Multiple sequence alignment - TraesCS3A01G195200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G195200 chr3A 100.000 5958 0 0 1 5958 278740407 278734450 0.000000e+00 11003.0
1 TraesCS3A01G195200 chr3A 77.228 202 34 10 421 617 210157259 210157453 2.270000e-19 108.0
2 TraesCS3A01G195200 chr3D 98.716 3815 47 2 761 4574 213678057 213681870 0.000000e+00 6772.0
3 TraesCS3A01G195200 chr3D 98.393 809 13 0 4571 5379 213681899 213682707 0.000000e+00 1423.0
4 TraesCS3A01G195200 chr3D 90.530 792 53 14 1 774 213675624 213676411 0.000000e+00 1027.0
5 TraesCS3A01G195200 chr3D 91.197 568 21 11 5397 5958 213682984 213683528 0.000000e+00 745.0
6 TraesCS3A01G195200 chr3D 84.738 439 60 4 1 433 58601985 58602422 3.300000e-117 433.0
7 TraesCS3A01G195200 chr3D 85.161 310 38 6 5656 5958 184585450 184585142 1.610000e-80 311.0
8 TraesCS3A01G195200 chr3D 89.691 97 9 1 3981 4077 477907447 477907352 8.110000e-24 122.0
9 TraesCS3A01G195200 chr3B 97.783 3925 67 9 650 4572 286889537 286893443 0.000000e+00 6748.0
10 TraesCS3A01G195200 chr3B 97.065 920 22 2 4571 5490 286893474 286894388 0.000000e+00 1544.0
11 TraesCS3A01G195200 chr3B 93.046 417 23 6 5547 5958 286894798 286895213 6.600000e-169 604.0
12 TraesCS3A01G195200 chr3B 86.270 437 53 4 3 433 456319662 456320097 9.040000e-128 468.0
13 TraesCS3A01G195200 chr3B 84.475 438 58 8 3 433 97704475 97704909 1.980000e-114 424.0
14 TraesCS3A01G195200 chr3B 89.691 97 9 1 3981 4077 637089785 637089690 8.110000e-24 122.0
15 TraesCS3A01G195200 chr3B 83.019 106 14 4 489 592 466973979 466974082 6.360000e-15 93.5
16 TraesCS3A01G195200 chr3B 89.333 75 6 2 489 562 613641262 613641189 6.360000e-15 93.5
17 TraesCS3A01G195200 chr6D 86.806 432 48 4 4 429 387415468 387415040 1.940000e-129 473.0
18 TraesCS3A01G195200 chr6D 90.179 112 11 0 648 759 387415043 387414932 4.810000e-31 147.0
19 TraesCS3A01G195200 chr2D 85.355 437 55 8 3 433 241696296 241695863 1.520000e-120 444.0
20 TraesCS3A01G195200 chr2D 87.050 139 14 3 489 623 52235183 52235321 2.880000e-33 154.0
21 TraesCS3A01G195200 chr2D 92.135 89 6 1 3985 4073 86080997 86080910 2.250000e-24 124.0
22 TraesCS3A01G195200 chr2D 91.228 57 1 4 3684 3737 47631359 47631304 2.300000e-09 75.0
23 TraesCS3A01G195200 chr6A 84.510 439 61 7 1 433 155747566 155748003 1.530000e-115 427.0
24 TraesCS3A01G195200 chr6A 90.196 51 2 3 3686 3733 115345506 115345456 4.980000e-06 63.9
25 TraesCS3A01G195200 chr7B 84.439 437 60 5 3 433 609890927 609890493 1.980000e-114 424.0
26 TraesCS3A01G195200 chr2A 84.318 440 61 8 1 433 348049728 348049290 1.980000e-114 424.0
27 TraesCS3A01G195200 chr2A 93.258 89 5 1 3985 4073 86440627 86440540 4.850000e-26 130.0
