Multiple sequence alignment - TraesCS3A01G194400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G194400 chr3A 100.000 2339 0 0 1 2339 269672755 269675093 0.000000e+00 4320.0
1 TraesCS3A01G194400 chr3A 95.706 163 5 2 475 635 477708330 477708168 6.410000e-66 261.0
2 TraesCS3A01G194400 chr3A 86.842 190 25 0 1 190 373338610 373338421 1.820000e-51 213.0
3 TraesCS3A01G194400 chr7A 94.156 616 29 6 747 1361 241744774 241744165 0.000000e+00 931.0
4 TraesCS3A01G194400 chr7A 86.458 96 13 0 1913 2008 65118941 65119036 3.180000e-19 106.0
5 TraesCS3A01G194400 chr7A 100.000 41 0 0 2299 2339 54743325 54743285 2.490000e-10 76.8
6 TraesCS3A01G194400 chr3B 92.345 614 42 1 747 1360 358686562 358687170 0.000000e+00 869.0
7 TraesCS3A01G194400 chr3B 93.931 379 22 1 1655 2033 346628453 346628830 2.610000e-159 571.0
8 TraesCS3A01G194400 chr3B 92.580 283 16 4 192 473 346627911 346628189 3.620000e-108 401.0
9 TraesCS3A01G194400 chr3B 87.097 186 24 0 6 191 71156334 71156149 6.550000e-51 211.0
10 TraesCS3A01G194400 chr3B 86.294 197 10 8 1432 1614 346628260 346628453 5.100000e-47 198.0
11 TraesCS3A01G194400 chr3B 87.654 81 8 1 1914 1992 503576052 503575972 2.470000e-15 93.5
12 TraesCS3A01G194400 chr3B 97.826 46 1 0 2294 2339 35019936 35019891 1.930000e-11 80.5
13 TraesCS3A01G194400 chr4D 92.045 616 46 2 747 1361 349921013 349921626 0.000000e+00 863.0
14 TraesCS3A01G194400 chr4D 93.529 170 9 2 473 640 243613270 243613439 3.860000e-63 252.0
15 TraesCS3A01G194400 chr4D 97.826 46 1 0 2294 2339 139097565 139097610 1.930000e-11 80.5
16 TraesCS3A01G194400 chr4D 95.652 46 2 0 2294 2339 295376729 295376774 8.960000e-10 75.0
17 TraesCS3A01G194400 chr4D 95.652 46 2 0 2294 2339 451761893 451761938 8.960000e-10 75.0
18 TraesCS3A01G194400 chr4D 97.297 37 1 0 1915 1951 251830779 251830743 1.940000e-06 63.9
19 TraesCS3A01G194400 chr4D 86.441 59 7 1 1918 1975 506726084 506726142 1.940000e-06 63.9
20 TraesCS3A01G194400 chr4D 96.970 33 1 0 1915 1947 220731413 220731381 3.250000e-04 56.5
21 TraesCS3A01G194400 chr5B 92.020 614 46 2 747 1360 508067314 508066704 0.000000e+00 859.0
22 TraesCS3A01G194400 chr5B 87.831 189 23 0 3 191 112557681 112557869 3.030000e-54 222.0
23 TraesCS3A01G194400 chr5B 87.500 72 9 0 1934 2005 419782128 419782199 1.490000e-12 84.2
24 TraesCS3A01G194400 chr6A 92.346 601 44 2 747 1345 101364792 101364192 0.000000e+00 854.0
25 TraesCS3A01G194400 chr6A 95.000 40 2 0 1912 1951 258675857 258675896 1.940000e-06 63.9
26 TraesCS3A01G194400 chr6D 91.248 617 50 4 747 1361 356157372 356156758 0.000000e+00 837.0
27 TraesCS3A01G194400 chr6D 90.598 117 9 1 2185 2299 294006656 294006772 1.120000e-33 154.0
28 TraesCS3A01G194400 chr6D 80.282 142 25 3 1919 2060 270146758 270146896 1.140000e-18 104.0
29 TraesCS3A01G194400 chr6D 88.312 77 9 0 1916 1992 36066623 36066699 2.470000e-15 93.5
30 TraesCS3A01G194400 chr6D 84.615 91 11 3 1914 2003 362995133 362995221 1.150000e-13 87.9
31 TraesCS3A01G194400 chr6D 100.000 41 0 0 2299 2339 80537841 80537881 2.490000e-10 76.8
32 TraesCS3A01G194400 chr6D 100.000 41 0 0 2299 2339 103133847 103133887 2.490000e-10 76.8
33 TraesCS3A01G194400 chr6D 97.727 44 1 0 2296 2339 113374891 113374848 2.490000e-10 76.8
34 TraesCS3A01G194400 chr6D 100.000 41 0 0 2299 2339 130531912 130531952 2.490000e-10 76.8
35 TraesCS3A01G194400 chr6D 100.000 41 0 0 2299 2339 303223258 303223218 2.490000e-10 76.8
36 TraesCS3A01G194400 chr6D 100.000 41 0 0 2299 2339 348272087 348272127 2.490000e-10 76.8
37 TraesCS3A01G194400 chr6D 100.000 41 0 0 2299 2339 446481484 446481444 2.490000e-10 76.8
38 TraesCS3A01G194400 chr6D 100.000 41 0 0 2299 2339 456563009 456563049 2.490000e-10 76.8
39 TraesCS3A01G194400 chr6D 95.652 46 2 0 2294 2339 125403436 125403481 8.960000e-10 75.0
40 TraesCS3A01G194400 chr6D 95.652 46 2 0 2294 2339 141957915 141957870 8.960000e-10 75.0
41 TraesCS3A01G194400 chr7D 90.484 620 53 4 747 1363 158963377 158963993 0.000000e+00 813.0
42 TraesCS3A01G194400 chr7D 91.146 192 16 1 1 191 423653300 423653109 2.310000e-65 259.0
43 TraesCS3A01G194400 chr7D 91.620 179 15 0 3 181 460664226 460664404 4.990000e-62 248.0
44 TraesCS3A01G194400 chr7D 92.090 177 12 2 475 649 477150995 477151171 4.990000e-62 248.0
45 TraesCS3A01G194400 chr7D 91.620 179 13 2 465 641 23497768 23497590 1.800000e-61 246.0
46 TraesCS3A01G194400 chr7D 90.000 120 10 1 2185 2302 277482652 277482533 1.120000e-33 154.0
47 TraesCS3A01G194400 chr7D 85.417 96 14 0 1913 2008 579545456 579545551 1.480000e-17 100.0
48 TraesCS3A01G194400 chr7D 95.745 47 2 0 2293 2339 33663338 33663292 2.490000e-10 76.8
49 TraesCS3A01G194400 chr1B 90.323 620 56 4 747 1366 227711217 227710602 0.000000e+00 809.0
50 TraesCS3A01G194400 chr1B 87.831 189 23 0 3 191 26883004 26883192 3.030000e-54 222.0
51 TraesCS3A01G194400 chr1B 88.298 188 18 3 6 191 69835075 69834890 3.030000e-54 222.0
52 TraesCS3A01G194400 chr1B 88.333 180 21 0 12 191 605582127 605581948 1.410000e-52 217.0
53 TraesCS3A01G194400 chr1B 85.870 92 13 0 1924 2015 583426441 583426350 5.320000e-17 99.0
54 TraesCS3A01G194400 chr1B 97.826 46 1 0 2294 2339 57717226 57717271 1.930000e-11 80.5
55 TraesCS3A01G194400 chr4A 89.935 616 61 1 747 1361 472646942 472647557 0.000000e+00 793.0
56 TraesCS3A01G194400 chr4A 86.000 100 13 1 1910 2008 435607553 435607454 3.180000e-19 106.0
57 TraesCS3A01G194400 chr3D 93.902 328 19 1 1976 2302 263797743 263797416 5.810000e-136 494.0
58 TraesCS3A01G194400 chr3D 95.789 285 11 1 192 476 263798925 263798642 2.120000e-125 459.0
59 TraesCS3A01G194400 chr3D 89.368 348 12 10 1360 1690 263798550 263798211 4.650000e-112 414.0
