.292460 GCCACCTGTATGTCTCTCTAGT 58.708 50.000 0.00 0.00 0.00 2.57
1919 2181 3.291584 TGCCACCTGTATGTCTCTCTAG 58.708 50.000 0.00 0.00 0.00 2.43
1920 2182 3.291584 CTGCCACCTGTATGTCTCTCTA 58.708 50.000 0.00 0.00 0.00 2.43
1921 2183 2.106566 CTGCCACCTGTATGTCTCTCT 58.893 52.381 0.00 0.00 0.00 3.10
1922 2184 1.137872 CCTGCCACCTGTATGTCTCTC 59.862 57.143 0.00 0.00 0.00 3.20
1923 2185 1.198713 CCTGCCACCTGTATGTCTCT 58.801 55.000 0.00 0.00 0.00 3.10
1924 2186 0.179000 CCCTGCCACCTGTATGTCTC 59.821 60.000 0.00 0.00 0.00 3.36
1925 2187 0.252696 TCCCTGCCACCTGTATGTCT 60.253 55.000 0.00 0.00 0.00 3.41
1926 2188 0.618458 TTCCCTGCCACCTGTATGTC 59.382 55.000 0.00 0.00 0.00 3.06
1927 2189 0.620556 CTTCCCTGCCACCTGTATGT 59.379 55.000 0.00 0.00 0.00 2.29
1928 2190 0.107017 CCTTCCCTGCCACCTGTATG 60.107 60.000 0.00 0.00 0.00 2.39
1929 2191 1.926426 GCCTTCCCTGCCACCTGTAT 61.926 60.000 0.00 0.00 0.00 2.29
1930 2192 2.602676 GCCTTCCCTGCCACCTGTA 61.603 63.158 0.00 0.00 0.00 2.74
1931 2193 3.971702 GCCTTCCCTGCCACCTGT 61.972 66.667 0.00 0.00 0.00 4.00
1961 2223 3.609214 ATTTTGTTCGCGGCGGCAG 62.609 57.895 23.46 9.16 39.92 4.85
1962 2224 3.200887 AATTTTGTTCGCGGCGGCA 62.201 52.632 23.46 18.25 39.92 5.69
1963 2225 2.430075 AATTTTGTTCGCGGCGGC 60.430 55.556 23.46 15.84 0.00 6.53
1964 2226 1.799916 GGAATTTTGTTCGCGGCGG 60.800 57.895 23.46 3.89 0.00 6.13
1965 2227 0.386731 AAGGAATTTTGTTCGCGGCG 60.387 50.000 17.70 17.70 0.00 6.46
1966 2228 1.059942 CAAGGAATTTTGTTCGCGGC 58.940 50.000 6.13 0.00 0.00 6.53
1967 2229 1.059942 GCAAGGAATTTTGTTCGCGG 58.940 50.000 6.13 0.00 0.00 6.46
1968 2230 2.050477 AGCAAGGAATTTTGTTCGCG 57.950 45.000 0.00 0.00 0.00 5.87
1969 2231 2.731451 GGAAGCAAGGAATTTTGTTCGC 59.269 45.455 0.00 0.00 0.00 4.70
1970 2232 3.317150 GGGAAGCAAGGAATTTTGTTCG 58.683 45.455 0.00 0.00 0.00 3.95
1971 2233 3.664107 GGGGAAGCAAGGAATTTTGTTC 58.336 45.455 0.00 0.00 0.00 3.18
1972 2234 2.037121 CGGGGAAGCAAGGAATTTTGTT 59.963 45.455 0.00 0.00 0.00 2.83
1973 2235 1.618343 CGGGGAAGCAAGGAATTTTGT 59.382 47.619 0.00 0.00 0.00 2.83
1974 2236 1.066929 CCGGGGAAGCAAGGAATTTTG 60.067 52.381 0.00 0.00 0.00 2.44
1975 2237 1.266178 CCGGGGAAGCAAGGAATTTT 58.734 50.000 0.00 0.00 0.00 1.82
1976 2238 1.257750 GCCGGGGAAGCAAGGAATTT 61.258 55.000 2.18 0.00 0.00 1.82
1977 2239 1.682344 GCCGGGGAAGCAAGGAATT 60.682 57.895 2.18 0.00 0.00 2.17
1978 2240 2.043953 GCCGGGGAAGCAAGGAAT 60.044 61.111 2.18 0.00 0.00 3.01
