Multiple sequence alignment - TraesCS3A01G194900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G194900 chr3A 100.000 2662 0 0 845 3506 276474721 276477382 0.000000e+00 4916.0
1 TraesCS3A01G194900 chr3A 91.919 1584 121 7 1925 3506 102927880 102929458 0.000000e+00 2209.0
2 TraesCS3A01G194900 chr3A 100.000 462 0 0 1 462 276473877 276474338 0.000000e+00 854.0
3 TraesCS3A01G194900 chr3A 94.017 234 13 1 1700 1932 335272386 335272619 1.550000e-93 353.0
4 TraesCS3A01G194900 chr3A 87.085 271 28 2 845 1115 335272051 335272314 2.050000e-77 300.0
5 TraesCS3A01G194900 chr3A 89.474 95 9 1 3411 3505 476312130 476312037 6.150000e-23 119.0
6 TraesCS3A01G194900 chr2D 96.539 2687 64 8 845 3506 286019034 286021716 0.000000e+00 4420.0
7 TraesCS3A01G194900 chr2D 83.851 161 19 6 303 462 286018765 286018919 2.820000e-31 147.0
8 TraesCS3A01G194900 chr1B 94.310 2689 103 13 845 3506 534909887 534907222 0.000000e+00 4072.0
9 TraesCS3A01G194900 chr1B 94.054 2691 107 18 845 3506 534930991 534928325 0.000000e+00 4034.0
10 TraesCS3A01G194900 chr1B 85.139 323 26 6 930 1231 55531285 55531606 9.450000e-81 311.0
11 TraesCS3A01G194900 chr1B 87.192 203 16 5 1752 1946 534929793 534929593 4.550000e-54 222.0
12 TraesCS3A01G194900 chr1B 86.700 203 18 4 1752 1946 534908690 534908489 2.120000e-52 217.0
13 TraesCS3A01G194900 chr1B 83.401 247 22 10 215 454 534944750 534944516 9.860000e-51 211.0
14 TraesCS3A01G194900 chr1B 93.860 114 7 0 1118 1231 640703039 640702926 4.650000e-39 172.0
15 TraesCS3A01G194900 chr1B 97.183 71 2 0 887 957 634259712 634259642 1.710000e-23 121.0
16 TraesCS3A01G194900 chr1B 87.500 56 7 0 201 256 24106987 24106932 8.120000e-07 65.8
17 TraesCS3A01G194900 chr5B 92.357 1701 111 12 1813 3506 435173949 435175637 0.000000e+00 2403.0
18 TraesCS3A01G194900 chr5B 94.366 71 4 0 887 957 246281644 246281714 3.700000e-20 110.0
19 TraesCS3A01G194900 chr6A 92.992 1584 105 6 1925 3506 616772710 616771131 0.000000e+00 2305.0
20 TraesCS3A01G194900 chr6A 88.360 189 15 2 1752 1933 616772611 616772423 1.640000e-53 220.0
21 TraesCS3A01G194900 chr6A 85.897 78 10 1 201 278 453558885 453558961 8.070000e-12 82.4
22 TraesCS3A01G194900 chr6A 91.489 47 4 0 201 247 551859214 551859168 8.120000e-07 65.8
23 TraesCS3A01G194900 chr1D 92.853 1553 103 8 1925 3474 76944199 76945746 0.000000e+00 2246.0
24 TraesCS3A01G194900 chr1D 87.831 189 16 2 1752 1933 76944298 76944486 7.620000e-52 215.0
25 TraesCS3A01G194900 chr7A 92.220 1581 112 8 1928 3506 115409062 115407491 0.000000e+00 2228.0
26 TraesCS3A01G194900 chr7A 91.740 1598 124 8 1912 3506 657555590 657557182 0.000000e+00 2213.0
27 TraesCS3A01G194900 chr3D 91.856 1584 121 8 1925 3506 140061573 140059996 0.000000e+00 2204.0
28 TraesCS3A01G194900 chr2B 89.301 1589 141 17 1925 3505 151326097 151327664 0.000000e+00 1965.0
29 TraesCS3A01G194900 chr2B 83.333 408 42 7 845 1231 633308426 633308024 1.550000e-93 353.0
30 TraesCS3A01G194900 chr4D 81.908 304 17 9 1548 1830 508590440 508590154 4.550000e-54 222.0
31 TraesCS3A01G194900 chr7D 87.302 189 17 2 1752 1933 310864389 310864577 3.550000e-50 209.0
32 TraesCS3A01G194900 chr7D 86.420 81 9 2 88 166 565663815 565663895 1.730000e-13 87.9
33 TraesCS3A01G194900 chrUn 92.623 122 6 1 1113 1231 467270005 467270126 4.650000e-39 172.0
34 TraesCS3A01G194900 chrUn 93.548 62 3 1 120 180 314945206 314945267 1.340000e-14 91.6
35 TraesCS3A01G194900 chrUn 93.548 62 3 1 120 180 326129588 326129527 1.340000e-14 91.6
36 TraesCS3A01G194900 chrUn 93.548 62 3 1 120 180 406869103 406869164 1.340000e-14 91.6
37 TraesCS3A01G194900 chr6D 96.923 65 2 0 845 909 16115451 16115387 3.700000e-20 110.0
38 TraesCS3A01G194900 chr2A 84.158 101 14 2 210 308 41169989 41169889 2.880000e-16 97.1
39 TraesCS3A01G194900 chr2A 87.342 79 8 2 88 164 645905670 645905592 4.820000e-14 89.8
40 TraesCS3A01G194900 chr4A 87.654 81 8 2 88 166 601210174 601210254 3.730000e-15 93.5
41 TraesCS3A01G194900 chr4A 86.441 59 8 0 198 256 558648340 558648282 8.120000e-07 65.8
42 TraesCS3A01G194900 chr4B 93.548 62 3 1 120 180 618179170 618179231 1.340000e-14 91.6
43 TraesCS3A01G194900 chr1A 93.548 62 3 1 120 180 518656104 518656165 1.340000e-14 91.6
44 TraesCS3A01G194900 chr1A 84.507 71 11 0 201 271 561060570 561060500 1.750000e-08 71.3
45 TraesCS3A01G194900 chr5A 86.585 82 9 2 87 166 616871590 616871671 4.820000e-14 89.8
46 TraesCS3A01G194900 chr3B 89.655 58 6 0 199 256 60825734 60825791 1.350000e-09 75.0
47 TraesCS3A01G194900 chr7B 83.117 77 11 2 201 276 590125002 590125077 6.280000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G194900 chr3A 276473877 276477382 3505 False 2885.0 4916 100.000 1 3506 2 chr3A.!!$F2 3505
1 TraesCS3A01G194900 chr3A 102927880 102929458 1578 False 2209.0 2209 91.919 1925 3506 1 chr3A.!!$F1 1581
2 TraesCS3A01G194900 chr3A 335272051 335272619 568 False 326.5 353 90.551 845 1932 2 chr3A.!!$F3 1087
3 TraesCS3A01G194900 chr2D 286018765 286021716 2951 False 2283.5 4420 90.195 303 3506 2 chr2D.!!$F1 3203
4 TraesCS3A01G194900 chr1B 534907222 534909887 2665 True 2144.5 4072 90.505 845 3506 2 chr1B.!!$R5 2661
5 TraesCS3A01G194900 chr1B 534928325 534930991 2666 True 2128.0 4034 90.623 845 3506 2 chr1B.!!$R6 2661
6 TraesCS3A01G194900 chr5B 435173949 435175637 1688 False 2403.0 2403 92.357 1813 3506 1 chr5B.!!$F2 1693
7 TraesCS3A01G194900 chr6A 616771131 616772710 1579 True 1262.5 2305 90.676 1752 3506 2 chr6A.!!$R2 1754
8 TraesCS3A01G194900 chr1D 76944199 76945746 1547 False 1230.5 2246 90.342 1752 3474 2 chr1D.!!$F1 1722
9 TraesCS3A01G194900 chr7A 115407491 115409062 1571 True 2228.0 2228 92.220 1928 3506 1 chr7A.!!$R1 1578