60 TraesCS3A01G194400 chr3D 94.611 167 6 3 472 635 145972713 145972547 2.980000e-64 255.0
61 TraesCS3A01G194400 chr3D 94.012 167 8 2 471 635 22383433 22383599 3.860000e-63 252.0
62 TraesCS3A01G194400 chr3D 94.643 112 5 1 637 747 263798642 263798531 3.090000e-39 172.0
63 TraesCS3A01G194400 chr3D 90.000 120 10 1 2185 2302 333091082 333090963 1.120000e-33 154.0
64 TraesCS3A01G194400 chr3D 98.276 58 1 0 1805 1862 263797895 263797838 4.110000e-18 102.0
65 TraesCS3A01G194400 chr3D 97.826 46 1 0 2294 2339 406428637 406428592 1.930000e-11 80.5
66 TraesCS3A01G194400 chr3D 95.745 47 2 0 2293 2339 108085524 108085570 2.490000e-10 76.8
67 TraesCS3A01G194400 chr3D 96.970 33 1 0 1915 1947 302782428 302782396 3.250000e-04 56.5
68 TraesCS3A01G194400 chr1D 95.210 167 6 2 471 635 480252227 480252393 1.780000e-66 263.0
69 TraesCS3A01G194400 chr1D 80.153 262 48 3 1914 2171 405051171 405050910 2.370000e-45 193.0
70 TraesCS3A01G194400 chr1D 97.826 46 1 0 2294 2339 273299791 273299746 1.930000e-11 80.5
71 TraesCS3A01G194400 chr1D 95.652 46 2 0 2294 2339 411446393 411446438 8.960000e-10 75.0
72 TraesCS3A01G194400 chr6B 92.179 179 11 3 475 651 230766974 230767151 1.390000e-62 250.0
73 TraesCS3A01G194400 chr6B 87.895 190 22 1 6 194 532249292 532249103 3.030000e-54 222.0
74 TraesCS3A01G194400 chr6B 97.826 46 1 0 2294 2339 636918926 636918881 1.930000e-11 80.5
75 TraesCS3A01G194400 chr6B 97.826 46 1 0 2294 2339 656126771 656126816 1.930000e-11 80.5
76 TraesCS3A01G194400 chr2B 90.811 185 14 3 453 635 134045932 134045749 6.460000e-61 244.0
77 TraesCS3A01G194400 chr2B 97.826 46 1 0 2294 2339 153627557 153627512 1.930000e-11 80.5
78 TraesCS3A01G194400 chr2A 90.698 86 8 0 1919 2004 197662194 197662279 5.280000e-22 115.0
79 TraesCS3A01G194400 chr5A 89.873 79 8 0 1914 1992 692700756 692700834 4.110000e-18 102.0
80 TraesCS3A01G194400 chr5A 97.826 46 1 0 2294 2339 179387506 179387461 1.930000e-11 80.5
81 TraesCS3A01G194400 chr2D 100.000 41 0 0 2299 2339 127276279 127276239 2.490000e-10 76.8
82 TraesCS3A01G194400 chr5D 95.652 46 2 0 2294 2339 329454789 329454834 8.960000e-10 75.0
83 TraesCS3A01G194400 chr4B 86.567 67 9 0 1925 1991 466683263 466683197 8.960000e-10 75.0
84 TraesCS3A01G194400 chr1A 97.297 37 1 0 1915 1951 48523417 48523453 1.940000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G194400 chr3A 269672755 269675093 2338 False 4320.0 4320 100.0000 1 2339 1 chr3A.!!$F1 2338
1 TraesCS3A01G194400 chr7A 241744165 241744774 609 True 931.0 931 94.1560 747 1361 1 chr7A.!!$R2 614
2 TraesCS3A01G194400 chr3B 358686562 358687170 608 False 869.0 869 92.3450 747 1360 1 chr3B.!!$F1 613
3 TraesCS3A01G194400 chr3B 346627911 346628830 919 False 390.0 571 90.9350 192 2033 3 chr3B.!!$F2 1841
4 TraesCS3A01G194400 chr4D 349921013 349921626 613 False 863.0 863 92.0450 747 1361 1 chr4D.!!$F4 614
5 TraesCS3A01G194400 chr5B 508066704 508067314 610 True 859.0 859 92.0200 747 1360 1 chr5B.!!$R1 613
6 TraesCS3A01G194400 chr6A 101364192 101364792 600 True 854.0 854 92.3460 747 1345 1 chr6A.!!$R1 598
7 TraesCS3A01G194400 chr6D 356156758 356157372 614 True 837.0 837 91.2480 747 1361 1 chr6D.!!$R4 614
8 TraesCS3A01G194400 chr7D 158963377 158963993 616 False 813.0 813 90.4840 747 1363 1 chr7D.!!$F1 616
9 TraesCS3A01G194400 chr1B 227710602 227711217 615 True 809.0 809 90.3230 747 1366 1 chr1B.!!$R2 619
10 TraesCS3A01G194400 chr4A 472646942 472647557 615 False 793.0 793 89.9350 747 1361 1 chr4A.!!$F1 614
11 TraesCS3A01G194400 chr3D 263797416 263798925 1509 True 328.2 494 94.3956 192 2302 5 chr3D.!!$R5 2110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 362 1.025812 ATGGGAGTGTCGAGATCGTC 58.974 55.0 1.7 0.0 40.8 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 2588 0.17576 TGCTGCCGGAACTCATCTAC 59.824 55.0 5.05 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.004752 ACCAGCTGATACCATTGTTCC 57.995 47.619 17.39 0.00 0.00 3.62
23 24 2.308570 ACCAGCTGATACCATTGTTCCA 59.691 45.455 17.39 0.00 0.00 3.53
24 25 3.053395 ACCAGCTGATACCATTGTTCCAT 60.053 43.478 17.39 0.00 0.00 3.41
25 26 3.567164 CCAGCTGATACCATTGTTCCATC 59.433 47.826 17.39 0.00 0.00 3.51
26 27 4.201657 CAGCTGATACCATTGTTCCATCA 58.798 43.478 8.42 0.00 0.00 3.07
27 28 4.825634 CAGCTGATACCATTGTTCCATCAT 59.174 41.667 8.42 0.00 0.00 2.45
28 29 5.301045 CAGCTGATACCATTGTTCCATCATT 59.699 40.000 8.42 0.00 0.00 2.57
29 30 5.895534 AGCTGATACCATTGTTCCATCATTT 59.104 36.000 0.00 0.00 0.00 2.32
30 31 6.381994 AGCTGATACCATTGTTCCATCATTTT 59.618 34.615 0.00 0.00 0.00 1.82
31 32 7.560991 AGCTGATACCATTGTTCCATCATTTTA 59.439 33.333 0.00 0.00 0.00 1.52
32 33 8.362639 GCTGATACCATTGTTCCATCATTTTAT 58.637 33.333 0.00 0.00 0.00 1.40
61 62 9.614792 TCAAAATTCCTCCTAATAGTTAGCTTC 57.385 33.333 0.00 0.00 31.81 3.86
62 63 9.396022 CAAAATTCCTCCTAATAGTTAGCTTCA 57.604 33.333 0.00 0.00 31.81 3.02
63 64 8.966069 AAATTCCTCCTAATAGTTAGCTTCAC 57.034 34.615 0.00 0.00 31.81 3.18
64 65 7.922699 ATTCCTCCTAATAGTTAGCTTCACT 57.077 36.000 0.00 0.00 31.81 3.41
65 66 6.716934 TCCTCCTAATAGTTAGCTTCACTG 57.283 41.667 8.23 0.00 31.81 3.66
66 67 6.195700 TCCTCCTAATAGTTAGCTTCACTGT 58.804 40.000 8.23 0.00 31.81 3.55
67 68 6.668283 TCCTCCTAATAGTTAGCTTCACTGTT 59.332 38.462 11.06 11.06 31.30 3.16
68 69 7.180408 TCCTCCTAATAGTTAGCTTCACTGTTT 59.820 37.037 11.42 6.89 29.39 2.83
69 70 7.492994 CCTCCTAATAGTTAGCTTCACTGTTTC 59.507 40.741 11.42 0.00 29.39 2.78
70 71 7.903145 TCCTAATAGTTAGCTTCACTGTTTCA 58.097 34.615 11.42 0.00 29.39 2.69
71 72 7.817962 TCCTAATAGTTAGCTTCACTGTTTCAC 59.182 37.037 11.42 0.00 29.39 3.18
72 73 6.803154 AATAGTTAGCTTCACTGTTTCACC 57.197 37.500 8.23 0.00 0.00 4.02
73 74 4.150897 AGTTAGCTTCACTGTTTCACCA 57.849 40.909 0.00 0.00 0.00 4.17
