Multiple sequence alignment - TraesCS3A01G195600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G195600 chr3A 100.000 6649 0 0 1 6649 288534909 288541557 0.000000e+00 12279.0
1 TraesCS3A01G195600 chr3A 100.000 1643 0 0 6974 8616 288541882 288543524 0.000000e+00 3035.0
2 TraesCS3A01G195600 chr3A 100.000 74 0 0 5682 5755 288540515 288540588 4.190000e-28 137.0
3 TraesCS3A01G195600 chr3A 100.000 74 0 0 5607 5680 288540590 288540663 4.190000e-28 137.0
4 TraesCS3A01G195600 chr3D 97.708 1876 31 6 2675 4539 261737707 261739581 0.000000e+00 3216.0
5 TraesCS3A01G195600 chr3D 97.790 1765 24 5 918 2676 261735919 261737674 0.000000e+00 3029.0
6 TraesCS3A01G195600 chr3D 94.859 1556 44 9 7055 8608 261743899 261745420 0.000000e+00 2398.0
7 TraesCS3A01G195600 chr3D 97.143 1155 24 6 4532 5680 261741455 261742606 0.000000e+00 1941.0
8 TraesCS3A01G195600 chr3D 97.297 888 23 1 5682 6568 261742533 261743420 0.000000e+00 1506.0
9 TraesCS3A01G195600 chr3D 89.160 738 61 10 2 736 261735206 261735927 0.000000e+00 902.0
10 TraesCS3A01G195600 chr3B 97.618 1763 29 4 918 2676 319823731 319825484 0.000000e+00 3011.0
11 TraesCS3A01G195600 chr3B 97.480 1389 19 3 2675 4061 319825517 319826891 0.000000e+00 2357.0
12 TraesCS3A01G195600 chr3B 96.996 1165 27 6 4521 5680 319827451 319828612 0.000000e+00 1951.0
13 TraesCS3A01G195600 chr3B 95.094 1060 23 9 7264 8317 319829865 319830901 0.000000e+00 1642.0
14 TraesCS3A01G195600 chr3B 96.963 889 25 2 5682 6568 319828539 319829427 0.000000e+00 1491.0
15 TraesCS3A01G195600 chr3B 95.750 400 16 1 4123 4522 319826892 319827290 2.030000e-180 643.0
16 TraesCS3A01G195600 chr3B 85.309 599 65 14 147 726 319821911 319822505 1.600000e-166 597.0
17 TraesCS3A01G195600 chr3B 94.983 299 13 2 8314 8610 319830998 319831296 1.310000e-127 468.0
18 TraesCS3A01G195600 chr3B 91.798 317 9 6 6974 7274 319829593 319829908 7.990000e-115 425.0
19 TraesCS3A01G195600 chr4A 95.652 184 8 0 734 917 100636359 100636542 6.540000e-76 296.0
20 TraesCS3A01G195600 chr4A 91.379 174 12 3 1 173 189578803 189578632 1.450000e-57 235.0
21 TraesCS3A01G195600 chr5A 95.652 184 7 1 734 917 101083456 101083274 2.350000e-75 294.0
22 TraesCS3A01G195600 chr5A 95.628 183 6 1 737 917 29678332 29678150 8.460000e-75 292.0
23 TraesCS3A01G195600 chr5A 93.846 195 10 2 734 927 71460202 71460395 8.460000e-75 292.0
24 TraesCS3A01G195600 chr5A 75.652 230 42 12 268 487 534623065 534622840 1.530000e-17 102.0
25 TraesCS3A01G195600 chr5A 100.000 28 0 0 166 193 548602853 548602880 1.600000e-02 52.8
26 TraesCS3A01G195600 chr6D 94.624 186 8 2 734 917 445581627 445581442 3.940000e-73 287.0
27 TraesCS3A01G195600 chr6D 90.230 174 14 3 1 173 212952266 212952437 3.130000e-54 224.0
28 TraesCS3A01G195600 chr7A 94.624 186 7 3 734 917 701211929 701212113 1.420000e-72 285.0
29 TraesCS3A01G195600 chr7A 73.799 229 55 4 263 486 440359015 440358787 1.540000e-12 86.1
30 TraesCS3A01G195600 chr4D 92.308 195 15 0 734 928 35722300 35722494 2.370000e-70 278.0
31 TraesCS3A01G195600 chr4D 90.751 173 11 5 1 171 224475650 224475481 8.700000e-55 226.0
32 TraesCS3A01G195600 chr2D 91.919 198 15 1 729 926 537187724 537187920 8.520000e-70 276.0
33 TraesCS3A01G195600 chr2D 74.510 255 56 8 240 487 448224942 448224690 1.530000e-17 102.0
34 TraesCS3A01G195600 chr5D 91.457 199 17 0 729 927 217756887 217757085 3.060000e-69 274.0
35 TraesCS3A01G195600 chr5D 73.563 261 61 7 234 487 558726578 558726837 9.210000e-15 93.5
36 TraesCS3A01G195600 chr7D 90.805 174 13 3 1 173 316415389 316415560 6.730000e-56 230.0
37 TraesCS3A01G195600 chr7D 90.341 176 14 3 1 175 323892744 323892917 2.420000e-55 228.0
38 TraesCS3A01G195600 chr7D 74.803 254 56 7 241 487 389466619 389466367 3.290000e-19 108.0
39 TraesCS3A01G195600 chr6A 90.805 174 13 3 1 173 187893928 187893757 6.730000e-56 230.0
40 TraesCS3A01G195600 chr1D 90.805 174 13 3 1 173 164920515 164920344 6.730000e-56 230.0
41 TraesCS3A01G195600 chr1D 90.698 172 13 3 1 171 182885689 182885858 8.700000e-55 226.0
42 TraesCS3A01G195600 chr1D 88.710 62 7 0 4234 4295 433953316 433953255 9.270000e-10 76.8
43 TraesCS3A01G195600 chr1B 75.403 248 54 6 240 481 24772424 24772178 7.070000e-21 113.0
44 TraesCS3A01G195600 chr2B 85.333 75 7 4 8164 8236 156918880 156918952 3.340000e-09 75.0
45 TraesCS3A01G195600 chr6B 81.818 88 13 3 401 487 52231673 52231588 4.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G195600 chr3A 288534909 288543524 8615 False 3897.000000 12279 100.000000 1 8616 4 chr3A.!!$F1 8615
1 TraesCS3A01G195600 chr3D 261735206 261745420 10214 False 2165.333333 3216 95.659500 2 8608 6 chr3D.!!$F1 8606
2 TraesCS3A01G195600 chr3B 319821911 319831296 9385 False 1398.333333 3011 94.665667 147 8610 9 chr3B.!!$F1 8463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 1.058404 GTCCTTGCACGTTCGTAGTC 58.942 55.000 0.0 0.0 0.00 2.59 F
1491 2755 0.179045 AGTGAGCTTTGGTTCGCTGT 60.179 50.000 0.0 0.0 40.91 4.40 F
1492 2756 0.663153 GTGAGCTTTGGTTCGCTGTT 59.337 50.000 0.0 0.0 36.45 3.16 F
1494 2758 1.065401 TGAGCTTTGGTTCGCTGTTTG 59.935 47.619 0.0 0.0 36.45 2.93 F
1495 2759 1.333619 GAGCTTTGGTTCGCTGTTTGA 59.666 47.619 0.0 0.0 36.45 2.69 F
2584 3849 1.430075 GGGTGGGGAGGGAAAAAGTTA 59.570 52.381 0.0 0.0 0.00 2.24 F
3880 5192 0.466555 TAACCACCAACCAGCCACAC 60.467 55.000 0.0 0.0 0.00 3.82 F
5369 8567 0.470833 CCCACCACCCATGAAAACCA 60.471 55.000 0.0 0.0 0.00 3.67 F
6602 9868 0.034186 TGGCTTTGGATTCGGCATCT 60.034 50.000 0.0 0.0 31.67 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 2803 0.263172 ACCGACCTCAGATGGGAGAT 59.737 55.000 0.00 0.00 37.05 2.75 R
2670 3935 1.004277 GATGGTTAGGTGAAGTGGGCA 59.996 52.381 0.00 0.00 0.00 5.36 R
2672 3937 1.553248 TCGATGGTTAGGTGAAGTGGG 59.447 52.381 0.00 0.00 0.00 4.61 R
3141 4444 2.203394 CCCGGCTAGCAATGGCAT 60.203 61.111 18.24 0.00 44.61 4.40 R
3313 4616 9.439500 TCACGCTAAATGTTTTACCTTAACTAT 57.561 29.630 0.00 0.00 0.00 2.12 R
4425 5737 2.378038 GCAGTTGGGGCATTCAGATTA 58.622 47.619 0.00 0.00 0.00 1.75 R
5693 8891 0.036010 ACAGCATTCCTAGCGTTGCT 60.036 50.000 5.89 5.89 45.86 3.91 R
7141 10432 0.469144 AACGGGGCTTGAACACCAAT 60.469 50.000 0.00 0.00 33.68 3.16 R
8555 11951 0.625849 TCCAATCTCAAAGGGAGCCC 59.374 55.000 0.00 0.00 43.70 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.058404 GTCCTTGCACGTTCGTAGTC 58.942 55.000 0.00 0.00 0.00 2.59
82 83 1.342082 CCTTGCACGTTCGTAGTCGG 61.342 60.000 0.00 0.00 37.69 4.79
99 100 3.127203 AGTCGGATCGTCAAAGTCTACTG 59.873 47.826 0.00 0.00 0.00 2.74
124 125 3.065371 CCAAAAACGATAGCCACCATCTC 59.935 47.826 0.00 0.00 42.67 2.75
