Multiple sequence alignment - TraesCS3A01G193400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G193400 chr3A 100.000 5866 0 0 1 5866 262527240 262521375 0.000000e+00 10833.0
1 TraesCS3A01G193400 chr3A 84.067 659 37 23 4757 5397 163929283 163929891 1.830000e-159 573.0
2 TraesCS3A01G193400 chr3A 90.503 179 10 3 4409 4580 163923941 163924119 4.570000e-56 230.0
3 TraesCS3A01G193400 chr3D 96.665 4438 108 16 983 5414 192055430 192059833 0.000000e+00 7339.0
4 TraesCS3A01G193400 chr3D 91.150 678 42 13 1 666 192054509 192055180 0.000000e+00 904.0
5 TraesCS3A01G193400 chr3D 88.162 718 43 19 4696 5397 144297785 144298476 0.000000e+00 817.0
6 TraesCS3A01G193400 chr3D 85.876 177 9 6 4411 4580 144291445 144291612 2.170000e-39 174.0
7 TraesCS3A01G193400 chr3D 89.286 56 4 2 5810 5864 535408608 535408662 1.050000e-07 69.4
8 TraesCS3A01G193400 chr3D 91.489 47 3 1 4267 4312 450461693 450461739 4.910000e-06 63.9
9 TraesCS3A01G193400 chr3D 91.111 45 4 0 5816 5860 175649396 175649352 1.770000e-05 62.1
10 TraesCS3A01G193400 chr3B 94.304 4459 105 35 1010 5442 275916220 275911885 0.000000e+00 6689.0
11 TraesCS3A01G193400 chr3B 93.197 588 27 6 1 580 275917617 275917035 0.000000e+00 852.0
12 TraesCS3A01G193400 chr3B 87.299 685 62 18 1 666 315389151 315388473 0.000000e+00 760.0
13 TraesCS3A01G193400 chr3B 88.043 644 36 18 4781 5397 207451878 207452507 0.000000e+00 725.0
14 TraesCS3A01G193400 chr3B 89.394 132 10 1 4494 4621 207450490 207450621 4.700000e-36 163.0
15 TraesCS3A01G193400 chr3B 91.398 93 3 4 4328 4416 461741585 461741676 7.980000e-24 122.0
16 TraesCS3A01G193400 chr2D 90.337 683 42 15 1 666 480134349 480133674 0.000000e+00 874.0
17 TraesCS3A01G193400 chr2D 89.950 199 15 4 5598 5792 373467865 373468062 9.760000e-63 252.0
18 TraesCS3A01G193400 chr2D 89.950 199 15 4 5598 5792 373471845 373472042 9.760000e-63 252.0
19 TraesCS3A01G193400 chr6D 88.889 684 52 15 1 666 6237814 6238491 0.000000e+00 821.0
20 TraesCS3A01G193400 chr6D 89.796 196 16 3 5601 5792 168723767 168723962 1.260000e-61 248.0
21 TraesCS3A01G193400 chr6D 94.444 36 1 1 5827 5861 427756758 427756723 3.000000e-03 54.7
22 TraesCS3A01G193400 chr7D 88.584 692 47 18 1 666 556308710 556309395 0.000000e+00 811.0
23 TraesCS3A01G193400 chr7D 88.551 690 48 19 1 666 171328291 171327609 0.000000e+00 808.0
24 TraesCS3A01G193400 chr7D 88.261 690 50 19 1 666 171335086 171334404 0.000000e+00 797.0
25 TraesCS3A01G193400 chr7D 89.583 96 5 4 4324 4414 626199976 626199881 3.710000e-22 117.0
26 TraesCS3A01G193400 chr1D 87.844 691 48 23 1 665 288099191 288098511 0.000000e+00 778.0
27 TraesCS3A01G193400 chr1D 90.355 197 13 5 5601 5792 137147369 137147564 2.710000e-63 254.0
28 TraesCS3A01G193400 chr1D 84.270 89 14 0 4440 4528 63635639 63635727 2.910000e-13 87.9