74 75 4.718961 AGTTAGCTTCACTGTTTCACCAT 58.281 39.130 0.00 0.00 0.00 3.55
75 76 4.757149 AGTTAGCTTCACTGTTTCACCATC 59.243 41.667 0.00 0.00 0.00 3.51
76 77 2.508526 AGCTTCACTGTTTCACCATCC 58.491 47.619 0.00 0.00 0.00 3.51
77 78 2.107204 AGCTTCACTGTTTCACCATCCT 59.893 45.455 0.00 0.00 0.00 3.24
78 79 3.327757 AGCTTCACTGTTTCACCATCCTA 59.672 43.478 0.00 0.00 0.00 2.94
79 80 3.686726 GCTTCACTGTTTCACCATCCTAG 59.313 47.826 0.00 0.00 0.00 3.02
80 81 4.563580 GCTTCACTGTTTCACCATCCTAGA 60.564 45.833 0.00 0.00 0.00 2.43
81 82 5.738909 CTTCACTGTTTCACCATCCTAGAT 58.261 41.667 0.00 0.00 0.00 1.98
82 83 5.344743 TCACTGTTTCACCATCCTAGATC 57.655 43.478 0.00 0.00 0.00 2.75
83 84 5.026121 TCACTGTTTCACCATCCTAGATCT 58.974 41.667 0.00 0.00 0.00 2.75
84 85 5.127845 TCACTGTTTCACCATCCTAGATCTC 59.872 44.000 0.00 0.00 0.00 2.75
85 86 5.128499 CACTGTTTCACCATCCTAGATCTCT 59.872 44.000 0.00 0.00 0.00 3.10
86 87 5.362430 ACTGTTTCACCATCCTAGATCTCTC 59.638 44.000 0.00 0.00 0.00 3.20
87 88 5.523588 TGTTTCACCATCCTAGATCTCTCT 58.476 41.667 0.00 0.00 35.39 3.10
88 89 5.362143 TGTTTCACCATCCTAGATCTCTCTG 59.638 44.000 0.00 0.00 32.66 3.35
89 90 5.394562 TTCACCATCCTAGATCTCTCTGA 57.605 43.478 0.00 0.00 32.66 3.27
90 91 4.724399 TCACCATCCTAGATCTCTCTGAC 58.276 47.826 0.00 0.00 32.66 3.51
91 92 4.166919 TCACCATCCTAGATCTCTCTGACA 59.833 45.833 0.00 0.00 32.66 3.58
92 93 4.278170 CACCATCCTAGATCTCTCTGACAC 59.722 50.000 0.00 0.00 32.66 3.67
93 94 4.167892 ACCATCCTAGATCTCTCTGACACT 59.832 45.833 0.00 0.00 32.66 3.55
94 95 5.139727 CCATCCTAGATCTCTCTGACACTT 58.860 45.833 0.00 0.00 32.66 3.16
95 96 5.598005 CCATCCTAGATCTCTCTGACACTTT 59.402 44.000 0.00 0.00 32.66 2.66
96 97 6.098124 CCATCCTAGATCTCTCTGACACTTTT 59.902 42.308 0.00 0.00 32.66 2.27
97 98 6.522625 TCCTAGATCTCTCTGACACTTTTG 57.477 41.667 0.00 0.00 32.66 2.44
98 99 6.013379 TCCTAGATCTCTCTGACACTTTTGT 58.987 40.000 0.00 0.00 33.83 2.83
99 100 6.495181 TCCTAGATCTCTCTGACACTTTTGTT 59.505 38.462 0.00 0.00 32.26 2.83
100 101 7.015682 TCCTAGATCTCTCTGACACTTTTGTTT 59.984 37.037 0.00 0.00 32.26 2.83
101 102 7.659390 CCTAGATCTCTCTGACACTTTTGTTTT 59.341 37.037 0.00 0.00 32.26 2.43
102 103 7.256756 AGATCTCTCTGACACTTTTGTTTTG 57.743 36.000 0.00 0.00 35.47 2.44
103 104 5.235305 TCTCTCTGACACTTTTGTTTTGC 57.765 39.130 0.00 0.00 35.47 3.68
104 105 4.943705 TCTCTCTGACACTTTTGTTTTGCT 59.056 37.500 0.00 0.00 35.47 3.91
105 106 5.065218 TCTCTCTGACACTTTTGTTTTGCTC 59.935 40.000 0.00 0.00 35.47 4.26
106 107 4.699735 TCTCTGACACTTTTGTTTTGCTCA 59.300 37.500 0.00 0.00 35.47 4.26
107 108 5.357878 TCTCTGACACTTTTGTTTTGCTCAT 59.642 36.000 0.00 0.00 35.47 2.90
108 109 5.964758 TCTGACACTTTTGTTTTGCTCATT 58.035 33.333 0.00 0.00 35.47 2.57
109 110 5.806502 TCTGACACTTTTGTTTTGCTCATTG 59.193 36.000 0.00 0.00 35.47 2.82
110 111 4.329528 TGACACTTTTGTTTTGCTCATTGC 59.670 37.500 0.00 0.00 35.47 3.56
111 112 4.252073 ACACTTTTGTTTTGCTCATTGCA 58.748 34.783 0.00 0.00 41.13 4.08
126 127 7.169035 GCTCATTGCAAACCATGTAAATATG 57.831 36.000 1.71 0.00 42.31 1.78
127 128 6.292488 GCTCATTGCAAACCATGTAAATATGC 60.292 38.462 1.71 0.00 42.31 3.14
128 129 6.047870 TCATTGCAAACCATGTAAATATGCC 58.952 36.000 1.71 0.00 37.18 4.40
129 130 5.411831 TTGCAAACCATGTAAATATGCCA 57.588 34.783 0.00 0.00 30.10 4.92
130 131 5.008619 TGCAAACCATGTAAATATGCCAG 57.991 39.130 0.00 0.00 0.00 4.85
131 132 4.708909 TGCAAACCATGTAAATATGCCAGA 59.291 37.500 0.00 0.00 0.00 3.86
132 133 5.186603 TGCAAACCATGTAAATATGCCAGAA 59.813 36.000 0.00 0.00 0.00 3.02
133 134 6.127111 TGCAAACCATGTAAATATGCCAGAAT 60.127 34.615 0.00 0.00 0.00 2.40
134 135 6.762661 GCAAACCATGTAAATATGCCAGAATT 59.237 34.615 0.00 0.00 0.00 2.17
135 136 7.254522 GCAAACCATGTAAATATGCCAGAATTG 60.255 37.037 0.00 0.00 0.00 2.32
136 137 7.422465 AACCATGTAAATATGCCAGAATTGT 57.578 32.000 0.00 0.00 0.00 2.71
137 138 8.532186 AACCATGTAAATATGCCAGAATTGTA 57.468 30.769 0.00 0.00 0.00 2.41
138 139 7.940850 ACCATGTAAATATGCCAGAATTGTAC 58.059 34.615 0.00 0.00 0.00 2.90
139 140 7.779798 ACCATGTAAATATGCCAGAATTGTACT 59.220 33.333 0.00 0.00 0.00 2.73
140 141 8.077991 CCATGTAAATATGCCAGAATTGTACTG 58.922 37.037 0.00 0.00 35.43 2.74
141 142 7.026631 TGTAAATATGCCAGAATTGTACTGC 57.973 36.000 0.00 0.00 34.47 4.40
142 143 6.828273 TGTAAATATGCCAGAATTGTACTGCT 59.172 34.615 0.00 0.00 34.47 4.24
143 144 7.990314 TGTAAATATGCCAGAATTGTACTGCTA 59.010 33.333 0.00 0.00 34.47 3.49
144 145 7.502120 AAATATGCCAGAATTGTACTGCTAG 57.498 36.000 0.00 0.00 34.47 3.42
145 146 3.266510 TGCCAGAATTGTACTGCTAGG 57.733 47.619 0.00 0.00 34.47 3.02
146 147 2.092968 TGCCAGAATTGTACTGCTAGGG 60.093 50.000 0.00 0.00 34.47 3.53
147 148 2.746472 GCCAGAATTGTACTGCTAGGGG 60.746 54.545 0.00 0.00 34.47 4.79
148 149 2.158755 CCAGAATTGTACTGCTAGGGGG 60.159 54.545 0.00 0.00 34.47 5.40
174 175 5.367945 GTATCAAACCAAGTATCCTCCCA 57.632 43.478 0.00 0.00 0.00 4.37
175 176 4.946160 ATCAAACCAAGTATCCTCCCAA 57.054 40.909 0.00 0.00 0.00 4.12
176 177 4.733077 TCAAACCAAGTATCCTCCCAAA 57.267 40.909 0.00 0.00 0.00 3.28
177 178 5.068215 TCAAACCAAGTATCCTCCCAAAA 57.932 39.130 0.00 0.00 0.00 2.44
178 179 4.830600 TCAAACCAAGTATCCTCCCAAAAC 59.169 41.667 0.00 0.00 0.00 2.43
179 180 3.451402 ACCAAGTATCCTCCCAAAACC 57.549 47.619 0.00 0.00 0.00 3.27
180 181 2.993863 ACCAAGTATCCTCCCAAAACCT 59.006 45.455 0.00 0.00 0.00 3.50
181 182 4.180723 ACCAAGTATCCTCCCAAAACCTA 58.819 43.478 0.00 0.00 0.00 3.08
182 183 4.604490 ACCAAGTATCCTCCCAAAACCTAA 59.396 41.667 0.00 0.00 0.00 2.69
183 184 4.948004 CCAAGTATCCTCCCAAAACCTAAC 59.052 45.833 0.00 0.00 0.00 2.34
184 185 4.857130 AGTATCCTCCCAAAACCTAACC 57.143 45.455 0.00 0.00 0.00 2.85
185 186 4.445564 AGTATCCTCCCAAAACCTAACCT 58.554 43.478 0.00 0.00 0.00 3.50
