Multiple sequence alignment - TraesCS3A01G195800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G195800 chr3A 100.000 3244 0 0 1 3244 291786392 291783149 0.000000e+00 5991
1 TraesCS3A01G195800 chr3A 83.246 191 20 4 1374 1552 291784895 291784705 7.200000e-37 165
2 TraesCS3A01G195800 chr3A 83.246 191 20 4 1498 1688 291785019 291784841 7.200000e-37 165
3 TraesCS3A01G195800 chr2B 96.191 1654 50 2 4 1656 772455500 772453859 0.000000e+00 2693
4 TraesCS3A01G195800 chr2B 93.258 979 47 11 1404 2379 772454160 772453198 0.000000e+00 1424
5 TraesCS3A01G195800 chr2B 96.526 662 17 3 2272 2931 772453204 772452547 0.000000e+00 1090
6 TraesCS3A01G195800 chr2B 81.450 469 81 5 297 764 25340876 25340413 2.360000e-101 379
7 TraesCS3A01G195800 chr2B 81.818 242 43 1 1344 1584 772454129 772453888 5.490000e-48 202
8 TraesCS3A01G195800 chr2B 78.912 294 46 8 1436 1728 772454159 772453881 5.530000e-43 185
9 TraesCS3A01G195800 chr2B 81.448 221 29 4 1498 1718 772454129 772453921 1.550000e-38 171
10 TraesCS3A01G195800 chr2B 90.625 96 7 2 3151 3244 230162438 230162343 3.400000e-25 126
11 TraesCS3A01G195800 chr7A 97.273 880 19 3 2054 2928 603530703 603529824 0.000000e+00 1487
12 TraesCS3A01G195800 chr7A 79.692 778 133 23 3 764 287612036 287612804 3.680000e-149 538
13 TraesCS3A01G195800 chr7A 81.450 469 81 5 297 764 660200537 660200074 2.360000e-101 379
14 TraesCS3A01G195800 chr6B 86.569 953 91 15 1985 2931 116364953 116364032 0.000000e+00 1016
15 TraesCS3A01G195800 chr6B 91.579 95 7 1 3151 3244 149233515 149233609 2.630000e-26 130
16 TraesCS3A01G195800 chr6A 87.150 856 83 13 2077 2928 60722231 60721399 0.000000e+00 946
17 TraesCS3A01G195800 chr3B 79.844 769 136 18 6 764 465044224 465043465 7.920000e-151 544
18 TraesCS3A01G195800 chr3B 91.489 94 7 1 3152 3244 749713525 749713618 9.450000e-26 128
19 TraesCS3A01G195800 chr2A 79.793 772 133 20 6 764 728781907 728781146 1.020000e-149 540
20 TraesCS3A01G195800 chr2A 81.237 469 82 5 297 764 748227220 748227683 1.100000e-99 374
21 TraesCS3A01G195800 chr5A 79.140 767 140 17 7 764 634172105 634171350 2.230000e-141 512
22 TraesCS3A01G195800 chr6D 89.034 383 36 3 2514 2892 54410474 54410854 1.360000e-128 470
23 TraesCS3A01G195800 chr6D 87.917 240 27 1 1985 2222 54383773 54384012 6.850000e-72 281
24 TraesCS3A01G195800 chr6D 93.182 88 6 0 3157 3244 193491058 193490971 2.630000e-26 130
25 TraesCS3A01G195800 chr1A 77.749 764 151 17 10 763 18496013 18495259 4.940000e-123 451
26 TraesCS3A01G195800 chr7B 89.320 103 9 2 3144 3244 17869057 17869159 9.450000e-26 128
27 TraesCS3A01G195800 chr7B 89.216 102 9 2 3144 3244 256184792 256184892 3.400000e-25 126
28 TraesCS3A01G195800 chr5B 89.320 103 9 2 3144 3244 705076519 705076417 9.450000e-26 128
29 TraesCS3A01G195800 chr3D 91.489 94 7 1 3152 3244 409921940 409922033 9.450000e-26 128
30 TraesCS3A01G195800 chr1B 88.350 103 10 2 3144 3244 114874446 114874344 4.400000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G195800 chr3A 291783149 291786392 3243 True 2107.000000 5991 88.830667 1 3244 3 chr3A.!!$R1 3243
1 TraesCS3A01G195800 chr2B 772452547 772455500 2953 True 960.833333 2693 88.025500 4 2931 6 chr2B.!!$R3 2927
2 TraesCS3A01G195800 chr7A 603529824 603530703 879 True 1487.000000 1487 97.273000 2054 2928 1 chr7A.!!$R1 874
3 TraesCS3A01G195800 chr7A 287612036 287612804 768 False 538.000000 538 79.692000 3 764 1 chr7A.!!$F1 761
4 TraesCS3A01G195800 chr6B 116364032 116364953 921 True 1016.000000 1016 86.569000 1985 2931 1 chr6B.!!$R1 946
5 TraesCS3A01G195800 chr6A 60721399 60722231 832 True 946.000000 946 87.150000 2077 2928 1 chr6A.!!$R1 851