127 128 3.845781 AACGATAGCCACCATCTCATT 57.154 42.857 0.00 0.00 42.67 2.57
128 129 3.117491 ACGATAGCCACCATCTCATTG 57.883 47.619 0.00 0.00 42.67 2.82
132 133 4.212847 CGATAGCCACCATCTCATTGAAAG 59.787 45.833 0.00 0.00 0.00 2.62
134 135 4.246712 AGCCACCATCTCATTGAAAGAT 57.753 40.909 0.00 0.00 33.74 2.40
160 162 7.037586 TGGGACACTTTTCCTCTATTAGAATGT 60.038 37.037 0.00 0.00 35.76 2.71
161 163 7.829706 GGGACACTTTTCCTCTATTAGAATGTT 59.170 37.037 0.00 0.00 35.76 2.71
185 187 8.787852 GTTTATCAGATTTCTATGGGGATTCAC 58.212 37.037 0.00 0.00 0.00 3.18
253 255 4.367039 TGAAGAAAGGGGGTTGAAGTAG 57.633 45.455 0.00 0.00 0.00 2.57
291 293 9.880064 TTTTTGTCAAATTAAATGTGATGCATG 57.120 25.926 2.46 0.00 37.96 4.06
307 309 4.295857 TGCATGTTTTGATCATGATCCG 57.704 40.909 28.61 11.93 43.47 4.18
312 314 6.497437 CATGTTTTGATCATGATCCGCTTAA 58.503 36.000 28.61 15.45 43.47 1.85
320 322 1.448985 TGATCCGCTTAAGGCACAAC 58.551 50.000 4.29 0.00 41.91 3.32
336 338 2.448582 AACTGGGGCGGTCTTGTGA 61.449 57.895 0.00 0.00 0.00 3.58
364 366 7.601886 ACGATAAATGCAAATTCATTGTTTGGA 59.398 29.630 0.00 0.00 41.32 3.53
365 367 7.899330 CGATAAATGCAAATTCATTGTTTGGAC 59.101 33.333 0.00 0.00 39.22 4.02
382 384 4.561500 TGGACATGGAAAGATTAACCGA 57.438 40.909 0.00 0.00 0.00 4.69
417 421 5.385198 TCTTATGGTTGAAGTTTGGCTCTT 58.615 37.500 0.00 0.00 0.00 2.85
434 438 4.333095 GGCTCTTAGATTCGGTTTTTCTCC 59.667 45.833 0.00 0.00 0.00 3.71
443 447 3.742385 TCGGTTTTTCTCCGGTACAAAT 58.258 40.909 0.00 0.00 46.82 2.32
445 449 3.365565 CGGTTTTTCTCCGGTACAAATGG 60.366 47.826 0.00 0.00 43.68 3.16
517 521 9.483916 TTGATAGTAAAGAATTGAGAACGTTCA 57.516 29.630 28.78 8.56 0.00 3.18
527 531 8.258007 AGAATTGAGAACGTTCATCAGGTATTA 58.742 33.333 28.78 13.34 0.00 0.98
570 574 7.574021 AGCATCATAATAGGTATTTCCTCCA 57.426 36.000 0.00 0.00 44.42 3.86
574 578 9.829507 CATCATAATAGGTATTTCCTCCATCTC 57.170 37.037 0.00 0.00 44.42 2.75
576 580 9.392506 TCATAATAGGTATTTCCTCCATCTCAA 57.607 33.333 0.00 0.00 44.42 3.02
582 586 8.107196 AGGTATTTCCTCCATCTCAAATAAGT 57.893 34.615 0.00 0.00 44.42 2.24
583 587 7.995488 AGGTATTTCCTCCATCTCAAATAAGTG 59.005 37.037 0.00 0.00 44.42 3.16
584 588 7.993183 GGTATTTCCTCCATCTCAAATAAGTGA 59.007 37.037 0.00 0.00 0.00 3.41
585 589 7.872113 ATTTCCTCCATCTCAAATAAGTGAC 57.128 36.000 0.00 0.00 0.00 3.67
586 590 6.627087 TTCCTCCATCTCAAATAAGTGACT 57.373 37.500 0.00 0.00 0.00 3.41
587 591 6.227298 TCCTCCATCTCAAATAAGTGACTC 57.773 41.667 0.00 0.00 0.00 3.36
588 592 5.721480 TCCTCCATCTCAAATAAGTGACTCA 59.279 40.000 0.00 0.00 0.00 3.41
589 593 6.213397 TCCTCCATCTCAAATAAGTGACTCAA 59.787 38.462 0.00 0.00 0.00 3.02
590 594 7.052873 CCTCCATCTCAAATAAGTGACTCAAT 58.947 38.462 0.00 0.00 0.00 2.57
591 595 7.226325 CCTCCATCTCAAATAAGTGACTCAATC 59.774 40.741 0.00 0.00 0.00 2.67
728 1989 4.757594 GCATGAAGCCATAAAAATGGACA 58.242 39.130 8.59 5.47 44.39 4.02
729 1990 5.177326 GCATGAAGCCATAAAAATGGACAA 58.823 37.500 8.59 0.00 44.39 3.18
730 1991 5.642919 GCATGAAGCCATAAAAATGGACAAA 59.357 36.000 8.59 0.00 44.39 2.83
731 1992 6.149142 GCATGAAGCCATAAAAATGGACAAAA 59.851 34.615 8.59 0.00 44.39 2.44
732 1993 7.520686 CATGAAGCCATAAAAATGGACAAAAC 58.479 34.615 8.59 0.00 44.39 2.43
733 1994 6.586344 TGAAGCCATAAAAATGGACAAAACA 58.414 32.000 8.59 0.00 44.39 2.83
734 1995 7.050377 TGAAGCCATAAAAATGGACAAAACAA 58.950 30.769 8.59 0.00 44.39 2.83
735 1996 7.554118 TGAAGCCATAAAAATGGACAAAACAAA 59.446 29.630 8.59 0.00 44.39 2.83
736 1997 7.495135 AGCCATAAAAATGGACAAAACAAAG 57.505 32.000 8.59 0.00 44.39 2.77
737 1998 6.486320 AGCCATAAAAATGGACAAAACAAAGG 59.514 34.615 8.59 0.00 44.39 3.11
738 1999 6.293900 GCCATAAAAATGGACAAAACAAAGGG 60.294 38.462 8.59 0.00 44.39 3.95
739 2000 6.770303 CCATAAAAATGGACAAAACAAAGGGT 59.230 34.615 0.00 0.00 44.39 4.34
740 2001 7.041440 CCATAAAAATGGACAAAACAAAGGGTC 60.041 37.037 0.00 0.00 44.39 4.46
741 2002 5.692115 AAAATGGACAAAACAAAGGGTCT 57.308 34.783 0.00 0.00 0.00 3.85
742 2003 4.670896 AATGGACAAAACAAAGGGTCTG 57.329 40.909 0.00 0.00 0.00 3.51
743 2004 3.094484 TGGACAAAACAAAGGGTCTGT 57.906 42.857 0.00 0.00 0.00 3.41
744 2005 3.020984 TGGACAAAACAAAGGGTCTGTC 58.979 45.455 0.00 0.00 33.92 3.51
745 2006 3.288092 GGACAAAACAAAGGGTCTGTCT 58.712 45.455 0.00 0.00 34.85 3.41
746 2007 4.080243 TGGACAAAACAAAGGGTCTGTCTA 60.080 41.667 0.00 0.00 34.85 2.59
747 2008 4.515567 GGACAAAACAAAGGGTCTGTCTAG 59.484 45.833 0.00 0.00 34.85 2.43
748 2009 4.461198 ACAAAACAAAGGGTCTGTCTAGG 58.539 43.478 0.00 0.00 0.00 3.02
749 2010 4.165372 ACAAAACAAAGGGTCTGTCTAGGA 59.835 41.667 0.00 0.00 0.00 2.94
750 2011 4.353383 AAACAAAGGGTCTGTCTAGGAC 57.647 45.455 0.00 0.00 0.00 3.85
751 2012 2.972348 ACAAAGGGTCTGTCTAGGACA 58.028 47.619 0.43 0.43 40.50 4.02
752 2013 2.633481 ACAAAGGGTCTGTCTAGGACAC 59.367 50.000 0.00 0.00 37.67 3.67
753 2014 2.632996 CAAAGGGTCTGTCTAGGACACA 59.367 50.000 3.18 0.00 39.36 3.72
754 2015 2.930109 AGGGTCTGTCTAGGACACAT 57.070 50.000 3.18 0.00 39.36 3.21
755 2016 2.741145 AGGGTCTGTCTAGGACACATC 58.259 52.381 3.18 0.00 39.36 3.06
756 2017 2.313342 AGGGTCTGTCTAGGACACATCT 59.687 50.000 3.18 0.00 39.36 2.90
757 2018 3.528078 AGGGTCTGTCTAGGACACATCTA 59.472 47.826 3.18 0.00 39.36 1.98
758 2019 4.017407 AGGGTCTGTCTAGGACACATCTAA 60.017 45.833 3.18 0.00 39.36 2.10
759 2020 4.710375 GGGTCTGTCTAGGACACATCTAAA 59.290 45.833 0.00 0.00 37.67 1.85
760 2021 5.364157 GGGTCTGTCTAGGACACATCTAAAT 59.636 44.000 0.00 0.00 37.67 1.40
761 2022 6.276847 GGTCTGTCTAGGACACATCTAAATG 58.723 44.000 0.00 0.00 37.67 2.32
789 2050 8.011844 ACATAGTTATGTCACATCTAAGCTGA 57.988 34.615 0.00 0.00 42.96 4.26
790 2051 8.646004 ACATAGTTATGTCACATCTAAGCTGAT 58.354 33.333 0.00 0.00 42.96 2.90
791 2052 9.486497 CATAGTTATGTCACATCTAAGCTGATT 57.514 33.333 0.00 0.00 0.00 2.57
793 2054 8.798859 AGTTATGTCACATCTAAGCTGATTTT 57.201 30.769 0.00 0.00 0.00 1.82
794 2055 8.887717 AGTTATGTCACATCTAAGCTGATTTTC 58.112 33.333 0.00 0.00 0.00 2.29
795 2056 8.668353 GTTATGTCACATCTAAGCTGATTTTCA 58.332 33.333 0.00 0.00 0.00 2.69
796 2057 6.486253 TGTCACATCTAAGCTGATTTTCAC 57.514 37.500 0.00 0.00 0.00 3.18
797 2058 6.233434 TGTCACATCTAAGCTGATTTTCACT 58.767 36.000 0.00 0.00 0.00 3.41
798 2059 6.369890 TGTCACATCTAAGCTGATTTTCACTC 59.630 38.462 0.00 0.00 0.00 3.51
799 2060 6.593382 GTCACATCTAAGCTGATTTTCACTCT 59.407 38.462 0.00 0.00 0.00 3.24
800 2061 6.592994 TCACATCTAAGCTGATTTTCACTCTG 59.407 38.462 0.00 0.00 0.00 3.35
801 2062 6.370994 CACATCTAAGCTGATTTTCACTCTGT 59.629 38.462 0.00 0.00 0.00 3.41
802 2063 6.939163 ACATCTAAGCTGATTTTCACTCTGTT 59.061 34.615 0.00 0.00 0.00 3.16