10 TraesCS3A01G194900 chr7A 657555590 657557182 1592 False 2213.0 2213 91.740 1912 3506 1 chr7A.!!$F1 1594
11 TraesCS3A01G194900 chr3D 140059996 140061573 1577 True 2204.0 2204 91.856 1925 3506 1 chr3D.!!$R1 1581
12 TraesCS3A01G194900 chr2B 151326097 151327664 1567 False 1965.0 1965 89.301 1925 3505 1 chr2B.!!$F1 1580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.035598 TCTCCGCCGGTCAATTTTCA 59.964 50.0 1.63 0.0 0.00 2.69 F
330 331 0.111266 CCGAACGACGAGCAAAACTG 60.111 55.0 0.00 0.0 45.77 3.16 F
1380 1424 0.182537 TGTTGTGGCTGGTAAGTGCT 59.817 50.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1648 0.976641 TCAGGAAAGGTGTCGCATCT 59.023 50.0 0.0 0.0 0.00 2.90 R
2224 2293 1.048724 CCCAGAGCCCTCCGACATAA 61.049 60.0 0.0 0.0 0.00 1.90 R
2587 2658 0.329596 AGAGGAATGGAACCTGGTGC 59.670 55.0 0.0 0.0 37.93 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.443323 TGAAAATAAGATGGAAAGAATCGTACA 57.557 29.630 0.00 0.00 0.00 2.90
36 37 7.969536 AGATGGAAAGAATCGTACATAATGG 57.030 36.000 0.00 0.00 0.00 3.16
37 38 6.936900 AGATGGAAAGAATCGTACATAATGGG 59.063 38.462 0.00 0.00 0.00 4.00
38 39 5.373222 TGGAAAGAATCGTACATAATGGGG 58.627 41.667 0.00 0.00 0.00 4.96
39 40 5.131308 TGGAAAGAATCGTACATAATGGGGA 59.869 40.000 0.00 0.00 0.00 4.81
40 41 6.059484 GGAAAGAATCGTACATAATGGGGAA 58.941 40.000 0.00 0.00 0.00 3.97
41 42 6.544564 GGAAAGAATCGTACATAATGGGGAAA 59.455 38.462 0.00 0.00 0.00 3.13
42 43 7.230712 GGAAAGAATCGTACATAATGGGGAAAT 59.769 37.037 0.00 0.00 0.00 2.17
43 44 9.280174 GAAAGAATCGTACATAATGGGGAAATA 57.720 33.333 0.00 0.00 0.00 1.40
44 45 8.617290 AAGAATCGTACATAATGGGGAAATAC 57.383 34.615 0.00 0.00 0.00 1.89
45 46 7.166167 AGAATCGTACATAATGGGGAAATACC 58.834 38.462 0.00 0.00 38.08 2.73
46 47 6.697641 ATCGTACATAATGGGGAAATACCT 57.302 37.500 0.00 0.00 38.98 3.08
47 48 5.860611 TCGTACATAATGGGGAAATACCTG 58.139 41.667 0.00 0.00 38.98 4.00
48 49 5.367352 TCGTACATAATGGGGAAATACCTGT 59.633 40.000 0.00 0.00 38.98 4.00
49 50 5.468746 CGTACATAATGGGGAAATACCTGTG 59.531 44.000 0.00 0.00 38.98 3.66
50 51 4.215109 ACATAATGGGGAAATACCTGTGC 58.785 43.478 0.00 0.00 38.98 4.57
51 52 2.159179 AATGGGGAAATACCTGTGCC 57.841 50.000 0.00 0.00 38.98 5.01
52 53 1.006813 ATGGGGAAATACCTGTGCCA 58.993 50.000 0.00 0.00 38.98 4.92
53 54 0.780637 TGGGGAAATACCTGTGCCAA 59.219 50.000 0.00 0.00 38.98 4.52
54 55 1.272425 TGGGGAAATACCTGTGCCAAG 60.272 52.381 0.00 0.00 38.98 3.61
55 56 1.005450 GGGGAAATACCTGTGCCAAGA 59.995 52.381 0.00 0.00 38.98 3.02
56 57 2.358195 GGGGAAATACCTGTGCCAAGAT 60.358 50.000 0.00 0.00 38.98 2.40
57 58 2.689983 GGGAAATACCTGTGCCAAGATG 59.310 50.000 0.00 0.00 38.98 2.90
58 59 2.689983 GGAAATACCTGTGCCAAGATGG 59.310 50.000 0.00 0.00 36.73 3.51
59 60 3.620488 GAAATACCTGTGCCAAGATGGA 58.380 45.455 0.00 0.00 40.96 3.41
60 61 3.737559 AATACCTGTGCCAAGATGGAA 57.262 42.857 0.00 0.00 40.96 3.53
61 62 3.737559 ATACCTGTGCCAAGATGGAAA 57.262 42.857 0.00 0.00 40.96 3.13
62 63 2.380064 ACCTGTGCCAAGATGGAAAA 57.620 45.000 0.00 0.00 40.96 2.29
63 64 2.676748 ACCTGTGCCAAGATGGAAAAA 58.323 42.857 0.00 0.00 40.96 1.94
64 65 2.365293 ACCTGTGCCAAGATGGAAAAAC 59.635 45.455 0.00 0.00 40.96 2.43
65 66 2.364970 CCTGTGCCAAGATGGAAAAACA 59.635 45.455 0.00 0.00 40.96 2.83
66 67 3.181467 CCTGTGCCAAGATGGAAAAACAA 60.181 43.478 0.00 0.00 40.96 2.83
67 68 4.053295 CTGTGCCAAGATGGAAAAACAAG 58.947 43.478 0.00 0.00 40.96 3.16
68 69 3.703556 TGTGCCAAGATGGAAAAACAAGA 59.296 39.130 0.00 0.00 40.96 3.02
69 70 4.202141 TGTGCCAAGATGGAAAAACAAGAG 60.202 41.667 0.00 0.00 40.96 2.85
70 71 4.037923 GTGCCAAGATGGAAAAACAAGAGA 59.962 41.667 0.00 0.00 40.96 3.10
71 72 4.648762 TGCCAAGATGGAAAAACAAGAGAA 59.351 37.500 0.00 0.00 40.96 2.87
72 73 5.128499 TGCCAAGATGGAAAAACAAGAGAAA 59.872 36.000 0.00 0.00 40.96 2.52
73 74 5.693555 GCCAAGATGGAAAAACAAGAGAAAG 59.306 40.000 0.00 0.00 40.96 2.62
74 75 6.683861 GCCAAGATGGAAAAACAAGAGAAAGT 60.684 38.462 0.00 0.00 40.96 2.66
75 76 7.267857 CCAAGATGGAAAAACAAGAGAAAGTT 58.732 34.615 0.00 0.00 40.96 2.66
76 77 7.765819 CCAAGATGGAAAAACAAGAGAAAGTTT 59.234 33.333 0.00 0.00 40.96 2.66
77 78 9.154847 CAAGATGGAAAAACAAGAGAAAGTTTT 57.845 29.630 0.00 0.00 46.53 2.43
78 79 8.707938 AGATGGAAAAACAAGAGAAAGTTTTG 57.292 30.769 4.31 0.00 44.54 2.44
79 80 8.314021 AGATGGAAAAACAAGAGAAAGTTTTGT 58.686 29.630 4.31 0.00 44.54 2.83
80 81 7.650834 TGGAAAAACAAGAGAAAGTTTTGTG 57.349 32.000 4.31 0.00 44.54 3.33
81 82 6.648725 TGGAAAAACAAGAGAAAGTTTTGTGG 59.351 34.615 4.31 0.00 44.54 4.17
82 83 6.092122 GGAAAAACAAGAGAAAGTTTTGTGGG 59.908 38.462 4.31 0.00 44.54 4.61
83 84 5.993748 AAACAAGAGAAAGTTTTGTGGGA 57.006 34.783 0.00 0.00 34.51 4.37
84 85 5.993748 AACAAGAGAAAGTTTTGTGGGAA 57.006 34.783 0.00 0.00 35.39 3.97
85 86 6.544928 AACAAGAGAAAGTTTTGTGGGAAT 57.455 33.333 0.00 0.00 35.39 3.01
86 87 6.544928 ACAAGAGAAAGTTTTGTGGGAATT 57.455 33.333 0.00 0.00 34.04 2.17
87 88 6.340522 ACAAGAGAAAGTTTTGTGGGAATTG 58.659 36.000 0.00 0.00 34.04 2.32
88 89 6.154363 ACAAGAGAAAGTTTTGTGGGAATTGA 59.846 34.615 0.00 0.00 34.04 2.57
89 90 6.983906 AGAGAAAGTTTTGTGGGAATTGAT 57.016 33.333 0.00 0.00 0.00 2.57
90 91 7.365497 AGAGAAAGTTTTGTGGGAATTGATT 57.635 32.000 0.00 0.00 0.00 2.57
91 92 7.795047 AGAGAAAGTTTTGTGGGAATTGATTT 58.205 30.769 0.00 0.00 0.00 2.17
92 93 7.712205 AGAGAAAGTTTTGTGGGAATTGATTTG 59.288 33.333 0.00 0.00 0.00 2.32
93 94 6.767423 AGAAAGTTTTGTGGGAATTGATTTGG 59.233 34.615 0.00 0.00 0.00 3.28
94 95 5.628797 AGTTTTGTGGGAATTGATTTGGT 57.371 34.783 0.00 0.00 0.00 3.67
95 96 6.000246 AGTTTTGTGGGAATTGATTTGGTT 58.000 33.333 0.00 0.00 0.00 3.67
96 97 6.422333 AGTTTTGTGGGAATTGATTTGGTTT 58.578 32.000 0.00 0.00 0.00 3.27