29 TraesCS3A01G193400 chr5A 90.179 224 18 3 5573 5792 199706593 199706816 7.440000e-74 289.0
30 TraesCS3A01G193400 chr5A 92.553 94 2 3 4327 4415 448109847 448109754 4.770000e-26 130.0
31 TraesCS3A01G193400 chr5D 91.837 196 12 3 5601 5792 365507380 365507575 2.690000e-68 270.0
32 TraesCS3A01G193400 chr5D 84.722 72 7 3 708 777 514869760 514869829 1.050000e-07 69.4
33 TraesCS3A01G193400 chr5D 87.273 55 7 0 5810 5864 199075831 199075885 4.910000e-06 63.9
34 TraesCS3A01G193400 chr4D 90.452 199 14 4 5598 5792 211340579 211340382 2.100000e-64 257.0
35 TraesCS3A01G193400 chr4D 85.897 78 9 2 737 814 489466860 489466785 1.350000e-11 82.4
36 TraesCS3A01G193400 chrUn 89.950 199 15 4 5598 5792 475887441 475887638 9.760000e-63 252.0
37 TraesCS3A01G193400 chrUn 89.848 197 14 4 5601 5792 183137991 183138186 1.260000e-61 248.0
38 TraesCS3A01G193400 chr4B 90.099 101 10 0 709 809 631075993 631075893 1.330000e-26 132.0
39 TraesCS3A01G193400 chr1B 90.426 94 5 3 4329 4418 129095802 129095895 2.870000e-23 121.0
40 TraesCS3A01G193400 chr1B 81.481 108 20 0 4440 4547 104466521 104466628 8.100000e-14 89.8
41 TraesCS3A01G193400 chr7B 89.000 100 6 3 4321 4415 732633569 732633470 1.030000e-22 119.0
42 TraesCS3A01G193400 chr1A 91.111 90 4 2 4329 4414 511621890 511621801 1.030000e-22 119.0
43 TraesCS3A01G193400 chr1A 82.022 89 16 0 4440 4528 62613475 62613563 6.300000e-10 76.8
44 TraesCS3A01G193400 chr1A 100.000 30 0 0 5784 5813 505002485 505002456 8.210000e-04 56.5
45 TraesCS3A01G193400 chr2B 87.879 99 6 3 4317 4411 103270291 103270387 1.730000e-20 111.0
46 TraesCS3A01G193400 chr6B 94.643 56 3 0 622 677 201431681 201431736 2.910000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G193400 chr3A 262521375 262527240 5865 True 10833.0 10833 100.0000 1 5866 1 chr3A.!!$R1 5865
1 TraesCS3A01G193400 chr3A 163929283 163929891 608 False 573.0 573 84.0670 4757 5397 1 chr3A.!!$F2 640
2 TraesCS3A01G193400 chr3D 192054509 192059833 5324 False 4121.5 7339 93.9075 1 5414 2 chr3D.!!$F5 5413
3 TraesCS3A01G193400 chr3D 144297785 144298476 691 False 817.0 817 88.1620 4696 5397 1 chr3D.!!$F2 701
4 TraesCS3A01G193400 chr3B 275911885 275917617 5732 True 3770.5 6689 93.7505 1 5442 2 chr3B.!!$R2 5441
5 TraesCS3A01G193400 chr3B 315388473 315389151 678 True 760.0 760 87.2990 1 666 1 chr3B.!!$R1 665
6 TraesCS3A01G193400 chr3B 207450490 207452507 2017 False 444.0 725 88.7185 4494 5397 2 chr3B.!!$F2 903
7 TraesCS3A01G193400 chr2D 480133674 480134349 675 True 874.0 874 90.3370 1 666 1 chr2D.!!$R1 665
8 TraesCS3A01G193400 chr2D 373467865 373472042 4177 False 252.0 252 89.9500 5598 5792 2 chr2D.!!$F1 194
9 TraesCS3A01G193400 chr6D 6237814 6238491 677 False 821.0 821 88.8890 1 666 1 chr6D.!!$F1 665