1979 2241 4.715523 CGCCGGGGAAGCAAGGAA 62.716 66.667 14.46 0.00 0.00 3.36
1994 2256 4.873129 TCCGATTCGAGCTGCCGC 62.873 66.667 7.83 0.00 0.00 6.53
1995 2257 0.318699 TATTCCGATTCGAGCTGCCG 60.319 55.000 7.83 0.00 0.00 5.69
1996 2258 1.140816 GTATTCCGATTCGAGCTGCC 58.859 55.000 7.83 0.00 0.00 4.85
1997 2259 1.140816 GGTATTCCGATTCGAGCTGC 58.859 55.000 7.83 0.00 0.00 5.25
1998 2260 1.068588 TGGGTATTCCGATTCGAGCTG 59.931 52.381 7.83 0.00 38.76 4.24
1999 2261 1.410004 TGGGTATTCCGATTCGAGCT 58.590 50.000 7.83 0.00 38.76 4.09
2000 2262 2.457366 ATGGGTATTCCGATTCGAGC 57.543 50.000 7.83 0.00 38.76 5.03
2001 2263 4.127171 ACAAATGGGTATTCCGATTCGAG 58.873 43.478 7.83 0.00 40.40 4.04
2002 2264 4.124238 GACAAATGGGTATTCCGATTCGA 58.876 43.478 7.83 0.00 40.40 3.71
2003 2265 3.250040 GGACAAATGGGTATTCCGATTCG 59.750 47.826 0.00 0.00 40.40 3.34
2004 2266 4.204012 TGGACAAATGGGTATTCCGATTC 58.796 43.478 0.00 0.00 40.40 2.52
2005 2267 4.243793 TGGACAAATGGGTATTCCGATT 57.756 40.909 0.00 0.00 42.50 3.34
2006 2268 3.943671 TGGACAAATGGGTATTCCGAT 57.056 42.857 0.00 0.00 38.76 4.18
2007 2269 3.434453 GGATGGACAAATGGGTATTCCGA 60.434 47.826 0.00 0.00 38.76 4.55
2008 2270 2.884639 GGATGGACAAATGGGTATTCCG 59.115 50.000 0.00 0.00 38.76 4.30
2009 2271 4.145052 GAGGATGGACAAATGGGTATTCC 58.855 47.826 0.00 0.00 0.00 3.01
2010 2272 3.815401 CGAGGATGGACAAATGGGTATTC 59.185 47.826 0.00 0.00 0.00 1.75
2011 2273 3.820557 CGAGGATGGACAAATGGGTATT 58.179 45.455 0.00 0.00 0.00 1.89
2012 2274 2.487265 GCGAGGATGGACAAATGGGTAT 60.487 50.000 0.00 0.00 0.00 2.73
2013 2275 1.134220 GCGAGGATGGACAAATGGGTA 60.134 52.381 0.00 0.00 0.00 3.69
2014 2276 0.394352 GCGAGGATGGACAAATGGGT 60.394 55.000 0.00 0.00 0.00 4.51
2015 2277 0.394216 TGCGAGGATGGACAAATGGG 60.394 55.000 0.00 0.00 0.00 4.00
2016 2278 1.402968 CTTGCGAGGATGGACAAATGG 59.597 52.381 0.00 0.00 0.00 3.16
2017 2279 1.202222 GCTTGCGAGGATGGACAAATG 60.202 52.381 2.37 0.00 0.00 2.32
2018 2280 1.098050 GCTTGCGAGGATGGACAAAT 58.902 50.000 2.37 0.00 0.00 2.32
2019 2281 0.250684 TGCTTGCGAGGATGGACAAA 60.251 50.000 2.37 0.00 0.00 2.83
2020 2282 0.955428 GTGCTTGCGAGGATGGACAA 60.955 55.000 2.37 0.00 0.00 3.18
2021 2283 1.375908 GTGCTTGCGAGGATGGACA 60.376 57.895 2.37 0.00 0.00 4.02
2022 2284 2.109126 GGTGCTTGCGAGGATGGAC 61.109 63.158 2.37 0.00 0.00 4.02
2023 2285 2.268920 GGTGCTTGCGAGGATGGA 59.731 61.111 2.37 0.00 0.00 3.41
2024 2286 2.825836 GGGTGCTTGCGAGGATGG 60.826 66.667 2.37 0.00 0.00 3.51