97 98 6.889177 AGTTTTGTGGGAATTGATTTGGTTTT 59.111 30.769 0.00 0.00 0.00 2.43
98 99 7.395772 AGTTTTGTGGGAATTGATTTGGTTTTT 59.604 29.630 0.00 0.00 0.00 1.94
99 100 8.678199 GTTTTGTGGGAATTGATTTGGTTTTTA 58.322 29.630 0.00 0.00 0.00 1.52
100 101 8.807948 TTTGTGGGAATTGATTTGGTTTTTAA 57.192 26.923 0.00 0.00 0.00 1.52
101 102 8.986929 TTGTGGGAATTGATTTGGTTTTTAAT 57.013 26.923 0.00 0.00 0.00 1.40
102 103 8.388484 TGTGGGAATTGATTTGGTTTTTAATG 57.612 30.769 0.00 0.00 0.00 1.90
103 104 7.446625 TGTGGGAATTGATTTGGTTTTTAATGG 59.553 33.333 0.00 0.00 0.00 3.16
104 105 6.944862 TGGGAATTGATTTGGTTTTTAATGGG 59.055 34.615 0.00 0.00 0.00 4.00
105 106 7.171653 GGGAATTGATTTGGTTTTTAATGGGA 58.828 34.615 0.00 0.00 0.00 4.37
106 107 7.336679 GGGAATTGATTTGGTTTTTAATGGGAG 59.663 37.037 0.00 0.00 0.00 4.30
107 108 7.336679 GGAATTGATTTGGTTTTTAATGGGAGG 59.663 37.037 0.00 0.00 0.00 4.30
108 109 5.753721 TGATTTGGTTTTTAATGGGAGGG 57.246 39.130 0.00 0.00 0.00 4.30
109 110 4.534103 TGATTTGGTTTTTAATGGGAGGGG 59.466 41.667 0.00 0.00 0.00 4.79
110 111 1.945580 TGGTTTTTAATGGGAGGGGC 58.054 50.000 0.00 0.00 0.00 5.80
111 112 0.821517 GGTTTTTAATGGGAGGGGCG 59.178 55.000 0.00 0.00 0.00 6.13
112 113 0.821517 GTTTTTAATGGGAGGGGCGG 59.178 55.000 0.00 0.00 0.00 6.13
113 114 0.410270 TTTTTAATGGGAGGGGCGGT 59.590 50.000 0.00 0.00 0.00 5.68
114 115 0.323908 TTTTAATGGGAGGGGCGGTG 60.324 55.000 0.00 0.00 0.00 4.94
115 116 1.208844 TTTAATGGGAGGGGCGGTGA 61.209 55.000 0.00 0.00 0.00 4.02
116 117 1.632018 TTAATGGGAGGGGCGGTGAG 61.632 60.000 0.00 0.00 0.00 3.51
117 118 2.833151 TAATGGGAGGGGCGGTGAGT 62.833 60.000 0.00 0.00 0.00 3.41
121 122 4.436998 GAGGGGCGGTGAGTCGTG 62.437 72.222 0.00 0.00 0.00 4.35
122 123 4.988716 AGGGGCGGTGAGTCGTGA 62.989 66.667 0.00 0.00 0.00 4.35
123 124 4.436998 GGGGCGGTGAGTCGTGAG 62.437 72.222 0.00 0.00 0.00 3.51
124 125 3.371063 GGGCGGTGAGTCGTGAGA 61.371 66.667 0.00 0.00 38.16 3.27
140 141 4.942765 CGTGAGACGAAAATAAACCAGAC 58.057 43.478 0.00 0.00 46.05 3.51
141 142 4.432503 CGTGAGACGAAAATAAACCAGACG 60.433 45.833 0.00 0.00 46.05 4.18
142 143 4.682860 GTGAGACGAAAATAAACCAGACGA 59.317 41.667 0.00 0.00 0.00 4.20
143 144 5.176223 GTGAGACGAAAATAAACCAGACGAA 59.824 40.000 0.00 0.00 0.00 3.85
144 145 5.754406 TGAGACGAAAATAAACCAGACGAAA 59.246 36.000 0.00 0.00 0.00 3.46
145 146 6.258287 TGAGACGAAAATAAACCAGACGAAAA 59.742 34.615 0.00 0.00 0.00 2.29
146 147 7.041644 TGAGACGAAAATAAACCAGACGAAAAT 60.042 33.333 0.00 0.00 0.00 1.82
147 148 8.314143 AGACGAAAATAAACCAGACGAAAATA 57.686 30.769 0.00 0.00 0.00 1.40
148 149 8.776470 AGACGAAAATAAACCAGACGAAAATAA 58.224 29.630 0.00 0.00 0.00 1.40
149 150 9.384682 GACGAAAATAAACCAGACGAAAATAAA 57.615 29.630 0.00 0.00 0.00 1.40
150 151 9.172820 ACGAAAATAAACCAGACGAAAATAAAC 57.827 29.630 0.00 0.00 0.00 2.01
151 152 8.632551 CGAAAATAAACCAGACGAAAATAAACC 58.367 33.333 0.00 0.00 0.00 3.27
152 153 8.821147 AAAATAAACCAGACGAAAATAAACCC 57.179 30.769 0.00 0.00 0.00 4.11
153 154 4.492791 AAACCAGACGAAAATAAACCCG 57.507 40.909 0.00 0.00 0.00 5.28
154 155 3.405823 ACCAGACGAAAATAAACCCGA 57.594 42.857 0.00 0.00 0.00 5.14
155 156 3.069289 ACCAGACGAAAATAAACCCGAC 58.931 45.455 0.00 0.00 0.00 4.79
156 157 2.093152 CCAGACGAAAATAAACCCGACG 59.907 50.000 0.00 0.00 0.00 5.12
157 158 2.988493 CAGACGAAAATAAACCCGACGA 59.012 45.455 0.00 0.00 0.00 4.20
158 159 3.429543 CAGACGAAAATAAACCCGACGAA 59.570 43.478 0.00 0.00 0.00 3.85
159 160 4.057432 AGACGAAAATAAACCCGACGAAA 58.943 39.130 0.00 0.00 0.00 3.46
160 161 4.511082 AGACGAAAATAAACCCGACGAAAA 59.489 37.500 0.00 0.00 0.00 2.29
161 162 5.007528 AGACGAAAATAAACCCGACGAAAAA 59.992 36.000 0.00 0.00 0.00 1.94
188 189 1.130561 GGACGCAATCCTGTTTACTGC 59.869 52.381 0.00 0.00 45.22 4.40
189 190 2.076863 GACGCAATCCTGTTTACTGCT 58.923 47.619 0.00 0.00 0.00 4.24
190 191 2.076863 ACGCAATCCTGTTTACTGCTC 58.923 47.619 0.00 0.00 0.00 4.26
191 192 1.398390 CGCAATCCTGTTTACTGCTCC 59.602 52.381 0.00 0.00 0.00 4.70
192 193 2.436417 GCAATCCTGTTTACTGCTCCA 58.564 47.619 0.00 0.00 0.00 3.86
193 194 3.019564 GCAATCCTGTTTACTGCTCCAT 58.980 45.455 0.00 0.00 0.00 3.41
194 195 3.445096 GCAATCCTGTTTACTGCTCCATT 59.555 43.478 0.00 0.00 0.00 3.16
195 196 4.640201 GCAATCCTGTTTACTGCTCCATTA 59.360 41.667 0.00 0.00 0.00 1.90
196 197 5.220931 GCAATCCTGTTTACTGCTCCATTAG 60.221 44.000 0.00 0.00 0.00 1.73
197 198 5.957771 ATCCTGTTTACTGCTCCATTAGA 57.042 39.130 0.00 0.00 0.00 2.10
198 199 5.755409 TCCTGTTTACTGCTCCATTAGAA 57.245 39.130 0.00 0.00 0.00 2.10
199 200 5.734720 TCCTGTTTACTGCTCCATTAGAAG 58.265 41.667 0.00 0.00 36.83 2.85
200 201 5.248477 TCCTGTTTACTGCTCCATTAGAAGT 59.752 40.000 0.00 0.00 46.72 3.01
201 202 5.582665 CCTGTTTACTGCTCCATTAGAAGTC 59.417 44.000 0.00 0.00 40.46 3.01
202 203 6.360370 TGTTTACTGCTCCATTAGAAGTCT 57.640 37.500 0.00 0.00 40.46 3.24
203 204 7.363880 CCTGTTTACTGCTCCATTAGAAGTCTA 60.364 40.741 0.00 0.00 40.46 2.59
204 205 8.079211 TGTTTACTGCTCCATTAGAAGTCTAT 57.921 34.615 0.00 0.00 40.46 1.98
205 206 9.197306 TGTTTACTGCTCCATTAGAAGTCTATA 57.803 33.333 0.00 0.00 40.46 1.31
206 207 9.685828 GTTTACTGCTCCATTAGAAGTCTATAG 57.314 37.037 0.00 0.00 40.46 1.31
207 208 8.998277 TTACTGCTCCATTAGAAGTCTATAGT 57.002 34.615 0.00 0.00 40.46 2.12
208 209 7.519032 ACTGCTCCATTAGAAGTCTATAGTC 57.481 40.000 0.00 0.00 40.46 2.59
209 210 7.294584 ACTGCTCCATTAGAAGTCTATAGTCT 58.705 38.462 0.00 0.00 40.46 3.24
210 211 7.782644 ACTGCTCCATTAGAAGTCTATAGTCTT 59.217 37.037 11.39 11.39 40.46 3.01
211 212 9.290988 CTGCTCCATTAGAAGTCTATAGTCTTA 57.709 37.037 11.52 0.00 0.00 2.10
212 213 9.642343 TGCTCCATTAGAAGTCTATAGTCTTAA 57.358 33.333 11.52 5.16 0.00 1.85
215 216 9.589461 TCCATTAGAAGTCTATAGTCTTAAGGG 57.411 37.037 11.52 13.31 0.00 3.95