6 TraesCS3A01G195800 chr3B 465043465 465044224 759 True 544.000000 544 79.844000 6 764 1 chr3B.!!$R1 758
7 TraesCS3A01G195800 chr2A 728781146 728781907 761 True 540.000000 540 79.793000 6 764 1 chr2A.!!$R1 758
8 TraesCS3A01G195800 chr5A 634171350 634172105 755 True 512.000000 512 79.140000 7 764 1 chr5A.!!$R1 757
9 TraesCS3A01G195800 chr1A 18495259 18496013 754 True 451.000000 451 77.749000 10 763 1 chr1A.!!$R1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 2.095415 GCCGCTTTTCGTGGTAGAAAAT 60.095 45.455 5.51 0.0 45.50 1.82 F
419 433 2.158740 TGAACGAGTGGGGAAACAATCA 60.159 45.455 0.00 0.0 35.34 2.57 F
1771 1788 1.434188 TGGACACACAAGGGAGATGT 58.566 50.000 0.00 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1766 0.036732 TCTCCCTTGTGTGTCCATGC 59.963 55.0 0.00 0.00 0.00 4.06 R
1802 1819 0.037882 ATATCGCGGCCATCTCAGTG 60.038 55.0 6.13 0.00 0.00 3.66 R
3018 3143 0.756294 TGAACACATGTGGTCCGACT 59.244 50.0 34.93 9.14 46.35 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 2.095415 GCCGCTTTTCGTGGTAGAAAAT 60.095 45.455 5.51 0.00 45.50 1.82
211 213 9.088512 CACTAGTTTTACGAGATGCTTTAGAAT 57.911 33.333 0.00 0.00 0.00 2.40
315 329 4.771114 TCACCCACTTGTCCCTTATATG 57.229 45.455 0.00 0.00 0.00 1.78
316 330 4.367166 TCACCCACTTGTCCCTTATATGA 58.633 43.478 0.00 0.00 0.00 2.15
419 433 2.158740 TGAACGAGTGGGGAAACAATCA 60.159 45.455 0.00 0.00 35.34 2.57
832 849 9.559732 TGTTGTAATATCCCTTGACATTATCTG 57.440 33.333 0.00 0.00 0.00 2.90
946 963 4.461081 GGGCATTTGGTTGTGAACTATACA 59.539 41.667 0.00 0.00 0.00 2.29
1041 1058 3.417069 AATCACGGTCTTCATTGGACA 57.583 42.857 0.00 0.00 35.61 4.02
1076 1093 7.652507 GTCCACCTATATGCTTACTCACTTTAC 59.347 40.741 0.00 0.00 0.00 2.01
1080 1097 7.985752 ACCTATATGCTTACTCACTTTACCAAC 59.014 37.037 0.00 0.00 0.00 3.77
1083 1100 4.053295 TGCTTACTCACTTTACCAACGTC 58.947 43.478 0.00 0.00 0.00 4.34
1111 1128 5.297776 GCTAATGGCACTAAGACATCAACAT 59.702 40.000 0.00 0.00 44.97 2.71
1171 1188 9.813446 GAGATTTAAATGATCATTTCAGGCTTT 57.187 29.630 31.70 15.55 40.99 3.51
1389 1406 8.635765 ACCTTTTAGTTGCTGAAATTCATCTA 57.364 30.769 0.00 0.00 0.00 1.98
1483 1500 9.937175 GAGTTATAGTTGCTGGAATCAATTTAC 57.063 33.333 0.00 0.00 0.00 2.01
1491 1508 8.408601 GTTGCTGGAATCAATTTACATATGAGT 58.591 33.333 10.38 0.00 0.00 3.41
1492 1509 8.523915 TGCTGGAATCAATTTACATATGAGTT 57.476 30.769 10.38 0.00 0.00 3.01
1493 1510 8.970020 TGCTGGAATCAATTTACATATGAGTTT 58.030 29.630 10.38 0.00 0.00 2.66
1494 1511 9.241317 GCTGGAATCAATTTACATATGAGTTTG 57.759 33.333 10.38 7.72 0.00 2.93
1508 1525 8.844244 ACATATGAGTTTGAATTGCTAGAATCC 58.156 33.333 10.38 0.00 0.00 3.01
1509 1526 8.843262 CATATGAGTTTGAATTGCTAGAATCCA 58.157 33.333 0.00 0.00 0.00 3.41
1510 1527 7.893124 ATGAGTTTGAATTGCTAGAATCCAT 57.107 32.000 0.00 0.00 0.00 3.41
1511 1528 7.707624 TGAGTTTGAATTGCTAGAATCCATT 57.292 32.000 0.00 0.00 0.00 3.16
1512 1529 8.125978 TGAGTTTGAATTGCTAGAATCCATTT 57.874 30.769 0.00 0.00 0.00 2.32
1513 1530 8.030692 TGAGTTTGAATTGCTAGAATCCATTTG 58.969 33.333 0.00 0.00 0.00 2.32
1514 1531 7.899973 AGTTTGAATTGCTAGAATCCATTTGT 58.100 30.769 0.00 0.00 0.00 2.83
1515 1532 9.023962 AGTTTGAATTGCTAGAATCCATTTGTA 57.976 29.630 0.00 0.00 0.00 2.41
1516 1533 9.807649 GTTTGAATTGCTAGAATCCATTTGTAT 57.192 29.630 0.00 0.00 0.00 2.29
1544 1561 8.461222 TGACTTATAGTTGCTGGAATCAATTTG 58.539 33.333 0.00 0.00 0.00 2.32
1753 1770 6.101332 ACTAATGGTTGTTATTGCTTGCATG 58.899 36.000 0.00 0.00 0.00 4.06
1771 1788 1.434188 TGGACACACAAGGGAGATGT 58.566 50.000 0.00 0.00 0.00 3.06
1802 1819 5.585047 CCTAAACAAACCCATAGAGCACTAC 59.415 44.000 0.00 0.00 0.00 2.73
1814 1831 0.539051 AGCACTACACTGAGATGGCC 59.461 55.000 0.00 0.00 0.00 5.36