2025 2287 1.372087 GAAGGGTGCTTGCGAGGATG 61.372 60.000 2.37 0.00 0.00 3.51
2026 2288 1.078143 GAAGGGTGCTTGCGAGGAT 60.078 57.895 2.37 0.00 0.00 3.24
2027 2289 2.347490 GAAGGGTGCTTGCGAGGA 59.653 61.111 2.37 0.00 0.00 3.71
2028 2290 2.747855 GGAAGGGTGCTTGCGAGG 60.748 66.667 2.37 0.00 0.00 4.63
2029 2291 2.032528 TGGAAGGGTGCTTGCGAG 59.967 61.111 0.00 0.00 0.00 5.03
2030 2292 2.281484 GTGGAAGGGTGCTTGCGA 60.281 61.111 0.00 0.00 0.00 5.10
2031 2293 3.365265 GGTGGAAGGGTGCTTGCG 61.365 66.667 0.00 0.00 0.00 4.85
2032 2294 1.973812 GAGGTGGAAGGGTGCTTGC 60.974 63.158 0.00 0.00 0.00 4.01
2033 2295 1.303643 GGAGGTGGAAGGGTGCTTG 60.304 63.158 0.00 0.00 0.00 4.01
2034 2296 1.464198 AGGAGGTGGAAGGGTGCTT 60.464 57.895 0.00 0.00 0.00 3.91
2035 2297 1.920835 GAGGAGGTGGAAGGGTGCT 60.921 63.158 0.00 0.00 0.00 4.40
2036 2298 1.492993 AAGAGGAGGTGGAAGGGTGC 61.493 60.000 0.00 0.00 0.00 5.01
2037 2299 0.615850 GAAGAGGAGGTGGAAGGGTG 59.384 60.000 0.00 0.00 0.00 4.61
2038 2300 0.494095 AGAAGAGGAGGTGGAAGGGT 59.506 55.000 0.00 0.00 0.00 4.34
2039 2301 1.557371 GAAGAAGAGGAGGTGGAAGGG 59.443 57.143 0.00 0.00 0.00 3.95
2040 2302 1.557371 GGAAGAAGAGGAGGTGGAAGG 59.443 57.143 0.00 0.00 0.00 3.46
2041 2303 2.260822 TGGAAGAAGAGGAGGTGGAAG 58.739 52.381 0.00 0.00 0.00 3.46
2042 2304 2.415983 TGGAAGAAGAGGAGGTGGAA 57.584 50.000 0.00 0.00 0.00 3.53
2043 2305 2.415983 TTGGAAGAAGAGGAGGTGGA 57.584 50.000 0.00 0.00 0.00 4.02
2044 2306 2.356535 CCATTGGAAGAAGAGGAGGTGG 60.357 54.545 0.00 0.00 0.00 4.61
2045 2307 2.943199 GCCATTGGAAGAAGAGGAGGTG 60.943 54.545 6.95 0.00 0.00 4.00
2046 2308 1.283321 GCCATTGGAAGAAGAGGAGGT 59.717 52.381 6.95 0.00 0.00 3.85
2047 2309 1.745141 CGCCATTGGAAGAAGAGGAGG 60.745 57.143 6.95 0.00 0.00 4.30
2048 2310 1.065854 ACGCCATTGGAAGAAGAGGAG 60.066 52.381 6.95 0.00 0.00 3.69
2049 2311 0.984230 ACGCCATTGGAAGAAGAGGA 59.016 50.000 6.95 0.00 0.00 3.71
2050 2312 2.691409 TACGCCATTGGAAGAAGAGG 57.309 50.000 6.95 0.00 0.00 3.69
2051 2313 6.346919 CGATTTATACGCCATTGGAAGAAGAG 60.347 42.308 6.95 0.00 0.00 2.85
2052 2314 5.465390 CGATTTATACGCCATTGGAAGAAGA 59.535 40.000 6.95 0.00 0.00 2.87
2053 2315 5.236478 ACGATTTATACGCCATTGGAAGAAG 59.764 40.000 6.95 0.00 0.00 2.85
2054 2316 5.007234 CACGATTTATACGCCATTGGAAGAA 59.993 40.000 6.95 0.00 0.00 2.52
2055 2317 4.509970 CACGATTTATACGCCATTGGAAGA 59.490 41.667 6.95 0.00 0.00 2.87
2056 2318 4.272504 ACACGATTTATACGCCATTGGAAG 59.727 41.667 6.95 1.75 0.00 3.46