216 217 9.589461 CCATTAGAAGTCTATAGTCTTAAGGGA 57.411 37.037 15.17 3.33 0.00 4.20
218 219 8.694581 TTAGAAGTCTATAGTCTTAAGGGAGC 57.305 38.462 11.52 0.00 0.00 4.70
219 220 6.674573 AGAAGTCTATAGTCTTAAGGGAGCA 58.325 40.000 11.52 0.00 0.00 4.26
220 221 6.775629 AGAAGTCTATAGTCTTAAGGGAGCAG 59.224 42.308 11.52 0.00 0.00 4.24
221 222 6.020881 AGTCTATAGTCTTAAGGGAGCAGT 57.979 41.667 1.85 0.00 0.00 4.40
222 223 6.436890 AGTCTATAGTCTTAAGGGAGCAGTT 58.563 40.000 1.85 0.00 0.00 3.16
223 224 6.322712 AGTCTATAGTCTTAAGGGAGCAGTTG 59.677 42.308 1.85 0.00 0.00 3.16
224 225 6.321690 GTCTATAGTCTTAAGGGAGCAGTTGA 59.678 42.308 1.85 0.00 0.00 3.18
225 226 7.014808 GTCTATAGTCTTAAGGGAGCAGTTGAT 59.985 40.741 1.85 0.00 0.00 2.57
226 227 8.225416 TCTATAGTCTTAAGGGAGCAGTTGATA 58.775 37.037 1.85 0.00 0.00 2.15
227 228 5.606348 AGTCTTAAGGGAGCAGTTGATAG 57.394 43.478 1.85 0.00 0.00 2.08
228 229 5.026790 AGTCTTAAGGGAGCAGTTGATAGT 58.973 41.667 1.85 0.00 0.00 2.12
229 230 5.128008 AGTCTTAAGGGAGCAGTTGATAGTC 59.872 44.000 1.85 0.00 0.00 2.59
230 231 5.128008 GTCTTAAGGGAGCAGTTGATAGTCT 59.872 44.000 1.85 0.00 0.00 3.24
231 232 5.361285 TCTTAAGGGAGCAGTTGATAGTCTC 59.639 44.000 1.85 0.00 0.00 3.36
232 233 2.393646 AGGGAGCAGTTGATAGTCTCC 58.606 52.381 0.00 0.00 41.87 3.71
233 234 1.067821 GGGAGCAGTTGATAGTCTCCG 59.932 57.143 0.00 0.00 43.14 4.63
234 235 1.537135 GGAGCAGTTGATAGTCTCCGC 60.537 57.143 0.00 0.00 34.67 5.54
235 236 0.461961 AGCAGTTGATAGTCTCCGCC 59.538 55.000 0.00 0.00 0.00 6.13
236 237 0.872021 GCAGTTGATAGTCTCCGCCG 60.872 60.000 0.00 0.00 0.00 6.46
237 238 0.249073 CAGTTGATAGTCTCCGCCGG 60.249 60.000 0.00 0.00 0.00 6.13
238 239 0.683504 AGTTGATAGTCTCCGCCGGT 60.684 55.000 1.63 0.00 0.00 5.28
239 240 0.248949 GTTGATAGTCTCCGCCGGTC 60.249 60.000 1.63 0.00 0.00 4.79
240 241 0.681887 TTGATAGTCTCCGCCGGTCA 60.682 55.000 1.63 0.00 0.00 4.02
241 242 0.681887 TGATAGTCTCCGCCGGTCAA 60.682 55.000 1.63 0.00 0.00 3.18
242 243 0.674534 GATAGTCTCCGCCGGTCAAT 59.325 55.000 1.63 0.00 0.00 2.57
243 244 1.068741 GATAGTCTCCGCCGGTCAATT 59.931 52.381 1.63 0.00 0.00 2.32
244 245 0.899720 TAGTCTCCGCCGGTCAATTT 59.100 50.000 1.63 0.00 0.00 1.82
245 246 0.036306 AGTCTCCGCCGGTCAATTTT 59.964 50.000 1.63 0.00 0.00 1.82
246 247 0.446616 GTCTCCGCCGGTCAATTTTC 59.553 55.000 1.63 0.00 0.00 2.29
247 248 0.035598 TCTCCGCCGGTCAATTTTCA 59.964 50.000 1.63 0.00 0.00 2.69
248 249 1.094785 CTCCGCCGGTCAATTTTCAT 58.905 50.000 1.63 0.00 0.00 2.57
249 250 1.064060 CTCCGCCGGTCAATTTTCATC 59.936 52.381 1.63 0.00 0.00 2.92
250 251 1.094785 CCGCCGGTCAATTTTCATCT 58.905 50.000 1.90 0.00 0.00 2.90
251 252 1.064060 CCGCCGGTCAATTTTCATCTC 59.936 52.381 1.90 0.00 0.00 2.75
252 253 1.737236 CGCCGGTCAATTTTCATCTCA 59.263 47.619 1.90 0.00 0.00 3.27
253 254 2.355756 CGCCGGTCAATTTTCATCTCAT 59.644 45.455 1.90 0.00 0.00 2.90
254 255 3.546815 CGCCGGTCAATTTTCATCTCATC 60.547 47.826 1.90 0.00 0.00 2.92
255 256 3.378112 GCCGGTCAATTTTCATCTCATCA 59.622 43.478 1.90 0.00 0.00 3.07
256 257 4.497006 GCCGGTCAATTTTCATCTCATCAG 60.497 45.833 1.90 0.00 0.00 2.90
257 258 4.877823 CCGGTCAATTTTCATCTCATCAGA 59.122 41.667 0.00 0.00 0.00 3.27
258 259 5.007430 CCGGTCAATTTTCATCTCATCAGAG 59.993 44.000 0.00 0.00 43.48 3.35
285 286 2.375014 TTTTTGTCCTCCCTTCCACC 57.625 50.000 0.00 0.00 0.00 4.61
286 287 1.529744 TTTTGTCCTCCCTTCCACCT 58.470 50.000 0.00 0.00 0.00 4.00
287 288 1.064825 TTTGTCCTCCCTTCCACCTC 58.935 55.000 0.00 0.00 0.00 3.85
288 289 0.840722 TTGTCCTCCCTTCCACCTCC 60.841 60.000 0.00 0.00 0.00 4.30
289 290 1.996187 GTCCTCCCTTCCACCTCCC 60.996 68.421 0.00 0.00 0.00 4.30
290 291 2.124996 CCTCCCTTCCACCTCCCA 59.875 66.667 0.00 0.00 0.00 4.37
291 292 2.301738 CCTCCCTTCCACCTCCCAC 61.302 68.421 0.00 0.00 0.00 4.61
292 293 1.229658 CTCCCTTCCACCTCCCACT 60.230 63.158 0.00 0.00 0.00 4.00
293 294 0.842467 CTCCCTTCCACCTCCCACTT 60.842 60.000 0.00 0.00 0.00 3.16
294 295 0.840722 TCCCTTCCACCTCCCACTTC 60.841 60.000 0.00 0.00 0.00 3.01
295 296 1.685820 CCTTCCACCTCCCACTTCC 59.314 63.158 0.00 0.00 0.00 3.46
296 297 1.133809 CCTTCCACCTCCCACTTCCA 61.134 60.000 0.00 0.00 0.00 3.53
297 298 0.326264 CTTCCACCTCCCACTTCCAG 59.674 60.000 0.00 0.00 0.00 3.86
298 299 0.401395 TTCCACCTCCCACTTCCAGT 60.401 55.000 0.00 0.00 0.00 4.00
299 300 1.127567 TCCACCTCCCACTTCCAGTG 61.128 60.000 0.00 0.00 45.53 3.66
315 316 1.196104 AGTGATTCCCCCGAACCGAA 61.196 55.000 0.00 0.00 0.00 4.30
316 317 1.022982 GTGATTCCCCCGAACCGAAC 61.023 60.000 0.00 0.00 0.00 3.95
317 318 1.812507 GATTCCCCCGAACCGAACG 60.813 63.158 0.00 0.00 0.00 3.95
318 319 2.229690 GATTCCCCCGAACCGAACGA 62.230 60.000 0.00 0.00 0.00 3.85
321 322 4.041917 CCCCGAACCGAACGACGA 62.042 66.667 0.00 0.00 45.77 4.20
322 323 2.503375 CCCGAACCGAACGACGAG 60.503 66.667 0.00 0.00 45.77 4.18
323 324 3.170585 CCGAACCGAACGACGAGC 61.171 66.667 0.00 0.00 45.77 5.03
328 329 0.302589 AACCGAACGACGAGCAAAAC 59.697 50.000 0.00 0.00 45.77 2.43
329 330 0.529119 ACCGAACGACGAGCAAAACT 60.529 50.000 0.00 0.00 45.77 2.66
330 331 0.111266 CCGAACGACGAGCAAAACTG 60.111 55.000 0.00 0.00 45.77 3.16
381 382 4.940463 TCCGGTCCATAGATAGAAAAACG 58.060 43.478 0.00 0.00 0.00 3.60
385 386 6.294899 CCGGTCCATAGATAGAAAAACGGATA 60.295 42.308 0.00 0.00 38.77 2.59
914 925 1.608336 CCCACACACTCCCGACCTA 60.608 63.158 0.00 0.00 0.00 3.08
957 969 1.074623 CTGCTCCTCCCTCCTCCAT 60.075 63.158 0.00 0.00 0.00 3.41
996 1008 1.925972 GTTCTCCCTTCCCCCTGCT 60.926 63.158 0.00 0.00 0.00 4.24
1071 1083 0.688087 ACCCGAGGAAGATGGAGTCC 60.688 60.000 0.73 0.73 0.00 3.85
1091 1103 0.399454 ATGGATGATGGGAAGGAGCG 59.601 55.000 0.00 0.00 0.00 5.03
1134 1177 2.481969 CGATGCTGCTACTGGTATGTGT 60.482 50.000 0.00 0.00 0.00 3.72