1816 1833 0.807667 CACTACACTGAGATGGCCGC 60.808 60.000 0.00 0.00 0.00 6.53
1853 1870 2.413142 GGCTACCGGACAGTACGCT 61.413 63.158 9.46 0.00 0.00 5.07
1870 1887 6.313905 CAGTACGCTAAAGGATCAAATGAACT 59.686 38.462 0.00 0.00 0.00 3.01
1878 1895 5.344743 AGGATCAAATGAACTTCTAGCGA 57.655 39.130 0.00 0.00 0.00 4.93
1882 1899 5.862924 TCAAATGAACTTCTAGCGAAAGG 57.137 39.130 0.00 0.00 0.00 3.11
2022 2039 5.447010 GCAAAAACTTATGCACAACAAAGCA 60.447 36.000 0.00 0.00 45.92 3.91
2062 2079 4.127171 ACATTCACGGCTATTGGTGATAC 58.873 43.478 0.00 0.00 42.27 2.24
2128 2145 1.691196 CCTGCTGGACTTTGGAACAA 58.309 50.000 2.92 0.00 38.83 2.83
2222 2239 0.746204 TTGCACGTGCTTTCCACTCA 60.746 50.000 37.59 14.52 42.42 3.41
2681 2805 4.935205 TGCAACTCAACTGGTATACATCAC 59.065 41.667 5.01 0.00 0.00 3.06
2693 2817 5.123661 TGGTATACATCACATTGTTGCACTG 59.876 40.000 5.01 0.00 0.00 3.66
2920 3045 6.129179 CCCATATCTACACCTTCAACCAAAT 58.871 40.000 0.00 0.00 0.00 2.32
2931 3056 8.333235 ACACCTTCAACCAAATACATCCTAATA 58.667 33.333 0.00 0.00 0.00 0.98
2932 3057 8.621286 CACCTTCAACCAAATACATCCTAATAC 58.379 37.037 0.00 0.00 0.00 1.89
2933 3058 8.333235 ACCTTCAACCAAATACATCCTAATACA 58.667 33.333 0.00 0.00 0.00 2.29
2934 3059 9.354673 CCTTCAACCAAATACATCCTAATACAT 57.645 33.333 0.00 0.00 0.00 2.29
2936 3061 9.913310 TTCAACCAAATACATCCTAATACATCA 57.087 29.630 0.00 0.00 0.00 3.07
2940 3065 8.796475 ACCAAATACATCCTAATACATCATTGC 58.204 33.333 0.00 0.00 0.00 3.56
2941 3066 8.795513 CCAAATACATCCTAATACATCATTGCA 58.204 33.333 0.00 0.00 0.00 4.08
2942 3067 9.836076 CAAATACATCCTAATACATCATTGCAG 57.164 33.333 0.00 0.00 0.00 4.41
2943 3068 5.954296 ACATCCTAATACATCATTGCAGC 57.046 39.130 0.00 0.00 0.00 5.25
2944 3069 5.379187 ACATCCTAATACATCATTGCAGCA 58.621 37.500 0.00 0.00 0.00 4.41
2945 3070 5.472478 ACATCCTAATACATCATTGCAGCAG 59.528 40.000 0.00 0.00 0.00 4.24
2946 3071 3.817084 TCCTAATACATCATTGCAGCAGC 59.183 43.478 0.00 0.00 42.57 5.25
2947 3072 3.057736 CCTAATACATCATTGCAGCAGCC 60.058 47.826 0.00 0.00 41.13 4.85
2948 3073 0.949397 ATACATCATTGCAGCAGCCG 59.051 50.000 0.00 0.00 41.13 5.52
2949 3074 1.096967 TACATCATTGCAGCAGCCGG 61.097 55.000 0.00 0.00 41.13 6.13
2950 3075 2.831742 ATCATTGCAGCAGCCGGG 60.832 61.111 2.18 0.00 41.13 5.73
2951 3076 3.650298 ATCATTGCAGCAGCCGGGT 62.650 57.895 0.00 0.00 41.13 5.28
2952 3077 3.376078 CATTGCAGCAGCCGGGTT 61.376 61.111 1.64 0.00 41.13 4.11
2953 3078 3.064324 ATTGCAGCAGCCGGGTTC 61.064 61.111 1.64 0.00 41.13 3.62
2961 3086 3.781307 AGCCGGGTTCGCAGCATA 61.781 61.111 0.00 0.00 34.56 3.14
2962 3087 3.272334 GCCGGGTTCGCAGCATAG 61.272 66.667 2.18 0.00 34.56 2.23
2963 3088 2.186903 CCGGGTTCGCAGCATAGT 59.813 61.111 0.00 0.00 34.56 2.12
2964 3089 1.449601 CCGGGTTCGCAGCATAGTT 60.450 57.895 0.00 0.00 34.56 2.24
2965 3090 1.024579 CCGGGTTCGCAGCATAGTTT 61.025 55.000 0.00 0.00 34.56 2.66
2966 3091 1.647346 CGGGTTCGCAGCATAGTTTA 58.353 50.000 0.00 0.00 0.00 2.01
2967 3092 2.004017 CGGGTTCGCAGCATAGTTTAA 58.996 47.619 0.00 0.00 0.00 1.52
2968 3093 2.417239 CGGGTTCGCAGCATAGTTTAAA 59.583 45.455 0.00 0.00 0.00 1.52
2969 3094 3.120130 CGGGTTCGCAGCATAGTTTAAAA 60.120 43.478 0.00 0.00 0.00 1.52
2970 3095 4.614078 CGGGTTCGCAGCATAGTTTAAAAA 60.614 41.667 0.00 0.00 0.00 1.94
3008 3133 2.057503 CGATGAGGCTATCGGTTCAG 57.942 55.000 14.53 0.00 44.56 3.02
3009 3134 1.609072 CGATGAGGCTATCGGTTCAGA 59.391 52.381 14.53 0.00 44.56 3.27
3010 3135 2.351253 CGATGAGGCTATCGGTTCAGAG 60.351 54.545 14.53 0.00 44.56 3.35
3011 3136 2.145397 TGAGGCTATCGGTTCAGAGT 57.855 50.000 0.00 0.00 0.00 3.24
3012 3137 2.457598 TGAGGCTATCGGTTCAGAGTT 58.542 47.619 0.00 0.00 0.00 3.01
3013 3138 2.832129 TGAGGCTATCGGTTCAGAGTTT 59.168 45.455 0.00 0.00 0.00 2.66