803 2064 7.446625 ACATCTAAGCTGATTTTCACTCTGTTT 59.553 33.333 0.00 0.00 0.00 2.83
804 2065 7.194607 TCTAAGCTGATTTTCACTCTGTTTG 57.805 36.000 0.00 0.00 0.00 2.93
805 2066 5.841957 AAGCTGATTTTCACTCTGTTTGT 57.158 34.783 0.00 0.00 0.00 2.83
806 2067 5.179045 AGCTGATTTTCACTCTGTTTGTG 57.821 39.130 0.00 0.00 36.82 3.33
807 2068 4.037208 AGCTGATTTTCACTCTGTTTGTGG 59.963 41.667 0.00 0.00 36.21 4.17
808 2069 4.202050 GCTGATTTTCACTCTGTTTGTGGT 60.202 41.667 0.00 0.00 36.21 4.16
809 2070 5.499139 TGATTTTCACTCTGTTTGTGGTC 57.501 39.130 0.00 0.00 36.21 4.02
810 2071 5.192927 TGATTTTCACTCTGTTTGTGGTCT 58.807 37.500 0.00 0.00 36.21 3.85
811 2072 6.353323 TGATTTTCACTCTGTTTGTGGTCTA 58.647 36.000 0.00 0.00 36.21 2.59
812 2073 6.998074 TGATTTTCACTCTGTTTGTGGTCTAT 59.002 34.615 0.00 0.00 36.21 1.98
813 2074 7.502226 TGATTTTCACTCTGTTTGTGGTCTATT 59.498 33.333 0.00 0.00 36.21 1.73
814 2075 7.639113 TTTTCACTCTGTTTGTGGTCTATTT 57.361 32.000 0.00 0.00 36.21 1.40
815 2076 7.639113 TTTCACTCTGTTTGTGGTCTATTTT 57.361 32.000 0.00 0.00 36.21 1.82
816 2077 7.639113 TTCACTCTGTTTGTGGTCTATTTTT 57.361 32.000 0.00 0.00 36.21 1.94
868 2129 9.821240 TTAATGCATTATATATTTGTGGGAGGT 57.179 29.630 19.51 0.00 0.00 3.85
869 2130 8.725606 AATGCATTATATATTTGTGGGAGGTT 57.274 30.769 11.02 0.00 0.00 3.50
870 2131 9.821240 AATGCATTATATATTTGTGGGAGGTTA 57.179 29.630 11.02 0.00 0.00 2.85
871 2132 8.862325 TGCATTATATATTTGTGGGAGGTTAG 57.138 34.615 0.00 0.00 0.00 2.34
872 2133 8.664992 TGCATTATATATTTGTGGGAGGTTAGA 58.335 33.333 0.00 0.00 0.00 2.10
873 2134 9.686683 GCATTATATATTTGTGGGAGGTTAGAT 57.313 33.333 0.00 0.00 0.00 1.98
877 2138 4.927267 ATTTGTGGGAGGTTAGATGTGA 57.073 40.909 0.00 0.00 0.00 3.58
878 2139 3.695830 TTGTGGGAGGTTAGATGTGAC 57.304 47.619 0.00 0.00 0.00 3.67
879 2140 2.615391 TGTGGGAGGTTAGATGTGACA 58.385 47.619 0.00 0.00 0.00 3.58
880 2141 3.181329 TGTGGGAGGTTAGATGTGACAT 58.819 45.455 0.00 0.00 0.00 3.06
881 2142 3.197766 TGTGGGAGGTTAGATGTGACATC 59.802 47.826 17.46 17.46 0.00 3.06
882 2143 2.771943 TGGGAGGTTAGATGTGACATCC 59.228 50.000 21.05 9.65 43.91 3.51
883 2144 3.041946 GGGAGGTTAGATGTGACATCCT 58.958 50.000 21.05 12.23 44.05 3.24
884 2145 3.456277 GGGAGGTTAGATGTGACATCCTT 59.544 47.826 21.05 7.22 44.05 3.36
885 2146 4.654262 GGGAGGTTAGATGTGACATCCTTA 59.346 45.833 21.05 6.22 44.05 2.69
886 2147 5.221541 GGGAGGTTAGATGTGACATCCTTAG 60.222 48.000 21.05 0.00 44.05 2.18
887 2148 5.598830 GGAGGTTAGATGTGACATCCTTAGA 59.401 44.000 21.05 1.44 42.00 2.10
888 2149 6.098409 GGAGGTTAGATGTGACATCCTTAGAA 59.902 42.308 21.05 6.23 42.00 2.10
889 2150 7.364762 GGAGGTTAGATGTGACATCCTTAGAAA 60.365 40.741 21.05 4.81 42.00 2.52
890 2151 7.918076 AGGTTAGATGTGACATCCTTAGAAAA 58.082 34.615 21.05 3.24 0.00 2.29
891 2152 7.824779 AGGTTAGATGTGACATCCTTAGAAAAC 59.175 37.037 21.05 13.12 0.00 2.43
892 2153 7.606456 GGTTAGATGTGACATCCTTAGAAAACA 59.394 37.037 21.05 0.00 0.00 2.83
893 2154 9.167311 GTTAGATGTGACATCCTTAGAAAACAT 57.833 33.333 21.05 1.75 0.00 2.71
894 2155 7.856145 AGATGTGACATCCTTAGAAAACATC 57.144 36.000 21.05 0.00 41.77 3.06
895 2156 7.628234 AGATGTGACATCCTTAGAAAACATCT 58.372 34.615 21.05 8.71 44.92 2.90
896 2157 8.762645 AGATGTGACATCCTTAGAAAACATCTA 58.237 33.333 21.05 0.00 46.74 1.98
897 2158 8.954950 ATGTGACATCCTTAGAAAACATCTAG 57.045 34.615 0.00 0.00 41.59 2.43
898 2159 8.134202 TGTGACATCCTTAGAAAACATCTAGA 57.866 34.615 0.00 0.00 41.59 2.43
899 2160 8.762645 TGTGACATCCTTAGAAAACATCTAGAT 58.237 33.333 0.00 0.00 41.59 1.98
900 2161 9.039870 GTGACATCCTTAGAAAACATCTAGATG 57.960 37.037 27.63 27.63 42.94 2.90
971 2232 2.355126 CGCGTGCACTGTCAGTCT 60.355 61.111 16.19 0.00 0.00 3.24
1015 2279 1.866496 GGAATGTCGTCGTCGTCGG 60.866 63.158 11.74 0.00 38.33 4.79
1420 2684 0.387112 CGTGGTTTCGCTACCGTGTA 60.387 55.000 2.04 0.00 41.28 2.90
1491 2755 0.179045 AGTGAGCTTTGGTTCGCTGT 60.179 50.000 0.00 0.00 40.91 4.40
1492 2756 0.663153 GTGAGCTTTGGTTCGCTGTT 59.337 50.000 0.00 0.00 36.45 3.16
1493 2757 1.065551 GTGAGCTTTGGTTCGCTGTTT 59.934 47.619 0.00 0.00 36.45 2.83
1494 2758 1.065401 TGAGCTTTGGTTCGCTGTTTG 59.935 47.619 0.00 0.00 36.45 2.93
1495 2759 1.333619 GAGCTTTGGTTCGCTGTTTGA 59.666 47.619 0.00 0.00 36.45 2.69
1496 2760 1.748493 AGCTTTGGTTCGCTGTTTGAA 59.252 42.857 0.00 0.00 34.69 2.69
1497 2761 1.852280 GCTTTGGTTCGCTGTTTGAAC 59.148 47.619 0.00 0.00 43.87 3.18
1513 2777 5.067674 TGTTTGAACTTTGAAGCTACTGCAT 59.932 36.000 0.00 0.00 42.74 3.96
1571 2835 2.678336 GAGGTCGGTGATTGGTGAATTC 59.322 50.000 0.00 0.00 0.00 2.17
1583 2847 2.089980 GGTGAATTCATGTGCTCAGCT 58.910 47.619 12.12 0.00 34.32 4.24
1584 2848 3.273434 GGTGAATTCATGTGCTCAGCTA 58.727 45.455 12.12 0.00 34.32 3.32
1789 3053 3.259751 GACGGGCATAACGGCGAC 61.260 66.667 16.62 0.00 42.43 5.19
2307 3572 9.686683 AACTGGTAAAAATAGAGTAGCATGATT 57.313 29.630 0.00 0.00 0.00 2.57
2468 3733 6.239120 CCTTTGAATGTTCATGACACCTCTTT 60.239 38.462 0.00 0.00 42.04 2.52
2574 3839 2.287194 ATGGAAGGGGTGGGGAGG 60.287 66.667 0.00 0.00 0.00 4.30
2584 3849 1.430075 GGGTGGGGAGGGAAAAAGTTA 59.570 52.381 0.00 0.00 0.00 2.24
3394 4697 3.624861 GGTGATGCTTCTAATGGTCACAG 59.375 47.826 0.88 0.00 38.10 3.66
3767 5078 9.952030 TTGATATGTGTATTTTCAGTACTTCCA 57.048 29.630 0.00 0.00 0.00 3.53
3797 5109 7.231317 TGAAGGCTGTAAGAATGAGATTTGTTT 59.769 33.333 0.00 0.00 34.07 2.83
3831 5143 6.867662 AAAACACACACAAATTTTGGTCAA 57.132 29.167 13.42 0.00 34.12 3.18
3880 5192 0.466555 TAACCACCAACCAGCCACAC 60.467 55.000 0.00 0.00 0.00 3.82
3921 5233 0.618680 TACTGGCTGGATCACTGGCT 60.619 55.000 12.85 1.41 42.88 4.75
4028 5340 3.133721 TCATGAAGCCTCTTTAGAGCCTC 59.866 47.826 0.00 0.00 40.75 4.70
4213 5525 3.429822 CCAACCGAATTAGTCCTCGCTTA 60.430 47.826 0.00 0.00 33.70 3.09
4266 5578 4.663636 AGTTACGCTTGTCAAATACAGC 57.336 40.909 0.00 0.00 39.87 4.40
4294 5606 8.576442 CACCAATAAAACCAGTGAAATTAGACT 58.424 33.333 0.00 0.00 0.00 3.24
4414 5726 5.432645 TGTACGCAAGGATAATCCATTGAA 58.567 37.500 0.00 0.00 39.61 2.69
4425 5737 7.667219 AGGATAATCCATTGAATTCGTATGCTT 59.333 33.333 12.53 10.73 39.61 3.91
4472 5784 0.890683 CTGCTTTCCCAATCCCACAC 59.109 55.000 0.00 0.00 0.00 3.82
4473 5785 0.482446 TGCTTTCCCAATCCCACACT 59.518 50.000 0.00 0.00 0.00 3.55
4487 5799 2.572104 CCCACACTAGCCTTTACTTCCT 59.428 50.000 0.00 0.00 0.00 3.36
4492 5804 4.263506 ACACTAGCCTTTACTTCCTGCATT 60.264 41.667 0.00 0.00 0.00 3.56
4587 7780 2.531206 CTAGCAGTAGGAGCGTTGTTC 58.469 52.381 0.00 0.00 37.01 3.18
4720 7913 5.766222 GAGCTTTATGTTTATGCTCATGGG 58.234 41.667 8.19 0.00 46.41 4.00
4858 8051 6.310711 TGGTGTTAATCGAAAACCAAACAAAC 59.689 34.615 10.47 2.25 37.96 2.93