10 TraesCS3A01G193400 chr7D 556308710 556309395 685 False 811.0 811 88.5840 1 666 1 chr7D.!!$F1 665
11 TraesCS3A01G193400 chr7D 171327609 171328291 682 True 808.0 808 88.5510 1 666 1 chr7D.!!$R1 665
12 TraesCS3A01G193400 chr7D 171334404 171335086 682 True 797.0 797 88.2610 1 666 1 chr7D.!!$R2 665
13 TraesCS3A01G193400 chr1D 288098511 288099191 680 True 778.0 778 87.8440 1 665 1 chr1D.!!$R1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 746 0.107410 TTGCATTCGTTATCCCGCCT 60.107 50.000 0.00 0.00 0.00 5.52 F
724 781 0.165079 CATAACTTGTTCCGCGCGTT 59.835 50.000 29.95 16.63 0.00 4.84 F
811 868 0.297820 CGTTGCCTTCGCTCGTATTC 59.702 55.000 0.00 0.00 35.36 1.75 F
854 911 0.460311 ATACCAGTGTGTCGCTAGCC 59.540 55.000 9.66 0.00 0.00 3.93 F
1080 1521 0.677731 CCCTTCGCATTGCTCCTGAA 60.678 55.000 7.12 2.08 0.00 3.02 F
1347 1788 2.004017 CGGCGCAAACAAATACTCCTA 58.996 47.619 10.83 0.00 0.00 2.94 F
3436 3891 2.174424 GAGAGGGCTTGAATTCCTCCAT 59.826 50.000 2.27 0.00 46.07 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2639 1.075374 TCAAGCACCCTTGGTAAGCAT 59.925 47.619 3.86 0.00 46.69 3.79 R
2422 2877 1.380246 GGTCCATTGCAGCCATGGA 60.380 57.895 21.79 21.79 41.74 3.41 R
2779 3234 3.223435 TGAACCCTCTCCTATAAGAGCG 58.777 50.000 0.00 0.00 41.27 5.03 R
3424 3879 2.577563 TGCCTTCTCATGGAGGAATTCA 59.422 45.455 7.93 5.23 0.00 2.57 R
3675 4130 5.109903 GCATACCTGAGAAGTAAACGACAT 58.890 41.667 0.00 0.00 0.00 3.06 R
3772 4227 4.397420 AGTGTATGATCAACTGGTTTGCA 58.603 39.130 0.00 0.00 34.88 4.08 R
5527 7161 0.035598 TTTTTCCGCACGATCCCAGA 59.964 50.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 259 2.511637 AGCCTAAATGAGAAGAAGGGGG 59.488 50.000 0.00 0.00 0.00 5.40
417 438 0.596082 CCGTCAATCGCCCTGTTTTT 59.404 50.000 0.00 0.00 38.35 1.94
496 524 7.312120 GGGAATTAGGGTTAGAGGGTTTTTCTA 60.312 40.741 0.00 0.00 0.00 2.10
524 552 3.840594 CGGCCGGTCGTTATCCCA 61.841 66.667 22.93 0.00 0.00 4.37
568 596 2.972505 CTGGTCAAAGCGCCACGT 60.973 61.111 2.29 0.00 0.00 4.49
668 725 6.150641 ACTTTTAGAAAAGAATTAGGACCGCC 59.849 38.462 19.10 0.00 46.39 6.13
677 734 0.393808 TTAGGACCGCCCTTGCATTC 60.394 55.000 0.00 0.00 44.85 2.67
678 735 2.587322 TAGGACCGCCCTTGCATTCG 62.587 60.000 0.00 0.00 44.85 3.34
681 738 1.003112 ACCGCCCTTGCATTCGTTA 60.003 52.632 0.00 0.00 37.32 3.18
682 739 0.393808 ACCGCCCTTGCATTCGTTAT 60.394 50.000 0.00 0.00 37.32 1.89
684 741 0.307760 CGCCCTTGCATTCGTTATCC 59.692 55.000 0.00 0.00 37.32 2.59
686 743 0.944386 CCCTTGCATTCGTTATCCCG 59.056 55.000 0.00 0.00 0.00 5.14
687 744 0.307760 CCTTGCATTCGTTATCCCGC 59.692 55.000 0.00 0.00 0.00 6.13
688 745 0.307760 CTTGCATTCGTTATCCCGCC 59.692 55.000 0.00 0.00 0.00 6.13
689 746 0.107410 TTGCATTCGTTATCCCGCCT 60.107 50.000 0.00 0.00 0.00 5.52
690 747 0.813610 TGCATTCGTTATCCCGCCTG 60.814 55.000 0.00 0.00 0.00 4.85