3014 3139 3.260884 TGAGGCTATCGGTTCAGAGTTTT 59.739 43.478 0.00 0.00 0.00 2.43
3015 3140 4.464951 TGAGGCTATCGGTTCAGAGTTTTA 59.535 41.667 0.00 0.00 0.00 1.52
3016 3141 4.756502 AGGCTATCGGTTCAGAGTTTTAC 58.243 43.478 0.00 0.00 0.00 2.01
3017 3142 4.466726 AGGCTATCGGTTCAGAGTTTTACT 59.533 41.667 0.00 0.00 0.00 2.24
3018 3143 5.655532 AGGCTATCGGTTCAGAGTTTTACTA 59.344 40.000 0.00 0.00 0.00 1.82
3019 3144 5.978322 GGCTATCGGTTCAGAGTTTTACTAG 59.022 44.000 0.00 0.00 0.00 2.57
3020 3145 6.405619 GGCTATCGGTTCAGAGTTTTACTAGT 60.406 42.308 0.00 0.00 0.00 2.57
3021 3146 6.692249 GCTATCGGTTCAGAGTTTTACTAGTC 59.308 42.308 0.00 0.00 0.00 2.59
3022 3147 5.039480 TCGGTTCAGAGTTTTACTAGTCG 57.961 43.478 0.00 0.00 0.00 4.18
3023 3148 4.083110 TCGGTTCAGAGTTTTACTAGTCGG 60.083 45.833 0.00 0.00 0.00 4.79
3024 3149 4.083110 CGGTTCAGAGTTTTACTAGTCGGA 60.083 45.833 0.00 0.00 0.00 4.55
3025 3150 5.159925 GGTTCAGAGTTTTACTAGTCGGAC 58.840 45.833 0.00 0.00 0.00 4.79
3026 3151 5.159925 GTTCAGAGTTTTACTAGTCGGACC 58.840 45.833 0.00 0.00 0.00 4.46
3027 3152 4.401022 TCAGAGTTTTACTAGTCGGACCA 58.599 43.478 0.00 0.00 0.00 4.02
3028 3153 4.217118 TCAGAGTTTTACTAGTCGGACCAC 59.783 45.833 0.00 0.00 0.00 4.16
3029 3154 4.022589 CAGAGTTTTACTAGTCGGACCACA 60.023 45.833 0.00 0.00 0.00 4.17
3030 3155 4.771054 AGAGTTTTACTAGTCGGACCACAT 59.229 41.667 0.00 0.00 0.00 3.21
3031 3156 4.817517 AGTTTTACTAGTCGGACCACATG 58.182 43.478 0.00 0.00 0.00 3.21
3032 3157 4.282703 AGTTTTACTAGTCGGACCACATGT 59.717 41.667 0.00 0.00 0.00 3.21
3033 3158 3.861276 TTACTAGTCGGACCACATGTG 57.139 47.619 19.31 19.31 0.00 3.21
3034 3159 1.629043 ACTAGTCGGACCACATGTGT 58.371 50.000 23.79 12.31 0.00 3.72
3035 3160 1.968493 ACTAGTCGGACCACATGTGTT 59.032 47.619 23.79 10.81 0.00 3.32
3036 3161 2.029290 ACTAGTCGGACCACATGTGTTC 60.029 50.000 23.79 19.27 0.00 3.18
3037 3162 0.756294 AGTCGGACCACATGTGTTCA 59.244 50.000 22.90 2.68 0.00 3.18
3038 3163 1.347707 AGTCGGACCACATGTGTTCAT 59.652 47.619 22.90 7.22 34.21 2.57
3039 3164 2.151202 GTCGGACCACATGTGTTCATT 58.849 47.619 22.90 3.63 31.15 2.57
3040 3165 2.552315 GTCGGACCACATGTGTTCATTT 59.448 45.455 22.90 1.93 31.15 2.32
3041 3166 2.551887 TCGGACCACATGTGTTCATTTG 59.448 45.455 22.90 10.74 33.16 2.32
3042 3167 2.676076 GGACCACATGTGTTCATTTGC 58.324 47.619 22.90 3.59 32.34 3.68
3043 3168 2.318578 GACCACATGTGTTCATTTGCG 58.681 47.619 23.79 8.10 32.34 4.85
3044 3169 1.952990 ACCACATGTGTTCATTTGCGA 59.047 42.857 23.79 0.00 32.34 5.10
3045 3170 2.287547 ACCACATGTGTTCATTTGCGAC 60.288 45.455 23.79 0.00 32.34 5.19
3046 3171 2.287487 CCACATGTGTTCATTTGCGACA 60.287 45.455 23.79 0.00 32.34 4.35
3047 3172 3.370276 CACATGTGTTCATTTGCGACAA 58.630 40.909 18.03 0.00 31.15 3.18
3048 3173 3.795639 CACATGTGTTCATTTGCGACAAA 59.204 39.130 18.03 7.32 31.15 2.83
3049 3174 4.267214 CACATGTGTTCATTTGCGACAAAA 59.733 37.500 18.03 0.00 31.15 2.44
3050 3175 4.867047 ACATGTGTTCATTTGCGACAAAAA 59.133 33.333 0.00 0.00 31.15 1.94
3090 3215 9.410556 AGGTAATTTCTCAAATTTTTGACATCG 57.589 29.630 1.66 0.00 41.88 3.84
3091 3216 9.191995 GGTAATTTCTCAAATTTTTGACATCGT 57.808 29.630 1.66 0.00 41.88 3.73
3158 3283 9.911788 AAATCACAGTGTTATTGATCTATTCCT 57.088 29.630 3.48 0.00 0.00 3.36
3159 3284 8.899427 ATCACAGTGTTATTGATCTATTCCTG 57.101 34.615 0.00 0.50 0.00 3.86
3160 3285 6.763135 TCACAGTGTTATTGATCTATTCCTGC 59.237 38.462 0.00 0.00 0.00 4.85
3161 3286 5.755375 ACAGTGTTATTGATCTATTCCTGCG 59.245 40.000 0.00 0.00 0.00 5.18
3162 3287 5.985530 CAGTGTTATTGATCTATTCCTGCGA 59.014 40.000 0.00 0.00 0.00 5.10
3163 3288 6.648310 CAGTGTTATTGATCTATTCCTGCGAT 59.352 38.462 0.00 0.00 0.00 4.58
3164 3289 6.870965 AGTGTTATTGATCTATTCCTGCGATC 59.129 38.462 0.00 0.00 35.33 3.69