186 187 4.856182 AGTATCCTCCCAAAACCTAACCTT 59.144 41.667 0.00 0.00 0.00 3.50
187 188 6.034003 AGTATCCTCCCAAAACCTAACCTTA 58.966 40.000 0.00 0.00 0.00 2.69
188 189 6.681541 AGTATCCTCCCAAAACCTAACCTTAT 59.318 38.462 0.00 0.00 0.00 1.73
189 190 5.446260 TCCTCCCAAAACCTAACCTTATC 57.554 43.478 0.00 0.00 0.00 1.75
190 191 5.105853 TCCTCCCAAAACCTAACCTTATCT 58.894 41.667 0.00 0.00 0.00 1.98
260 261 3.275617 ACAAAGCAAGGTGTGTACTCA 57.724 42.857 0.00 0.00 0.00 3.41
285 286 7.397892 TGTGAGAAATTGTTTGTTTCCACTA 57.602 32.000 14.87 5.74 37.48 2.74
337 339 6.769822 TGAAGGTTGGTTATTTGGTAACGTAA 59.230 34.615 0.00 0.00 42.95 3.18
360 362 1.025812 ATGGGAGTGTCGAGATCGTC 58.974 55.000 1.70 0.00 40.80 4.20
425 427 8.288208 AGTCGATATAATTAGAGTGTTGGTACG 58.712 37.037 0.00 0.00 0.00 3.67
475 477 8.990163 AAAGAGAACAAAAGGATTTGGTAGTA 57.010 30.769 6.29 0.00 42.59 1.82
476 478 7.981102 AGAGAACAAAAGGATTTGGTAGTAC 57.019 36.000 6.29 0.00 42.59 2.73
477 479 7.746703 AGAGAACAAAAGGATTTGGTAGTACT 58.253 34.615 0.00 0.00 42.59 2.73
478 480 7.878644 AGAGAACAAAAGGATTTGGTAGTACTC 59.121 37.037 0.00 2.93 42.59 2.59
479 481 6.940867 AGAACAAAAGGATTTGGTAGTACTCC 59.059 38.462 0.00 1.20 42.59 3.85
480 482 5.567430 ACAAAAGGATTTGGTAGTACTCCC 58.433 41.667 0.00 0.00 41.33 4.30
481 483 5.312443 ACAAAAGGATTTGGTAGTACTCCCT 59.688 40.000 6.02 0.00 41.33 4.20
482 484 5.695424 AAAGGATTTGGTAGTACTCCCTC 57.305 43.478 6.02 0.00 36.60 4.30
483 485 3.655384 AGGATTTGGTAGTACTCCCTCC 58.345 50.000 6.02 4.74 0.00 4.30
484 486 2.364647 GGATTTGGTAGTACTCCCTCCG 59.635 54.545 6.02 0.00 0.00 4.63
485 487 2.610438 TTTGGTAGTACTCCCTCCGT 57.390 50.000 6.02 0.00 0.00 4.69
486 488 2.610438 TTGGTAGTACTCCCTCCGTT 57.390 50.000 6.02 0.00 0.00 4.44
487 489 2.134789 TGGTAGTACTCCCTCCGTTC 57.865 55.000 6.02 0.00 0.00 3.95
488 490 1.341383 TGGTAGTACTCCCTCCGTTCC 60.341 57.143 6.02 0.00 0.00 3.62
489 491 1.064091 GGTAGTACTCCCTCCGTTCCT 60.064 57.143 0.00 0.00 0.00 3.36
490 492 2.173569 GGTAGTACTCCCTCCGTTCCTA 59.826 54.545 0.00 0.00 0.00 2.94
491 493 3.372025 GGTAGTACTCCCTCCGTTCCTAA 60.372 52.174 0.00 0.00 0.00 2.69
492 494 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
493 495 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
494 496 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
495 497 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
496 498 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
497 499 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
498 500 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
499 501 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
500 502 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
501 503 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
502 504 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
503 505 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
504 506 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
505 507 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
532 534 9.691362 AAACATTTCAAATGGACTACAACATAC 57.309 29.630 14.70 0.00 0.00 2.39
533 535 8.402798 ACATTTCAAATGGACTACAACATACA 57.597 30.769 14.70 0.00 0.00 2.29
534 536 8.514594 ACATTTCAAATGGACTACAACATACAG 58.485 33.333 14.70 0.00 0.00 2.74
535 537 8.729756 CATTTCAAATGGACTACAACATACAGA 58.270 33.333 1.73 0.00 0.00 3.41
536 538 8.862325 TTTCAAATGGACTACAACATACAGAT 57.138 30.769 0.00 0.00 0.00 2.90
537 539 7.848223 TCAAATGGACTACAACATACAGATG 57.152 36.000 0.00 0.00 39.16 2.90
539 541 8.536175 TCAAATGGACTACAACATACAGATGTA 58.464 33.333 0.00 0.00 45.93 2.29
540 542 9.330063 CAAATGGACTACAACATACAGATGTAT 57.670 33.333 0.00 0.00 45.93 2.29
580 582 5.618561 GTGTAGTTCACTTATTTTGCTCCG 58.381 41.667 0.00 0.00 43.13 4.63
581 583 5.178809 GTGTAGTTCACTTATTTTGCTCCGT 59.821 40.000 0.00 0.00 43.13 4.69
582 584 6.366877 GTGTAGTTCACTTATTTTGCTCCGTA 59.633 38.462 0.00 0.00 43.13 4.02
583 585 7.064253 GTGTAGTTCACTTATTTTGCTCCGTAT 59.936 37.037 0.00 0.00 43.13 3.06
584 586 6.422776 AGTTCACTTATTTTGCTCCGTATG 57.577 37.500 0.00 0.00 0.00 2.39
585 587 5.938125 AGTTCACTTATTTTGCTCCGTATGT 59.062 36.000 0.00 0.00 0.00 2.29
586 588 7.101054 AGTTCACTTATTTTGCTCCGTATGTA 58.899 34.615 0.00 0.00 0.00 2.29
587 589 7.277981 AGTTCACTTATTTTGCTCCGTATGTAG 59.722 37.037 0.00 0.00 0.00 2.74
588 590 6.636705 TCACTTATTTTGCTCCGTATGTAGT 58.363 36.000 0.00 0.00 0.00 2.73
589 591 6.755141 TCACTTATTTTGCTCCGTATGTAGTC 59.245 38.462 0.00 0.00 0.00 2.59
590 592 6.533723 CACTTATTTTGCTCCGTATGTAGTCA 59.466 38.462 0.00 0.00 0.00 3.41
591 593 6.534079 ACTTATTTTGCTCCGTATGTAGTCAC 59.466 38.462 0.00 0.00 0.00 3.67
592 594 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
593 595 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
594 596 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
595 597 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
596 598 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
597 599 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
598 600 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
599 601 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
600 602 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
601 603 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
602 604 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
603 605 6.100004 CGTATGTAGTCACTTGTTGGAATCT 58.900 40.000 0.00 0.00 0.00 2.40
604 606 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
605 607 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
606 608 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
607 609 7.297936 TGTAGTCACTTGTTGGAATCTCTAA 57.702 36.000 0.00 0.00 0.00 2.10