4984 8177 0.965439 GGCCCACATGTAAACAAGCA 59.035 50.000 0.00 0.00 0.00 3.91
5088 8281 5.277683 CCTGAACAATTCGATTATGCCTGAG 60.278 44.000 0.00 0.00 0.00 3.35
5106 8299 5.529060 GCCTGAGCTTGCTTTACATAGTAAT 59.471 40.000 0.00 0.00 35.50 1.89
5107 8300 6.293135 GCCTGAGCTTGCTTTACATAGTAATC 60.293 42.308 0.00 0.00 35.50 1.75
5108 8301 6.763135 CCTGAGCTTGCTTTACATAGTAATCA 59.237 38.462 0.00 0.00 0.00 2.57
5109 8302 7.443575 CCTGAGCTTGCTTTACATAGTAATCAT 59.556 37.037 0.00 0.00 0.00 2.45
5110 8303 8.146479 TGAGCTTGCTTTACATAGTAATCATG 57.854 34.615 0.00 0.00 0.00 3.07
5111 8304 7.986889 TGAGCTTGCTTTACATAGTAATCATGA 59.013 33.333 0.00 0.00 0.00 3.07
5112 8305 8.915057 AGCTTGCTTTACATAGTAATCATGAT 57.085 30.769 1.18 1.18 0.00 2.45
5113 8306 9.347240 AGCTTGCTTTACATAGTAATCATGATT 57.653 29.630 23.75 23.75 34.93 2.57
5254 8452 1.131638 AGTGTTTCACTCCTCCTGCA 58.868 50.000 0.00 0.00 41.21 4.41
5369 8567 0.470833 CCCACCACCCATGAAAACCA 60.471 55.000 0.00 0.00 0.00 3.67
5370 8568 0.678950 CCACCACCCATGAAAACCAC 59.321 55.000 0.00 0.00 0.00 4.16
5440 8638 1.138859 CCATGCTCCATCGTTACCTGA 59.861 52.381 0.00 0.00 0.00 3.86
5665 8863 4.697514 TGCAGTAGAAGAAGGCATATCAC 58.302 43.478 0.00 0.00 0.00 3.06
5667 8865 4.443457 GCAGTAGAAGAAGGCATATCACCA 60.443 45.833 0.00 0.00 0.00 4.17
5673 8871 4.679373 AGAAGGCATATCACCAGTGTAG 57.321 45.455 0.00 0.00 0.00 2.74
5674 8872 3.389329 AGAAGGCATATCACCAGTGTAGG 59.611 47.826 0.00 0.00 0.00 3.18
5675 8873 3.046283 AGGCATATCACCAGTGTAGGA 57.954 47.619 0.00 0.00 0.00 2.94
5676 8874 3.591789 AGGCATATCACCAGTGTAGGAT 58.408 45.455 0.00 0.00 0.00 3.24
5677 8875 3.580458 AGGCATATCACCAGTGTAGGATC 59.420 47.826 0.00 0.00 0.00 3.36
5678 8876 3.324846 GGCATATCACCAGTGTAGGATCA 59.675 47.826 0.00 0.00 0.00 2.92
5679 8877 4.310769 GCATATCACCAGTGTAGGATCAC 58.689 47.826 0.00 0.00 38.46 3.06
5681 8879 5.777802 CATATCACCAGTGTAGGATCACTC 58.222 45.833 0.00 0.00 45.37 3.51
5682 8880 3.169512 TCACCAGTGTAGGATCACTCA 57.830 47.619 0.00 0.00 45.37 3.41
5683 8881 2.826128 TCACCAGTGTAGGATCACTCAC 59.174 50.000 0.00 0.22 45.37 3.51
5684 8882 1.819288 ACCAGTGTAGGATCACTCACG 59.181 52.381 0.00 0.00 45.37 4.35
5685 8883 1.135139 CCAGTGTAGGATCACTCACGG 59.865 57.143 0.00 1.27 45.37 4.94
5686 8884 1.819288 CAGTGTAGGATCACTCACGGT 59.181 52.381 0.00 0.00 45.37 4.83
5687 8885 1.819288 AGTGTAGGATCACTCACGGTG 59.181 52.381 0.56 0.56 44.07 4.94
5696 8894 4.007644 CTCACGGTGAGCCCAGCA 62.008 66.667 23.81 0.00 37.72 4.41
5697 8895 3.535629 CTCACGGTGAGCCCAGCAA 62.536 63.158 23.81 0.00 37.72 3.91
5698 8896 3.357079 CACGGTGAGCCCAGCAAC 61.357 66.667 0.74 0.00 40.63 4.17
5702 8900 2.047274 GTGAGCCCAGCAACGCTA 60.047 61.111 0.00 0.00 36.40 4.26
5703 8901 2.103042 GTGAGCCCAGCAACGCTAG 61.103 63.158 0.00 0.00 36.40 3.42
5704 8902 2.512515 GAGCCCAGCAACGCTAGG 60.513 66.667 0.00 0.00 40.32 3.02
5705 8903 3.003173 AGCCCAGCAACGCTAGGA 61.003 61.111 4.54 0.00 39.75 2.94
5706 8904 2.046314 GCCCAGCAACGCTAGGAA 60.046 61.111 4.54 0.00 39.75 3.36
5707 8905 1.452108 GCCCAGCAACGCTAGGAAT 60.452 57.895 4.54 0.00 39.75 3.01
5708 8906 1.718757 GCCCAGCAACGCTAGGAATG 61.719 60.000 4.54 0.00 39.75 2.67
5709 8907 1.718757 CCCAGCAACGCTAGGAATGC 61.719 60.000 0.00 0.00 39.75 3.56
5711 8909 2.772739 AGCAACGCTAGGAATGCTG 58.227 52.632 0.00 0.00 46.66 4.41
5712 8910 0.036010 AGCAACGCTAGGAATGCTGT 60.036 50.000 0.00 0.00 46.66 4.40
5713 8911 0.097674 GCAACGCTAGGAATGCTGTG 59.902 55.000 0.00 0.00 35.93 3.66
5714 8912 0.729116 CAACGCTAGGAATGCTGTGG 59.271 55.000 0.00 0.00 0.00 4.17
5715 8913 0.324943 AACGCTAGGAATGCTGTGGT 59.675 50.000 0.00 0.00 0.00 4.16
5716 8914 0.391661 ACGCTAGGAATGCTGTGGTG 60.392 55.000 0.00 0.00 0.00 4.17
5717 8915 0.391661 CGCTAGGAATGCTGTGGTGT 60.392 55.000 0.00 0.00 0.00 4.16
5718 8916 1.826385 GCTAGGAATGCTGTGGTGTT 58.174 50.000 0.00 0.00 0.00 3.32
5719 8917 1.470098 GCTAGGAATGCTGTGGTGTTG 59.530 52.381 0.00 0.00 0.00 3.33
5720 8918 1.470098 CTAGGAATGCTGTGGTGTTGC 59.530 52.381 0.00 0.00 0.00 4.17
5721 8919 0.467844 AGGAATGCTGTGGTGTTGCA 60.468 50.000 0.00 0.00 41.13 4.08
5722 8920 0.038892 GGAATGCTGTGGTGTTGCAG 60.039 55.000 0.00 0.00 40.18 4.41
5723 8921 0.670162 GAATGCTGTGGTGTTGCAGT 59.330 50.000 0.00 0.00 40.18 4.40
5724 8922 1.879380 GAATGCTGTGGTGTTGCAGTA 59.121 47.619 0.00 0.00 40.18 2.74
5725 8923 1.527034 ATGCTGTGGTGTTGCAGTAG 58.473 50.000 0.00 0.00 40.18 2.57
5726 8924 0.467804 TGCTGTGGTGTTGCAGTAGA 59.532 50.000 0.00 0.00 35.33 2.59
5727 8925 1.134250 TGCTGTGGTGTTGCAGTAGAA 60.134 47.619 0.00 0.00 35.33 2.10
5728 8926 1.532868 GCTGTGGTGTTGCAGTAGAAG 59.467 52.381 0.00 0.00 35.33 2.85
5729 8927 2.806745 GCTGTGGTGTTGCAGTAGAAGA 60.807 50.000 0.00 0.00 35.33 2.87
5730 8928 3.466836 CTGTGGTGTTGCAGTAGAAGAA 58.533 45.455 0.00 0.00 0.00 2.52
5731 8929 3.466836 TGTGGTGTTGCAGTAGAAGAAG 58.533 45.455 0.00 0.00 0.00 2.85
5732 8930 2.808543 GTGGTGTTGCAGTAGAAGAAGG 59.191 50.000 0.00 0.00 0.00 3.46
5733 8931 1.807142 GGTGTTGCAGTAGAAGAAGGC 59.193 52.381 0.00 0.00 0.00 4.35
5734 8932 2.494059 GTGTTGCAGTAGAAGAAGGCA 58.506 47.619 0.00 0.00 0.00 4.75
5735 8933 3.077359 GTGTTGCAGTAGAAGAAGGCAT 58.923 45.455 0.00 0.00 34.03 4.40
5736 8934 4.253685 GTGTTGCAGTAGAAGAAGGCATA 58.746 43.478 0.00 0.00 34.03 3.14
5737 8935 4.878397 GTGTTGCAGTAGAAGAAGGCATAT 59.122 41.667 0.00 0.00 34.03 1.78
5738 8936 5.007136 GTGTTGCAGTAGAAGAAGGCATATC 59.993 44.000 0.00 0.00 34.03 1.63
5739 8937 5.118990 GTTGCAGTAGAAGAAGGCATATCA 58.881 41.667 0.00 0.00 34.03 2.15
5740 8938 4.697514 TGCAGTAGAAGAAGGCATATCAC 58.302 43.478 0.00 0.00 0.00 3.06
5741 8939 4.061596 GCAGTAGAAGAAGGCATATCACC 58.938 47.826 0.00 0.00 0.00 4.02
5742 8940 4.443457 GCAGTAGAAGAAGGCATATCACCA 60.443 45.833 0.00 0.00 0.00 4.17
5743 8941 5.295950 CAGTAGAAGAAGGCATATCACCAG 58.704 45.833 0.00 0.00 0.00 4.00
5744 8942 4.965532 AGTAGAAGAAGGCATATCACCAGT 59.034 41.667 0.00 0.00 0.00 4.00
5745 8943 4.148128 AGAAGAAGGCATATCACCAGTG 57.852 45.455 0.00 0.00 0.00 3.66
5746 8944 3.521126 AGAAGAAGGCATATCACCAGTGT 59.479 43.478 0.00 0.00 0.00 3.55
5747 8945 4.716784 AGAAGAAGGCATATCACCAGTGTA 59.283 41.667 0.00 0.00 0.00 2.90
5775 8973 1.141019 GACGAAGGTGGCGCTGATA 59.859 57.895 7.64 0.00 0.00 2.15
5836 9034 4.104086 TCCCCATGAACATGTACTCTTCT 58.896 43.478 12.74 0.00 37.11 2.85
5865 9063 1.002868 CTGTGGGCTCAGTTCCTGG 60.003 63.158 0.00 0.00 31.51 4.45
5876 9074 0.537188 AGTTCCTGGGAGCATACACG 59.463 55.000 6.28 0.00 0.00 4.49
5881 9079 0.246360 CTGGGAGCATACACGTCACA 59.754 55.000 0.00 0.00 0.00 3.58
5885 9083 2.159156 GGGAGCATACACGTCACATACA 60.159 50.000 0.00 0.00 0.00 2.29