3165 3290 6.091441 GTGTTATTGATCTATTCCTGCGATCC 59.909 42.308 0.00 0.00 34.17 3.36
3166 3291 6.014242 TGTTATTGATCTATTCCTGCGATCCT 60.014 38.462 0.00 0.00 34.17 3.24
3167 3292 7.178451 TGTTATTGATCTATTCCTGCGATCCTA 59.822 37.037 0.00 0.00 34.17 2.94
3168 3293 6.611613 ATTGATCTATTCCTGCGATCCTAA 57.388 37.500 0.00 0.00 34.17 2.69
3169 3294 6.419484 TTGATCTATTCCTGCGATCCTAAA 57.581 37.500 0.00 0.00 34.17 1.85
3170 3295 6.611613 TGATCTATTCCTGCGATCCTAAAT 57.388 37.500 0.00 0.00 34.17 1.40
3171 3296 7.718334 TGATCTATTCCTGCGATCCTAAATA 57.282 36.000 0.00 0.00 34.17 1.40
3172 3297 8.311395 TGATCTATTCCTGCGATCCTAAATAT 57.689 34.615 0.00 0.00 34.17 1.28
3173 3298 8.762645 TGATCTATTCCTGCGATCCTAAATATT 58.237 33.333 0.00 0.00 34.17 1.28
3174 3299 9.606631 GATCTATTCCTGCGATCCTAAATATTT 57.393 33.333 5.89 5.89 0.00 1.40
3175 3300 9.965902 ATCTATTCCTGCGATCCTAAATATTTT 57.034 29.630 5.91 0.00 0.00 1.82
3176 3301 9.793259 TCTATTCCTGCGATCCTAAATATTTTT 57.207 29.630 5.91 0.00 0.00 1.94
3178 3303 8.697507 ATTCCTGCGATCCTAAATATTTTTCT 57.302 30.769 5.91 0.00 0.00 2.52
3179 3304 8.519799 TTCCTGCGATCCTAAATATTTTTCTT 57.480 30.769 5.91 0.00 0.00 2.52
3180 3305 8.519799 TCCTGCGATCCTAAATATTTTTCTTT 57.480 30.769 5.91 0.00 0.00 2.52
3181 3306 9.621629 TCCTGCGATCCTAAATATTTTTCTTTA 57.378 29.630 5.91 0.00 0.00 1.85
3208 3333 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3209 3334 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
3210 3335 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
3211 3336 8.367911 AGATTTCAACAAGTGACTACATACAGA 58.632 33.333 0.00 0.00 35.39 3.41
3212 3337 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
3213 3338 6.650427 TCAACAAGTGACTACATACAGAGT 57.350 37.500 0.00 0.00 0.00 3.24
3214 3339 7.754851 TCAACAAGTGACTACATACAGAGTA 57.245 36.000 0.00 0.00 0.00 2.59
3215 3340 8.173542 TCAACAAGTGACTACATACAGAGTAA 57.826 34.615 0.00 0.00 0.00 2.24
3216 3341 8.635328 TCAACAAGTGACTACATACAGAGTAAA 58.365 33.333 0.00 0.00 0.00 2.01
3217 3342 9.256477 CAACAAGTGACTACATACAGAGTAAAA 57.744 33.333 0.00 0.00 0.00 1.52
3218 3343 9.998106 AACAAGTGACTACATACAGAGTAAAAT 57.002 29.630 0.00 0.00 0.00 1.82
3219 3344 9.424319 ACAAGTGACTACATACAGAGTAAAATG 57.576 33.333 0.00 0.00 0.00 2.32
3220 3345 9.639601 CAAGTGACTACATACAGAGTAAAATGA 57.360 33.333 0.00 0.00 0.00 2.57
3221 3346 9.862371 AAGTGACTACATACAGAGTAAAATGAG 57.138 33.333 0.00 0.00 0.00 2.90
3222 3347 9.026121 AGTGACTACATACAGAGTAAAATGAGT 57.974 33.333 0.00 0.00 0.00 3.41
3223 3348 9.077674 GTGACTACATACAGAGTAAAATGAGTG 57.922 37.037 0.00 0.00 0.00 3.51
3224 3349 9.020731 TGACTACATACAGAGTAAAATGAGTGA 57.979 33.333 0.00 0.00 0.00 3.41
3225 3350 9.856488 GACTACATACAGAGTAAAATGAGTGAA 57.144 33.333 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.476599 TCCAACACAATCCTATTTGGTCAAG 59.523 40.000 0.00 0.00 38.32 3.02
2 3 5.389520 TCCAACACAATCCTATTTGGTCAA 58.610 37.500 0.00 0.00 38.32 3.18
95 96 2.719705 ACACATTTTGGGTAGGGAAGGA 59.280 45.455 0.00 0.00 28.13 3.36
211 213 1.693627 ACACGTAAACCATTTGGCCA 58.306 45.000 0.00 0.00 39.32 5.36
315 329 8.994170 GCATCAACTAGGTAGAATTTTCCTATC 58.006 37.037 0.00 0.00 34.01 2.08
316 330 8.718656 AGCATCAACTAGGTAGAATTTTCCTAT 58.281 33.333 0.00 0.00 34.01 2.57
571 588 6.324512 ACCCAATTATGAATAATGCAGCAAGA 59.675 34.615 0.00 0.00 33.51 3.02
803 820 7.391148 AATGTCAAGGGATATTACAACACAC 57.609 36.000 0.00 0.00 33.65 3.82
852 869 8.939929 AGTCACATCAACTACAATATTGTTCAG 58.060 33.333 25.31 19.16 42.35 3.02
1041 1058 4.848660 AGCATATAGGTGGACATTGAGGAT 59.151 41.667 0.00 0.00 0.00 3.24
1076 1093 1.977594 GCCATTAGCCACGACGTTGG 61.978 60.000 7.90 9.31 39.98 3.77