2057 2319 4.193090 ACACGATTTATACGCCATTGGAA 58.807 39.130 6.95 0.00 0.00 3.53
2058 2320 3.799366 ACACGATTTATACGCCATTGGA 58.201 40.909 6.95 0.00 0.00 3.53
2059 2321 3.059188 GGACACGATTTATACGCCATTGG 60.059 47.826 0.00 0.00 0.00 3.16
2060 2322 3.362596 CGGACACGATTTATACGCCATTG 60.363 47.826 0.00 0.00 44.60 2.82
2061 2323 2.798283 CGGACACGATTTATACGCCATT 59.202 45.455 0.00 0.00 44.60 3.16
2062 2324 2.034939 TCGGACACGATTTATACGCCAT 59.965 45.455 0.00 0.00 45.59 4.40
2063 2325 1.404748 TCGGACACGATTTATACGCCA 59.595 47.619 0.00 0.00 45.59 5.69
2064 2326 2.124011 TCGGACACGATTTATACGCC 57.876 50.000 0.00 0.00 45.59 5.68
2075 2337 2.202797 CTGATGGGCTCGGACACG 60.203 66.667 0.00 0.00 42.74 4.49
2076 2338 2.512515 GCTGATGGGCTCGGACAC 60.513 66.667 0.00 0.00 31.20 3.67
2077 2339 3.785859 GGCTGATGGGCTCGGACA 61.786 66.667 0.00 0.00 38.28 4.02
2078 2340 4.554036 GGGCTGATGGGCTCGGAC 62.554 72.222 0.00 0.00 37.57 4.79
2080 2342 4.864334 GTGGGCTGATGGGCTCGG 62.864 72.222 0.00 0.00 40.65 4.63
2081 2343 4.864334 GGTGGGCTGATGGGCTCG 62.864 72.222 0.00 0.00 40.65 5.03
2082 2344 4.864334 CGGTGGGCTGATGGGCTC 62.864 72.222 0.00 0.00 40.65 4.70
2103 2365 1.228429 ACAAACGTGATGGTGGGGG 60.228 57.895 6.56 0.00 0.00 5.40
2104 2366 1.523154 CCACAAACGTGATGGTGGGG 61.523 60.000 16.20 5.59 45.48 4.96
2105 2367 1.956043 CCACAAACGTGATGGTGGG 59.044 57.895 16.20 7.29 45.48 4.61
2107 2369 1.082169 CGCCACAAACGTGATGGTG 60.082 57.895 12.97 11.97 36.43 4.17
2108 2370 0.605319 ATCGCCACAAACGTGATGGT 60.605 50.000 12.97 0.00 36.43 3.55
2109 2371 0.179192 CATCGCCACAAACGTGATGG 60.179 55.000 8.31 8.31 42.11 3.51
2110 2372 0.179192 CCATCGCCACAAACGTGATG 60.179 55.000 0.00 4.72 44.31 3.07
2111 2373 1.922135 GCCATCGCCACAAACGTGAT 61.922 55.000 0.00 0.00 36.43 3.06
2112 2374 2.612567 GCCATCGCCACAAACGTGA 61.613 57.895 0.00 0.00 36.43 4.35
2113 2375 2.126888 GCCATCGCCACAAACGTG 60.127 61.111 0.00 0.00 0.00 4.49
2114 2376 3.722295 CGCCATCGCCACAAACGT 61.722 61.111 0.00 0.00 0.00 3.99
2115 2377 3.418913 TCGCCATCGCCACAAACG 61.419 61.111 0.00 0.00 35.26 3.60
2116 2378 2.175811 GTCGCCATCGCCACAAAC 59.824 61.111 0.00 0.00 35.26 2.93
2117 2379 3.418913 CGTCGCCATCGCCACAAA 61.419 61.111 0.00 0.00 35.26 2.83
2145 2407 3.324099 CTCACCACCGTCGACCTCG 62.324 68.421 10.58 0.00 41.45 4.63
2146 2408 2.567049 CTCACCACCGTCGACCTC 59.433 66.667 10.58 0.00 0.00 3.85
2147 2409 2.989824 CCTCACCACCGTCGACCT 60.990 66.667 10.58 0.00 0.00 3.85