1150 1193 5.124457 GGTATGTGTTGTGCAATCTTCAGAT 59.876 40.000 0.00 0.00 36.07 2.90
1240 1284 6.262496 CAGAGATGTTGCTGAATGGAATACAT 59.738 38.462 0.00 0.00 43.07 2.29
1324 1368 8.629158 TGTGCTCAATAAATCCATGTTTATACC 58.371 33.333 2.67 0.00 34.16 2.73
1358 1402 5.304101 TCACTTGCATGTTTCCCTTGTATTT 59.696 36.000 1.83 0.00 0.00 1.40
1380 1424 0.182537 TGTTGTGGCTGGTAAGTGCT 59.817 50.000 0.00 0.00 0.00 4.40
1426 1470 4.260784 GCAGTGGAGTAAGTGAAAAGTGTG 60.261 45.833 0.00 0.00 0.00 3.82
1600 1645 4.809193 AGGATGCTTCTGATGTAGTAGGA 58.191 43.478 0.00 0.00 0.00 2.94
1603 1648 5.770663 GGATGCTTCTGATGTAGTAGGACTA 59.229 44.000 0.00 0.00 27.55 2.59
1627 1672 2.955660 TGCGACACCTTTCCTGAATTTT 59.044 40.909 0.00 0.00 0.00 1.82
1848 1914 6.068931 CCTTTTTCTTATGTTCACGTGTACG 58.931 40.000 18.67 2.43 46.33 3.67
1960 2027 1.341156 CGGGGAAGGAGCAGAGGAAT 61.341 60.000 0.00 0.00 0.00 3.01
2102 2170 6.512514 TTGTAGTTTCTGGTACCCCTTTTA 57.487 37.500 10.07 0.00 0.00 1.52
2224 2293 2.574955 GCTCTGAGTCGTGGTGGGT 61.575 63.158 6.53 0.00 0.00 4.51
2225 2294 2.050269 CTCTGAGTCGTGGTGGGTT 58.950 57.895 0.00 0.00 0.00 4.11
2386 2455 1.617850 CCAACTCTCACTCTGCTGTCT 59.382 52.381 0.00 0.00 0.00 3.41
2434 2503 2.557452 GGGGTGGATGGTTCTTTGATGT 60.557 50.000 0.00 0.00 0.00 3.06
2598 2669 1.358759 CAACAACGCACCAGGTTCC 59.641 57.895 0.00 0.00 0.00 3.62
2605 2676 1.026718 CGCACCAGGTTCCATTCCTC 61.027 60.000 0.00 0.00 32.37 3.71
2637 2710 5.305585 AGATCACACCACGTTCTATTTGTT 58.694 37.500 0.00 0.00 0.00 2.83
2646 2720 7.650104 CACCACGTTCTATTTGTTAACCATTTT 59.350 33.333 2.48 0.00 0.00 1.82
2702 2776 8.006298 ACAAAATCTGGTGTGAACAAAATCTA 57.994 30.769 0.00 0.00 0.00 1.98
2705 2795 9.883142 AAAATCTGGTGTGAACAAAATCTAAAA 57.117 25.926 0.00 0.00 0.00 1.52
2804 2898 3.611766 AGTATGTGTGTAGTGGCTTCC 57.388 47.619 0.00 0.00 0.00 3.46
2867 2963 4.712122 ACTTTGACCATCGTGTTTGTTT 57.288 36.364 0.00 0.00 0.00 2.83
2911 3014 6.149973 CAGTCAGCAAACTATTGGAAAGATGA 59.850 38.462 0.00 0.00 37.02 2.92
2935 3038 3.186613 GGTACCTCGTTTTTCTCAAGCTG 59.813 47.826 4.06 0.00 0.00 4.24
2996 3103 9.429359 CTTTCTATATCCGTCAGCTTCATAAAT 57.571 33.333 0.00 0.00 0.00 1.40
3260 3367 4.072131 TGTTCTTAGTTCCTGCATGGTTC 58.928 43.478 0.00 0.00 37.07 3.62
3442 3549 7.946207 TGCACCAACAACTTTATAGATTGAAA 58.054 30.769 0.00 0.00 0.00 2.69
3478 3585 7.730364 AGATGACTCAAATTTTAGAACGTGT 57.270 32.000 6.38 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.443323 TGTACGATTCTTTCCATCTTATTTTCA 57.557 29.630 0.00 0.00 0.00 2.69
10 11 9.489084 CCATTATGTACGATTCTTTCCATCTTA 57.511 33.333 0.00 0.00 0.00 2.10
11 12 7.445402 CCCATTATGTACGATTCTTTCCATCTT 59.555 37.037 0.00 0.00 0.00 2.40
12 13 6.936900 CCCATTATGTACGATTCTTTCCATCT 59.063 38.462 0.00 0.00 0.00 2.90
13 14 6.149474 CCCCATTATGTACGATTCTTTCCATC 59.851 42.308 0.00 0.00 0.00 3.51
14 15 6.003950 CCCCATTATGTACGATTCTTTCCAT 58.996 40.000 0.00 0.00 0.00 3.41
15 16 5.131308 TCCCCATTATGTACGATTCTTTCCA 59.869 40.000 0.00 0.00 0.00 3.53
16 17 5.617252 TCCCCATTATGTACGATTCTTTCC 58.383 41.667 0.00 0.00 0.00 3.13
17 18 7.562454 TTTCCCCATTATGTACGATTCTTTC 57.438 36.000 0.00 0.00 0.00 2.62
18 19 9.063615 GTATTTCCCCATTATGTACGATTCTTT 57.936 33.333 0.00 0.00 0.00 2.52
19 20 7.664318 GGTATTTCCCCATTATGTACGATTCTT 59.336 37.037 0.00 0.00 0.00 2.52
20 21 7.017254 AGGTATTTCCCCATTATGTACGATTCT 59.983 37.037 0.00 0.00 36.75 2.40
21 22 7.119262 CAGGTATTTCCCCATTATGTACGATTC 59.881 40.741 0.00 0.00 36.75 2.52
22 23 6.940298 CAGGTATTTCCCCATTATGTACGATT 59.060 38.462 0.00 0.00 36.75 3.34
23 24 6.043938 ACAGGTATTTCCCCATTATGTACGAT 59.956 38.462 0.00 0.00 36.75 3.73
24 25 5.367352 ACAGGTATTTCCCCATTATGTACGA 59.633 40.000 0.00 0.00 36.75 3.43
25 26 5.468746 CACAGGTATTTCCCCATTATGTACG 59.531 44.000 0.00 0.00 36.75 3.67
26 27 5.240844 GCACAGGTATTTCCCCATTATGTAC 59.759 44.000 0.00 0.00 36.75 2.90
27 28 5.381757 GCACAGGTATTTCCCCATTATGTA 58.618 41.667 0.00 0.00 36.75 2.29
28 29 4.215109 GCACAGGTATTTCCCCATTATGT 58.785 43.478 0.00 0.00 36.75 2.29
29 30 3.573967 GGCACAGGTATTTCCCCATTATG 59.426 47.826 0.00 0.00 36.75 1.90
30 31 3.206412 TGGCACAGGTATTTCCCCATTAT 59.794 43.478 0.00 0.00 36.75 1.28
31 32 2.583101 TGGCACAGGTATTTCCCCATTA 59.417 45.455 0.00 0.00 36.75 1.90
32 33 1.360852 TGGCACAGGTATTTCCCCATT 59.639 47.619 0.00 0.00 36.75 3.16
33 34 1.006813 TGGCACAGGTATTTCCCCAT 58.993 50.000 0.00 0.00 36.75 4.00
34 35 0.780637 TTGGCACAGGTATTTCCCCA 59.219 50.000 0.00 0.00 42.39 4.96
35 36 1.005450 TCTTGGCACAGGTATTTCCCC 59.995 52.381 0.00 0.00 42.39 4.81
36 37 2.507407 TCTTGGCACAGGTATTTCCC 57.493 50.000 0.00 0.00 42.39 3.97
37 38 2.689983 CCATCTTGGCACAGGTATTTCC 59.310 50.000 0.00 0.00 42.39 3.13
38 39 3.620488 TCCATCTTGGCACAGGTATTTC 58.380 45.455 0.00 0.00 42.39 2.17
39 40 3.737559 TCCATCTTGGCACAGGTATTT 57.262 42.857 0.00 0.00 42.39 1.40
40 41 3.737559 TTCCATCTTGGCACAGGTATT 57.262 42.857 0.00 0.00 42.39 1.89
41 42 3.737559 TTTCCATCTTGGCACAGGTAT 57.262 42.857 0.00 0.00 42.39 2.73
42 43 3.517296 TTTTCCATCTTGGCACAGGTA 57.483 42.857 0.00 0.00 42.39 3.08
43 44 2.365293 GTTTTTCCATCTTGGCACAGGT 59.635 45.455 0.00 0.00 42.39 4.00
44 45 2.364970 TGTTTTTCCATCTTGGCACAGG 59.635 45.455 0.00 0.00 42.39 4.00
45 46 3.731652 TGTTTTTCCATCTTGGCACAG 57.268 42.857 0.00 0.00 42.39 3.66
46 47 3.703556 TCTTGTTTTTCCATCTTGGCACA 59.296 39.130 0.00 0.00 37.47 4.57
47 48 4.037923 TCTCTTGTTTTTCCATCTTGGCAC 59.962 41.667 0.00 0.00 37.47 5.01
48 49 4.214310 TCTCTTGTTTTTCCATCTTGGCA 58.786 39.130 0.00 0.00 37.47 4.92
49 50 4.853924 TCTCTTGTTTTTCCATCTTGGC 57.146 40.909 0.00 0.00 37.47 4.52
50 51 6.809869 ACTTTCTCTTGTTTTTCCATCTTGG 58.190 36.000 0.00 0.00 39.43 3.61
