Multiple sequence alignment - TraesCS3A01G196500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G196500 chr3A 100.000 2636 0 0 1 2636 298372023 298369388 0.000000e+00 4868.0
1 TraesCS3A01G196500 chr3A 92.035 2373 181 5 1 2369 298397054 298394686 0.000000e+00 3328.0
2 TraesCS3A01G196500 chr3A 89.626 2458 202 22 182 2636 298404558 298402151 0.000000e+00 3077.0
3 TraesCS3A01G196500 chr3A 92.382 722 54 1 1916 2636 270755666 270754945 0.000000e+00 1027.0
4 TraesCS3A01G196500 chr3A 91.907 729 57 2 1909 2636 270760488 270759761 0.000000e+00 1018.0
5 TraesCS3A01G196500 chr3A 91.482 587 45 3 2050 2636 304543924 304544505 0.000000e+00 802.0
6 TraesCS3A01G196500 chr3A 89.965 578 52 5 2050 2627 304551627 304552198 0.000000e+00 741.0
7 TraesCS3A01G196500 chr3A 84.322 708 81 23 1 688 242389586 242390283 0.000000e+00 665.0
8 TraesCS3A01G196500 chr3A 77.834 785 130 34 1 760 350531681 350532446 1.860000e-121 446.0
9 TraesCS3A01G196500 chr3A 81.378 537 70 22 1 518 144369873 144370398 6.790000e-111 411.0
10 TraesCS3A01G196500 chr3A 87.654 243 26 4 989 1229 288745865 288746105 2.000000e-71 279.0
11 TraesCS3A01G196500 chr3A 87.719 171 17 4 1141 1309 220774610 220774442 2.070000e-46 196.0
12 TraesCS3A01G196500 chr3A 93.846 65 3 1 908 972 396591813 396591876 2.160000e-16 97.1
13 TraesCS3A01G196500 chr4A 81.207 1309 171 54 1365 2636 426445971 426444701 0.000000e+00 985.0
14 TraesCS3A01G196500 chr4A 79.792 1346 178 65 1328 2630 426437556 426436262 0.000000e+00 893.0
15 TraesCS3A01G196500 chr4A 82.097 782 113 22 2 765 272732621 272733393 0.000000e+00 643.0
16 TraesCS3A01G196500 chr4A 91.497 294 21 4 835 1126 70896463 70896172 4.090000e-108 401.0
17 TraesCS3A01G196500 chr4A 88.115 244 24 5 987 1227 263897636 263897395 4.290000e-73 285.0
18 TraesCS3A01G196500 chr4A 90.141 213 20 1 1361 1573 277542956 277543167 2.580000e-70 276.0
19 TraesCS3A01G196500 chr4A 88.372 172 20 0 1138 1309 214278677 214278848 9.560000e-50 207.0
20 TraesCS3A01G196500 chr4A 85.965 171 24 0 1139 1309 214229405 214229575 1.610000e-42 183.0
21 TraesCS3A01G196500 chr4A 86.842 76 6 4 894 967 270685694 270685621 6.050000e-12 82.4
22 TraesCS3A01G196500 chr1A 83.317 1019 127 32 1628 2636 357479991 357480976 0.000000e+00 900.0
23 TraesCS3A01G196500 chr1A 82.694 1017 126 34 1628 2636 357494590 357495564 0.000000e+00 857.0
24 TraesCS3A01G196500 chr1A 81.970 1015 134 37 1636 2636 281398312 281397333 0.000000e+00 815.0
25 TraesCS3A01G196500 chr1A 81.961 1020 124 45 1636 2636 281412504 281411526 0.000000e+00 809.0
26 TraesCS3A01G196500 chr1A 90.136 294 25 4 835 1126 100884320 100884029 1.910000e-101 379.0