28 TraesCS3A01G195200 chr2A 82.609 115 11 9 486 595 30565236 30565126 6.360000e-15 93.5
29 TraesCS3A01G195200 chr2A 91.304 46 0 4 3692 3733 468290441 468290396 6.450000e-05 60.2
30 TraesCS3A01G195200 chr7D 91.639 299 22 3 5662 5958 45105835 45105538 1.550000e-110 411.0
31 TraesCS3A01G195200 chr7D 82.857 140 16 6 489 623 173900837 173900973 1.050000e-22 119.0
32 TraesCS3A01G195200 chr7D 88.660 97 8 3 3974 4070 59711387 59711294 1.360000e-21 115.0
33 TraesCS3A01G195200 chr7D 94.444 36 1 1 3696 3730 499888752 499888717 3.000000e-03 54.7
34 TraesCS3A01G195200 chr2B 87.459 303 30 4 5657 5958 442605224 442604929 5.720000e-90 342.0
35 TraesCS3A01G195200 chr2B 88.000 250 27 3 5711 5958 463356818 463356570 5.840000e-75 292.0
36 TraesCS3A01G195200 chr2B 84.459 296 44 2 5656 5949 110678023 110678318 2.100000e-74 291.0
37 TraesCS3A01G195200 chr6B 83.495 309 40 7 5656 5958 47195090 47195393 1.640000e-70 278.0
38 TraesCS3A01G195200 chr6B 86.957 69 8 1 3666 3733 431160255 431160187 6.400000e-10 76.8
39 TraesCS3A01G195200 chr6B 86.957 69 8 1 3666 3733 431204133 431204065 6.400000e-10 76.8
40 TraesCS3A01G195200 chr4B 89.545 220 20 3 5659 5876 239437725 239437507 5.880000e-70 276.0
41 TraesCS3A01G195200 chr4B 93.103 87 5 1 3984 4070 41531416 41531501 6.270000e-25 126.0
42 TraesCS3A01G195200 chr4D 83.969 131 18 3 491 619 70326366 70326237 8.110000e-24 122.0
43 TraesCS3A01G195200 chr4A 90.426 94 8 1 3985 4078 27643526 27643618 8.110000e-24 122.0
44 TraesCS3A01G195200 chr1A 81.955 133 19 3 494 621 9604198 9604330 2.270000e-19 108.0
45 TraesCS3A01G195200 chr5A 85.567 97 11 3 489 583 90929875 90929780 1.370000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G195200 chr3A 278734450 278740407 5957 True 11003.000000 11003 100.000000 1 5958 1 chr3A.!!$R1 5957
1 TraesCS3A01G195200 chr3D 213675624 213683528 7904 False 2491.750000 6772 94.709000 1 5958 4 chr3D.!!$F2 5957
2 TraesCS3A01G195200 chr3B 286889537 286895213 5676 False 2965.333333 6748 95.964667 650 5958 3 chr3B.!!$F4 5308
3 TraesCS3A01G195200 chr6D 387414932 387415468 536 True 310.000000 473 88.492500 4 759 2 chr6D.!!$R1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 657 0.796312 CTTCGTGCCACATGTACACC 59.204 55.000 19.90 7.62 0.00 4.16 F
1871 3561 1.372683 GTTCAGTGGCCAGAGCTCA 59.627 57.895 17.77 0.00 39.73 4.26 F
3073 4763 0.106335 CTGCCTCCGATGCTCTTGAT 59.894 55.000 0.00 0.00 0.00 2.57 F
3448 5138 4.940905 GGTAAGTCACCTCCTATCTTCC 57.059 50.000 0.00 0.00 44.79 3.46 F