51 52 8.707938 AAACTTTCTCTTGTTTTTCCATCTTG 57.292 30.769 0.00 0.00 33.21 3.02
52 53 9.154847 CAAAACTTTCTCTTGTTTTTCCATCTT 57.845 29.630 0.00 0.00 42.29 2.40
53 54 8.314021 ACAAAACTTTCTCTTGTTTTTCCATCT 58.686 29.630 0.00 0.00 42.29 2.90
54 55 8.382875 CACAAAACTTTCTCTTGTTTTTCCATC 58.617 33.333 0.00 0.00 42.29 3.51
55 56 7.334171 CCACAAAACTTTCTCTTGTTTTTCCAT 59.666 33.333 0.00 0.00 42.29 3.41
56 57 6.648725 CCACAAAACTTTCTCTTGTTTTTCCA 59.351 34.615 0.00 0.00 42.29 3.53
57 58 6.092122 CCCACAAAACTTTCTCTTGTTTTTCC 59.908 38.462 0.00 0.00 42.29 3.13
58 59 6.871492 TCCCACAAAACTTTCTCTTGTTTTTC 59.129 34.615 0.00 0.00 42.29 2.29
59 60 6.764379 TCCCACAAAACTTTCTCTTGTTTTT 58.236 32.000 0.00 0.00 42.29 1.94
60 61 6.353404 TCCCACAAAACTTTCTCTTGTTTT 57.647 33.333 0.00 0.00 44.18 2.43
61 62 5.993748 TCCCACAAAACTTTCTCTTGTTT 57.006 34.783 0.00 0.00 37.92 2.83
62 63 5.993748 TTCCCACAAAACTTTCTCTTGTT 57.006 34.783 0.00 0.00 30.99 2.83
63 64 6.154363 TCAATTCCCACAAAACTTTCTCTTGT 59.846 34.615 0.00 0.00 33.62 3.16
64 65 6.572519 TCAATTCCCACAAAACTTTCTCTTG 58.427 36.000 0.00 0.00 0.00 3.02
65 66 6.790232 TCAATTCCCACAAAACTTTCTCTT 57.210 33.333 0.00 0.00 0.00 2.85
66 67 6.983906 ATCAATTCCCACAAAACTTTCTCT 57.016 33.333 0.00 0.00 0.00 3.10
67 68 7.041848 CCAAATCAATTCCCACAAAACTTTCTC 60.042 37.037 0.00 0.00 0.00 2.87
68 69 6.767423 CCAAATCAATTCCCACAAAACTTTCT 59.233 34.615 0.00 0.00 0.00 2.52
69 70 6.542005 ACCAAATCAATTCCCACAAAACTTTC 59.458 34.615 0.00 0.00 0.00 2.62
70 71 6.422333 ACCAAATCAATTCCCACAAAACTTT 58.578 32.000 0.00 0.00 0.00 2.66
71 72 6.000246 ACCAAATCAATTCCCACAAAACTT 58.000 33.333 0.00 0.00 0.00 2.66
72 73 5.628797 ACCAAATCAATTCCCACAAAACT 57.371 34.783 0.00 0.00 0.00 2.66
73 74 6.691754 AAACCAAATCAATTCCCACAAAAC 57.308 33.333 0.00 0.00 0.00 2.43
74 75 7.709149 AAAAACCAAATCAATTCCCACAAAA 57.291 28.000 0.00 0.00 0.00 2.44
75 76 8.807948 TTAAAAACCAAATCAATTCCCACAAA 57.192 26.923 0.00 0.00 0.00 2.83
76 77 8.844244 CATTAAAAACCAAATCAATTCCCACAA 58.156 29.630 0.00 0.00 0.00 3.33
77 78 7.446625 CCATTAAAAACCAAATCAATTCCCACA 59.553 33.333 0.00 0.00 0.00 4.17
78 79 7.094420 CCCATTAAAAACCAAATCAATTCCCAC 60.094 37.037 0.00 0.00 0.00 4.61
79 80 6.944862 CCCATTAAAAACCAAATCAATTCCCA 59.055 34.615 0.00 0.00 0.00 4.37
80 81 7.171653 TCCCATTAAAAACCAAATCAATTCCC 58.828 34.615 0.00 0.00 0.00 3.97
81 82 7.336679 CCTCCCATTAAAAACCAAATCAATTCC 59.663 37.037 0.00 0.00 0.00 3.01
82 83 7.336679 CCCTCCCATTAAAAACCAAATCAATTC 59.663 37.037 0.00 0.00 0.00 2.17
83 84 7.174413 CCCTCCCATTAAAAACCAAATCAATT 58.826 34.615 0.00 0.00 0.00 2.32
84 85 6.296952 CCCCTCCCATTAAAAACCAAATCAAT 60.297 38.462 0.00 0.00 0.00 2.57
85 86 5.013599 CCCCTCCCATTAAAAACCAAATCAA 59.986 40.000 0.00 0.00 0.00 2.57
86 87 4.534103 CCCCTCCCATTAAAAACCAAATCA 59.466 41.667 0.00 0.00 0.00 2.57
87 88 4.625324 GCCCCTCCCATTAAAAACCAAATC 60.625 45.833 0.00 0.00 0.00 2.17
88 89 3.265737 GCCCCTCCCATTAAAAACCAAAT 59.734 43.478 0.00 0.00 0.00 2.32
89 90 2.640332 GCCCCTCCCATTAAAAACCAAA 59.360 45.455 0.00 0.00 0.00 3.28
90 91 2.261729 GCCCCTCCCATTAAAAACCAA 58.738 47.619 0.00 0.00 0.00 3.67
91 92 1.893210 CGCCCCTCCCATTAAAAACCA 60.893 52.381 0.00 0.00 0.00 3.67
92 93 0.821517 CGCCCCTCCCATTAAAAACC 59.178 55.000 0.00 0.00 0.00 3.27
93 94 0.821517 CCGCCCCTCCCATTAAAAAC 59.178 55.000 0.00 0.00 0.00 2.43
94 95 0.410270 ACCGCCCCTCCCATTAAAAA 59.590 50.000 0.00 0.00 0.00 1.94
95 96 0.323908 CACCGCCCCTCCCATTAAAA 60.324 55.000 0.00 0.00 0.00 1.52
96 97 1.208844 TCACCGCCCCTCCCATTAAA 61.209 55.000 0.00 0.00 0.00 1.52
97 98 1.616930 TCACCGCCCCTCCCATTAA 60.617 57.895 0.00 0.00 0.00 1.40
98 99 2.041430 TCACCGCCCCTCCCATTA 59.959 61.111 0.00 0.00 0.00 1.90
99 100 3.411517 CTCACCGCCCCTCCCATT 61.412 66.667 0.00 0.00 0.00 3.16
100 101 4.741239 ACTCACCGCCCCTCCCAT 62.741 66.667 0.00 0.00 0.00 4.00
104 105 4.436998 CACGACTCACCGCCCCTC 62.437 72.222 0.00 0.00 0.00 4.30
105 106 4.988716 TCACGACTCACCGCCCCT 62.989 66.667 0.00 0.00 0.00 4.79
106 107 4.436998 CTCACGACTCACCGCCCC 62.437 72.222 0.00 0.00 0.00 5.80
107 108 3.371063 TCTCACGACTCACCGCCC 61.371 66.667 0.00 0.00 0.00 6.13
108 109 2.126424 GTCTCACGACTCACCGCC 60.126 66.667 0.00 0.00 37.19 6.13
109 110 2.502080 CGTCTCACGACTCACCGC 60.502 66.667 0.00 0.00 46.05 5.68
110 111 3.250986 TCGTCTCACGACTCACCG 58.749 61.111 0.00 0.00 46.73 4.94
118 119 4.432503 CGTCTGGTTTATTTTCGTCTCACG 60.433 45.833 0.00 0.00 44.19 4.35
119 120 4.682860 TCGTCTGGTTTATTTTCGTCTCAC 59.317 41.667 0.00 0.00 0.00 3.51
120 121 4.873817 TCGTCTGGTTTATTTTCGTCTCA 58.126 39.130 0.00 0.00 0.00 3.27
121 122 5.834239 TTCGTCTGGTTTATTTTCGTCTC 57.166 39.130 0.00 0.00 0.00 3.36
122 123 6.607735 TTTTCGTCTGGTTTATTTTCGTCT 57.392 33.333 0.00 0.00 0.00 4.18
123 124 8.938047 TTATTTTCGTCTGGTTTATTTTCGTC 57.062 30.769 0.00 0.00 0.00 4.20
124 125 9.172820 GTTTATTTTCGTCTGGTTTATTTTCGT 57.827 29.630 0.00 0.00 0.00 3.85
125 126 8.632551 GGTTTATTTTCGTCTGGTTTATTTTCG 58.367 33.333 0.00 0.00 0.00 3.46
126 127 8.918658 GGGTTTATTTTCGTCTGGTTTATTTTC 58.081 33.333 0.00 0.00 0.00 2.29
127 128 7.595875 CGGGTTTATTTTCGTCTGGTTTATTTT 59.404 33.333 0.00 0.00 0.00 1.82
128 129 7.040548 TCGGGTTTATTTTCGTCTGGTTTATTT 60.041 33.333 0.00 0.00 0.00 1.40
129 130 6.430616 TCGGGTTTATTTTCGTCTGGTTTATT 59.569 34.615 0.00 0.00 0.00 1.40
130 131 5.939296 TCGGGTTTATTTTCGTCTGGTTTAT 59.061 36.000 0.00 0.00 0.00 1.40
131 132 5.179182 GTCGGGTTTATTTTCGTCTGGTTTA 59.821 40.000 0.00 0.00 0.00 2.01
132 133 4.023792 GTCGGGTTTATTTTCGTCTGGTTT 60.024 41.667 0.00 0.00 0.00 3.27
133 134 3.499537 GTCGGGTTTATTTTCGTCTGGTT 59.500 43.478 0.00 0.00 0.00 3.67
134 135 3.069289 GTCGGGTTTATTTTCGTCTGGT 58.931 45.455 0.00 0.00 0.00 4.00