27 TraesCS3A01G196500 chr1A 87.234 235 23 6 961 1191 135528764 135528533 7.240000e-66 261.0
28 TraesCS3A01G196500 chr2A 87.680 763 75 11 1 751 239452580 239451825 0.000000e+00 870.0
29 TraesCS3A01G196500 chr2A 84.981 779 91 22 1 765 416727532 416728298 0.000000e+00 767.0
30 TraesCS3A01G196500 chr2A 88.676 574 54 9 182 751 239470869 239470303 0.000000e+00 689.0
31 TraesCS3A01G196500 chr2A 82.157 779 110 23 1 761 124337165 124336398 2.210000e-180 641.0
32 TraesCS3A01G196500 chr2A 85.586 333 38 4 1303 1633 637095058 637095382 9.040000e-90 340.0
33 TraesCS3A01G196500 chr5A 82.041 1019 144 30 1628 2636 212978848 212979837 0.000000e+00 832.0
34 TraesCS3A01G196500 chr5A 87.285 582 52 19 2053 2625 97788265 97788833 0.000000e+00 645.0
35 TraesCS3A01G196500 chr5A 88.822 331 36 1 1303 1633 283760188 283759859 3.160000e-109 405.0
36 TraesCS3A01G196500 chr5A 88.218 331 39 0 1303 1633 283792662 283792332 1.900000e-106 396.0
37 TraesCS3A01G196500 chr5A 84.290 331 51 1 1303 1633 541322808 541323137 3.270000e-84 322.0
38 TraesCS3A01G196500 chr5A 91.509 106 7 2 831 934 136737905 136738010 7.600000e-31 145.0
39 TraesCS3A01G196500 chr5A 92.473 93 6 1 835 926 136734116 136734208 5.920000e-27 132.0
40 TraesCS3A01G196500 chr7A 89.542 612 62 2 835 1444 152816281 152815670 0.000000e+00 774.0
41 TraesCS3A01G196500 chr7A 88.926 605 62 4 835 1437 152823879 152823278 0.000000e+00 741.0
42 TraesCS3A01G196500 chr7A 79.883 681 90 39 1969 2631 355762729 355763380 3.090000e-124 455.0
43 TraesCS3A01G196500 chr7A 78.414 681 101 35 1969 2631 355307169 355306517 4.090000e-108 401.0
44 TraesCS3A01G196500 chr7A 88.535 314 35 1 1320 1633 316589684 316589996 1.910000e-101 379.0
45 TraesCS3A01G196500 chr7A 90.411 73 4 3 835 906 616028908 616028978 2.790000e-15 93.5
46 TraesCS3A01G196500 chr6A 88.727 550 52 8 2079 2625 429938181 429937639 0.000000e+00 664.0
47 TraesCS3A01G196500 chr6A 87.609 573 58 9 2056 2625 429933436 429932874 0.000000e+00 652.0
48 TraesCS3A01G196500 chr6A 86.047 86 9 2 1384 1469 175911339 175911257 3.610000e-14 89.8
49 TraesCS3A01G196500 chr4D 82.181 752 108 22 1 738 251278042 251278781 8.010000e-175 623.0
50 TraesCS3A01G196500 chr7D 78.084 689 102 35 1958 2636 153368533 153369182 8.850000e-105 390.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G196500 chr3A 298369388 298372023 2635 True 4868 4868 100.000 1 2636 1 chr3A.!!$R4 2635
1 TraesCS3A01G196500 chr3A 298394686 298397054 2368 True 3328 3328 92.035 1 2369 1 chr3A.!!$R5 2368
2 TraesCS3A01G196500 chr3A 298402151 298404558 2407 True 3077 3077 89.626 182 2636 1 chr3A.!!$R6 2454
3 TraesCS3A01G196500 chr3A 270754945 270755666 721 True 1027 1027 92.382 1916 2636 1 chr3A.!!$R2 720