3673 5363 5.239306 TGTTCTTGATTGCTACTGGTCAAAG 59.761 40.000 0.00 0.00 30.96 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 3819 2.128771 AGCGACTTACTACCGGGTAA 57.871 50.000 6.32 4.66 0.0 2.85 R
3448 5138 1.075600 GAGTGGGGAGGGAGAGAGG 60.076 68.421 0.00 0.00 0.0 3.69 R
4285 5975 1.517257 CTCTTCTGCCAGCGTACGG 60.517 63.158 18.39 1.04 0.0 4.02 R
4578 6300 2.295472 CTGAGAGCTCCCTTCCTGCG 62.295 65.000 10.93 0.00 0.0 5.18 R
5668 8031 0.245539 CCAAAGTGCTGCCTCCATTG 59.754 55.000 0.00 0.10 0.0 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 2.604046 ATTTCGGAACTCCATCCTCG 57.396 50.000 0.00 0.00 37.34 4.63
76 78 2.224281 TGAGACACACATCTTCCACCAC 60.224 50.000 0.00 0.00 0.00 4.16
96 98 4.571984 CCACGTCATTGAATGCATTCTCTA 59.428 41.667 33.23 21.40 37.67 2.43
97 99 5.237996 CCACGTCATTGAATGCATTCTCTAT 59.762 40.000 33.23 22.41 37.67 1.98
105 107 8.968242 CATTGAATGCATTCTCTATTGATTGTG 58.032 33.333 33.23 14.72 37.67 3.33
129 131 2.035626 ACCCCACCAAGATTGCGG 59.964 61.111 0.00 0.00 0.00 5.69
155 157 3.578688 GTGTCAATGATTCCCTTGCAAC 58.421 45.455 0.00 0.00 0.00 4.17
207 209 7.136822 TGACATAAGTTGGGATAGCTTGTAT 57.863 36.000 0.00 0.00 31.79 2.29
220 222 6.128526 GGATAGCTTGTATAACCGATTTGAGC 60.129 42.308 0.00 0.00 0.00 4.26
232 234 5.610398 ACCGATTTGAGCAAAATTTCCTTT 58.390 33.333 0.00 0.00 38.64 3.11
238 240 3.578282 TGAGCAAAATTTCCTTTCCTCCC 59.422 43.478 0.00 0.00 30.14 4.30
399 406 7.398829 TCAGGATAGTACAAATTTGTGCCTTA 58.601 34.615 29.72 18.90 43.58 2.69
404 411 6.803154 AGTACAAATTTGTGCCTTAGTCTC 57.197 37.500 29.72 9.69 43.58 3.36
413 420 3.075148 GTGCCTTAGTCTCCCACTTTTC 58.925 50.000 0.00 0.00 36.43 2.29
530 560 3.709987 AGCATGTCAACTTTCTGTTTGC 58.290 40.909 0.00 0.00 38.35 3.68
541 571 4.996758 ACTTTCTGTTTGCTTGCAAGTTTT 59.003 33.333 26.55 0.00 0.00 2.43
544 574 5.323371 TCTGTTTGCTTGCAAGTTTTAGT 57.677 34.783 26.55 0.00 0.00 2.24
545 575 5.719173 TCTGTTTGCTTGCAAGTTTTAGTT 58.281 33.333 26.55 0.00 0.00 2.24
546 576 6.162777 TCTGTTTGCTTGCAAGTTTTAGTTT 58.837 32.000 26.55 0.00 0.00 2.66
547 577 6.648725 TCTGTTTGCTTGCAAGTTTTAGTTTT 59.351 30.769 26.55 0.00 0.00 2.43
548 578 7.172361 TCTGTTTGCTTGCAAGTTTTAGTTTTT 59.828 29.630 26.55 0.00 0.00 1.94
627 657 0.796312 CTTCGTGCCACATGTACACC 59.204 55.000 19.90 7.62 0.00 4.16
675 705 3.914426 ACTAGATCTTTCAACGCCCAT 57.086 42.857 0.00 0.00 0.00 4.00
698 728 2.587322 TTATCCCGAGGCGGCACAAG 62.587 60.000 13.08 0.00 46.86 3.16
777 2466 3.948735 GCCAGTGGCCTACTTTACA 57.051 52.632 24.53 0.00 44.06 2.41
778 2467 1.450025 GCCAGTGGCCTACTTTACAC 58.550 55.000 24.53 0.00 44.06 2.90
890 2580 2.086610 AAAACTGTTGGCACATCCCT 57.913 45.000 0.00 0.00 39.30 4.20
1227 2917 2.584608 CCTCAGGCGGTACCCTTG 59.415 66.667 6.25 6.26 40.58 3.61