135 136 2.093152 CGTCGGGTTTATTTTCGTCTGG 59.907 50.000 0.00 0.00 0.00 3.86
136 137 2.988493 TCGTCGGGTTTATTTTCGTCTG 59.012 45.455 0.00 0.00 0.00 3.51
137 138 3.302365 TCGTCGGGTTTATTTTCGTCT 57.698 42.857 0.00 0.00 0.00 4.18
138 139 4.388189 TTTCGTCGGGTTTATTTTCGTC 57.612 40.909 0.00 0.00 0.00 4.20
139 140 4.809815 TTTTCGTCGGGTTTATTTTCGT 57.190 36.364 0.00 0.00 0.00 3.85
159 160 2.741759 GGATTGCGTCCATGGTTTTT 57.258 45.000 12.58 0.00 46.96 1.94
169 170 2.076863 AGCAGTAAACAGGATTGCGTC 58.923 47.619 0.00 0.00 39.63 5.19
170 171 2.076863 GAGCAGTAAACAGGATTGCGT 58.923 47.619 0.00 0.00 39.63 5.24
171 172 1.398390 GGAGCAGTAAACAGGATTGCG 59.602 52.381 0.00 0.00 39.63 4.85
172 173 2.436417 TGGAGCAGTAAACAGGATTGC 58.564 47.619 0.00 0.00 35.09 3.56
173 174 6.115446 TCTAATGGAGCAGTAAACAGGATTG 58.885 40.000 0.00 0.00 0.00 2.67
174 175 6.313519 TCTAATGGAGCAGTAAACAGGATT 57.686 37.500 0.00 0.00 0.00 3.01
175 176 5.957771 TCTAATGGAGCAGTAAACAGGAT 57.042 39.130 0.00 0.00 0.00 3.24
176 177 5.248477 ACTTCTAATGGAGCAGTAAACAGGA 59.752 40.000 0.00 0.00 0.00 3.86
177 178 5.491982 ACTTCTAATGGAGCAGTAAACAGG 58.508 41.667 0.00 0.00 0.00 4.00
178 179 6.402222 AGACTTCTAATGGAGCAGTAAACAG 58.598 40.000 0.00 0.00 0.00 3.16
179 180 6.360370 AGACTTCTAATGGAGCAGTAAACA 57.640 37.500 0.00 0.00 0.00 2.83
180 181 9.685828 CTATAGACTTCTAATGGAGCAGTAAAC 57.314 37.037 0.00 0.00 31.39 2.01
181 182 9.422681 ACTATAGACTTCTAATGGAGCAGTAAA 57.577 33.333 6.78 0.00 31.39 2.01
182 183 8.998277 ACTATAGACTTCTAATGGAGCAGTAA 57.002 34.615 6.78 0.00 31.39 2.24
183 184 8.441572 AGACTATAGACTTCTAATGGAGCAGTA 58.558 37.037 6.78 0.00 31.39 2.74
184 185 7.294584 AGACTATAGACTTCTAATGGAGCAGT 58.705 38.462 6.78 0.00 31.39 4.40
185 186 7.759489 AGACTATAGACTTCTAATGGAGCAG 57.241 40.000 6.78 0.00 31.39 4.24
186 187 9.642343 TTAAGACTATAGACTTCTAATGGAGCA 57.358 33.333 18.68 0.00 32.71 4.26
189 190 9.589461 CCCTTAAGACTATAGACTTCTAATGGA 57.411 37.037 18.68 0.00 32.71 3.41
190 191 9.589461 TCCCTTAAGACTATAGACTTCTAATGG 57.411 37.037 18.68 14.58 32.71 3.16
192 193 9.304335 GCTCCCTTAAGACTATAGACTTCTAAT 57.696 37.037 18.68 0.44 32.71 1.73
193 194 8.280084 TGCTCCCTTAAGACTATAGACTTCTAA 58.720 37.037 18.68 9.53 32.71 2.10
194 195 7.813331 TGCTCCCTTAAGACTATAGACTTCTA 58.187 38.462 18.68 9.28 32.71 2.10
195 196 6.674573 TGCTCCCTTAAGACTATAGACTTCT 58.325 40.000 18.68 3.39 32.71 2.85
196 197 6.548251 ACTGCTCCCTTAAGACTATAGACTTC 59.452 42.308 18.68 5.87 32.71 3.01
197 198 6.436890 ACTGCTCCCTTAAGACTATAGACTT 58.563 40.000 19.02 19.02 34.66 3.01
198 199 6.020881 ACTGCTCCCTTAAGACTATAGACT 57.979 41.667 6.78 2.28 0.00 3.24
199 200 6.321690 TCAACTGCTCCCTTAAGACTATAGAC 59.678 42.308 6.78 0.00 0.00 2.59
200 201 6.432581 TCAACTGCTCCCTTAAGACTATAGA 58.567 40.000 6.78 0.00 0.00 1.98
201 202 6.716934 TCAACTGCTCCCTTAAGACTATAG 57.283 41.667 3.36 0.00 0.00 1.31
202 203 8.005388 ACTATCAACTGCTCCCTTAAGACTATA 58.995 37.037 3.36 0.00 0.00 1.31
203 204 6.841755 ACTATCAACTGCTCCCTTAAGACTAT 59.158 38.462 3.36 0.00 0.00 2.12
204 205 6.195700 ACTATCAACTGCTCCCTTAAGACTA 58.804 40.000 3.36 0.00 0.00 2.59
205 206 5.026790 ACTATCAACTGCTCCCTTAAGACT 58.973 41.667 3.36 0.00 0.00 3.24
206 207 5.128008 AGACTATCAACTGCTCCCTTAAGAC 59.872 44.000 3.36 0.00 0.00 3.01
207 208 5.273208 AGACTATCAACTGCTCCCTTAAGA 58.727 41.667 3.36 0.00 0.00 2.10
208 209 5.452636 GGAGACTATCAACTGCTCCCTTAAG 60.453 48.000 0.00 0.00 39.33 1.85
209 210 4.406003 GGAGACTATCAACTGCTCCCTTAA 59.594 45.833 0.00 0.00 39.33 1.85
210 211 3.961408 GGAGACTATCAACTGCTCCCTTA 59.039 47.826 0.00 0.00 39.33 2.69
211 212 2.769095 GGAGACTATCAACTGCTCCCTT 59.231 50.000 0.00 0.00 39.33 3.95
212 213 2.393646 GGAGACTATCAACTGCTCCCT 58.606 52.381 0.00 0.00 39.33 4.20
213 214 1.067821 CGGAGACTATCAACTGCTCCC 59.932 57.143 0.00 0.00 41.59 4.30
214 215 1.537135 GCGGAGACTATCAACTGCTCC 60.537 57.143 0.00 0.00 41.29 4.70
215 216 1.537135 GGCGGAGACTATCAACTGCTC 60.537 57.143 0.00 0.00 35.34 4.26
216 217 0.461961 GGCGGAGACTATCAACTGCT 59.538 55.000 0.00 0.00 35.34 4.24
217 218 0.872021 CGGCGGAGACTATCAACTGC 60.872 60.000 0.00 0.00 0.00 4.40
218 219 0.249073 CCGGCGGAGACTATCAACTG 60.249 60.000 24.41 0.00 0.00 3.16
219 220 0.683504 ACCGGCGGAGACTATCAACT 60.684 55.000 35.78 1.21 0.00 3.16
220 221 0.248949 GACCGGCGGAGACTATCAAC 60.249 60.000 35.78 6.34 0.00 3.18
221 222 0.681887 TGACCGGCGGAGACTATCAA 60.682 55.000 35.78 6.48 0.00 2.57
222 223 0.681887 TTGACCGGCGGAGACTATCA 60.682 55.000 35.78 21.73 0.00 2.15
223 224 0.674534 ATTGACCGGCGGAGACTATC 59.325 55.000 35.78 19.10 0.00 2.08
224 225 1.120530 AATTGACCGGCGGAGACTAT 58.879 50.000 35.78 20.51 0.00 2.12
225 226 0.899720 AAATTGACCGGCGGAGACTA 59.100 50.000 35.78 19.23 0.00 2.59
226 227 0.036306 AAAATTGACCGGCGGAGACT 59.964 50.000 35.78 10.44 0.00 3.24
227 228 0.446616 GAAAATTGACCGGCGGAGAC 59.553 55.000 35.78 22.33 0.00 3.36
228 229 0.035598 TGAAAATTGACCGGCGGAGA 59.964 50.000 35.78 17.86 0.00 3.71
229 230 1.064060 GATGAAAATTGACCGGCGGAG 59.936 52.381 35.78 7.40 0.00 4.63
230 231 1.091537 GATGAAAATTGACCGGCGGA 58.908 50.000 35.78 11.41 0.00 5.54
231 232 1.064060 GAGATGAAAATTGACCGGCGG 59.936 52.381 27.06 27.06 0.00 6.13
232 233 1.737236 TGAGATGAAAATTGACCGGCG 59.263 47.619 0.00 0.00 0.00 6.46
233 234 3.378112 TGATGAGATGAAAATTGACCGGC 59.622 43.478 0.00 0.00 0.00 6.13
234 235 4.877823 TCTGATGAGATGAAAATTGACCGG 59.122 41.667 0.00 0.00 0.00 5.28
235 236 5.814188 TCTCTGATGAGATGAAAATTGACCG 59.186 40.000 0.00 0.00 43.73 4.79
266 267 1.856920 AGGTGGAAGGGAGGACAAAAA 59.143 47.619 0.00 0.00 0.00 1.94
267 268 1.423921 GAGGTGGAAGGGAGGACAAAA 59.576 52.381 0.00 0.00 0.00 2.44
268 269 1.064825 GAGGTGGAAGGGAGGACAAA 58.935 55.000 0.00 0.00 0.00 2.83