1080 1097 0.179121 TAGTGCCATTAGCCACGACG 60.179 55.000 0.00 0.00 42.71 5.12
1083 1100 1.933853 GTCTTAGTGCCATTAGCCACG 59.066 52.381 0.00 0.00 42.71 4.94
1111 1128 1.804151 GTGATGCACCGTCTTAAAGCA 59.196 47.619 0.00 0.00 39.79 3.91
1171 1188 1.067295 ATCTGCCCTCCAGTCAAACA 58.933 50.000 0.00 0.00 42.38 2.83
1291 1308 5.925397 CAGTATAGTGCTCATGATCAAGTCC 59.075 44.000 0.00 0.00 0.00 3.85
1483 1500 8.843262 TGGATTCTAGCAATTCAAACTCATATG 58.157 33.333 0.00 0.00 0.00 1.78
1497 1514 9.851686 AAGTCATATACAAATGGATTCTAGCAA 57.148 29.630 0.00 0.00 0.00 3.91
1512 1529 9.929180 GATTCCAGCAACTATAAGTCATATACA 57.071 33.333 0.00 0.00 0.00 2.29
1513 1530 9.929180 TGATTCCAGCAACTATAAGTCATATAC 57.071 33.333 0.00 0.00 0.00 1.47
1516 1533 9.851686 AATTGATTCCAGCAACTATAAGTCATA 57.148 29.630 0.00 0.00 0.00 2.15
1517 1534 8.757982 AATTGATTCCAGCAACTATAAGTCAT 57.242 30.769 0.00 0.00 0.00 3.06
1518 1535 8.461222 CAAATTGATTCCAGCAACTATAAGTCA 58.539 33.333 0.00 0.00 0.00 3.41
1519 1536 8.462016 ACAAATTGATTCCAGCAACTATAAGTC 58.538 33.333 0.00 0.00 0.00 3.01
1520 1537 8.353423 ACAAATTGATTCCAGCAACTATAAGT 57.647 30.769 0.00 0.00 0.00 2.24
1582 1599 9.424319 CCAGCAACTATAACTCATATACGAATT 57.576 33.333 0.00 0.00 0.00 2.17
1583 1600 8.803235 TCCAGCAACTATAACTCATATACGAAT 58.197 33.333 0.00 0.00 0.00 3.34
1584 1601 8.173542 TCCAGCAACTATAACTCATATACGAA 57.826 34.615 0.00 0.00 0.00 3.85
1585 1602 7.754851 TCCAGCAACTATAACTCATATACGA 57.245 36.000 0.00 0.00 0.00 3.43
1586 1603 8.988064 ATTCCAGCAACTATAACTCATATACG 57.012 34.615 0.00 0.00 0.00 3.06
1587 1604 9.929180 TGATTCCAGCAACTATAACTCATATAC 57.071 33.333 0.00 0.00 0.00 1.47
1590 1607 9.851686 AATTGATTCCAGCAACTATAACTCATA 57.148 29.630 0.00 0.00 0.00 2.15
1591 1608 8.757982 AATTGATTCCAGCAACTATAACTCAT 57.242 30.769 0.00 0.00 0.00 2.90
1592 1609 8.579850 AAATTGATTCCAGCAACTATAACTCA 57.420 30.769 0.00 0.00 0.00 3.41
1749 1766 0.036732 TCTCCCTTGTGTGTCCATGC 59.963 55.000 0.00 0.00 0.00 4.06
1753 1770 2.154462 CAACATCTCCCTTGTGTGTCC 58.846 52.381 0.00 0.00 0.00 4.02
1771 1788 6.843752 TCTATGGGTTTGTTTAGGAACTCAA 58.156 36.000 0.00 0.00 39.48 3.02
1802 1819 0.037882 ATATCGCGGCCATCTCAGTG 60.038 55.000 6.13 0.00 0.00 3.66
1814 1831 4.339429 CCAAACTGTTACCAAATATCGCG 58.661 43.478 0.00 0.00 0.00 5.87
1816 1833 5.560966 AGCCAAACTGTTACCAAATATCG 57.439 39.130 0.00 0.00 0.00 2.92
1853 1870 7.327975 TCGCTAGAAGTTCATTTGATCCTTTA 58.672 34.615 5.50 0.00 0.00 1.85
1870 1887 3.353557 TCTAGAGCACCTTTCGCTAGAA 58.646 45.455 0.00 0.00 39.08 2.10
1878 1895 7.114754 TCATCATCAATTTCTAGAGCACCTTT 58.885 34.615 0.00 0.00 0.00 3.11
2022 2039 5.361571 TGAATGTTGCCATCAGCTTATCATT 59.638 36.000 0.00 0.00 44.23 2.57
2052 2069 5.065914 AGCATTAGCAATCGTATCACCAAT 58.934 37.500 0.00 0.00 45.49 3.16
2062 2079 5.596268 TGCAACTATAGCATTAGCAATCG 57.404 39.130 0.00 0.00 45.49 3.34
2128 2145 4.524328 GGAAACCAGGAATGTCTTTGATGT 59.476 41.667 0.00 0.00 0.00 3.06
2222 2239 3.609853 TCAGCTTGTTGTCAAAGTCAGT 58.390 40.909 0.00 0.00 32.87 3.41
2354 2475 0.764890 AGCACACAAGCCTGTTAGGA 59.235 50.000 0.00 0.00 37.67 2.94
2645 2767 5.984926 AGTTGAGTTGCAAAATAACCACATG 59.015 36.000 0.00 0.00 38.44 3.21
2646 2768 5.984926 CAGTTGAGTTGCAAAATAACCACAT 59.015 36.000 0.00 0.00 38.44 3.21
2651 2775 8.293867 TGTATACCAGTTGAGTTGCAAAATAAC 58.706 33.333 0.00 6.77 38.44 1.89
2681 2805 2.557924 ACCACCATACAGTGCAACAATG 59.442 45.455 0.00 0.00 41.43 2.82
2920 3045 6.532826 TGCTGCAATGATGTATTAGGATGTA 58.467 36.000 0.00 0.00 0.00 2.29
2931 3056 2.412323 CCGGCTGCTGCAATGATGT 61.412 57.895 17.89 0.00 41.91 3.06
2932 3057 2.411701 CCGGCTGCTGCAATGATG 59.588 61.111 17.89 0.00 41.91 3.07
2933 3058 2.831742 CCCGGCTGCTGCAATGAT 60.832 61.111 17.89 0.00 41.91 2.45