6038 9236 9.911788 ACTGATTTTTATCTATCCTGTGAACAT 57.088 29.630 0.00 0.00 0.00 2.71
6463 9662 0.563672 GAGAGGTAGGGATGGAGGGT 59.436 60.000 0.00 0.00 0.00 4.34
6539 9739 2.029964 GGACCGAGTTGGCGAACA 59.970 61.111 14.35 0.00 43.94 3.18
6602 9868 0.034186 TGGCTTTGGATTCGGCATCT 60.034 50.000 0.00 0.00 31.67 2.90
6605 9871 1.202336 GCTTTGGATTCGGCATCTTGG 60.202 52.381 0.00 0.00 31.67 3.61
6647 9913 4.102524 GGTGATGGTAGAGAGAGAGAGAGA 59.897 50.000 0.00 0.00 0.00 3.10
7020 10286 5.425539 TCCCTCTTAATGAACCGAAGAATCT 59.574 40.000 0.00 0.00 0.00 2.40
7136 10427 6.319152 TGAGGATTCTAAGCGGATATAGTAGC 59.681 42.308 0.00 0.00 0.00 3.58
7137 10428 5.595133 AGGATTCTAAGCGGATATAGTAGCC 59.405 44.000 0.00 0.00 0.00 3.93
7138 10429 5.360144 GGATTCTAAGCGGATATAGTAGCCA 59.640 44.000 0.00 0.00 32.61 4.75
7139 10430 6.041069 GGATTCTAAGCGGATATAGTAGCCAT 59.959 42.308 0.00 0.00 32.61 4.40
7140 10431 5.836821 TCTAAGCGGATATAGTAGCCATG 57.163 43.478 0.00 0.00 32.61 3.66
7141 10432 5.506708 TCTAAGCGGATATAGTAGCCATGA 58.493 41.667 0.00 0.00 32.61 3.07
7142 10433 6.129874 TCTAAGCGGATATAGTAGCCATGAT 58.870 40.000 0.00 0.00 32.61 2.45
7143 10434 5.683876 AAGCGGATATAGTAGCCATGATT 57.316 39.130 0.00 0.00 32.61 2.57
7144 10435 5.016051 AGCGGATATAGTAGCCATGATTG 57.984 43.478 0.00 0.00 32.61 2.67
7186 10477 4.119862 ACGCACATGCAATTACCTAGTAG 58.880 43.478 4.49 0.00 42.21 2.57
7275 10566 7.196331 ACTCAGTGCTTTGTTTTACTCATTTC 58.804 34.615 0.00 0.00 0.00 2.17
7744 11036 6.404954 GGGTCGTTTAGGCTGCATTTTTATTA 60.405 38.462 0.50 0.00 0.00 0.98
7745 11037 7.200455 GGTCGTTTAGGCTGCATTTTTATTAT 58.800 34.615 0.50 0.00 0.00 1.28
7746 11038 7.704899 GGTCGTTTAGGCTGCATTTTTATTATT 59.295 33.333 0.50 0.00 0.00 1.40
7747 11039 9.724839 GTCGTTTAGGCTGCATTTTTATTATTA 57.275 29.630 0.50 0.00 0.00 0.98
7790 11082 6.001460 CCAACATTGTAAGTAGAACTTGGGA 58.999 40.000 2.59 0.00 39.11 4.37
7912 11204 3.669023 GCCTTTGCTTGTCAAATCTCTCG 60.669 47.826 0.00 0.00 43.14 4.04
7978 11270 3.243569 CCTGAAGGCTCCGTCTATACTTG 60.244 52.174 3.68 0.00 0.00 3.16
8070 11362 2.180017 GGAAGCATGGCAACTGCG 59.820 61.111 7.38 0.00 44.38 5.18
8187 11480 4.854399 TCCGTGATTGCAAACTAAAGTTG 58.146 39.130 1.71 0.00 38.44 3.16
8194 11487 5.843673 TTGCAAACTAAAGTTGTCATCCA 57.156 34.783 0.00 0.00 38.44 3.41
8243 11536 3.428045 CGTTTGATTTGCCATCTTCTCCC 60.428 47.826 0.00 0.00 0.00 4.30
8310 11604 3.063997 CAGACGTTGCAAACTCAAGTCTT 59.936 43.478 0.00 0.00 46.99 3.01
8403 11799 4.376340 CTTGTCTTTGCAAGGACAACTT 57.624 40.909 38.33 0.00 44.28 2.66
8409 11805 2.254546 TGCAAGGACAACTTCATCGT 57.745 45.000 0.00 0.00 37.29 3.73
8555 11951 5.136828 ACCTAGTACATCACCATGAGAGAG 58.863 45.833 0.00 0.00 33.72 3.20
8559 11955 1.129917 CATCACCATGAGAGAGGGCT 58.870 55.000 0.00 0.00 30.57 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.448893 TTATTGACCACGCCGGAGC 60.449 57.895 5.05 0.00 38.63 4.70
80 81 2.186076 GCAGTAGACTTTGACGATCCG 58.814 52.381 0.00 0.00 0.00 4.18
82 83 2.924290 GGTGCAGTAGACTTTGACGATC 59.076 50.000 0.00 0.00 0.00 3.69
99 100 1.402325 GGTGGCTATCGTTTTTGGTGC 60.402 52.381 0.00 0.00 0.00 5.01
124 125 5.244626 AGGAAAAGTGTCCCATCTTTCAATG 59.755 40.000 0.00 0.00 38.59 2.82
127 128 4.104738 AGAGGAAAAGTGTCCCATCTTTCA 59.895 41.667 0.00 0.00 38.59 2.69
128 129 4.657013 AGAGGAAAAGTGTCCCATCTTTC 58.343 43.478 0.00 0.00 38.59 2.62
132 133 7.125792 TCTAATAGAGGAAAAGTGTCCCATC 57.874 40.000 0.00 0.00 38.59 3.51
134 135 6.945636 TTCTAATAGAGGAAAAGTGTCCCA 57.054 37.500 0.00 0.00 38.59 4.37
160 162 7.661437 CGTGAATCCCCATAGAAATCTGATAAA 59.339 37.037 0.00 0.00 0.00 1.40
161 163 7.161404 CGTGAATCCCCATAGAAATCTGATAA 58.839 38.462 0.00 0.00 0.00 1.75
185 187 8.837059 GCGGTAACAAAATTATTCATAATAGCG 58.163 33.333 0.00 0.00 32.91 4.26
291 293 5.514279 CCTTAAGCGGATCATGATCAAAAC 58.486 41.667 31.49 19.08 39.54 2.43
307 309 1.877576 GCCCCAGTTGTGCCTTAAGC 61.878 60.000 0.00 0.00 44.14 3.09
320 322 2.046892 CTCACAAGACCGCCCCAG 60.047 66.667 0.00 0.00 0.00 4.45
336 338 8.649841 CAAACAATGAATTTGCATTTATCGTCT 58.350 29.630 0.00 0.00 39.03 4.18
346 348 4.755629 CCATGTCCAAACAATGAATTTGCA 59.244 37.500 0.00 0.00 39.30 4.08
364 366 4.096382 GCACATCGGTTAATCTTTCCATGT 59.904 41.667 0.00 0.00 0.00 3.21
365 367 4.601019 GCACATCGGTTAATCTTTCCATG 58.399 43.478 0.00 0.00 0.00 3.66
382 384 4.699735 TCAACCATAAGAACATTCGCACAT 59.300 37.500 0.00 0.00 0.00 3.21
434 438 0.738389 GCATCCCACCATTTGTACCG 59.262 55.000 0.00 0.00 0.00 4.02
443 447 0.327924 AAGACGATTGCATCCCACCA 59.672 50.000 0.00 0.00 0.00 4.17
445 449 1.453155 ACAAGACGATTGCATCCCAC 58.547 50.000 0.00 0.00 0.00 4.61
564 568 5.721480 TGAGTCACTTATTTGAGATGGAGGA 59.279 40.000 0.00 0.00 0.00 3.71
565 569 5.982356 TGAGTCACTTATTTGAGATGGAGG 58.018 41.667 0.00 0.00 0.00 4.30
577 581 9.950496 AGTCACTTATTTGATTGAGTCACTTAT 57.050 29.630 0.00 0.00 36.32 1.73
578 582 9.424319 GAGTCACTTATTTGATTGAGTCACTTA 57.576 33.333 0.00 0.00 38.03 2.24
579 583 7.933577 TGAGTCACTTATTTGATTGAGTCACTT 59.066 33.333 0.00 0.00 41.41 3.16
580 584 7.445121 TGAGTCACTTATTTGATTGAGTCACT 58.555 34.615 0.00 0.00 41.41 3.41
581 585 7.658179 TGAGTCACTTATTTGATTGAGTCAC 57.342 36.000 0.00 0.00 41.41 3.67
582 586 8.853077 ATTGAGTCACTTATTTGATTGAGTCA 57.147 30.769 0.00 4.26 43.48 3.41
611 615 8.023021 TGATGACCTTGCTATAAAGTCAGTAT 57.977 34.615 0.00 0.00 0.00 2.12
627 631 6.959639 AACAGTTACATTGTTGATGACCTT 57.040 33.333 0.00 0.00 37.38 3.50
727 1988 4.515567 GTCCTAGACAGACCCTTTGTTTTG 59.484 45.833 0.00 0.00 32.09 2.44
728 1989 4.165372 TGTCCTAGACAGACCCTTTGTTTT 59.835 41.667 0.00 0.00 37.67 2.43
729 1990 3.714798 TGTCCTAGACAGACCCTTTGTTT 59.285 43.478 0.00 0.00 37.67 2.83
730 1991 3.071167 GTGTCCTAGACAGACCCTTTGTT 59.929 47.826 0.00 0.00 43.57 2.83
731 1992 2.633481 GTGTCCTAGACAGACCCTTTGT 59.367 50.000 0.00 0.00 43.57 2.83
732 1993 2.632996 TGTGTCCTAGACAGACCCTTTG 59.367 50.000 0.00 0.00 43.57 2.77
733 1994 2.972348 TGTGTCCTAGACAGACCCTTT 58.028 47.619 0.00 0.00 43.57 3.11
734 1995 2.696526 TGTGTCCTAGACAGACCCTT 57.303 50.000 0.00 0.00 43.57 3.95
735 1996 2.313342 AGATGTGTCCTAGACAGACCCT 59.687 50.000 0.00 0.00 43.57 4.34
736 1997 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
737 1998 5.916661 TTTAGATGTGTCCTAGACAGACC 57.083 43.478 0.00 0.00 43.57 3.85
738 1999 6.868622 ACATTTAGATGTGTCCTAGACAGAC 58.131 40.000 0.00 0.00 44.64 3.51
749 2010 9.890629 ACATAACTATGTCACATTTAGATGTGT 57.109 29.630 21.89 9.11 45.57 3.72
765 2026 9.486497 AATCAGCTTAGATGTGACATAACTATG 57.514 33.333 0.00 0.92 39.55 2.23
767 2028 9.890629 AAAATCAGCTTAGATGTGACATAACTA 57.109 29.630 0.00 0.00 0.00 2.24