2148 2410 4.736896 GCCTCACCACCGTCGACC 62.737 72.222 10.58 0.00 0.00 4.79
2152 2414 4.436998 CTCCGCCTCACCACCGTC 62.437 72.222 0.00 0.00 0.00 4.79
2173 2435 4.077188 GTCTGTGCCAGCGCGTTC 62.077 66.667 8.43 0.00 38.08 3.95
2245 2507 3.984193 CTCTGGGGCCAAGGCTTCG 62.984 68.421 8.41 0.00 41.60 3.79
2246 2508 2.044551 CTCTGGGGCCAAGGCTTC 60.045 66.667 8.41 4.33 41.60 3.86
2247 2509 3.665971 CCTCTGGGGCCAAGGCTT 61.666 66.667 8.41 0.00 41.60 4.35
2249 2511 4.748144 CACCTCTGGGGCCAAGGC 62.748 72.222 8.41 1.52 39.10 4.35
2250 2512 2.311854 ATCACCTCTGGGGCCAAGG 61.312 63.158 8.41 12.48 39.10 3.61
2251 2513 1.077212 CATCACCTCTGGGGCCAAG 60.077 63.158 4.39 2.63 39.10 3.61
2252 2514 3.089838 CATCACCTCTGGGGCCAA 58.910 61.111 4.39 0.00 39.10 4.52
2253 2515 3.731728 GCATCACCTCTGGGGCCA 61.732 66.667 4.39 0.00 39.10 5.36
2254 2516 4.512914 GGCATCACCTCTGGGGCC 62.513 72.222 0.00 0.00 39.10 5.80
2255 2517 2.578586 AATGGCATCACCTCTGGGGC 62.579 60.000 0.00 0.00 40.22 5.80
2256 2518 0.466922 GAATGGCATCACCTCTGGGG 60.467 60.000 0.00 0.00 40.22 4.96
2257 2519 0.256752 TGAATGGCATCACCTCTGGG 59.743 55.000 0.00 0.00 40.22 4.45
2258 2520 2.359981 ATGAATGGCATCACCTCTGG 57.640 50.000 0.00 0.00 40.22 3.86
2267 2529 2.516695 TGCGCGGATGAATGGCAT 60.517 55.556 8.83 0.00 40.77 4.40
2268 2530 3.204119 CTGCGCGGATGAATGGCA 61.204 61.111 11.90 0.00 0.00 4.92
2269 2531 4.619140 GCTGCGCGGATGAATGGC 62.619 66.667 23.20 0.00 0.00 4.40
2270 2532 3.957535 GGCTGCGCGGATGAATGG 61.958 66.667 23.20 0.00 0.00 3.16
2271 2533 4.303603 CGGCTGCGCGGATGAATG 62.304 66.667 23.20 0.00 0.00 2.67
2272 2534 4.529219 TCGGCTGCGCGGATGAAT 62.529 61.111 23.20 0.00 33.15 2.57
2288 2550 2.101380 GAGCAGCTCGACCTCGTC 59.899 66.667 6.67 0.00 40.80 4.20
2289 2551 2.268802 TTGAGCAGCTCGACCTCGT 61.269 57.895 17.81 0.00 40.80 4.18
2290 2552 1.803519 GTTGAGCAGCTCGACCTCG 60.804 63.158 27.15 0.00 38.56 4.63
2291 2553 0.457681 GAGTTGAGCAGCTCGACCTC 60.458 60.000 31.70 24.48 43.79 3.85
2292 2554 1.589113 GAGTTGAGCAGCTCGACCT 59.411 57.895 31.70 21.60 43.79 3.85
2293 2555 4.177229 GAGTTGAGCAGCTCGACC 57.823 61.111 31.70 21.79 43.79 4.79
2297 2559 3.184683 CCGCGAGTTGAGCAGCTC 61.185 66.667 16.21 16.21 35.64 4.09
2298 2560 4.749310 CCCGCGAGTTGAGCAGCT 62.749 66.667 8.23 0.00 34.19 4.24
2300 2562 2.811317 GACCCGCGAGTTGAGCAG 60.811 66.667 8.23 0.00 34.19 4.24
2301 2563 4.717629 CGACCCGCGAGTTGAGCA 62.718 66.667 8.23 0.00 44.57 4.26