4 TraesCS3A01G196500 chr3A 270759761 270760488 727 True 1018 1018 91.907 1909 2636 1 chr3A.!!$R3 727
5 TraesCS3A01G196500 chr3A 304543924 304544505 581 False 802 802 91.482 2050 2636 1 chr3A.!!$F4 586
6 TraesCS3A01G196500 chr3A 304551627 304552198 571 False 741 741 89.965 2050 2627 1 chr3A.!!$F5 577
7 TraesCS3A01G196500 chr3A 242389586 242390283 697 False 665 665 84.322 1 688 1 chr3A.!!$F2 687
8 TraesCS3A01G196500 chr3A 350531681 350532446 765 False 446 446 77.834 1 760 1 chr3A.!!$F6 759
9 TraesCS3A01G196500 chr3A 144369873 144370398 525 False 411 411 81.378 1 518 1 chr3A.!!$F1 517
10 TraesCS3A01G196500 chr4A 426444701 426445971 1270 True 985 985 81.207 1365 2636 1 chr4A.!!$R5 1271
11 TraesCS3A01G196500 chr4A 426436262 426437556 1294 True 893 893 79.792 1328 2630 1 chr4A.!!$R4 1302
12 TraesCS3A01G196500 chr4A 272732621 272733393 772 False 643 643 82.097 2 765 1 chr4A.!!$F3 763
13 TraesCS3A01G196500 chr1A 357479991 357480976 985 False 900 900 83.317 1628 2636 1 chr1A.!!$F1 1008
14 TraesCS3A01G196500 chr1A 357494590 357495564 974 False 857 857 82.694 1628 2636 1 chr1A.!!$F2 1008
15 TraesCS3A01G196500 chr1A 281397333 281398312 979 True 815 815 81.970 1636 2636 1 chr1A.!!$R3 1000
16 TraesCS3A01G196500 chr1A 281411526 281412504 978 True 809 809 81.961 1636 2636 1 chr1A.!!$R4 1000
17 TraesCS3A01G196500 chr2A 239451825 239452580 755 True 870 870 87.680 1 751 1 chr2A.!!$R2 750
18 TraesCS3A01G196500 chr2A 416727532 416728298 766 False 767 767 84.981 1 765 1 chr2A.!!$F1 764
19 TraesCS3A01G196500 chr2A 239470303 239470869 566 True 689 689 88.676 182 751 1 chr2A.!!$R3 569
20 TraesCS3A01G196500 chr2A 124336398 124337165 767 True 641 641 82.157 1 761 1 chr2A.!!$R1 760
21 TraesCS3A01G196500 chr5A 212978848 212979837 989 False 832 832 82.041 1628 2636 1 chr5A.!!$F2 1008
22 TraesCS3A01G196500 chr5A 97788265 97788833 568 False 645 645 87.285 2053 2625 1 chr5A.!!$F1 572
23 TraesCS3A01G196500 chr7A 152815670 152816281 611 True 774 774 89.542 835 1444 1 chr7A.!!$R1 609
24 TraesCS3A01G196500 chr7A 152823278 152823879 601 True 741 741 88.926 835 1437 1 chr7A.!!$R2 602
25 TraesCS3A01G196500 chr7A 355762729 355763380 651 False 455 455 79.883 1969 2631 1 chr7A.!!$F2 662
26 TraesCS3A01G196500 chr7A 355306517 355307169 652 True 401 401 78.414 1969 2631 1 chr7A.!!$R3 662
27 TraesCS3A01G196500 chr6A 429937639 429938181 542 True 664 664 88.727 2079 2625 1 chr6A.!!$R3 546
28 TraesCS3A01G196500 chr6A 429932874 429933436 562 True 652 652 87.609 2056 2625 1 chr6A.!!$R2 569
29 TraesCS3A01G196500 chr4D 251278042 251278781 739 False 623 623 82.181 1 738 1 chr4D.!!$F1 737