768 2029 8.798859 AAAATCAGCTTAGATGTGACATAACT 57.201 30.769 0.00 0.00 0.00 2.24
769 2030 8.668353 TGAAAATCAGCTTAGATGTGACATAAC 58.332 33.333 0.00 0.00 0.00 1.89
770 2031 8.668353 GTGAAAATCAGCTTAGATGTGACATAA 58.332 33.333 0.00 0.00 0.00 1.90
771 2032 8.043113 AGTGAAAATCAGCTTAGATGTGACATA 58.957 33.333 0.00 0.00 0.00 2.29
772 2033 6.883217 AGTGAAAATCAGCTTAGATGTGACAT 59.117 34.615 0.00 0.00 0.00 3.06
773 2034 6.233434 AGTGAAAATCAGCTTAGATGTGACA 58.767 36.000 0.00 0.00 0.00 3.58
774 2035 6.593382 AGAGTGAAAATCAGCTTAGATGTGAC 59.407 38.462 0.00 0.00 30.01 3.67
775 2036 6.592994 CAGAGTGAAAATCAGCTTAGATGTGA 59.407 38.462 0.00 0.00 30.01 3.58
776 2037 6.370994 ACAGAGTGAAAATCAGCTTAGATGTG 59.629 38.462 0.00 0.00 30.01 3.21
777 2038 6.471146 ACAGAGTGAAAATCAGCTTAGATGT 58.529 36.000 0.00 0.00 30.01 3.06
778 2039 6.981762 ACAGAGTGAAAATCAGCTTAGATG 57.018 37.500 0.00 0.00 30.01 2.90
779 2040 7.446625 ACAAACAGAGTGAAAATCAGCTTAGAT 59.553 33.333 0.00 0.00 30.01 1.98
780 2041 6.767902 ACAAACAGAGTGAAAATCAGCTTAGA 59.232 34.615 0.00 0.00 30.01 2.10
781 2042 6.854892 CACAAACAGAGTGAAAATCAGCTTAG 59.145 38.462 0.00 0.00 39.30 2.18
782 2043 6.238731 CCACAAACAGAGTGAAAATCAGCTTA 60.239 38.462 0.00 0.00 39.30 3.09
783 2044 5.450965 CCACAAACAGAGTGAAAATCAGCTT 60.451 40.000 0.00 0.00 39.30 3.74
784 2045 4.037208 CCACAAACAGAGTGAAAATCAGCT 59.963 41.667 0.00 0.00 39.30 4.24
785 2046 4.202050 ACCACAAACAGAGTGAAAATCAGC 60.202 41.667 0.00 0.00 39.30 4.26
786 2047 5.297776 AGACCACAAACAGAGTGAAAATCAG 59.702 40.000 0.00 0.00 39.30 2.90
787 2048 5.192927 AGACCACAAACAGAGTGAAAATCA 58.807 37.500 0.00 0.00 39.30 2.57
788 2049 5.757850 AGACCACAAACAGAGTGAAAATC 57.242 39.130 0.00 0.00 39.30 2.17
789 2050 7.823745 AATAGACCACAAACAGAGTGAAAAT 57.176 32.000 0.00 0.00 39.30 1.82
790 2051 7.639113 AAATAGACCACAAACAGAGTGAAAA 57.361 32.000 0.00 0.00 39.30 2.29
791 2052 7.639113 AAAATAGACCACAAACAGAGTGAAA 57.361 32.000 0.00 0.00 39.30 2.69
792 2053 7.639113 AAAAATAGACCACAAACAGAGTGAA 57.361 32.000 0.00 0.00 39.30 3.18
842 2103 9.821240 ACCTCCCACAAATATATAATGCATTAA 57.179 29.630 22.37 12.35 0.00 1.40
843 2104 9.821240 AACCTCCCACAAATATATAATGCATTA 57.179 29.630 20.95 20.95 0.00 1.90
844 2105 8.725606 AACCTCCCACAAATATATAATGCATT 57.274 30.769 17.56 17.56 0.00 3.56
845 2106 9.466497 CTAACCTCCCACAAATATATAATGCAT 57.534 33.333 0.00 0.00 0.00 3.96
846 2107 8.664992 TCTAACCTCCCACAAATATATAATGCA 58.335 33.333 0.00 0.00 0.00 3.96
847 2108 9.686683 ATCTAACCTCCCACAAATATATAATGC 57.313 33.333 0.00 0.00 0.00 3.56
851 2112 9.387397 TCACATCTAACCTCCCACAAATATATA 57.613 33.333 0.00 0.00 0.00 0.86
852 2113 8.157476 GTCACATCTAACCTCCCACAAATATAT 58.843 37.037 0.00 0.00 0.00 0.86
853 2114 7.126573 TGTCACATCTAACCTCCCACAAATATA 59.873 37.037 0.00 0.00 0.00 0.86
854 2115 6.069673 TGTCACATCTAACCTCCCACAAATAT 60.070 38.462 0.00 0.00 0.00 1.28
855 2116 5.249622 TGTCACATCTAACCTCCCACAAATA 59.750 40.000 0.00 0.00 0.00 1.40
856 2117 4.042809 TGTCACATCTAACCTCCCACAAAT 59.957 41.667 0.00 0.00 0.00 2.32
857 2118 3.392947 TGTCACATCTAACCTCCCACAAA 59.607 43.478 0.00 0.00 0.00 2.83
858 2119 2.976185 TGTCACATCTAACCTCCCACAA 59.024 45.455 0.00 0.00 0.00 3.33
859 2120 2.615391 TGTCACATCTAACCTCCCACA 58.385 47.619 0.00 0.00 0.00 4.17
860 2121 3.432326 GGATGTCACATCTAACCTCCCAC 60.432 52.174 17.46 0.00 0.00 4.61
861 2122 2.771943 GGATGTCACATCTAACCTCCCA 59.228 50.000 17.46 0.00 0.00 4.37
862 2123 3.041946 AGGATGTCACATCTAACCTCCC 58.958 50.000 17.46 0.00 32.42 4.30
863 2124 4.762289 AAGGATGTCACATCTAACCTCC 57.238 45.455 17.46 0.18 32.24 4.30
864 2125 6.716934 TCTAAGGATGTCACATCTAACCTC 57.283 41.667 17.46 0.00 0.00 3.85
865 2126 7.496346 TTTCTAAGGATGTCACATCTAACCT 57.504 36.000 17.46 3.80 0.00 3.50
866 2127 7.606456 TGTTTTCTAAGGATGTCACATCTAACC 59.394 37.037 17.46 1.26 0.00 2.85
867 2128 8.547967 TGTTTTCTAAGGATGTCACATCTAAC 57.452 34.615 17.46 10.31 0.00 2.34
868 2129 9.383519 GATGTTTTCTAAGGATGTCACATCTAA 57.616 33.333 17.46 2.83 37.41 2.10
869 2130 8.762645 AGATGTTTTCTAAGGATGTCACATCTA 58.237 33.333 17.46 2.37 44.89 1.98
870 2131 7.628234 AGATGTTTTCTAAGGATGTCACATCT 58.372 34.615 17.46 1.18 42.98 2.90
871 2132 7.856145 AGATGTTTTCTAAGGATGTCACATC 57.144 36.000 9.53 9.53 39.62 3.06
872 2133 8.762645 TCTAGATGTTTTCTAAGGATGTCACAT 58.237 33.333 0.00 0.00 36.50 3.21
873 2134 8.134202 TCTAGATGTTTTCTAAGGATGTCACA 57.866 34.615 0.00 0.00 36.50 3.58
874 2135 9.039870 CATCTAGATGTTTTCTAAGGATGTCAC 57.960 37.037 22.42 0.00 36.15 3.67
891 2152 8.333908 GCAGTTTGTCTAATTCACATCTAGATG 58.666 37.037 27.63 27.63 44.15 2.90
892 2153 8.043113 TGCAGTTTGTCTAATTCACATCTAGAT 58.957 33.333 0.00 0.00 0.00 1.98
893 2154 7.386059 TGCAGTTTGTCTAATTCACATCTAGA 58.614 34.615 0.00 0.00 0.00 2.43
894 2155 7.601073 TGCAGTTTGTCTAATTCACATCTAG 57.399 36.000 0.00 0.00 0.00 2.43
895 2156 7.977789 TTGCAGTTTGTCTAATTCACATCTA 57.022 32.000 0.00 0.00 0.00 1.98
896 2157 6.882610 TTGCAGTTTGTCTAATTCACATCT 57.117 33.333 0.00 0.00 0.00 2.90
897 2158 7.434897 TGTTTTGCAGTTTGTCTAATTCACATC 59.565 33.333 0.00 0.00 0.00 3.06
898 2159 7.264221 TGTTTTGCAGTTTGTCTAATTCACAT 58.736 30.769 0.00 0.00 0.00 3.21
899 2160 6.625362 TGTTTTGCAGTTTGTCTAATTCACA 58.375 32.000 0.00 0.00 0.00 3.58
900 2161 7.518731 TTGTTTTGCAGTTTGTCTAATTCAC 57.481 32.000 0.00 0.00 0.00 3.18
901 2162 8.439286 GTTTTGTTTTGCAGTTTGTCTAATTCA 58.561 29.630 0.00 0.00 0.00 2.57
902 2163 7.902917 GGTTTTGTTTTGCAGTTTGTCTAATTC 59.097 33.333 0.00 0.00 0.00 2.17
903 2164 7.412455 CGGTTTTGTTTTGCAGTTTGTCTAATT 60.412 33.333 0.00 0.00 0.00 1.40
904 2165 6.035542 CGGTTTTGTTTTGCAGTTTGTCTAAT 59.964 34.615 0.00 0.00 0.00 1.73
905 2166 5.346281 CGGTTTTGTTTTGCAGTTTGTCTAA 59.654 36.000 0.00 0.00 0.00 2.10
906 2167 4.859798 CGGTTTTGTTTTGCAGTTTGTCTA 59.140 37.500 0.00 0.00 0.00 2.59
907 2168 3.677596 CGGTTTTGTTTTGCAGTTTGTCT 59.322 39.130 0.00 0.00 0.00 3.41
908 2169 3.723542 GCGGTTTTGTTTTGCAGTTTGTC 60.724 43.478 0.00 0.00 0.00 3.18
909 2170 2.158645 GCGGTTTTGTTTTGCAGTTTGT 59.841 40.909 0.00 0.00 0.00 2.83
910 2171 2.768222 GCGGTTTTGTTTTGCAGTTTG 58.232 42.857 0.00 0.00 0.00 2.93
911 2172 1.391826 CGCGGTTTTGTTTTGCAGTTT 59.608 42.857 0.00 0.00 0.00 2.66
912 2173 0.995728 CGCGGTTTTGTTTTGCAGTT 59.004 45.000 0.00 0.00 0.00 3.16
913 2174 0.109039 ACGCGGTTTTGTTTTGCAGT 60.109 45.000 12.47 0.00 0.00 4.40
914 2175 0.570272 GACGCGGTTTTGTTTTGCAG 59.430 50.000 12.47 0.00 0.00 4.41
915 2176 0.171455 AGACGCGGTTTTGTTTTGCA 59.829 45.000 12.47 0.00 0.00 4.08
916 2177 0.843872 GAGACGCGGTTTTGTTTTGC 59.156 50.000 12.47 0.00 0.00 3.68
1420 2684 0.537188 CCCAGCTACGGATCAAGTGT 59.463 55.000 0.00 0.00 0.00 3.55