691 748 1.507141 GCATTCGTTATCCCGCCTGG 61.507 60.000 0.00 0.00 0.00 4.45
702 759 3.801997 CGCCTGGGCCCTCTGAAT 61.802 66.667 25.70 0.00 37.98 2.57
703 760 2.123982 GCCTGGGCCCTCTGAATG 60.124 66.667 25.70 0.00 34.56 2.67
704 761 2.988839 GCCTGGGCCCTCTGAATGT 61.989 63.158 25.70 0.00 34.56 2.71
705 762 1.225704 CCTGGGCCCTCTGAATGTC 59.774 63.158 25.70 0.00 0.00 3.06
706 763 1.565390 CCTGGGCCCTCTGAATGTCA 61.565 60.000 25.70 0.00 0.00 3.58
710 767 2.092429 TGGGCCCTCTGAATGTCATAAC 60.092 50.000 25.70 0.00 0.00 1.89
712 769 3.372025 GGGCCCTCTGAATGTCATAACTT 60.372 47.826 17.04 0.00 0.00 2.66
713 770 3.629398 GGCCCTCTGAATGTCATAACTTG 59.371 47.826 0.00 0.00 0.00 3.16
714 771 4.265073 GCCCTCTGAATGTCATAACTTGT 58.735 43.478 0.00 0.00 0.00 3.16
715 772 4.702131 GCCCTCTGAATGTCATAACTTGTT 59.298 41.667 0.00 0.00 0.00 2.83
716 773 5.163713 GCCCTCTGAATGTCATAACTTGTTC 60.164 44.000 0.00 0.00 0.00 3.18
717 774 5.355350 CCCTCTGAATGTCATAACTTGTTCC 59.645 44.000 0.00 0.00 0.00 3.62
720 777 3.124466 TGAATGTCATAACTTGTTCCGCG 59.876 43.478 0.00 0.00 0.00 6.46
722 779 0.247145 GTCATAACTTGTTCCGCGCG 60.247 55.000 25.67 25.67 0.00 6.86
724 781 0.165079 CATAACTTGTTCCGCGCGTT 59.835 50.000 29.95 16.63 0.00 4.84
725 782 0.441145 ATAACTTGTTCCGCGCGTTC 59.559 50.000 29.95 18.02 0.00 3.95
727 784 2.101209 AACTTGTTCCGCGCGTTCAG 62.101 55.000 29.95 18.10 0.00 3.02
728 785 2.586635 TTGTTCCGCGCGTTCAGT 60.587 55.556 29.95 0.00 0.00 3.41
729 786 2.101209 CTTGTTCCGCGCGTTCAGTT 62.101 55.000 29.95 0.00 0.00 3.16
731 788 0.875040 TGTTCCGCGCGTTCAGTTTA 60.875 50.000 29.95 3.36 0.00 2.01
733 790 0.598158 TTCCGCGCGTTCAGTTTAGT 60.598 50.000 29.95 0.00 0.00 2.24
735 792 0.364515 CCGCGCGTTCAGTTTAGTAC 59.635 55.000 29.95 0.00 0.00 2.73
736 793 0.364515 CGCGCGTTCAGTTTAGTACC 59.635 55.000 24.19 0.00 0.00 3.34
737 794 1.706443 GCGCGTTCAGTTTAGTACCT 58.294 50.000 8.43 0.00 0.00 3.08
739 796 3.244976 GCGCGTTCAGTTTAGTACCTAA 58.755 45.455 8.43 0.00 0.00 2.69
741 798 4.150451 GCGCGTTCAGTTTAGTACCTAAAA 59.850 41.667 8.43 0.00 37.62 1.52
742 799 5.163923 GCGCGTTCAGTTTAGTACCTAAAAT 60.164 40.000 8.43 0.00 37.62 1.82
743 800 6.619232 GCGCGTTCAGTTTAGTACCTAAAATT 60.619 38.462 8.43 0.00 37.62 1.82
745 802 7.569957 CGCGTTCAGTTTAGTACCTAAAATTGT 60.570 37.037 0.00 0.00 37.62 2.71
746 803 8.711457 GCGTTCAGTTTAGTACCTAAAATTGTA 58.289 33.333 0.00 0.00 37.62 2.41
766 823 8.996024 ATTGTAAAATACATAAAAGTGGTGCC 57.004 30.769 0.00 0.00 38.68 5.01
767 824 7.526142 TGTAAAATACATAAAAGTGGTGCCA 57.474 32.000 0.00 0.00 32.89 4.92
768 825 8.128322 TGTAAAATACATAAAAGTGGTGCCAT 57.872 30.769 0.00 0.00 32.89 4.40
769 826 9.244292 TGTAAAATACATAAAAGTGGTGCCATA 57.756 29.630 0.00 0.00 32.89 2.74
771 828 8.996024 AAAATACATAAAAGTGGTGCCATAAC 57.004 30.769 0.00 0.00 0.00 1.89