1280 2970 2.041922 CCTCCCCACATCCTCCGA 60.042 66.667 0.00 0.00 0.00 4.55
1428 3118 2.463752 TCCTTACCGCAGTAATGTCCT 58.536 47.619 0.00 0.00 37.81 3.85
1524 3214 3.183775 GTCGAGTTGTGAATTACGCTTGT 59.816 43.478 0.00 0.00 0.00 3.16
1871 3561 1.372683 GTTCAGTGGCCAGAGCTCA 59.627 57.895 17.77 0.00 39.73 4.26
1901 3591 3.871006 GACTGTCGATTATGTGCATCCAA 59.129 43.478 0.00 0.00 0.00 3.53
2129 3819 2.048222 CGGTGTCAGCGGATGTGT 60.048 61.111 16.53 0.00 35.16 3.72
2452 4142 4.394300 GGATCAACACCTCATTCTGTTCAG 59.606 45.833 0.00 0.00 0.00 3.02
2588 4278 1.149288 TGAGGGTTCCTGTCCTACAGT 59.851 52.381 6.33 0.00 44.50 3.55
2918 4608 4.929808 AGTTTGCAGTCCGTTACTCTAATG 59.070 41.667 0.00 0.00 35.76 1.90
2972 4662 1.164411 CAGGCTGCAAACGGTTGATA 58.836 50.000 19.48 3.68 36.83 2.15
3073 4763 0.106335 CTGCCTCCGATGCTCTTGAT 59.894 55.000 0.00 0.00 0.00 2.57
3448 5138 4.940905 GGTAAGTCACCTCCTATCTTCC 57.059 50.000 0.00 0.00 44.79 3.46
3673 5363 5.239306 TGTTCTTGATTGCTACTGGTCAAAG 59.761 40.000 0.00 0.00 30.96 2.77
3751 5441 7.711339 AGGGATATTTGAATAGAACGTGACTTC 59.289 37.037 0.00 0.00 0.00 3.01
3791 5481 5.680594 AATGAAGCATGGGATTTTAGCAA 57.319 34.783 0.00 0.00 0.00 3.91
4210 5900 8.680903 CAAAGAGTAATATTTCCTGAGTTGCAT 58.319 33.333 0.00 0.00 0.00 3.96
4388 6078 5.291971 CCAACCTTGACTTTGATTTCCAAG 58.708 41.667 0.00 0.00 35.94 3.61
4436 6126 6.804677 TCTCTTATCAACTCTTCTGCTCATC 58.195 40.000 0.00 0.00 0.00 2.92
4437 6127 6.379417 TCTCTTATCAACTCTTCTGCTCATCA 59.621 38.462 0.00 0.00 0.00 3.07
4578 6300 3.942130 AGGTAAATGCTTTGTTCTGGC 57.058 42.857 0.00 0.00 0.00 4.85
4972 6694 6.340522 ACCAAGCTAATGCAAATAATTGGAC 58.659 36.000 22.65 0.45 39.86 4.02
4992 6714 3.845178 ACGAGTGCAATCAGAAACGATA 58.155 40.909 15.31 0.00 0.00 2.92
4993 6715 4.433615 ACGAGTGCAATCAGAAACGATAT 58.566 39.130 15.31 0.00 0.00 1.63
4995 6717 5.351465 ACGAGTGCAATCAGAAACGATATTT 59.649 36.000 15.31 0.00 0.00 1.40
5002 6724 7.227314 TGCAATCAGAAACGATATTTGATAGCT 59.773 33.333 0.00 0.00 0.00 3.32
5414 7395 5.399301 GTGTTGCTTAGTGTTTACAGCATTG 59.601 40.000 0.00 0.00 32.14 2.82
5448 7429 9.952030 TCTTGATTTGTGGTTGTAAGTGATATA 57.048 29.630 0.00 0.00 0.00 0.86
5541 7522 3.926527 ACAGAAGTATGTGCACGTGTATG 59.073 43.478 21.92 15.13 30.46 2.39
5566 7924 5.870978 AGCCATTTTGCAGTCATTTATGAAC 59.129 36.000 0.00 0.00 38.75 3.18
5668 8031 0.472898 GGGGGTCTTAGGGCATGTAC 59.527 60.000 0.00 0.00 0.00 2.90
5745 8108 1.135139 AGCTACTCGTGTGTGCCATAG 59.865 52.381 11.78 0.00 0.00 2.23
5753 8116 0.324614 TGTGTGCCATAGTCACCCAG 59.675 55.000 0.00 0.00 33.71 4.45
5823 8187 7.706179 CACATACTTTCAAACACATGAAACCTT 59.294 33.333 0.00 0.00 42.68 3.50