2934 3059 3.866379 AACCCGGCTGCTGCAATGA 62.866 57.895 17.89 0.00 41.91 2.57
2935 3060 3.346631 GAACCCGGCTGCTGCAATG 62.347 63.158 17.89 6.89 41.91 2.82
2936 3061 3.064324 GAACCCGGCTGCTGCAAT 61.064 61.111 17.89 0.00 41.91 3.56
2944 3069 3.740128 CTATGCTGCGAACCCGGCT 62.740 63.158 0.00 0.00 36.06 5.52
2945 3070 3.272334 CTATGCTGCGAACCCGGC 61.272 66.667 0.00 0.00 36.06 6.13
2946 3071 1.024579 AAACTATGCTGCGAACCCGG 61.025 55.000 0.00 0.00 36.06 5.73
2947 3072 1.647346 TAAACTATGCTGCGAACCCG 58.353 50.000 0.00 0.00 39.16 5.28
2948 3073 4.428615 TTTTAAACTATGCTGCGAACCC 57.571 40.909 0.00 0.00 0.00 4.11
2989 3114 1.609072 TCTGAACCGATAGCCTCATCG 59.391 52.381 6.09 6.09 45.81 3.84
2990 3115 2.625790 ACTCTGAACCGATAGCCTCATC 59.374 50.000 0.00 0.00 0.00 2.92
2991 3116 2.672098 ACTCTGAACCGATAGCCTCAT 58.328 47.619 0.00 0.00 0.00 2.90
2992 3117 2.145397 ACTCTGAACCGATAGCCTCA 57.855 50.000 0.00 0.00 0.00 3.86
2993 3118 3.528597 AAACTCTGAACCGATAGCCTC 57.471 47.619 0.00 0.00 0.00 4.70
2994 3119 3.983044 AAAACTCTGAACCGATAGCCT 57.017 42.857 0.00 0.00 0.00 4.58
2995 3120 4.756502 AGTAAAACTCTGAACCGATAGCC 58.243 43.478 0.00 0.00 0.00 3.93
2996 3121 6.562518 ACTAGTAAAACTCTGAACCGATAGC 58.437 40.000 0.00 0.00 0.00 2.97
2997 3122 6.906143 CGACTAGTAAAACTCTGAACCGATAG 59.094 42.308 0.00 0.00 0.00 2.08
2998 3123 6.183360 CCGACTAGTAAAACTCTGAACCGATA 60.183 42.308 0.00 0.00 0.00 2.92
2999 3124 5.392811 CCGACTAGTAAAACTCTGAACCGAT 60.393 44.000 0.00 0.00 0.00 4.18
3000 3125 4.083110 CCGACTAGTAAAACTCTGAACCGA 60.083 45.833 0.00 0.00 0.00 4.69
3001 3126 4.083110 TCCGACTAGTAAAACTCTGAACCG 60.083 45.833 0.00 0.00 0.00 4.44
3002 3127 5.159925 GTCCGACTAGTAAAACTCTGAACC 58.840 45.833 0.00 0.00 0.00 3.62
3003 3128 5.159925 GGTCCGACTAGTAAAACTCTGAAC 58.840 45.833 0.00 0.00 0.00 3.18
3004 3129 4.828939 TGGTCCGACTAGTAAAACTCTGAA 59.171 41.667 0.00 0.00 0.00 3.02
3005 3130 4.217118 GTGGTCCGACTAGTAAAACTCTGA 59.783 45.833 0.00 0.00 0.00 3.27
3006 3131 4.022589 TGTGGTCCGACTAGTAAAACTCTG 60.023 45.833 0.00 0.00 0.00 3.35
3007 3132 4.147321 TGTGGTCCGACTAGTAAAACTCT 58.853 43.478 0.00 0.00 0.00 3.24
3008 3133 4.510038 TGTGGTCCGACTAGTAAAACTC 57.490 45.455 0.00 0.00 0.00 3.01
3009 3134 4.282703 ACATGTGGTCCGACTAGTAAAACT 59.717 41.667 0.00 0.00 0.00 2.66
3010 3135 4.387862 CACATGTGGTCCGACTAGTAAAAC 59.612 45.833 18.51 0.00 0.00 2.43
3011 3136 4.039488 ACACATGTGGTCCGACTAGTAAAA 59.961 41.667 28.64 0.00 34.19 1.52
3012 3137 3.575256 ACACATGTGGTCCGACTAGTAAA 59.425 43.478 28.64 0.00 34.19 2.01
3013 3138 3.159472 ACACATGTGGTCCGACTAGTAA 58.841 45.455 28.64 0.00 34.19 2.24
3014 3139 2.799017 ACACATGTGGTCCGACTAGTA 58.201 47.619 28.64 0.00 34.19 1.82
3015 3140 1.629043 ACACATGTGGTCCGACTAGT 58.371 50.000 28.64 0.00 34.19 2.57
3016 3141 2.029380 TGAACACATGTGGTCCGACTAG 60.029 50.000 34.93 6.21 46.35 2.57
3017 3142 1.964933 TGAACACATGTGGTCCGACTA 59.035 47.619 34.93 17.67 46.35 2.59
3018 3143 0.756294 TGAACACATGTGGTCCGACT 59.244 50.000 34.93 9.14 46.35 4.18
3019 3144 1.808411 ATGAACACATGTGGTCCGAC 58.192 50.000 34.93 16.25 46.35 4.79
3020 3145 2.551887 CAAATGAACACATGTGGTCCGA 59.448 45.455 34.93 21.57 46.35 4.55
3021 3146 2.921912 GCAAATGAACACATGTGGTCCG 60.922 50.000 34.93 23.01 46.35 4.79
3022 3147 2.676076 GCAAATGAACACATGTGGTCC 58.324 47.619 34.93 19.05 46.35 4.46
3024 3149 1.952990 TCGCAAATGAACACATGTGGT 59.047 42.857 28.64 24.25 31.86 4.16
3025 3150 2.287487 TGTCGCAAATGAACACATGTGG 60.287 45.455 28.64 10.84 31.86 4.17
3026 3151 2.997463 TGTCGCAAATGAACACATGTG 58.003 42.857 24.25 24.25 33.70 3.21
3027 3152 3.706802 TTGTCGCAAATGAACACATGT 57.293 38.095 0.00 0.00 0.00 3.21