773 830 7.954666 ATACATAAAAGTGGTGCCATAACTT 57.045 32.000 0.00 0.00 35.70 2.66
776 833 4.584327 AAAAGTGGTGCCATAACTTGTC 57.416 40.909 0.00 0.00 34.46 3.18
777 834 2.200373 AGTGGTGCCATAACTTGTCC 57.800 50.000 0.00 0.00 0.00 4.02
778 835 1.423541 AGTGGTGCCATAACTTGTCCA 59.576 47.619 0.00 0.00 0.00 4.02
779 836 2.158534 AGTGGTGCCATAACTTGTCCAA 60.159 45.455 0.00 0.00 0.00 3.53
780 837 2.625790 GTGGTGCCATAACTTGTCCAAA 59.374 45.455 0.00 0.00 0.00 3.28
781 838 3.258123 GTGGTGCCATAACTTGTCCAAAT 59.742 43.478 0.00 0.00 0.00 2.32
782 839 3.257873 TGGTGCCATAACTTGTCCAAATG 59.742 43.478 0.00 0.00 0.00 2.32
784 841 4.160252 GGTGCCATAACTTGTCCAAATGAT 59.840 41.667 0.00 0.00 0.00 2.45
786 843 4.114794 GCCATAACTTGTCCAAATGATGC 58.885 43.478 0.00 0.00 0.00 3.91
787 844 4.381825 GCCATAACTTGTCCAAATGATGCA 60.382 41.667 0.00 0.00 0.00 3.96
788 845 5.682990 GCCATAACTTGTCCAAATGATGCAT 60.683 40.000 0.00 0.00 0.00 3.96
789 846 6.461370 GCCATAACTTGTCCAAATGATGCATA 60.461 38.462 0.00 0.00 0.00 3.14
790 847 7.663827 CCATAACTTGTCCAAATGATGCATAT 58.336 34.615 0.00 0.00 0.00 1.78
791 848 8.795513 CCATAACTTGTCCAAATGATGCATATA 58.204 33.333 0.00 0.00 0.00 0.86
792 849 9.616634 CATAACTTGTCCAAATGATGCATATAC 57.383 33.333 0.00 0.00 0.00 1.47
793 850 6.304356 ACTTGTCCAAATGATGCATATACG 57.696 37.500 0.00 0.00 0.00 3.06
795 852 6.318648 ACTTGTCCAAATGATGCATATACGTT 59.681 34.615 0.00 0.00 0.00 3.99
797 854 4.911610 GTCCAAATGATGCATATACGTTGC 59.088 41.667 0.00 3.73 40.55 4.17
798 855 4.023279 TCCAAATGATGCATATACGTTGCC 60.023 41.667 8.16 0.00 39.39 4.52
799 856 4.022935 CCAAATGATGCATATACGTTGCCT 60.023 41.667 8.16 0.00 39.39 4.75
800 857 5.507817 CCAAATGATGCATATACGTTGCCTT 60.508 40.000 8.16 0.00 39.39 4.35
801 858 5.362556 AATGATGCATATACGTTGCCTTC 57.637 39.130 8.16 6.14 39.39 3.46
802 859 2.799978 TGATGCATATACGTTGCCTTCG 59.200 45.455 8.16 0.00 39.39 3.79
803 860 0.934496 TGCATATACGTTGCCTTCGC 59.066 50.000 8.16 0.00 39.39 4.70
804 861 1.217882 GCATATACGTTGCCTTCGCT 58.782 50.000 0.00 0.00 33.95 4.93
805 862 1.192534 GCATATACGTTGCCTTCGCTC 59.807 52.381 0.00 0.00 33.95 5.03
807 864 0.452987 TATACGTTGCCTTCGCTCGT 59.547 50.000 0.00 9.70 43.92 4.18
808 865 0.452987 ATACGTTGCCTTCGCTCGTA 59.547 50.000 0.00 12.40 44.94 3.43
809 866 0.452987 TACGTTGCCTTCGCTCGTAT 59.547 50.000 0.00 0.00 42.57 3.06
811 868 0.297820 CGTTGCCTTCGCTCGTATTC 59.702 55.000 0.00 0.00 35.36 1.75
812 869 0.651031 GTTGCCTTCGCTCGTATTCC 59.349 55.000 0.00 0.00 35.36 3.01
815 872 1.134521 TGCCTTCGCTCGTATTCCATT 60.135 47.619 0.00 0.00 35.36 3.16
818 875 3.393800 CCTTCGCTCGTATTCCATTGAT 58.606 45.455 0.00 0.00 0.00 2.57
819 876 3.185188 CCTTCGCTCGTATTCCATTGATG 59.815 47.826 0.00 0.00 0.00 3.07
820 877 2.135139 TCGCTCGTATTCCATTGATGC 58.865 47.619 0.00 0.00 0.00 3.91