30 TraesCS3A01G196500 chr7D 153368533 153369182 649 False 390 390 78.084 1958 2636 1 chr7D.!!$F1 678


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 861 0.341258 AGAGAGAATCCCAGCCCAGA 59.659 55.0 0.0 0.0 33.66 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 1943 0.102481 CCGATCCCGTCAACTCGAAT 59.898 55.0 0.0 0.0 33.07 3.34 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 238 4.939439 GCTTCAAATGCCTTCCATGATTTT 59.061 37.500 0.00 0.00 33.49 1.82
323 348 8.730680 GCATCTCTTCTTAAAACTCAACCAATA 58.269 33.333 0.00 0.00 0.00 1.90
350 375 9.956720 AAATTGTATGGATCTTCGATTCATTTC 57.043 29.630 3.16 0.00 0.00 2.17
451 480 2.544903 CCGTTGTTTTGGAATCACCCAC 60.545 50.000 0.00 0.00 35.62 4.61
478 507 5.205056 CCCACTTGCATATTAAACCCCTTA 58.795 41.667 0.00 0.00 0.00 2.69
539 569 7.234577 TGCCAATAATTCTTTTACCACTTTCCT 59.765 33.333 0.00 0.00 0.00 3.36
543 573 9.807921 AATAATTCTTTTACCACTTTCCTGAGA 57.192 29.630 0.00 0.00 0.00 3.27
556 586 7.177392 CCACTTTCCTGAGATCTACCAAAATTT 59.823 37.037 0.00 0.00 0.00 1.82
562 592 6.403636 CCTGAGATCTACCAAAATTTCCAACG 60.404 42.308 0.00 0.00 0.00 4.10
723 758 1.664016 CGCTTGCGCAAATTCTTGTCT 60.664 47.619 25.01 0.00 34.79 3.41
813 850 5.194537 AGAAGAAGAGAGAGGGAGAGAGAAT 59.805 44.000 0.00 0.00 0.00 2.40
824 861 0.341258 AGAGAGAATCCCAGCCCAGA 59.659 55.000 0.00 0.00 33.66 3.86
825 862 1.207791 GAGAGAATCCCAGCCCAGAA 58.792 55.000 0.00 0.00 33.66 3.02
875 913 2.117051 CCACCTAACCCTCTAACCCTC 58.883 57.143 0.00 0.00 0.00 4.30
889 927 2.439701 CCTCGACCGCACCCTAGA 60.440 66.667 0.00 0.00 0.00 2.43
900 938 1.580059 CACCCTAGAAACCCCTAGCA 58.420 55.000 0.00 0.00 35.86 3.49
978 1016 1.736586 CCCATCTCCCTCTCGTTCG 59.263 63.158 0.00 0.00 0.00 3.95
985 1024 4.069232 CCTCTCGTTCGCCCAGCA 62.069 66.667 0.00 0.00 0.00 4.41
989 1028 3.376935 CTCGTTCGCCCAGCATCCT 62.377 63.158 0.00 0.00 0.00 3.24
1083 1122 0.745845 CTCCTTTCTGTGCCATCCCG 60.746 60.000 0.00 0.00 0.00 5.14
1152 1192 1.224039 GCTGCTGCCTCATTCCTCT 59.776 57.895 3.85 0.00 0.00 3.69
1175 1215 1.302285 CCATCAAGCTCTGGCCAGT 59.698 57.895 31.58 10.90 39.73 4.00
1248 1288 1.065854 CATTCCTCAAGCTCTCCGGTT 60.066 52.381 0.00 0.00 0.00 4.44
1313 1353 0.251077 CCAACCTTGCTCCTCTGCTT 60.251 55.000 0.00 0.00 0.00 3.91
1322 1362 1.001631 TCCTCTGCTTCCCGGATCA 59.998 57.895 0.73 0.00 0.00 2.92
1335 1375 2.202878 GATCACGCTGCCGCCTTA 60.203 61.111 0.00 0.00 38.22 2.69
1359 1399 4.600576 TCGAGCTGCGCCACAACA 62.601 61.111 4.18 0.00 40.61 3.33
1363 1403 1.003355 AGCTGCGCCACAACACTAT 60.003 52.632 4.18 0.00 0.00 2.12
1372 1412 3.368013 CGCCACAACACTATGTTCCTCTA 60.368 47.826 0.00 0.00 38.77 2.43
1452 1492 0.744414 GCTCCATTAGGTCGCAAGCA 60.744 55.000 0.00 0.00 31.80 3.91