608 610 7.732025 TGTAGTCACTTGTTGGAATCTCTAAA 58.268 34.615 0.00 0.00 0.00 1.85
609 611 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
610 612 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
633 635 7.964666 AAAATTATATTTGGAAACGGAGGGA 57.035 32.000 0.00 0.00 0.00 4.20
634 636 7.582667 AAATTATATTTGGAAACGGAGGGAG 57.417 36.000 0.00 0.00 0.00 4.30
635 637 2.413310 TATTTGGAAACGGAGGGAGC 57.587 50.000 0.00 0.00 0.00 4.70
813 820 6.757237 TCACATCCAACTTTGTAAATGCATT 58.243 32.000 5.99 5.99 0.00 3.56
824 831 8.806146 ACTTTGTAAATGCATTATCTCCAAAGT 58.194 29.630 27.45 27.45 39.62 2.66
907 915 3.285484 GCCTCCTTTGATCATGACATGT 58.715 45.455 14.98 0.00 0.00 3.21
1034 1042 1.892474 AGCGCTCAAATTTGGCCTAAA 59.108 42.857 17.90 3.33 0.00 1.85
1153 1162 1.136774 GCGGCAATTTTCGAGGACC 59.863 57.895 0.00 0.00 0.00 4.46
1177 1186 5.473039 GCTTTCACTATGCCTGTGATTTTT 58.527 37.500 4.74 0.00 42.95 1.94
1323 1332 8.462811 ATGATACTCATAGACGATGTAATGGTC 58.537 37.037 0.00 0.00 39.75 4.02
1408 1417 3.428413 AGGGCATAACCGTTGTTTAGT 57.572 42.857 0.00 0.00 40.62 2.24
1419 1428 6.235231 ACCGTTGTTTAGTGATCCTATCAT 57.765 37.500 0.00 0.00 42.04 2.45
1442 1451 8.149647 TCATGTGTAATGCTTTTCTCCAAAAAT 58.850 29.630 0.00 0.00 30.90 1.82
1474 1497 5.537188 GTGTGCCAAATCAAATAGTGGAAA 58.463 37.500 0.00 0.00 32.54 3.13
1517 1543 6.005066 TCTATGACATGTCCCAAATCACAT 57.995 37.500 22.85 9.42 33.29 3.21
1599 1625 7.423844 TGACATGTCCTAAATCACATAGTCT 57.576 36.000 22.85 0.00 34.98 3.24
1637 1663 4.278170 AGACGTGATGCTTTCATCCAAAAA 59.722 37.500 0.00 0.00 46.60 1.94
1800 2079 8.094798 TGAAACAGCGTATTCTTCAAATAGTT 57.905 30.769 0.00 0.00 0.00 2.24
1912 2191 6.983890 CCTTCTCTATTTAGGCTCTCAAACTC 59.016 42.308 0.00 0.00 0.00 3.01
1918 2197 8.688151 TCTATTTAGGCTCTCAAACTCTTAGAC 58.312 37.037 0.00 0.00 0.00 2.59
1931 2210 8.107729 TCAAACTCTTAGACTAGTCATAGTGGA 58.892 37.037 24.44 16.77 42.46 4.02
1932 2211 8.740906 CAAACTCTTAGACTAGTCATAGTGGAA 58.259 37.037 24.44 6.13 42.46 3.53
2161 2441 4.394920 ACGTGGCATACATTTTCCTACTTG 59.605 41.667 0.00 0.00 0.00 3.16
2228 2508 7.615365 AGGTGAAATCATGAATAAAGTTAGCCA 59.385 33.333 0.00 0.00 0.00 4.75
2299 2579 7.360353 GCCTTAACGGTAGTAGTTTTAAGTTGG 60.360 40.741 0.00 0.00 33.42 3.77
2302 2582 3.368843 CGGTAGTAGTTTTAAGTTGGGCG 59.631 47.826 0.00 0.00 0.00 6.13
2303 2583 4.568956 GGTAGTAGTTTTAAGTTGGGCGA 58.431 43.478 0.00 0.00 0.00 5.54
2304 2584 4.996758 GGTAGTAGTTTTAAGTTGGGCGAA 59.003 41.667 0.00 0.00 0.00 4.70
2305 2585 5.121298 GGTAGTAGTTTTAAGTTGGGCGAAG 59.879 44.000 0.00 0.00 0.00 3.79
2306 2586 4.711399 AGTAGTTTTAAGTTGGGCGAAGT 58.289 39.130 0.00 0.00 0.00 3.01
2307 2587 5.857268 AGTAGTTTTAAGTTGGGCGAAGTA 58.143 37.500 0.00 0.00 0.00 2.24
2308 2588 5.930569 AGTAGTTTTAAGTTGGGCGAAGTAG 59.069 40.000 0.00 0.00 0.00 2.57
2309 2589 4.711399 AGTTTTAAGTTGGGCGAAGTAGT 58.289 39.130 0.00 0.00 0.00 2.73
2310 2590 5.857268 AGTTTTAAGTTGGGCGAAGTAGTA 58.143 37.500 0.00 0.00 0.00 1.82
2311 2591 5.930569 AGTTTTAAGTTGGGCGAAGTAGTAG 59.069 40.000 0.00 0.00 0.00 2.57
2312 2592 5.726980 TTTAAGTTGGGCGAAGTAGTAGA 57.273 39.130 0.00 0.00 0.00 2.59
2313 2593 5.927281 TTAAGTTGGGCGAAGTAGTAGAT 57.073 39.130 0.00 0.00 0.00 1.98
2314 2594 3.802948 AGTTGGGCGAAGTAGTAGATG 57.197 47.619 0.00 0.00 0.00 2.90
2315 2595 3.362706 AGTTGGGCGAAGTAGTAGATGA 58.637 45.455 0.00 0.00 0.00 2.92
2316 2596 3.381908 AGTTGGGCGAAGTAGTAGATGAG 59.618 47.826 0.00 0.00 0.00 2.90
2317 2597 3.014304 TGGGCGAAGTAGTAGATGAGT 57.986 47.619 0.00 0.00 0.00 3.41
2318 2598 3.362706 TGGGCGAAGTAGTAGATGAGTT 58.637 45.455 0.00 0.00 0.00 3.01
2319 2599 3.380637 TGGGCGAAGTAGTAGATGAGTTC 59.619 47.826 0.00 0.00 0.00 3.01
2320 2600 3.243468 GGGCGAAGTAGTAGATGAGTTCC 60.243 52.174 0.00 0.00 0.00 3.62
2321 2601 3.548415 GGCGAAGTAGTAGATGAGTTCCG 60.548 52.174 0.00 0.00 0.00 4.30
2322 2602 3.548415 GCGAAGTAGTAGATGAGTTCCGG 60.548 52.174 0.00 0.00 0.00 5.14
2323 2603 3.548415 CGAAGTAGTAGATGAGTTCCGGC 60.548 52.174 0.00 0.00 0.00 6.13
2324 2604 3.014304 AGTAGTAGATGAGTTCCGGCA 57.986 47.619 0.00 0.00 0.00 5.69
2325 2605 2.952978 AGTAGTAGATGAGTTCCGGCAG 59.047 50.000 0.00 0.00 0.00 4.85
2326 2606 0.461961 AGTAGATGAGTTCCGGCAGC 59.538 55.000 0.00 0.00 0.00 5.25
2327 2607 0.175760 GTAGATGAGTTCCGGCAGCA 59.824 55.000 0.00 0.00 0.00 4.41
2328 2608 0.175760 TAGATGAGTTCCGGCAGCAC 59.824 55.000 0.00 0.00 0.00 4.40
2329 2609 2.434884 ATGAGTTCCGGCAGCACG 60.435 61.111 0.00 0.00 0.00 5.34
2330 2610 2.835701 GATGAGTTCCGGCAGCACGA 62.836 60.000 0.00 0.00 35.47 4.35
2331 2611 3.112709 GAGTTCCGGCAGCACGAC 61.113 66.667 0.00 0.00 35.47 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.130118 GGAACAATGGTATCAGCTGGTAG 58.870 47.826 15.13 0.90 0.00 3.18
1 2 3.521531 TGGAACAATGGTATCAGCTGGTA 59.478 43.478 15.13 8.60 31.92 3.25
2 3 2.308570 TGGAACAATGGTATCAGCTGGT 59.691 45.455 15.13 9.93 31.92 4.00
3 4 3.003394 TGGAACAATGGTATCAGCTGG 57.997 47.619 15.13 0.00 31.92 4.85
35 36 9.614792 GAAGCTAACTATTAGGAGGAATTTTGA 57.385 33.333 0.00 0.00 33.80 2.69
36 37 9.396022 TGAAGCTAACTATTAGGAGGAATTTTG 57.604 33.333 0.00 0.00 33.80 2.44
37 38 9.397280 GTGAAGCTAACTATTAGGAGGAATTTT 57.603 33.333 0.00 0.00 33.80 1.82
38 39 8.773216 AGTGAAGCTAACTATTAGGAGGAATTT 58.227 33.333 0.19 0.00 33.80 1.82
39 40 8.207545 CAGTGAAGCTAACTATTAGGAGGAATT 58.792 37.037 1.86 0.00 33.80 2.17
40 41 7.345914 ACAGTGAAGCTAACTATTAGGAGGAAT 59.654 37.037 0.00 0.00 33.80 3.01
41 42 6.668283 ACAGTGAAGCTAACTATTAGGAGGAA 59.332 38.462 0.00 0.00 33.80 3.36
42 43 6.195700 ACAGTGAAGCTAACTATTAGGAGGA 58.804 40.000 0.00 0.00 33.80 3.71
43 44 6.472686 ACAGTGAAGCTAACTATTAGGAGG 57.527 41.667 0.00 0.00 33.80 4.30
44 45 8.035394 TGAAACAGTGAAGCTAACTATTAGGAG 58.965 37.037 0.00 0.00 33.80 3.69