822 879 2.096565 CGCTCGTATTCCATTGATGCAG 60.097 50.000 0.00 0.00 0.00 4.41
823 880 2.874701 GCTCGTATTCCATTGATGCAGT 59.125 45.455 0.00 0.00 0.00 4.40
824 881 3.303593 GCTCGTATTCCATTGATGCAGTG 60.304 47.826 0.00 0.00 0.00 3.66
825 882 2.613595 TCGTATTCCATTGATGCAGTGC 59.386 45.455 8.58 8.58 0.00 4.40
849 906 1.375396 TGGCATACCAGTGTGTCGC 60.375 57.895 0.00 0.00 42.67 5.19
850 907 1.079127 GGCATACCAGTGTGTCGCT 60.079 57.895 0.00 0.00 35.26 4.93
852 909 1.560923 GCATACCAGTGTGTCGCTAG 58.439 55.000 0.00 0.00 0.00 3.42
853 910 1.560923 CATACCAGTGTGTCGCTAGC 58.439 55.000 4.06 4.06 0.00 3.42
854 911 0.460311 ATACCAGTGTGTCGCTAGCC 59.540 55.000 9.66 0.00 0.00 3.93
855 912 1.601419 TACCAGTGTGTCGCTAGCCC 61.601 60.000 9.66 0.04 0.00 5.19
856 913 2.656646 CAGTGTGTCGCTAGCCCA 59.343 61.111 9.66 3.12 0.00 5.36
859 916 2.342279 TGTGTCGCTAGCCCACAC 59.658 61.111 26.93 26.93 40.77 3.82
860 917 2.809601 GTGTCGCTAGCCCACACG 60.810 66.667 22.37 4.11 31.67 4.49
861 918 3.299977 TGTCGCTAGCCCACACGT 61.300 61.111 9.66 0.00 0.00 4.49
862 919 2.506438 GTCGCTAGCCCACACGTC 60.506 66.667 9.66 0.00 0.00 4.34
863 920 2.986979 TCGCTAGCCCACACGTCA 60.987 61.111 9.66 0.00 0.00 4.35
864 921 2.184322 CGCTAGCCCACACGTCAT 59.816 61.111 9.66 0.00 0.00 3.06
865 922 1.447838 CGCTAGCCCACACGTCATT 60.448 57.895 9.66 0.00 0.00 2.57
866 923 1.695893 CGCTAGCCCACACGTCATTG 61.696 60.000 9.66 0.00 0.00 2.82
868 925 1.369091 CTAGCCCACACGTCATTGGC 61.369 60.000 6.77 6.77 42.48 4.52
869 926 2.672996 GCCCACACGTCATTGGCT 60.673 61.111 7.47 0.00 39.05 4.75
871 928 2.562912 CCACACGTCATTGGCTGC 59.437 61.111 0.00 0.00 0.00 5.25
873 930 3.049674 ACACGTCATTGGCTGCGG 61.050 61.111 0.00 0.00 0.00 5.69
892 949 3.341043 CGCGCTGTGAGCTGTGTT 61.341 61.111 5.56 0.00 39.60 3.32
893 950 2.885676 CGCGCTGTGAGCTGTGTTT 61.886 57.895 5.56 0.00 39.60 2.83
894 951 1.369689 GCGCTGTGAGCTGTGTTTG 60.370 57.895 0.00 0.00 39.60 2.93
895 952 1.369689 CGCTGTGAGCTGTGTTTGC 60.370 57.895 0.00 0.00 39.60 3.68
896 953 1.779025 CGCTGTGAGCTGTGTTTGCT 61.779 55.000 0.00 0.00 44.24 3.91
928 985 3.525800 AGGAACACCCTGCACTTTAAT 57.474 42.857 0.00 0.00 45.61 1.40
929 986 3.844640 AGGAACACCCTGCACTTTAATT 58.155 40.909 0.00 0.00 45.61 1.40
930 987 4.993028 AGGAACACCCTGCACTTTAATTA 58.007 39.130 0.00 0.00 45.61 1.40
931 988 5.390387 AGGAACACCCTGCACTTTAATTAA 58.610 37.500 0.00 0.00 45.61 1.40
932 989 5.836358 AGGAACACCCTGCACTTTAATTAAA 59.164 36.000 10.16 10.16 45.61 1.52
933 990 6.496911 AGGAACACCCTGCACTTTAATTAAAT 59.503 34.615 10.97 0.04 45.61 1.40
934 991 7.672239 AGGAACACCCTGCACTTTAATTAAATA 59.328 33.333 10.97 0.00 45.61 1.40
935 992 7.973944 GGAACACCCTGCACTTTAATTAAATAG 59.026 37.037 10.97 7.96 0.00 1.73
936 993 8.644374 AACACCCTGCACTTTAATTAAATAGA 57.356 30.769 10.97 0.00 0.00 1.98