3028 3153 5.386810 TTTTTGTCGCAAATGAACACATG 57.613 34.783 5.97 0.00 0.00 3.21
3064 3189 9.410556 CGATGTCAAAAATTTGAGAAATTACCT 57.589 29.630 8.76 0.00 46.80 3.08
3065 3190 9.191995 ACGATGTCAAAAATTTGAGAAATTACC 57.808 29.630 8.76 0.00 46.80 2.85
3132 3257 9.911788 AGGAATAGATCAATAACACTGTGATTT 57.088 29.630 15.86 1.65 32.18 2.17
3133 3258 9.334947 CAGGAATAGATCAATAACACTGTGATT 57.665 33.333 15.86 7.71 32.18 2.57
3134 3259 7.443575 GCAGGAATAGATCAATAACACTGTGAT 59.556 37.037 15.86 5.14 34.71 3.06
3135 3260 6.763135 GCAGGAATAGATCAATAACACTGTGA 59.237 38.462 15.86 0.00 0.00 3.58
3136 3261 6.292542 CGCAGGAATAGATCAATAACACTGTG 60.293 42.308 6.19 6.19 0.00 3.66
3137 3262 5.755375 CGCAGGAATAGATCAATAACACTGT 59.245 40.000 0.00 0.00 0.00 3.55
3138 3263 5.985530 TCGCAGGAATAGATCAATAACACTG 59.014 40.000 0.00 0.00 0.00 3.66
3139 3264 6.161855 TCGCAGGAATAGATCAATAACACT 57.838 37.500 0.00 0.00 0.00 3.55
3140 3265 6.091441 GGATCGCAGGAATAGATCAATAACAC 59.909 42.308 0.00 0.00 41.71 3.32
3141 3266 6.014242 AGGATCGCAGGAATAGATCAATAACA 60.014 38.462 0.00 0.00 41.71 2.41
3142 3267 6.402222 AGGATCGCAGGAATAGATCAATAAC 58.598 40.000 0.00 0.00 41.71 1.89
3143 3268 6.611613 AGGATCGCAGGAATAGATCAATAA 57.388 37.500 0.00 0.00 41.71 1.40
3144 3269 7.718334 TTAGGATCGCAGGAATAGATCAATA 57.282 36.000 0.00 0.00 41.71 1.90
3145 3270 6.611613 TTAGGATCGCAGGAATAGATCAAT 57.388 37.500 0.00 0.00 41.71 2.57
3146 3271 6.419484 TTTAGGATCGCAGGAATAGATCAA 57.581 37.500 0.00 0.00 41.71 2.57
3147 3272 6.611613 ATTTAGGATCGCAGGAATAGATCA 57.388 37.500 0.00 0.00 41.71 2.92
3148 3273 9.606631 AAATATTTAGGATCGCAGGAATAGATC 57.393 33.333 0.00 0.00 39.84 2.75
3149 3274 9.965902 AAAATATTTAGGATCGCAGGAATAGAT 57.034 29.630 0.01 0.00 0.00 1.98
3150 3275 9.793259 AAAAATATTTAGGATCGCAGGAATAGA 57.207 29.630 0.01 0.00 0.00 1.98
3152 3277 9.793259 AGAAAAATATTTAGGATCGCAGGAATA 57.207 29.630 0.01 0.00 0.00 1.75
3153 3278 8.697507 AGAAAAATATTTAGGATCGCAGGAAT 57.302 30.769 0.01 0.00 0.00 3.01
3154 3279 8.519799 AAGAAAAATATTTAGGATCGCAGGAA 57.480 30.769 0.01 0.00 0.00 3.36
3155 3280 8.519799 AAAGAAAAATATTTAGGATCGCAGGA 57.480 30.769 0.01 0.00 0.00 3.86
3182 3307 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3183 3308 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
3184 3309 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
3185 3310 8.367911 TCTGTATGTAGTCACTTGTTGAAATCT 58.632 33.333 0.00 0.00 35.39 2.40
3186 3311 8.534333 TCTGTATGTAGTCACTTGTTGAAATC 57.466 34.615 0.00 0.00 35.39 2.17
3187 3312 8.150945 ACTCTGTATGTAGTCACTTGTTGAAAT 58.849 33.333 0.00 0.00 35.39 2.17
3188 3313 7.497595 ACTCTGTATGTAGTCACTTGTTGAAA 58.502 34.615 0.00 0.00 35.39 2.69
3189 3314 7.050970 ACTCTGTATGTAGTCACTTGTTGAA 57.949 36.000 0.00 0.00 35.39 2.69
3190 3315 6.650427 ACTCTGTATGTAGTCACTTGTTGA 57.350 37.500 0.00 0.00 0.00 3.18
3191 3316 8.812147 TTTACTCTGTATGTAGTCACTTGTTG 57.188 34.615 0.00 0.00 0.00 3.33
3192 3317 9.998106 ATTTTACTCTGTATGTAGTCACTTGTT 57.002 29.630 0.00 0.00 0.00 2.83
3193 3318 9.424319 CATTTTACTCTGTATGTAGTCACTTGT 57.576 33.333 0.00 0.00 0.00 3.16
3194 3319 9.639601 TCATTTTACTCTGTATGTAGTCACTTG 57.360 33.333 0.00 0.00 0.00 3.16
3195 3320 9.862371 CTCATTTTACTCTGTATGTAGTCACTT 57.138 33.333 0.00 0.00 0.00 3.16
3196 3321 9.026121 ACTCATTTTACTCTGTATGTAGTCACT 57.974 33.333 0.00 0.00 0.00 3.41
3197 3322 9.077674 CACTCATTTTACTCTGTATGTAGTCAC 57.922 37.037 0.00 0.00 0.00 3.67
3198 3323 9.020731 TCACTCATTTTACTCTGTATGTAGTCA 57.979 33.333 0.00 0.00 0.00 3.41
3199 3324 9.856488 TTCACTCATTTTACTCTGTATGTAGTC 57.144 33.333 0.00 0.00 0.00 2.59
3207 3332 9.561069 AGTGTAAATTCACTCATTTTACTCTGT 57.439 29.630 7.96 0.00 44.07 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.