1453 1493 1.959042 CTCCATTAGGTCGCAAGCAT 58.041 50.000 0.00 0.00 35.89 3.79
1488 1528 4.796231 GCTTCGCCTTCTCGCCGA 62.796 66.667 0.00 0.00 0.00 5.54
1581 1621 2.668632 GCGGTCTCCAATGTCCCA 59.331 61.111 0.00 0.00 0.00 4.37
1602 1642 4.435436 CACCTCCGCGTGCTGCTA 62.435 66.667 4.92 0.00 43.27 3.49
1644 1684 1.766143 CTAACGAATGAGCAGCGCCC 61.766 60.000 2.29 0.00 0.00 6.13
1679 1721 0.984230 AAGTCCCCGCTCTGATGAAA 59.016 50.000 0.00 0.00 0.00 2.69
1689 1731 4.470462 CGCTCTGATGAAAGTTTTGGAAG 58.530 43.478 0.00 0.00 0.00 3.46
1736 1780 5.273208 AGACCATGTACAACTACTGATCCT 58.727 41.667 0.00 0.00 0.00 3.24
1740 1784 5.105351 CCATGTACAACTACTGATCCTGTGA 60.105 44.000 0.00 0.00 0.00 3.58
1763 1807 1.475682 GTCACCAAGTACCTCTACCGG 59.524 57.143 0.00 0.00 0.00 5.28
1766 1810 1.318158 CCAAGTACCTCTACCGGCGT 61.318 60.000 6.01 0.00 0.00 5.68
1898 1943 1.075374 AGCAGAAATGCCAAGTACCCA 59.925 47.619 0.00 0.00 34.90 4.51
1911 1956 1.203994 AGTACCCATTCGAGTTGACGG 59.796 52.381 0.00 0.00 0.00 4.79
1926 1971 2.890474 CGGGATCGGCAAGTTCGG 60.890 66.667 0.00 0.00 0.00 4.30
2037 2099 2.283145 ACACCTACGGAGTGTGTACT 57.717 50.000 17.23 0.00 46.43 2.73
2043 2109 5.355071 CACCTACGGAGTGTGTACTAATACA 59.645 44.000 7.81 0.00 45.73 2.29
2102 2169 2.867624 ACGTCTACTTCCACTACACCA 58.132 47.619 0.00 0.00 0.00 4.17
2432 2541 2.200337 GCACCCTTTTGTTCCGCCT 61.200 57.895 0.00 0.00 0.00 5.52
2562 2682 9.662545 ATTGTTGTTTGCATTAAATTGCTAAAC 57.337 25.926 15.01 15.01 43.18 2.01
2593 2714 4.278419 GGGATTCTCCGGAATTATTGTTGG 59.722 45.833 5.23 0.00 41.68 3.77
2607 2728 1.835494 TGTTGGTTGTTGTTTCCGGA 58.165 45.000 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.573133 AACAAAGATGAACAAAGTAGAAAACAG 57.427 29.630 0.00 0.00 0.00 3.16
56 58 4.290722 ACCAAGAACCTGGAGAGATTGAAT 59.709 41.667 0.00 0.00 38.96 2.57
138 149 3.702147 TCGTCCCGAGATCTAGGAC 57.298 57.895 25.10 25.10 45.49 3.85
224 238 2.094906 ACAAATCACCGACGAATCTCGA 60.095 45.455 2.59 0.00 43.74 4.04
432 461 2.359531 TCGTGGGTGATTCCAAAACAAC 59.640 45.455 0.00 0.00 38.72 3.32
451 480 4.439563 GGGTTTAATATGCAAGTGGGTTCG 60.440 45.833 0.00 0.00 0.00 3.95
478 507 6.153510 AGTCAAAACTTGAAGAAGAAAAGGCT 59.846 34.615 0.00 0.00 42.15 4.58
539 569 6.001460 ACGTTGGAAATTTTGGTAGATCTCA 58.999 36.000 0.00 0.00 0.00 3.27
543 573 8.137210 CAAAAACGTTGGAAATTTTGGTAGAT 57.863 30.769 0.00 0.00 38.47 1.98
556 586 3.068560 CGATAGGTCCAAAAACGTTGGA 58.931 45.455 0.00 1.57 45.61 3.53
562 592 5.065602 GTGGGTATTCGATAGGTCCAAAAAC 59.934 44.000 0.00 0.00 0.00 2.43
875 913 1.447314 GGTTTCTAGGGTGCGGTCG 60.447 63.158 0.00 0.00 0.00 4.79
889 927 1.632965 GGGGATCGTGCTAGGGGTTT 61.633 60.000 0.00 0.00 0.00 3.27
900 938 0.688087 GAAGAGGGTGAGGGGATCGT 60.688 60.000 0.00 0.00 0.00 3.73