937 994 8.644374 ACACCCTGCACTTTAATTAAATAGAA 57.356 30.769 10.97 1.49 0.00 2.10
938 995 8.520351 ACACCCTGCACTTTAATTAAATAGAAC 58.480 33.333 10.97 1.51 0.00 3.01
939 996 8.519526 CACCCTGCACTTTAATTAAATAGAACA 58.480 33.333 10.97 5.44 0.00 3.18
940 997 9.084533 ACCCTGCACTTTAATTAAATAGAACAA 57.915 29.630 10.97 0.00 0.00 2.83
941 998 9.921637 CCCTGCACTTTAATTAAATAGAACAAA 57.078 29.630 10.97 0.00 0.00 2.83
968 1025 3.536956 GGTAACTATGCTGCAGGTACA 57.463 47.619 17.12 5.30 37.84 2.90
969 1026 4.073293 GGTAACTATGCTGCAGGTACAT 57.927 45.455 17.12 12.82 37.84 2.29
970 1027 4.451900 GGTAACTATGCTGCAGGTACATT 58.548 43.478 17.12 0.00 37.84 2.71
971 1028 4.511826 GGTAACTATGCTGCAGGTACATTC 59.488 45.833 17.12 0.00 37.84 2.67
972 1029 3.912496 ACTATGCTGCAGGTACATTCA 57.088 42.857 17.12 2.85 0.00 2.57
973 1030 3.801698 ACTATGCTGCAGGTACATTCAG 58.198 45.455 17.12 2.67 0.00 3.02
974 1031 2.795231 ATGCTGCAGGTACATTCAGT 57.205 45.000 17.12 0.00 0.00 3.41
975 1032 1.812235 TGCTGCAGGTACATTCAGTG 58.188 50.000 17.12 0.00 0.00 3.66
976 1033 1.347378 TGCTGCAGGTACATTCAGTGA 59.653 47.619 17.12 0.00 0.00 3.41
977 1034 2.026915 TGCTGCAGGTACATTCAGTGAT 60.027 45.455 17.12 0.00 0.00 3.06
978 1035 2.611292 GCTGCAGGTACATTCAGTGATC 59.389 50.000 17.12 0.00 0.00 2.92
979 1036 3.681034 GCTGCAGGTACATTCAGTGATCT 60.681 47.826 17.12 0.00 0.00 2.75
980 1037 3.865446 TGCAGGTACATTCAGTGATCTG 58.135 45.455 0.00 0.00 42.54 2.90
981 1038 3.261643 TGCAGGTACATTCAGTGATCTGT 59.738 43.478 12.09 12.09 41.91 3.41
1080 1521 0.677731 CCCTTCGCATTGCTCCTGAA 60.678 55.000 7.12 2.08 0.00 3.02
1316 1757 9.958285 CAAATAATGAGATGATATAAACGTCGG 57.042 33.333 0.00 0.00 0.00 4.79
1347 1788 2.004017 CGGCGCAAACAAATACTCCTA 58.996 47.619 10.83 0.00 0.00 2.94
1491 1932 6.183360 TGGCGATTTCTCTATTCGTCTTTTTC 60.183 38.462 0.00 0.00 38.26 2.29
1622 2063 7.676104 GCACATCCGTTTTGTTGAATTTCTTTT 60.676 33.333 0.00 0.00 0.00 2.27
1651 2092 4.229304 TGAATTTTAGGAAGCGATGGGA 57.771 40.909 0.00 0.00 0.00 4.37
1752 2193 5.643777 CAGGTTGTTACTTACTCCCATCTTG 59.356 44.000 0.00 0.00 0.00 3.02
2002 2457 8.100508 AGTTTATTTAGCTGTCTCCAGAAAAC 57.899 34.615 0.00 0.00 41.50 2.43
2207 2662 2.683362 GCTTACCAAGGGTGCTTGATAC 59.317 50.000 0.00 0.00 36.19 2.24
2216 2671 3.838317 AGGGTGCTTGATACACTCAACTA 59.162 43.478 0.00 0.00 41.17 2.24
2347 2802 5.591067 CACCTTGGTTAACTGGAAAACTGTA 59.409 40.000 15.84 0.00 0.00 2.74
2354 2809 3.402628 ACTGGAAAACTGTATGTCGCT 57.597 42.857 0.00 0.00 0.00 4.93
2422 2877 4.006319 GGAGAGCTTTGCATCTTAGTTGT 58.994 43.478 0.00 0.00 0.00 3.32
2541 2996 8.945481 AACATCTGTGAATCAACAAATTTTGA 57.055 26.923 15.81 0.00 39.79 2.69
2735 3190 3.055891 GCCAATTGAAGTACCAGCCATTT 60.056 43.478 7.12 0.00 0.00 2.32
2779 3234 2.565841 ACCAAGAACTTCAGCAGTGAC 58.434 47.619 0.00 0.00 35.12 3.67