45 46 7.817962 GTGAAACAGTGAAGCTAACTATTAGGA 59.182 37.037 0.00 0.00 36.32 2.94
46 47 7.064728 GGTGAAACAGTGAAGCTAACTATTAGG 59.935 40.741 0.00 0.00 39.98 2.69
47 48 7.602644 TGGTGAAACAGTGAAGCTAACTATTAG 59.397 37.037 0.00 0.00 39.98 1.73
48 49 7.446769 TGGTGAAACAGTGAAGCTAACTATTA 58.553 34.615 0.00 0.00 39.98 0.98
49 50 6.296026 TGGTGAAACAGTGAAGCTAACTATT 58.704 36.000 0.00 0.00 39.98 1.73
50 51 5.865085 TGGTGAAACAGTGAAGCTAACTAT 58.135 37.500 0.00 0.00 39.98 2.12
51 52 5.284861 TGGTGAAACAGTGAAGCTAACTA 57.715 39.130 0.00 0.00 39.98 2.24
52 53 4.150897 TGGTGAAACAGTGAAGCTAACT 57.849 40.909 0.00 0.00 39.98 2.24
53 54 4.083271 GGATGGTGAAACAGTGAAGCTAAC 60.083 45.833 0.00 0.00 39.98 2.34
54 55 4.072131 GGATGGTGAAACAGTGAAGCTAA 58.928 43.478 0.00 0.00 39.98 3.09
55 56 3.327757 AGGATGGTGAAACAGTGAAGCTA 59.672 43.478 0.00 0.00 39.98 3.32
56 57 2.107204 AGGATGGTGAAACAGTGAAGCT 59.893 45.455 0.00 0.00 39.98 3.74
57 58 2.508526 AGGATGGTGAAACAGTGAAGC 58.491 47.619 0.00 0.00 39.98 3.86
58 59 5.152623 TCTAGGATGGTGAAACAGTGAAG 57.847 43.478 0.00 0.00 39.98 3.02
59 60 5.485353 AGATCTAGGATGGTGAAACAGTGAA 59.515 40.000 0.00 0.00 39.98 3.18
60 61 5.026121 AGATCTAGGATGGTGAAACAGTGA 58.974 41.667 0.00 0.00 39.98 3.41
61 62 5.128499 AGAGATCTAGGATGGTGAAACAGTG 59.872 44.000 0.00 0.00 39.98 3.66
62 63 5.276440 AGAGATCTAGGATGGTGAAACAGT 58.724 41.667 0.00 0.00 39.98 3.55
63 64 5.598005 AGAGAGATCTAGGATGGTGAAACAG 59.402 44.000 0.00 0.00 39.98 3.16
64 65 5.362143 CAGAGAGATCTAGGATGGTGAAACA 59.638 44.000 0.00 0.00 39.98 2.83
65 66 5.596361 TCAGAGAGATCTAGGATGGTGAAAC 59.404 44.000 0.00 0.00 0.00 2.78
66 67 5.596361 GTCAGAGAGATCTAGGATGGTGAAA 59.404 44.000 0.00 0.00 0.00 2.69
67 68 5.136828 GTCAGAGAGATCTAGGATGGTGAA 58.863 45.833 0.00 0.00 0.00 3.18
68 69 4.166919 TGTCAGAGAGATCTAGGATGGTGA 59.833 45.833 0.00 0.00 0.00 4.02
69 70 4.278170 GTGTCAGAGAGATCTAGGATGGTG 59.722 50.000 0.00 0.00 0.00 4.17
70 71 4.167892 AGTGTCAGAGAGATCTAGGATGGT 59.832 45.833 0.00 0.00 0.00 3.55
71 72 4.728772 AGTGTCAGAGAGATCTAGGATGG 58.271 47.826 0.00 0.00 0.00 3.51
72 73 6.713762 AAAGTGTCAGAGAGATCTAGGATG 57.286 41.667 0.00 0.00 0.00 3.51
73 74 6.667414 ACAAAAGTGTCAGAGAGATCTAGGAT 59.333 38.462 0.00 0.00 29.49 3.24
74 75 6.013379 ACAAAAGTGTCAGAGAGATCTAGGA 58.987 40.000 0.00 0.00 29.49 2.94
75 76 6.279513 ACAAAAGTGTCAGAGAGATCTAGG 57.720 41.667 0.00 0.00 29.49 3.02
76 77 8.494347 CAAAACAAAAGTGTCAGAGAGATCTAG 58.506 37.037 0.00 0.00 36.80 2.43
77 78 7.041780 GCAAAACAAAAGTGTCAGAGAGATCTA 60.042 37.037 0.00 0.00 36.80 1.98
78 79 6.238593 GCAAAACAAAAGTGTCAGAGAGATCT 60.239 38.462 0.00 0.00 36.80 2.75
79 80 5.911838 GCAAAACAAAAGTGTCAGAGAGATC 59.088 40.000 0.00 0.00 36.80 2.75
80 81 5.591877 AGCAAAACAAAAGTGTCAGAGAGAT 59.408 36.000 0.00 0.00 36.80 2.75
81 82 4.943705 AGCAAAACAAAAGTGTCAGAGAGA 59.056 37.500 0.00 0.00 36.80 3.10
82 83 5.163723 TGAGCAAAACAAAAGTGTCAGAGAG 60.164 40.000 0.00 0.00 36.80 3.20
83 84 4.699735 TGAGCAAAACAAAAGTGTCAGAGA 59.300 37.500 0.00 0.00 36.80 3.10
84 85 4.985413 TGAGCAAAACAAAAGTGTCAGAG 58.015 39.130 0.00 0.00 36.80 3.35
85 86 5.581126 ATGAGCAAAACAAAAGTGTCAGA 57.419 34.783 0.00 0.00 36.80 3.27
86 87 5.501252 GCAATGAGCAAAACAAAAGTGTCAG 60.501 40.000 0.00 0.00 44.79 3.51
87 88 4.329528 GCAATGAGCAAAACAAAAGTGTCA 59.670 37.500 0.00 0.00 44.79 3.58
88 89 4.825400 GCAATGAGCAAAACAAAAGTGTC 58.175 39.130 0.00 0.00 44.79 3.67
89 90 4.863152 GCAATGAGCAAAACAAAAGTGT 57.137 36.364 0.00 0.00 44.79 3.55
102 103 6.292488 GCATATTTACATGGTTTGCAATGAGC 60.292 38.462 0.00 0.00 45.96 4.26
103 104 6.201425 GGCATATTTACATGGTTTGCAATGAG 59.799 38.462 0.00 0.00 30.60 2.90
104 105 6.047870 GGCATATTTACATGGTTTGCAATGA 58.952 36.000 0.00 0.00 30.60 2.57
105 106 5.816258 TGGCATATTTACATGGTTTGCAATG 59.184 36.000 0.00 0.00 32.30 2.82
106 107 5.987098 TGGCATATTTACATGGTTTGCAAT 58.013 33.333 0.00 0.00 0.00 3.56
107 108 5.186603 TCTGGCATATTTACATGGTTTGCAA 59.813 36.000 0.00 0.00 0.00 4.08
108 109 4.708909 TCTGGCATATTTACATGGTTTGCA 59.291 37.500 0.00 0.00 0.00 4.08
109 110 5.261209 TCTGGCATATTTACATGGTTTGC 57.739 39.130 0.00 0.00 0.00 3.68
110 111 7.765360 ACAATTCTGGCATATTTACATGGTTTG 59.235 33.333 0.00 0.00 0.00 2.93
111 112 7.850193 ACAATTCTGGCATATTTACATGGTTT 58.150 30.769 0.00 0.00 0.00 3.27
112 113 7.422465 ACAATTCTGGCATATTTACATGGTT 57.578 32.000 0.00 0.00 0.00 3.67
113 114 7.779798 AGTACAATTCTGGCATATTTACATGGT 59.220 33.333 0.00 0.00 0.00 3.55
114 115 8.077991 CAGTACAATTCTGGCATATTTACATGG 58.922 37.037 0.00 0.00 0.00 3.66
115 116 7.592533 GCAGTACAATTCTGGCATATTTACATG 59.407 37.037 0.00 0.00 33.98 3.21
116 117 7.503566 AGCAGTACAATTCTGGCATATTTACAT 59.496 33.333 0.00 0.00 33.98 2.29
117 118 6.828273 AGCAGTACAATTCTGGCATATTTACA 59.172 34.615 0.00 0.00 33.98 2.41
118 119 7.264373 AGCAGTACAATTCTGGCATATTTAC 57.736 36.000 0.00 0.00 33.98 2.01
119 120 7.661437 CCTAGCAGTACAATTCTGGCATATTTA 59.339 37.037 0.00 0.00 33.98 1.40
120 121 6.488006 CCTAGCAGTACAATTCTGGCATATTT 59.512 38.462 0.00 0.00 33.98 1.40
121 122 6.000219 CCTAGCAGTACAATTCTGGCATATT 59.000 40.000 0.00 0.00 33.98 1.28
122 123 5.513788 CCCTAGCAGTACAATTCTGGCATAT 60.514 44.000 0.00 0.00 33.98 1.78
123 124 4.202357 CCCTAGCAGTACAATTCTGGCATA 60.202 45.833 0.00 0.00 33.98 3.14
124 125 3.434167 CCCTAGCAGTACAATTCTGGCAT 60.434 47.826 0.00 0.00 33.98 4.40
125 126 2.092968 CCCTAGCAGTACAATTCTGGCA 60.093 50.000 0.00 0.00 33.98 4.92
126 127 2.565841 CCCTAGCAGTACAATTCTGGC 58.434 52.381 0.00 0.00 33.98 4.85
127 128 2.158755 CCCCCTAGCAGTACAATTCTGG 60.159 54.545 0.00 0.00 33.98 3.86
128 129 3.199880 CCCCCTAGCAGTACAATTCTG 57.800 52.381 0.00 0.00 36.18 3.02
164 165 4.857130 AGGTTAGGTTTTGGGAGGATAC 57.143 45.455 0.00 0.00 0.00 2.24