269 270 0.840722 GGAGGTGGAAGGGAGGACAA 60.841 60.000 0.00 0.00 0.00 3.18
270 271 1.229529 GGAGGTGGAAGGGAGGACA 60.230 63.158 0.00 0.00 0.00 4.02
271 272 1.996187 GGGAGGTGGAAGGGAGGAC 60.996 68.421 0.00 0.00 0.00 3.85
272 273 2.454941 GGGAGGTGGAAGGGAGGA 59.545 66.667 0.00 0.00 0.00 3.71
273 274 2.124996 TGGGAGGTGGAAGGGAGG 59.875 66.667 0.00 0.00 0.00 4.30
274 275 0.842467 AAGTGGGAGGTGGAAGGGAG 60.842 60.000 0.00 0.00 0.00 4.30
275 276 0.840722 GAAGTGGGAGGTGGAAGGGA 60.841 60.000 0.00 0.00 0.00 4.20
276 277 1.685820 GAAGTGGGAGGTGGAAGGG 59.314 63.158 0.00 0.00 0.00 3.95
277 278 1.133809 TGGAAGTGGGAGGTGGAAGG 61.134 60.000 0.00 0.00 0.00 3.46
278 279 0.326264 CTGGAAGTGGGAGGTGGAAG 59.674 60.000 0.00 0.00 0.00 3.46
279 280 2.463441 CTGGAAGTGGGAGGTGGAA 58.537 57.895 0.00 0.00 0.00 3.53
280 281 4.232905 CTGGAAGTGGGAGGTGGA 57.767 61.111 0.00 0.00 0.00 4.02
291 292 0.618458 TTCGGGGGAATCACTGGAAG 59.382 55.000 0.00 0.00 42.29 3.46
292 293 0.326927 GTTCGGGGGAATCACTGGAA 59.673 55.000 0.00 0.00 0.00 3.53
293 294 1.559065 GGTTCGGGGGAATCACTGGA 61.559 60.000 0.00 0.00 0.00 3.86
294 295 1.077716 GGTTCGGGGGAATCACTGG 60.078 63.158 0.00 0.00 0.00 4.00
295 296 1.449601 CGGTTCGGGGGAATCACTG 60.450 63.158 0.00 0.00 0.00 3.66
296 297 1.196104 TTCGGTTCGGGGGAATCACT 61.196 55.000 0.00 0.00 0.00 3.41
297 298 1.022982 GTTCGGTTCGGGGGAATCAC 61.023 60.000 0.00 0.00 0.00 3.06
298 299 1.297364 GTTCGGTTCGGGGGAATCA 59.703 57.895 0.00 0.00 0.00 2.57
299 300 1.812507 CGTTCGGTTCGGGGGAATC 60.813 63.158 0.00 0.00 0.00 2.52
300 301 2.266689 CGTTCGGTTCGGGGGAAT 59.733 61.111 0.00 0.00 0.00 3.01
301 302 2.916703 TCGTTCGGTTCGGGGGAA 60.917 61.111 0.00 0.00 0.00 3.97
307 308 1.542272 TTTGCTCGTCGTTCGGTTCG 61.542 55.000 0.00 0.00 40.32 3.95
315 316 1.865865 ATGTCAGTTTTGCTCGTCGT 58.134 45.000 0.00 0.00 0.00 4.34
316 317 2.563976 CAATGTCAGTTTTGCTCGTCG 58.436 47.619 0.00 0.00 0.00 5.12
317 318 2.310577 GCAATGTCAGTTTTGCTCGTC 58.689 47.619 2.95 0.00 43.75 4.20
318 319 1.334059 CGCAATGTCAGTTTTGCTCGT 60.334 47.619 7.78 0.00 44.68 4.18
321 322 2.352030 CCATCGCAATGTCAGTTTTGCT 60.352 45.455 7.78 0.00 44.68 3.91
322 323 1.987770 CCATCGCAATGTCAGTTTTGC 59.012 47.619 0.37 0.37 43.69 3.68
323 324 2.228582 TCCCATCGCAATGTCAGTTTTG 59.771 45.455 0.00 0.00 0.00 2.44
328 329 0.460109 TCGTCCCATCGCAATGTCAG 60.460 55.000 0.00 0.00 0.00 3.51
329 330 0.460109 CTCGTCCCATCGCAATGTCA 60.460 55.000 0.00 0.00 0.00 3.58
330 331 1.154205 CCTCGTCCCATCGCAATGTC 61.154 60.000 0.00 0.00 0.00 3.06
397 398 9.695526 GGTTAATTTTCGTAGGTTAATTTTGGT 57.304 29.630 0.00 0.00 0.00 3.67
398 399 9.694137 TGGTTAATTTTCGTAGGTTAATTTTGG 57.306 29.630 0.00 0.00 0.00 3.28
401 402 9.902196 CACTGGTTAATTTTCGTAGGTTAATTT 57.098 29.630 0.00 0.00 0.00 1.82
402 403 9.287373 TCACTGGTTAATTTTCGTAGGTTAATT 57.713 29.630 0.00 0.00 0.00 1.40
403 404 8.851541 TCACTGGTTAATTTTCGTAGGTTAAT 57.148 30.769 0.00 0.00 0.00 1.40
404 405 8.674263 TTCACTGGTTAATTTTCGTAGGTTAA 57.326 30.769 0.00 0.00 0.00 2.01
405 406 8.674263 TTTCACTGGTTAATTTTCGTAGGTTA 57.326 30.769 0.00 0.00 0.00 2.85
406 407 7.571080 TTTCACTGGTTAATTTTCGTAGGTT 57.429 32.000 0.00 0.00 0.00 3.50
407 408 7.571080 TTTTCACTGGTTAATTTTCGTAGGT 57.429 32.000 0.00 0.00 0.00 3.08
935 946 4.423209 GGAGGGAGGAGCAGGGGT 62.423 72.222 0.00 0.00 0.00 4.95
976 988 1.789576 GCAGGGGGAAGGGAGAACAA 61.790 60.000 0.00 0.00 0.00 2.83
1071 1083 1.881072 CGCTCCTTCCCATCATCCATG 60.881 57.143 0.00 0.00 0.00 3.66
1177 1221 3.326006 TCTGTCTGAACTGCAATCCTCTT 59.674 43.478 0.00 0.00 0.00 2.85
1240 1284 6.770303 TGCAAATTATAGATTCCATTCGGTCA 59.230 34.615 0.00 0.00 0.00 4.02
1358 1402 2.503331 CACTTACCAGCCACAACATCA 58.497 47.619 0.00 0.00 0.00 3.07
1380 1424 6.382859 TGCAACCTATACTCCATAAGAGACAA 59.617 38.462 0.00 0.00 46.50 3.18
1426 1470 4.622740 GCAAGTTTCAACCTACAATCATGC 59.377 41.667 0.00 0.00 0.00 4.06
1600 1645 2.093973 CAGGAAAGGTGTCGCATCTAGT 60.094 50.000 0.00 0.00 0.00 2.57
1603 1648 0.976641 TCAGGAAAGGTGTCGCATCT 59.023 50.000 0.00 0.00 0.00 2.90
1627 1672 9.783081 ACACTATGAAATGCATCATACATAAGA 57.217 29.630 0.00 0.00 40.44 2.10
1960 2027 2.051518 GCCATTCCCGGATGCACAA 61.052 57.895 0.73 0.00 0.00 3.33
1984 2051 6.939163 CAGTAGAGCAATAAATAGGATTGGCT 59.061 38.462 0.00 0.00 35.28 4.75
2102 2170 4.878439 TGCTTCTACACGTGAACATAAGT 58.122 39.130 25.01 0.00 0.00 2.24
2224 2293 1.048724 CCCAGAGCCCTCCGACATAA 61.049 60.000 0.00 0.00 0.00 1.90
2225 2294 1.457643 CCCAGAGCCCTCCGACATA 60.458 63.158 0.00 0.00 0.00 2.29
2320 2389 3.753815 TGCTGATCATTTGACCTGTCAA 58.246 40.909 8.58 8.58 46.72 3.18
2386 2455 4.277239 CGAGTGCGTTGAATGGGA 57.723 55.556 0.00 0.00 0.00 4.37
2434 2503 0.819259 GCTGTCTCCAGTTGTGCCAA 60.819 55.000 0.00 0.00 41.02 4.52
2587 2658 0.329596 AGAGGAATGGAACCTGGTGC 59.670 55.000 0.00 0.00 37.93 5.01
2678 2752 8.870160 TTAGATTTTGTTCACACCAGATTTTG 57.130 30.769 0.00 0.00 0.00 2.44
2733 2823 9.897744 ATTGACACATTTCTATTTGTACACTTG 57.102 29.630 0.00 0.00 0.00 3.16
2867 2963 1.559219 TGCTAATCACCTTGCAGGCTA 59.441 47.619 2.50 0.00 39.63 3.93
2911 3014 3.751698 GCTTGAGAAAAACGAGGTACCAT 59.248 43.478 15.94 0.00 0.00 3.55
2935 3038 4.697352 ACCTATTCTTGTGCATGTCTTCAC 59.303 41.667 0.00 0.00 0.00 3.18
2996 3103 1.358787 AGATGCACCCCTCCAAAATGA 59.641 47.619 0.00 0.00 0.00 2.57
3260 3367 7.158021 ACTCAAATCTCTACAGAAAGGTGAAG 58.842 38.462 0.00 0.00 30.24 3.02
3300 3407 6.615264 AACTCACAAGCTTATATGCATCTG 57.385 37.500 0.19 8.90 34.99 2.90
3371 3478 3.276857 CCATGTCTCTTTCTGTCATGGG 58.723 50.000 12.82 0.00 46.58 4.00
3442 3549 8.814038 AATTTGAGTCATCTAGCAAAAGGTAT 57.186 30.769 0.00 0.00 34.38 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.