955 993 1.074926 GAGAGGGAGATGGGGAGCA 60.075 63.158 0.00 0.00 0.00 4.26
1083 1122 0.687354 TCCTGGCAGTTGAGGAAGAC 59.313 55.000 14.43 0.00 35.33 3.01
1131 1171 2.119655 GGAATGAGGCAGCAGCAGG 61.120 63.158 2.65 0.00 44.61 4.85
1152 1192 2.437180 CAGAGCTTGATGGCGGCA 60.437 61.111 16.34 16.34 37.29 5.69
1173 1213 3.003113 GCGCCGGAGTTGACCTACT 62.003 63.158 5.05 0.00 0.00 2.57
1175 1215 3.766691 GGCGCCGGAGTTGACCTA 61.767 66.667 12.58 0.00 0.00 3.08
1215 1255 2.184322 GAATGGCGCGACAGAGGA 59.816 61.111 23.88 0.00 0.00 3.71
1290 1330 3.185203 AGGAGCAAGGTTGGGGCA 61.185 61.111 0.00 0.00 0.00 5.36
1298 1338 1.077858 GGGAAGCAGAGGAGCAAGG 60.078 63.158 0.00 0.00 36.85 3.61
1301 1341 3.393970 CCGGGAAGCAGAGGAGCA 61.394 66.667 0.00 0.00 36.85 4.26
1359 1399 2.664015 GTCGGGGTAGAGGAACATAGT 58.336 52.381 0.00 0.00 0.00 2.12
1363 1403 0.115745 AAGGTCGGGGTAGAGGAACA 59.884 55.000 0.00 0.00 0.00 3.18
1488 1528 3.377656 ACGCAGTGACCCGATCTT 58.622 55.556 0.00 0.00 42.51 2.40
1565 1605 0.391661 CACTGGGACATTGGAGACCG 60.392 60.000 0.00 0.00 38.20 4.79
1573 1613 1.380302 GGAGGTGCACTGGGACATT 59.620 57.895 17.98 0.00 38.20 2.71
1574 1614 2.959484 CGGAGGTGCACTGGGACAT 61.959 63.158 17.98 0.00 38.20 3.06
1602 1642 2.660552 CGACTTGGCGTCAACGGT 60.661 61.111 0.00 0.00 42.98 4.83
1644 1684 1.170290 ACTTGGCGAAAAACCCCGAG 61.170 55.000 0.00 0.00 36.42 4.63
1689 1731 3.308530 GCATTGTAGTTTGACTTGGTGC 58.691 45.455 0.00 0.00 0.00 5.01
1736 1780 3.646162 AGAGGTACTTGGTGACATTCACA 59.354 43.478 8.50 0.00 44.98 3.58
1740 1784 3.194968 CGGTAGAGGTACTTGGTGACATT 59.805 47.826 0.00 0.00 41.55 2.71
1763 1807 2.838386 TACGTAGATGTTCAGGACGC 57.162 50.000 0.00 0.00 37.02 5.19
1766 1810 5.654603 ACACATTACGTAGATGTTCAGGA 57.345 39.130 15.95 0.00 35.64 3.86
1898 1943 0.102481 CCGATCCCGTCAACTCGAAT 59.898 55.000 0.00 0.00 33.07 3.34
1911 1956 0.806492 GTCTCCGAACTTGCCGATCC 60.806 60.000 0.00 0.00 0.00 3.36
1926 1971 1.477295 CGAAGAGGTACTTGGGGTCTC 59.523 57.143 0.00 0.00 41.55 3.36
2037 2099 8.025445 GGAAGTAGTCGTTCTCACTTTGTATTA 58.975 37.037 0.00 0.00 31.57 0.98
2043 2109 4.341520 AGTGGAAGTAGTCGTTCTCACTTT 59.658 41.667 0.00 0.00 34.49 2.66
2115 2182 1.873165 GTGCATTTTTCGGAGCGGA 59.127 52.632 0.00 0.00 0.00 5.54
2272 2354 3.459386 GGGAGTGATCCCGGATACT 57.541 57.895 0.73 4.75 40.59 2.12
2432 2541 2.499197 TGTTAGAGCATTTGTCGCCAA 58.501 42.857 0.00 0.00 0.00 4.52
2485 2601 2.245096 GCGAATGACATGTGCAAGTTC 58.755 47.619 1.15 2.82 0.00 3.01
2593 2714 1.324383 ATGGGTCCGGAAACAACAAC 58.676 50.000 5.23 0.00 0.00 3.32
2607 2728 8.823220 ACACTATCTAAGCAATTTAAATGGGT 57.177 30.769 0.39 0.84 0.00 4.51



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.