5831 8197 6.375736 TCAAACACATGAAACCTTCACTACAA 59.624 34.615 0.00 0.00 43.48 2.41
5834 8200 7.346751 ACACATGAAACCTTCACTACAATTT 57.653 32.000 0.00 0.00 43.48 1.82
5848 8214 8.039603 TCACTACAATTTAACAATACCAGCAG 57.960 34.615 0.00 0.00 0.00 4.24
5849 8215 7.880713 TCACTACAATTTAACAATACCAGCAGA 59.119 33.333 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.744202 CAAAAGACCAACGAGGATGGAG 59.256 50.000 5.70 0.00 40.56 3.86
76 78 6.951643 TCAATAGAGAATGCATTCAATGACG 58.048 36.000 34.59 20.88 39.23 4.35
105 107 0.036306 ATCTTGGTGGGGTGACGAAC 59.964 55.000 0.00 0.00 0.00 3.95
129 131 2.292267 AGGGAATCATTGACACGATGC 58.708 47.619 0.00 0.00 0.00 3.91
185 187 7.937394 GGTTATACAAGCTATCCCAACTTATGT 59.063 37.037 0.00 0.00 0.00 2.29
207 209 6.339587 AGGAAATTTTGCTCAAATCGGTTA 57.660 33.333 0.00 0.00 33.60 2.85
220 222 2.671070 CGCGGGAGGAAAGGAAATTTTG 60.671 50.000 0.00 0.00 0.00 2.44
232 234 3.553828 AGAAAATTATTCGCGGGAGGA 57.446 42.857 6.13 0.00 0.00 3.71
238 240 5.455525 GTGGATGGAAAGAAAATTATTCGCG 59.544 40.000 0.00 0.00 0.00 5.87
301 308 9.835389 AAATGTGGGTATGGATAAAAATGATTG 57.165 29.630 0.00 0.00 0.00 2.67
303 310 7.933033 GCAAATGTGGGTATGGATAAAAATGAT 59.067 33.333 0.00 0.00 0.00 2.45
399 406 2.158608 CCCAACAGAAAAGTGGGAGACT 60.159 50.000 1.48 0.00 42.21 3.24
404 411 2.364972 AGTCCCAACAGAAAAGTGGG 57.635 50.000 1.28 1.28 41.03 4.61
413 420 9.799106 AGGATCATATATTTTTAGTCCCAACAG 57.201 33.333 0.00 0.00 0.00 3.16
433 440 6.701400 CACACGTATGTCATTTATCAGGATCA 59.299 38.462 0.00 0.00 36.72 2.92
451 458 5.214702 TGGAATTGTTTCGTTCCACACGTA 61.215 41.667 2.88 0.00 46.59 3.57
474 481 1.616159 CCATCCAAAAACGTCAGGGT 58.384 50.000 0.00 0.00 0.00 4.34
515 545 3.865011 TGCAAGCAAACAGAAAGTTGA 57.135 38.095 0.00 0.00 41.19 3.18
593 623 5.865552 TGGCACGAAGTAACACTATTCTTAC 59.134 40.000 0.00 0.00 41.61 2.34
595 625 4.689345 GTGGCACGAAGTAACACTATTCTT 59.311 41.667 0.00 0.00 41.61 2.52
601 631 2.143122 CATGTGGCACGAAGTAACACT 58.857 47.619 13.77 0.00 41.61 3.55
627 657 5.389859 TTTCCAAATGATAAGCACCACAG 57.610 39.130 0.00 0.00 0.00 3.66
698 728 5.858581 CACCGAATTCAGTTTTGGATTCTTC 59.141 40.000 6.22 0.00 44.11 2.87
777 2466 1.561542 GGAACATGGGTCATCTCCAGT 59.438 52.381 0.00 0.00 37.75 4.00
778 2467 1.133976 GGGAACATGGGTCATCTCCAG 60.134 57.143 0.00 0.00 37.75 3.86
1280 2970 3.049674 CGTTCATGGTGTGCGGCT 61.050 61.111 0.00 0.00 0.00 5.52
1428 3118 8.650490 TGCATAATTGAGTTATAGGAGATGTGA 58.350 33.333 0.00 0.00 31.78 3.58
1901 3591 3.878667 GCCTGGCCGCCTATTCCT 61.879 66.667 11.61 0.00 0.00 3.36
2129 3819 2.128771 AGCGACTTACTACCGGGTAA 57.871 50.000 6.32 4.66 0.00 2.85
2452 4142 2.423538 CAGGTAAGCATAGTTTGGGTGC 59.576 50.000 0.00 0.00 39.10 5.01