165 166 6.912561 AGATAAGGTTAGGTTTTGGGAGGATA 59.087 38.462 0.00 0.00 0.00 2.59
166 167 5.736616 AGATAAGGTTAGGTTTTGGGAGGAT 59.263 40.000 0.00 0.00 0.00 3.24
167 168 5.105853 AGATAAGGTTAGGTTTTGGGAGGA 58.894 41.667 0.00 0.00 0.00 3.71
168 169 5.452341 AGATAAGGTTAGGTTTTGGGAGG 57.548 43.478 0.00 0.00 0.00 4.30
169 170 6.152831 CCAAAGATAAGGTTAGGTTTTGGGAG 59.847 42.308 5.42 0.00 39.39 4.30
170 171 6.014012 CCAAAGATAAGGTTAGGTTTTGGGA 58.986 40.000 5.42 0.00 39.39 4.37
171 172 5.778241 ACCAAAGATAAGGTTAGGTTTTGGG 59.222 40.000 15.14 0.00 44.44 4.12
172 173 6.911250 ACCAAAGATAAGGTTAGGTTTTGG 57.089 37.500 10.57 10.57 45.21 3.28
175 176 9.816787 TGATTTACCAAAGATAAGGTTAGGTTT 57.183 29.630 0.00 0.00 39.31 3.27
176 177 9.990868 ATGATTTACCAAAGATAAGGTTAGGTT 57.009 29.630 0.00 0.00 39.31 3.50
177 178 9.628500 GATGATTTACCAAAGATAAGGTTAGGT 57.372 33.333 0.00 0.00 39.31 3.08
178 179 9.853177 AGATGATTTACCAAAGATAAGGTTAGG 57.147 33.333 0.00 0.00 39.31 2.69
187 188 9.851686 TGTTGCTATAGATGATTTACCAAAGAT 57.148 29.630 3.21 0.00 0.00 2.40
188 189 9.679661 TTGTTGCTATAGATGATTTACCAAAGA 57.320 29.630 3.21 0.00 0.00 2.52
189 190 9.941664 CTTGTTGCTATAGATGATTTACCAAAG 57.058 33.333 3.21 0.00 0.00 2.77
190 191 9.679661 TCTTGTTGCTATAGATGATTTACCAAA 57.320 29.630 3.21 0.00 0.00 3.28
231 232 2.890311 CACCTTGCTTTGTATCCAACCA 59.110 45.455 0.00 0.00 0.00 3.67
235 236 3.222173 ACACACCTTGCTTTGTATCCA 57.778 42.857 0.00 0.00 0.00 3.41
260 261 6.877236 AGTGGAAACAAACAATTTCTCACAT 58.123 32.000 15.23 4.88 46.06 3.21
285 286 6.000219 ACAGAAGTCATTTTGTCACAGCTAT 59.000 36.000 0.00 0.00 0.00 2.97
337 339 2.588620 GATCTCGACACTCCCATACCT 58.411 52.381 0.00 0.00 0.00 3.08
360 362 7.713968 CAAAGTCAATTTGCTCTCATTTTACG 58.286 34.615 0.00 0.00 41.77 3.18
475 477 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
476 478 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
477 479 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
478 480 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
479 481 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
506 508 9.691362 GTATGTTGTAGTCCATTTGAAATGTTT 57.309 29.630 15.93 4.63 0.00 2.83
507 509 8.855110 TGTATGTTGTAGTCCATTTGAAATGTT 58.145 29.630 15.93 4.95 0.00 2.71
508 510 8.402798 TGTATGTTGTAGTCCATTTGAAATGT 57.597 30.769 15.93 1.43 0.00 2.71
509 511 8.729756 TCTGTATGTTGTAGTCCATTTGAAATG 58.270 33.333 10.84 10.84 0.00 2.32
510 512 8.862325 TCTGTATGTTGTAGTCCATTTGAAAT 57.138 30.769 0.00 0.00 0.00 2.17
511 513 8.729756 CATCTGTATGTTGTAGTCCATTTGAAA 58.270 33.333 0.00 0.00 0.00 2.69
512 514 7.882791 ACATCTGTATGTTGTAGTCCATTTGAA 59.117 33.333 0.00 0.00 44.07 2.69
513 515 7.394016 ACATCTGTATGTTGTAGTCCATTTGA 58.606 34.615 0.00 0.00 44.07 2.69
514 516 7.615582 ACATCTGTATGTTGTAGTCCATTTG 57.384 36.000 0.00 0.00 44.07 2.32
558 560 5.302360 ACGGAGCAAAATAAGTGAACTACA 58.698 37.500 0.00 0.00 0.00 2.74
559 561 5.857822 ACGGAGCAAAATAAGTGAACTAC 57.142 39.130 0.00 0.00 0.00 2.73
560 562 7.101054 ACATACGGAGCAAAATAAGTGAACTA 58.899 34.615 0.00 0.00 0.00 2.24
561 563 5.938125 ACATACGGAGCAAAATAAGTGAACT 59.062 36.000 0.00 0.00 0.00 3.01
562 564 6.178239 ACATACGGAGCAAAATAAGTGAAC 57.822 37.500 0.00 0.00 0.00 3.18
563 565 7.101054 ACTACATACGGAGCAAAATAAGTGAA 58.899 34.615 0.00 0.00 0.00 3.18
564 566 6.636705 ACTACATACGGAGCAAAATAAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
565 567 6.533723 TGACTACATACGGAGCAAAATAAGTG 59.466 38.462 0.00 0.00 0.00 3.16
566 568 6.534079 GTGACTACATACGGAGCAAAATAAGT 59.466 38.462 0.00 0.00 0.00 2.24
567 569 6.757010 AGTGACTACATACGGAGCAAAATAAG 59.243 38.462 0.00 0.00 0.00 1.73
568 570 6.636705 AGTGACTACATACGGAGCAAAATAA 58.363 36.000 0.00 0.00 0.00 1.40
569 571 6.216801 AGTGACTACATACGGAGCAAAATA 57.783 37.500 0.00 0.00 0.00 1.40
570 572 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
571 573 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
572 574 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
573 575 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
574 576 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
575 577 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
576 578 4.082408 TCCAACAAGTGACTACATACGGAG 60.082 45.833 0.00 0.00 0.00 4.63
577 579 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
578 580 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
579 581 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
580 582 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
581 583 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
582 584 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
583 585 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
584 586 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
608 610 8.368962 TCCCTCCGTTTCCAAATATAATTTTT 57.631 30.769 0.00 0.00 0.00 1.94
609 611 7.417456 GCTCCCTCCGTTTCCAAATATAATTTT 60.417 37.037 0.00 0.00 0.00 1.82
610 612 6.040504 GCTCCCTCCGTTTCCAAATATAATTT 59.959 38.462 0.00 0.00 0.00 1.82
611 613 5.535030 GCTCCCTCCGTTTCCAAATATAATT 59.465 40.000 0.00 0.00 0.00 1.40
612 614 5.070685 GCTCCCTCCGTTTCCAAATATAAT 58.929 41.667 0.00 0.00 0.00 1.28
613 615 4.080243 TGCTCCCTCCGTTTCCAAATATAA 60.080 41.667 0.00 0.00 0.00 0.98
614 616 3.456644 TGCTCCCTCCGTTTCCAAATATA 59.543 43.478 0.00 0.00 0.00 0.86
615 617 2.241176 TGCTCCCTCCGTTTCCAAATAT 59.759 45.455 0.00 0.00 0.00 1.28
616 618 1.631388 TGCTCCCTCCGTTTCCAAATA 59.369 47.619 0.00 0.00 0.00 1.40
617 619 0.404040 TGCTCCCTCCGTTTCCAAAT 59.596 50.000 0.00 0.00 0.00 2.32
618 620 0.250727 CTGCTCCCTCCGTTTCCAAA 60.251 55.000 0.00 0.00 0.00 3.28
619 621 1.374947 CTGCTCCCTCCGTTTCCAA 59.625 57.895 0.00 0.00 0.00 3.53