1491 2755 5.067674 ACATGCAGTAGCTTCAAAGTTCAAA 59.932 36.000 0.00 0.00 42.74 2.69
1492 2756 4.580167 ACATGCAGTAGCTTCAAAGTTCAA 59.420 37.500 0.00 0.00 42.74 2.69
1493 2757 4.023792 CACATGCAGTAGCTTCAAAGTTCA 60.024 41.667 0.00 0.00 42.74 3.18
1494 2758 4.470462 CACATGCAGTAGCTTCAAAGTTC 58.530 43.478 0.00 0.00 42.74 3.01
1495 2759 3.304928 GCACATGCAGTAGCTTCAAAGTT 60.305 43.478 0.00 0.00 42.74 2.66
1496 2760 2.227388 GCACATGCAGTAGCTTCAAAGT 59.773 45.455 0.00 0.00 42.74 2.66
1497 2761 2.860062 GCACATGCAGTAGCTTCAAAG 58.140 47.619 0.00 0.00 42.74 2.77
1513 2777 0.392863 ATACAAGCTGCCGATGCACA 60.393 50.000 0.00 0.00 44.23 4.57
1539 2803 0.263172 ACCGACCTCAGATGGGAGAT 59.737 55.000 0.00 0.00 37.05 2.75
1571 2835 9.984190 ATCAGAATATATATAGCTGAGCACATG 57.016 33.333 22.43 0.00 38.79 3.21
1680 2944 0.459411 ATAGCGCACACGTGTATGCA 60.459 50.000 32.71 23.15 42.17 3.96
1759 3023 1.672356 CCCGTCAAGAACCTGCTGG 60.672 63.158 8.29 8.29 39.83 4.85
1789 3053 2.094258 CCTTGTATATATTGCAGCGGCG 59.906 50.000 0.51 0.51 45.35 6.46
2307 3572 8.472007 AATACATACAAGAAAGGAAAACACCA 57.528 30.769 0.00 0.00 0.00 4.17
2584 3849 9.287373 ACATTGAAACCAAGATTGCAATTAATT 57.713 25.926 14.33 6.53 0.00 1.40
2665 3930 3.442625 GGTTAGGTGAAGTGGGCATTAAC 59.557 47.826 0.00 0.00 0.00 2.01
2667 3932 2.645297 TGGTTAGGTGAAGTGGGCATTA 59.355 45.455 0.00 0.00 0.00 1.90
2668 3933 1.427368 TGGTTAGGTGAAGTGGGCATT 59.573 47.619 0.00 0.00 0.00 3.56
2669 3934 1.072266 TGGTTAGGTGAAGTGGGCAT 58.928 50.000 0.00 0.00 0.00 4.40
2670 3935 1.004277 GATGGTTAGGTGAAGTGGGCA 59.996 52.381 0.00 0.00 0.00 5.36
2671 3936 1.751437 GATGGTTAGGTGAAGTGGGC 58.249 55.000 0.00 0.00 0.00 5.36
2672 3937 1.553248 TCGATGGTTAGGTGAAGTGGG 59.447 52.381 0.00 0.00 0.00 4.61
2673 3938 3.328382 TTCGATGGTTAGGTGAAGTGG 57.672 47.619 0.00 0.00 0.00 4.00
3048 4350 4.643784 GGAGAAGTTGGAGCAATTCATGAT 59.356 41.667 0.00 0.00 0.00 2.45
3141 4444 2.203394 CCCGGCTAGCAATGGCAT 60.203 61.111 18.24 0.00 44.61 4.40
3313 4616 9.439500 TCACGCTAAATGTTTTACCTTAACTAT 57.561 29.630 0.00 0.00 0.00 2.12
3394 4697 9.807649 ATGTCTGGTTATGCAAGAAAAATAATC 57.192 29.630 0.00 0.00 0.00 1.75
3797 5109 5.139435 TGTGTGTGTTTTTCATGGTTCAA 57.861 34.783 0.00 0.00 0.00 2.69
3831 5143 7.044798 GCTAGATTTGTGTTTAGGACTCAGAT 58.955 38.462 0.00 0.00 33.68 2.90
3880 5192 4.758773 AAATTTGGCCATGGGAATACAG 57.241 40.909 15.13 0.00 0.00 2.74
3921 5233 9.063615 GTTTACTCAGGAAAAGAAATTGGAGTA 57.936 33.333 0.00 0.00 36.02 2.59
4028 5340 8.833493 TGATTACATCTGACAAAGATATTGCAG 58.167 33.333 0.00 0.00 44.24 4.41
4213 5525 2.943036 ACATGTTTACGGGGTTGTCT 57.057 45.000 0.00 0.00 0.00 3.41
4266 5578 3.634568 TTCACTGGTTTTATTGGTGCG 57.365 42.857 0.00 0.00 0.00 5.34
4414 5726 5.182001 GGGCATTCAGATTAAGCATACGAAT 59.818 40.000 0.00 0.00 0.00 3.34
4425 5737 2.378038 GCAGTTGGGGCATTCAGATTA 58.622 47.619 0.00 0.00 0.00 1.75
4472 5784 3.065925 GCAATGCAGGAAGTAAAGGCTAG 59.934 47.826 0.00 0.00 0.00 3.42
4473 5785 3.016736 GCAATGCAGGAAGTAAAGGCTA 58.983 45.455 0.00 0.00 0.00 3.93
4487 5799 2.956194 CTGCTGTTCGGCAATGCA 59.044 55.556 7.79 0.00 41.94 3.96
4512 5824 7.331193 CCAGCACGTTTAAGTACTAGAAAGATT 59.669 37.037 0.00 0.00 0.00 2.40
4720 7913 4.430007 TCAGCGTGACATAGTTTATCCAC 58.570 43.478 0.00 0.00 0.00 4.02
4858 8051 8.608844 AACTAAGAATTCAGTTAACTGTCAGG 57.391 34.615 29.83 17.28 44.12 3.86
4946 8139 5.104318 TGGGCCTTCAGTTTAAACCAAAAAT 60.104 36.000 14.72 0.00 0.00 1.82
5000 8193 7.589221 GCAAAAACAAAAACACAATCTGAACAA 59.411 29.630 0.00 0.00 0.00 2.83
5088 8281 9.956720 AAATCATGATTACTATGTAAAGCAAGC 57.043 29.630 21.00 0.00 0.00 4.01
5106 8299 5.004361 TGGTCCTTTGGGTAAAATCATGA 57.996 39.130 0.00 0.00 0.00 3.07
5107 8300 5.937975 ATGGTCCTTTGGGTAAAATCATG 57.062 39.130 0.00 0.00 0.00 3.07
5108 8301 6.155049 CAGAATGGTCCTTTGGGTAAAATCAT 59.845 38.462 0.00 0.00 0.00 2.45
5109 8302 5.480073 CAGAATGGTCCTTTGGGTAAAATCA 59.520 40.000 0.00 0.00 0.00 2.57
5110 8303 5.714806 TCAGAATGGTCCTTTGGGTAAAATC 59.285 40.000 0.00 0.00 36.16 2.17
5111 8304 5.650283 TCAGAATGGTCCTTTGGGTAAAAT 58.350 37.500 0.00 0.00 36.16 1.82
5112 8305 5.068215 TCAGAATGGTCCTTTGGGTAAAA 57.932 39.130 0.00 0.00 36.16 1.52
5113 8306 4.733077 TCAGAATGGTCCTTTGGGTAAA 57.267 40.909 0.00 0.00 36.16 2.01
5222 8420 5.555017 AGTGAAACACTGAATGCTATGTCT 58.445 37.500 3.54 0.00 43.63 3.41
5254 8452 5.940470 AGAAGTAAAAGCCATCGAGTGAAAT 59.060 36.000 0.00 0.00 0.00 2.17
5369 8567 2.378634 GCCAGGTCTGCTATGGGGT 61.379 63.158 0.00 0.00 34.52 4.95
5370 8568 1.925285 TTGCCAGGTCTGCTATGGGG 61.925 60.000 0.00 0.00 34.52 4.96
5592 8790 2.665000 CGTGCTCCACTCCACCAT 59.335 61.111 0.00 0.00 31.34 3.55
5677 8875 2.047844 CTGGGCTCACCGTGAGTG 60.048 66.667 25.77 12.51 45.94 3.51
5678 8876 4.008933 GCTGGGCTCACCGTGAGT 62.009 66.667 25.77 0.00 45.94 3.41
5679 8877 3.535629 TTGCTGGGCTCACCGTGAG 62.536 63.158 22.14 22.14 46.90 3.51
5680 8878 3.555324 TTGCTGGGCTCACCGTGA 61.555 61.111 0.29 0.29 44.64 4.35
5681 8879 3.357079 GTTGCTGGGCTCACCGTG 61.357 66.667 0.00 0.00 44.64 4.94
5682 8880 4.988598 CGTTGCTGGGCTCACCGT 62.989 66.667 0.00 0.00 44.64 4.83
5684 8882 3.605749 TAGCGTTGCTGGGCTCACC 62.606 63.158 0.70 0.00 40.10 4.02
5685 8883 2.047274 TAGCGTTGCTGGGCTCAC 60.047 61.111 0.70 0.00 40.10 3.51
5686 8884 2.265739 CTAGCGTTGCTGGGCTCA 59.734 61.111 0.70 0.00 40.10 4.26
5691 8889 0.745845 AGCATTCCTAGCGTTGCTGG 60.746 55.000 9.80 0.00 43.44 4.85
5692 8890 2.772739 AGCATTCCTAGCGTTGCTG 58.227 52.632 9.80 0.00 43.44 4.41
5693 8891 0.036010 ACAGCATTCCTAGCGTTGCT 60.036 50.000 5.89 5.89 45.86 3.91
5694 8892 0.097674 CACAGCATTCCTAGCGTTGC 59.902 55.000 0.00 1.93 37.01 4.17
5695 8893 0.729116 CCACAGCATTCCTAGCGTTG 59.271 55.000 0.00 0.00 37.01 4.10
5696 8894 0.324943 ACCACAGCATTCCTAGCGTT 59.675 50.000 0.00 0.00 37.01 4.84
5697 8895 0.391661 CACCACAGCATTCCTAGCGT 60.392 55.000 0.00 0.00 37.01 5.07
5698 8896 0.391661 ACACCACAGCATTCCTAGCG 60.392 55.000 0.00 0.00 37.01 4.26
5699 8897 1.470098 CAACACCACAGCATTCCTAGC 59.530 52.381 0.00 0.00 0.00 3.42
5700 8898 1.470098 GCAACACCACAGCATTCCTAG 59.530 52.381 0.00 0.00 0.00 3.02
5701 8899 1.202867 TGCAACACCACAGCATTCCTA 60.203 47.619 0.00 0.00 32.55 2.94
5702 8900 0.467844 TGCAACACCACAGCATTCCT 60.468 50.000 0.00 0.00 32.55 3.36
5703 8901 0.038892 CTGCAACACCACAGCATTCC 60.039 55.000 0.00 0.00 37.68 3.01
5704 8902 0.670162 ACTGCAACACCACAGCATTC 59.330 50.000 0.00 0.00 37.68 2.67
5705 8903 1.881973 CTACTGCAACACCACAGCATT 59.118 47.619 0.00 0.00 37.68 3.56
5706 8904 1.072173 TCTACTGCAACACCACAGCAT 59.928 47.619 0.00 0.00 37.68 3.79