2746 4436 1.270907 GAGAAGCCTCTTCACCAGGA 58.729 55.000 8.98 0.00 36.50 3.86
2918 4608 5.215160 CCTTGTGCTTTCTGTTTGATACAC 58.785 41.667 0.00 0.00 32.10 2.90
2972 4662 6.488006 ACACTTGAAAGATATGCAGACAAACT 59.512 34.615 0.00 0.00 0.00 2.66
3073 4763 3.885724 TCGTCAATTGTGAGCCTCATA 57.114 42.857 5.13 0.00 33.27 2.15
3448 5138 1.075600 GAGTGGGGAGGGAGAGAGG 60.076 68.421 0.00 0.00 0.00 3.69
3673 5363 3.380004 TGGAAATGTCAAACCTCACACAC 59.620 43.478 0.00 0.00 0.00 3.82
3751 5441 6.512253 GCTTCATTTCTTTCCTTGCAAAAAGG 60.512 38.462 18.86 9.70 38.78 3.11
3791 5481 9.762933 ACAAGTTAGTTTTTGCAAACATGATAT 57.237 25.926 12.39 0.00 44.32 1.63
3921 5611 1.542547 CGTTCTAACCACCAACTGGCT 60.543 52.381 0.00 0.00 45.32 4.75
4210 5900 5.123227 CCCTGAAGACACACAGTAAGAAAA 58.877 41.667 0.00 0.00 32.93 2.29
4285 5975 1.517257 CTCTTCTGCCAGCGTACGG 60.517 63.158 18.39 1.04 0.00 4.02
4388 6078 8.144478 AGAAAAGGAAGGAAAGCAGTTTAAATC 58.856 33.333 0.00 0.00 0.00 2.17
4467 6157 7.831690 TGAAATCTAACAACACATGGGCTATAA 59.168 33.333 0.00 0.00 0.00 0.98
4578 6300 2.295472 CTGAGAGCTCCCTTCCTGCG 62.295 65.000 10.93 0.00 0.00 5.18
4972 6694 5.395325 AATATCGTTTCTGATTGCACTCG 57.605 39.130 0.00 0.00 0.00 4.18
4992 6714 5.774690 TGAAACCAAACCTCAGCTATCAAAT 59.225 36.000 0.00 0.00 0.00 2.32
4993 6715 5.136828 TGAAACCAAACCTCAGCTATCAAA 58.863 37.500 0.00 0.00 0.00 2.69
4995 6717 4.365514 TGAAACCAAACCTCAGCTATCA 57.634 40.909 0.00 0.00 0.00 2.15
5379 7101 4.442073 CACTAAGCAACACTGTTGAAATGC 59.558 41.667 23.49 9.98 33.46 3.56
5414 7395 5.294060 ACAACCACAAATCAAGAACAAATGC 59.706 36.000 0.00 0.00 0.00 3.56
5449 7430 9.393249 GTGAAATCACTAATTCATTTTTCACGA 57.607 29.630 6.30 0.00 40.55 4.35
5541 7522 5.653507 TCATAAATGACTGCAAAATGGCTC 58.346 37.500 0.00 0.00 34.04 4.70
5566 7924 3.859961 CAGCTGTGACTAACGAATACCTG 59.140 47.826 5.25 0.00 0.00 4.00
5668 8031 0.245539 CCAAAGTGCTGCCTCCATTG 59.754 55.000 0.00 0.10 0.00 2.82
5745 8108 1.896465 AGAGTAGCTTCACTGGGTGAC 59.104 52.381 0.00 0.00 42.60 3.67
5753 8116 5.895928 TGACATCACATAGAGTAGCTTCAC 58.104 41.667 0.00 0.00 0.00 3.18
5808 8172 6.767524 TTGTAGTGAAGGTTTCATGTGTTT 57.232 33.333 0.00 0.00 42.47 2.83
5823 8187 7.880713 TCTGCTGGTATTGTTAAATTGTAGTGA 59.119 33.333 0.00 0.00 0.00 3.41
5831 8197 8.121305 TCAAATGTCTGCTGGTATTGTTAAAT 57.879 30.769 0.00 0.00 0.00 1.40
5834 8200 7.392953 TGATTCAAATGTCTGCTGGTATTGTTA 59.607 33.333 0.00 0.00 0.00 2.41
5848 8214 8.894409 TTGTTGATATCGTTGATTCAAATGTC 57.106 30.769 0.00 1.40 30.51 3.06
5849 8215 7.485913 GCTTGTTGATATCGTTGATTCAAATGT 59.514 33.333 0.00 0.00 30.51 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.