2312 2574 2.203972 TTACAGAGGAACGCGACCCG 62.204 60.000 15.93 9.79 44.21 5.28
2313 2575 0.458025 CTTACAGAGGAACGCGACCC 60.458 60.000 15.93 13.67 0.00 4.46
2314 2576 0.243095 ACTTACAGAGGAACGCGACC 59.757 55.000 15.93 16.25 0.00 4.79
2315 2577 1.068748 TGACTTACAGAGGAACGCGAC 60.069 52.381 15.93 6.28 0.00 5.19
2316 2578 1.068748 GTGACTTACAGAGGAACGCGA 60.069 52.381 15.93 0.00 0.00 5.87
2317 2579 1.337821 GTGACTTACAGAGGAACGCG 58.662 55.000 3.53 3.53 0.00 6.01
2318 2580 1.068748 TCGTGACTTACAGAGGAACGC 60.069 52.381 0.00 0.00 37.87 4.84
2319 2581 2.582687 GTCGTGACTTACAGAGGAACG 58.417 52.381 0.00 0.00 38.75 3.95
2320 2582 2.295349 TGGTCGTGACTTACAGAGGAAC 59.705 50.000 0.00 0.00 0.00 3.62
2321 2583 2.295349 GTGGTCGTGACTTACAGAGGAA 59.705 50.000 0.00 0.00 0.00 3.36
2322 2584 1.884579 GTGGTCGTGACTTACAGAGGA 59.115 52.381 0.00 0.00 0.00 3.71
2323 2585 1.067776 GGTGGTCGTGACTTACAGAGG 60.068 57.143 0.00 0.00 0.00 3.69
2324 2586 1.067776 GGGTGGTCGTGACTTACAGAG 60.068 57.143 0.00 0.00 0.00 3.35
2325 2587 0.963962 GGGTGGTCGTGACTTACAGA 59.036 55.000 0.00 0.00 0.00 3.41
2326 2588 0.037605 GGGGTGGTCGTGACTTACAG 60.038 60.000 0.00 0.00 0.00 2.74
2327 2589 0.759812 TGGGGTGGTCGTGACTTACA 60.760 55.000 0.00 0.00 0.00 2.41
2328 2590 0.320160 GTGGGGTGGTCGTGACTTAC 60.320 60.000 0.00 0.44 0.00 2.34
2329 2591 1.474332 GGTGGGGTGGTCGTGACTTA 61.474 60.000 0.00 0.00 0.00 2.24
2330 2592 2.814835 GGTGGGGTGGTCGTGACTT 61.815 63.158 0.00 0.00 0.00 3.01
2331 2593 3.239253 GGTGGGGTGGTCGTGACT 61.239 66.667 0.00 0.00 0.00 3.41
2332 2594 4.324991 GGGTGGGGTGGTCGTGAC 62.325 72.222 0.00 0.00 0.00 3.67
2341 2603 4.980476 AATGGGGTGGGGTGGGGT 62.980 66.667 0.00 0.00 0.00 4.95
2342 2604 2.704654 AAAAATGGGGTGGGGTGGGG 62.705 60.000 0.00 0.00 0.00 4.96
2343 2605 1.151921 AAAAATGGGGTGGGGTGGG 60.152 57.895 0.00 0.00 0.00 4.61
2344 2606 2.065483 CAAAAATGGGGTGGGGTGG 58.935 57.895 0.00 0.00 0.00 4.61
2345 2607 1.374568 GCAAAAATGGGGTGGGGTG 59.625 57.895 0.00 0.00 0.00 4.61
2346 2608 0.695803 TTGCAAAAATGGGGTGGGGT 60.696 50.000 0.00 0.00 0.00 4.95
2347 2609 0.250684 GTTGCAAAAATGGGGTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
2348 2610 0.471617 TGTTGCAAAAATGGGGTGGG 59.528 50.000 0.00 0.00 0.00 4.61
2349 2611 2.338577 TTGTTGCAAAAATGGGGTGG 57.661 45.000 0.00 0.00 0.00 4.61
2350 2612 4.708726 TTTTTGTTGCAAAAATGGGGTG 57.291 36.364 13.63 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.