5707 8905 0.467804 TCTACTGCAACACCACAGCA 59.532 50.000 0.00 0.00 37.42 4.41
5708 8906 1.532868 CTTCTACTGCAACACCACAGC 59.467 52.381 0.00 0.00 37.42 4.40
5709 8907 3.111853 TCTTCTACTGCAACACCACAG 57.888 47.619 0.00 0.00 39.86 3.66
5710 8908 3.466836 CTTCTTCTACTGCAACACCACA 58.533 45.455 0.00 0.00 0.00 4.17
5711 8909 2.808543 CCTTCTTCTACTGCAACACCAC 59.191 50.000 0.00 0.00 0.00 4.16
5712 8910 2.810400 GCCTTCTTCTACTGCAACACCA 60.810 50.000 0.00 0.00 0.00 4.17
5713 8911 1.807142 GCCTTCTTCTACTGCAACACC 59.193 52.381 0.00 0.00 0.00 4.16
5714 8912 2.494059 TGCCTTCTTCTACTGCAACAC 58.506 47.619 0.00 0.00 0.00 3.32
5715 8913 2.928801 TGCCTTCTTCTACTGCAACA 57.071 45.000 0.00 0.00 0.00 3.33
5716 8914 5.007136 GTGATATGCCTTCTTCTACTGCAAC 59.993 44.000 0.00 0.00 35.30 4.17
5717 8915 5.118990 GTGATATGCCTTCTTCTACTGCAA 58.881 41.667 0.00 0.00 35.30 4.08
5718 8916 4.443457 GGTGATATGCCTTCTTCTACTGCA 60.443 45.833 0.00 0.00 36.23 4.41
5719 8917 4.061596 GGTGATATGCCTTCTTCTACTGC 58.938 47.826 0.00 0.00 0.00 4.40
5720 8918 5.163364 ACTGGTGATATGCCTTCTTCTACTG 60.163 44.000 0.00 0.00 0.00 2.74
5721 8919 4.965532 ACTGGTGATATGCCTTCTTCTACT 59.034 41.667 0.00 0.00 0.00 2.57
5722 8920 5.053145 CACTGGTGATATGCCTTCTTCTAC 58.947 45.833 0.00 0.00 0.00 2.59
5723 8921 4.716784 ACACTGGTGATATGCCTTCTTCTA 59.283 41.667 7.78 0.00 0.00 2.10
5724 8922 3.521126 ACACTGGTGATATGCCTTCTTCT 59.479 43.478 7.78 0.00 0.00 2.85
5725 8923 3.878778 ACACTGGTGATATGCCTTCTTC 58.121 45.455 7.78 0.00 0.00 2.87
5726 8924 4.141620 CCTACACTGGTGATATGCCTTCTT 60.142 45.833 7.78 0.00 0.00 2.52
5727 8925 3.389329 CCTACACTGGTGATATGCCTTCT 59.611 47.826 7.78 0.00 0.00 2.85
5728 8926 3.388024 TCCTACACTGGTGATATGCCTTC 59.612 47.826 7.78 0.00 0.00 3.46
5729 8927 3.384168 TCCTACACTGGTGATATGCCTT 58.616 45.455 7.78 0.00 0.00 4.35
5730 8928 3.046283 TCCTACACTGGTGATATGCCT 57.954 47.619 7.78 0.00 0.00 4.75
5731 8929 3.324846 TGATCCTACACTGGTGATATGCC 59.675 47.826 7.78 0.00 0.00 4.40
5732 8930 4.310769 GTGATCCTACACTGGTGATATGC 58.689 47.826 7.78 0.00 37.73 3.14
5733 8931 4.590647 AGGTGATCCTACACTGGTGATATG 59.409 45.833 7.78 0.00 43.12 1.78
5734 8932 4.590647 CAGGTGATCCTACACTGGTGATAT 59.409 45.833 7.78 0.00 43.07 1.63
5735 8933 3.960755 CAGGTGATCCTACACTGGTGATA 59.039 47.826 7.78 0.00 43.07 2.15
5736 8934 2.768527 CAGGTGATCCTACACTGGTGAT 59.231 50.000 7.78 0.00 43.07 3.06
5737 8935 2.179427 CAGGTGATCCTACACTGGTGA 58.821 52.381 7.78 0.00 43.07 4.02
5738 8936 2.093973 GTCAGGTGATCCTACACTGGTG 60.094 54.545 0.00 0.00 43.07 4.17
5739 8937 2.180276 GTCAGGTGATCCTACACTGGT 58.820 52.381 0.00 0.00 43.07 4.00
5740 8938 1.135139 CGTCAGGTGATCCTACACTGG 59.865 57.143 0.00 0.00 43.07 4.00
5741 8939 2.092323 TCGTCAGGTGATCCTACACTG 58.908 52.381 0.00 0.00 43.07 3.66
5742 8940 2.509166 TCGTCAGGTGATCCTACACT 57.491 50.000 0.00 0.00 43.07 3.55
5743 8941 2.159226 CCTTCGTCAGGTGATCCTACAC 60.159 54.545 0.00 0.00 43.07 2.90
5744 8942 2.100197 CCTTCGTCAGGTGATCCTACA 58.900 52.381 0.00 0.00 43.07 2.74
5745 8943 2.873133 CCTTCGTCAGGTGATCCTAC 57.127 55.000 0.00 0.00 43.07 3.18
5775 8973 1.302832 GCTGCTGGCTACACTGGTT 60.303 57.895 0.00 0.00 38.06 3.67
5836 9034 0.396435 AGCCCACAGAAATGACGTCA 59.604 50.000 22.48 22.48 0.00 4.35
5865 9063 3.159353 TGTATGTGACGTGTATGCTCC 57.841 47.619 0.00 0.00 0.00 4.70
6038 9236 4.735985 CAGTTGATCGATGCCAATTCAAA 58.264 39.130 0.54 0.00 0.00 2.69
6463 9662 4.724602 GAGCGACGTCAGCCAGCA 62.725 66.667 22.55 0.00 34.64 4.41
6539 9739 2.437359 GTCCAGCCATCAAGCGCT 60.437 61.111 2.64 2.64 38.01 5.92
6602 9868 0.833949 TGTGGCAGTGTAGTGTCCAA 59.166 50.000 0.00 0.00 0.00 3.53
6605 9871 1.502231 CAGTGTGGCAGTGTAGTGTC 58.498 55.000 0.00 0.00 30.89 3.67
6973 10239 0.705253 TTCGGTTCCCCTCTCTCTCT 59.295 55.000 0.00 0.00 0.00 3.10
6974 10240 1.107945 CTTCGGTTCCCCTCTCTCTC 58.892 60.000 0.00 0.00 0.00 3.20
6975 10241 0.705253 TCTTCGGTTCCCCTCTCTCT 59.295 55.000 0.00 0.00 0.00 3.10
6976 10242 1.558233 TTCTTCGGTTCCCCTCTCTC 58.442 55.000 0.00 0.00 0.00 3.20
6977 10243 2.112190 GATTCTTCGGTTCCCCTCTCT 58.888 52.381 0.00 0.00 0.00 3.10
6978 10244 1.139256 GGATTCTTCGGTTCCCCTCTC 59.861 57.143 0.00 0.00 0.00 3.20
6979 10245 1.205055 GGATTCTTCGGTTCCCCTCT 58.795 55.000 0.00 0.00 0.00 3.69
6990 10256 5.671493 TCGGTTCATTAAGAGGGATTCTTC 58.329 41.667 0.00 0.00 42.54 2.87
7137 10428 1.205417 GGGGCTTGAACACCAATCATG 59.795 52.381 0.00 0.00 33.68 3.07
7138 10429 1.560505 GGGGCTTGAACACCAATCAT 58.439 50.000 0.00 0.00 33.68 2.45
7139 10430 0.893270 CGGGGCTTGAACACCAATCA 60.893 55.000 0.00 0.00 33.68 2.57
7140 10431 0.893727 ACGGGGCTTGAACACCAATC 60.894 55.000 0.00 0.00 33.68 2.67
7141 10432 0.469144 AACGGGGCTTGAACACCAAT 60.469 50.000 0.00 0.00 33.68 3.16
7142 10433 1.076632 AACGGGGCTTGAACACCAA 60.077 52.632 0.00 0.00 0.00 3.67
7143 10434 1.826054 CAACGGGGCTTGAACACCA 60.826 57.895 0.00 0.00 0.00 4.17
7144 10435 3.039134 CAACGGGGCTTGAACACC 58.961 61.111 0.00 0.00 0.00 4.16
7186 10477 5.046950 TCCAACCCATTACAATGCTTAAACC 60.047 40.000 0.00 0.00 35.08 3.27
7193 10484 4.535526 AAGTTCCAACCCATTACAATGC 57.464 40.909 0.00 0.00 35.08 3.56
7275 10566 9.405587 TGAGTAAAACAAAGAAAGTTCAAACAG 57.594 29.630 0.00 0.00 0.00 3.16
7365 10656 8.255206 CCAGTGTAGTACATCAACTTACCATTA 58.745 37.037 6.21 0.00 0.00 1.90
7469 10760 4.389374 ACTGATGTACCTTCACTTGGTTG 58.611 43.478 0.00 0.00 38.88 3.77
7744 11036 5.190925 TGGCTAGTTCCCCGCATAATATAAT 59.809 40.000 0.00 0.00 0.00 1.28
7745 11037 4.532916 TGGCTAGTTCCCCGCATAATATAA 59.467 41.667 0.00 0.00 0.00 0.98
7746 11038 4.098155 TGGCTAGTTCCCCGCATAATATA 58.902 43.478 0.00 0.00 0.00 0.86
7747 11039 2.910319 TGGCTAGTTCCCCGCATAATAT 59.090 45.455 0.00 0.00 0.00 1.28
7790 11082 6.064717 ACTCACTAGCTTCACAAATCCTTTT 58.935 36.000 0.00 0.00 0.00 2.27
7912 11204 7.917720 TGTTTAAAAGGACATAGAAAAACGC 57.082 32.000 0.00 0.00 0.00 4.84
8162 11455 5.519722 ACTTTAGTTTGCAATCACGGAAAG 58.480 37.500 19.50 19.50 31.85 2.62
8187 11480 7.790000 GCAATTTATATTGTTGCATGGATGAC 58.210 34.615 7.59 0.00 45.57 3.06
8290 11583 3.354397 CAAGACTTGAGTTTGCAACGTC 58.646 45.455 9.76 0.00 36.23 4.34
8292 11585 2.111756 GCAAGACTTGAGTTTGCAACG 58.888 47.619 19.51 0.00 44.88 4.10
8374 11770 0.817634 TGCAAAGACAAGGTGGGACG 60.818 55.000 0.00 0.00 0.00 4.79
8385 11781 8.592471 AACGATGAAGTTGTCCTTGCAAAGAC 62.592 42.308 19.30 19.30 38.50 3.01
8403 11799 4.092821 GGACGATTTGATGAACAACGATGA 59.907 41.667 0.00 0.00 38.29 2.92
8409 11805 7.390440 AGACATTAAGGACGATTTGATGAACAA 59.610 33.333 0.00 0.00 36.65 2.83
8555 11951 0.625849 TCCAATCTCAAAGGGAGCCC 59.374 55.000 0.00 0.00 43.70 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.