620 622 0.543410 TACTGCTCCCTCCGTTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
621 623 0.831307 ATACTGCTCCCTCCGTTTCC 59.169 55.000 0.00 0.00 0.00 3.13
622 624 2.168728 AGAATACTGCTCCCTCCGTTTC 59.831 50.000 0.00 0.00 0.00 2.78
623 625 2.093447 CAGAATACTGCTCCCTCCGTTT 60.093 50.000 0.00 0.00 37.33 3.60
624 626 1.482593 CAGAATACTGCTCCCTCCGTT 59.517 52.381 0.00 0.00 37.33 4.44
625 627 1.115467 CAGAATACTGCTCCCTCCGT 58.885 55.000 0.00 0.00 37.33 4.69
626 628 1.115467 ACAGAATACTGCTCCCTCCG 58.885 55.000 0.00 0.00 46.95 4.63
627 629 2.034812 CGTACAGAATACTGCTCCCTCC 59.965 54.545 0.00 0.00 46.95 4.30
628 630 2.688958 ACGTACAGAATACTGCTCCCTC 59.311 50.000 0.00 0.00 46.95 4.30
629 631 2.736347 ACGTACAGAATACTGCTCCCT 58.264 47.619 0.00 0.00 46.95 4.20
630 632 4.850347 ATACGTACAGAATACTGCTCCC 57.150 45.455 0.00 0.00 46.95 4.30
631 633 9.903682 TTAATTATACGTACAGAATACTGCTCC 57.096 33.333 0.00 0.00 46.95 4.70
728 735 4.021016 AGTTAAAGTGGTCGAAGATGCTCT 60.021 41.667 0.00 0.00 40.67 4.09
729 736 4.246458 AGTTAAAGTGGTCGAAGATGCTC 58.754 43.478 0.00 0.00 40.67 4.26
730 737 4.246458 GAGTTAAAGTGGTCGAAGATGCT 58.754 43.478 0.00 0.00 40.67 3.79
731 738 3.994392 TGAGTTAAAGTGGTCGAAGATGC 59.006 43.478 0.00 0.00 40.67 3.91
732 739 5.470368 TCTGAGTTAAAGTGGTCGAAGATG 58.530 41.667 0.00 0.00 40.67 2.90
733 740 5.723672 TCTGAGTTAAAGTGGTCGAAGAT 57.276 39.130 0.00 0.00 40.67 2.40
734 741 5.524971 TTCTGAGTTAAAGTGGTCGAAGA 57.475 39.130 0.00 0.00 0.00 2.87
735 742 5.389935 GCATTCTGAGTTAAAGTGGTCGAAG 60.390 44.000 0.00 0.00 0.00 3.79
736 743 4.451096 GCATTCTGAGTTAAAGTGGTCGAA 59.549 41.667 0.00 0.00 0.00 3.71
737 744 3.994392 GCATTCTGAGTTAAAGTGGTCGA 59.006 43.478 0.00 0.00 0.00 4.20
738 745 3.745975 TGCATTCTGAGTTAAAGTGGTCG 59.254 43.478 0.00 0.00 0.00 4.79
739 746 5.689383 TTGCATTCTGAGTTAAAGTGGTC 57.311 39.130 0.00 0.00 0.00 4.02
740 747 6.265196 TGATTTGCATTCTGAGTTAAAGTGGT 59.735 34.615 0.00 0.00 0.00 4.16
741 748 6.680810 TGATTTGCATTCTGAGTTAAAGTGG 58.319 36.000 0.00 0.00 0.00 4.00
742 749 8.578308 TTTGATTTGCATTCTGAGTTAAAGTG 57.422 30.769 0.00 0.00 0.00 3.16
813 820 5.414789 TTTCATGGACGACTTTGGAGATA 57.585 39.130 0.00 0.00 0.00 1.98
824 831 0.610785 GCCCCCTTTTTCATGGACGA 60.611 55.000 0.00 0.00 0.00 4.20
907 915 1.869824 GCCCCCACCATACCCTTCAA 61.870 60.000 0.00 0.00 0.00 2.69
1017 1025 3.996363 CCAGTTTTAGGCCAAATTTGAGC 59.004 43.478 19.86 18.79 0.00 4.26
1153 1162 1.725641 TCACAGGCATAGTGAAAGCG 58.274 50.000 5.20 0.00 42.57 4.68
1177 1186 8.996024 TTACAATGTTCGAATCTAGTCATGAA 57.004 30.769 0.00 0.00 0.00 2.57
1408 1417 7.994911 AGAAAAGCATTACACATGATAGGATCA 59.005 33.333 0.00 0.00 44.55 2.92
1419 1428 7.254727 GCAATTTTTGGAGAAAAGCATTACACA 60.255 33.333 0.00 0.00 32.62 3.72
1442 1451 0.672889 ATTTGGCACACGTCATGCAA 59.327 45.000 19.95 8.73 45.27 4.08
1474 1497 9.362151 TCATAGAGTTTTTGGACCAATAAGTTT 57.638 29.630 16.12 13.63 0.00 2.66
1497 1520 3.956199 GGATGTGATTTGGGACATGTCAT 59.044 43.478 26.47 11.86 39.30 3.06
1517 1543 1.684450 TCTATGCTATTCAACGCGGGA 59.316 47.619 12.47 4.53 0.00 5.14
1553 1579 6.015918 TCATGGAGGTTTTGGACAAATATGT 58.984 36.000 0.00 0.00 44.25 2.29
1637 1663 6.539464 TCTTGGACAAAAACACTACACGTATT 59.461 34.615 0.00 0.00 0.00 1.89
1638 1664 6.018507 GTCTTGGACAAAAACACTACACGTAT 60.019 38.462 0.00 0.00 32.09 3.06
1639 1665 5.291614 GTCTTGGACAAAAACACTACACGTA 59.708 40.000 0.00 0.00 32.09 3.57
1640 1666 4.093850 GTCTTGGACAAAAACACTACACGT 59.906 41.667 0.00 0.00 32.09 4.49
1641 1667 4.495184 GGTCTTGGACAAAAACACTACACG 60.495 45.833 0.14 0.00 33.68 4.49
1642 1668 4.396790 TGGTCTTGGACAAAAACACTACAC 59.603 41.667 0.14 0.00 33.68 2.90
1643 1669 4.590918 TGGTCTTGGACAAAAACACTACA 58.409 39.130 0.14 0.00 33.68 2.74
1644 1670 5.298276 TCATGGTCTTGGACAAAAACACTAC 59.702 40.000 0.00 0.00 33.68 2.73
1645 1671 5.298276 GTCATGGTCTTGGACAAAAACACTA 59.702 40.000 0.00 0.00 33.68 2.74
1711 1990 3.118149 TGGGACATGTCATGATGAAGAGG 60.118 47.826 26.47 0.00 0.00 3.69
1768 2047 7.295201 TGAAGAATACGCTGTTTCATAACAAC 58.705 34.615 0.00 0.00 43.33 3.32
1800 2079 4.275689 TCTTCTTCGCTGAAAAGCATCAAA 59.724 37.500 0.00 0.00 34.41 2.69
1973 2252 8.540507 ACACTGTCCACTATGAAGATAGTAAT 57.459 34.615 0.00 0.00 42.55 1.89
2140 2420 5.183140 ACACAAGTAGGAAAATGTATGCCAC 59.817 40.000 0.00 0.00 0.00 5.01
2144 2424 6.913170 AGCAACACAAGTAGGAAAATGTATG 58.087 36.000 0.00 0.00 0.00 2.39
2147 2427 4.278419 GGAGCAACACAAGTAGGAAAATGT 59.722 41.667 0.00 0.00 0.00 2.71
2152 2432 3.901844 AGTAGGAGCAACACAAGTAGGAA 59.098 43.478 0.00 0.00 0.00 3.36
2154 2434 3.963428 AGTAGGAGCAACACAAGTAGG 57.037 47.619 0.00 0.00 0.00 3.18
2299 2579 3.548415 CGGAACTCATCTACTACTTCGCC 60.548 52.174 0.00 0.00 0.00 5.54
2302 2582 3.380637 TGCCGGAACTCATCTACTACTTC 59.619 47.826 5.05 0.00 0.00 3.01
2303 2583 3.362706 TGCCGGAACTCATCTACTACTT 58.637 45.455 5.05 0.00 0.00 2.24
2304 2584 2.952978 CTGCCGGAACTCATCTACTACT 59.047 50.000 5.05 0.00 0.00 2.57
2305 2585 2.544069 GCTGCCGGAACTCATCTACTAC 60.544 54.545 5.05 0.00 0.00 2.73
2306 2586 1.681793 GCTGCCGGAACTCATCTACTA 59.318 52.381 5.05 0.00 0.00 1.82
2307 2587 0.461961 GCTGCCGGAACTCATCTACT 59.538 55.000 5.05 0.00 0.00 2.57
2308 2588 0.175760 TGCTGCCGGAACTCATCTAC 59.824 55.000 5.05 0.00 0.00 2.59
2309 2589 0.175760 GTGCTGCCGGAACTCATCTA 59.824 55.000 5.05 0.00 0.00 1.98
2310 2590 1.078848 GTGCTGCCGGAACTCATCT 60.079 57.895 5.05 0.00 0.00 2.90
2311 2591 2.456119 CGTGCTGCCGGAACTCATC 61.456 63.158 5.05 0.00 0.00 2.92
2312 2592 2.434884 CGTGCTGCCGGAACTCAT 60.435 61.111 5.05 0.00 0.00 2.90
2313 2593 3.611674 TCGTGCTGCCGGAACTCA 61.612 61.111 5.05 0.00 0.00 3.41
2314 2594 3.112709 GTCGTGCTGCCGGAACTC 61.113 66.667 5.05 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.