3436 3891 2.174424 GAGAGGGCTTGAATTCCTCCAT 59.826 50.000 2.27 0.00 46.07 3.41
3653 4108 3.681897 GTGCTTATAGATTGAGATGGGCG 59.318 47.826 0.00 0.00 0.00 6.13
3675 4130 5.753438 GCGAATTGACATGTCCTCTTATACA 59.247 40.000 22.85 0.00 0.00 2.29
3772 4227 2.944129 TGTTGGAGCTTTTAACTGGCT 58.056 42.857 9.21 0.00 39.16 4.75
3836 4291 0.839946 GTGACATGGGTATGGAGCCT 59.160 55.000 0.00 0.00 44.19 4.58
3870 4326 3.480470 ACACTGGTTTCTGACAAGATGG 58.520 45.455 0.00 0.00 33.20 3.51
4054 4510 7.377398 TGTATATCAAGCAATGCAAACTTTGT 58.623 30.769 8.35 0.00 34.32 2.83
4338 4794 4.583907 GGAGGTAGTATGTTGTACTCCCTC 59.416 50.000 14.83 14.83 44.87 4.30
4480 4939 4.697756 GTGGCTGCCCTGTGCGTA 62.698 66.667 17.53 0.00 45.60 4.42
4649 6229 2.864097 GCGACGATCTGGTGATGCTTAT 60.864 50.000 0.00 0.00 32.19 1.73
4719 6299 0.182537 TGGTGAGGTGAGGTTTGGTG 59.817 55.000 0.00 0.00 0.00 4.17
4871 6465 1.200948 GATGTGCTTCTTGCTTGGTCC 59.799 52.381 0.00 0.00 43.37 4.46
5124 6750 9.034800 ACATAAAAATGTTACAACCATCCAGAT 57.965 29.630 0.00 0.00 0.00 2.90
5131 6757 6.299922 TGTTACAACCATCCAGATACAACAA 58.700 36.000 0.00 0.00 0.00 2.83
5160 6786 4.475944 CACGTTTTCTTATCAGCCCTTTG 58.524 43.478 0.00 0.00 0.00 2.77
5283 6909 3.430929 GGTTGTCACTCTTGTCAGTGTCT 60.431 47.826 0.74 0.00 43.80 3.41
5292 6918 2.492019 TGTCAGTGTCTGAGTTGTCG 57.508 50.000 0.00 0.00 41.46 4.35
5367 6995 3.168963 CTGCTCACATCATTTTTCTGCG 58.831 45.455 0.00 0.00 0.00 5.18
5397 7028 8.777413 AGTATCATAATCAATCAATGGTCAACG 58.223 33.333 0.00 0.00 0.00 4.10
5398 7029 7.806409 ATCATAATCAATCAATGGTCAACGA 57.194 32.000 0.00 0.00 0.00 3.85
5426 7060 0.396695 CACTAAGCTCCCTACCCCGA 60.397 60.000 0.00 0.00 0.00 5.14
5458 7092 6.456795 GCACTAAGCTCCCTCATTTTAATT 57.543 37.500 0.00 0.00 41.15 1.40
5459 7093 6.867550 GCACTAAGCTCCCTCATTTTAATTT 58.132 36.000 0.00 0.00 41.15 1.82
5460 7094 7.323420 GCACTAAGCTCCCTCATTTTAATTTT 58.677 34.615 0.00 0.00 41.15 1.82
5461 7095 8.466798 GCACTAAGCTCCCTCATTTTAATTTTA 58.533 33.333 0.00 0.00 41.15 1.52
5466 7100 7.851228 AGCTCCCTCATTTTAATTTTAAAGGG 58.149 34.615 9.77 9.77 36.48 3.95
5467 7101 6.538742 GCTCCCTCATTTTAATTTTAAAGGGC 59.461 38.462 10.71 1.57 35.75 5.19
5468 7102 6.635755 TCCCTCATTTTAATTTTAAAGGGCG 58.364 36.000 10.71 0.00 35.75 6.13
5469 7103 5.815222 CCCTCATTTTAATTTTAAAGGGCGG 59.185 40.000 5.16 2.98 34.45 6.13
5470 7104 6.351456 CCCTCATTTTAATTTTAAAGGGCGGA 60.351 38.462 5.16 0.00 34.45 5.54
5471 7105 6.756542 CCTCATTTTAATTTTAAAGGGCGGAG 59.243 38.462 0.00 0.00 34.45 4.63
5472 7106 7.363443 CCTCATTTTAATTTTAAAGGGCGGAGA 60.363 37.037 0.00 0.00 34.45 3.71
5473 7107 7.897864 TCATTTTAATTTTAAAGGGCGGAGAA 58.102 30.769 0.00 0.00 34.45 2.87
5474 7108 8.536175 TCATTTTAATTTTAAAGGGCGGAGAAT 58.464 29.630 0.00 0.00 34.45 2.40
5475 7109 8.817100 CATTTTAATTTTAAAGGGCGGAGAATC 58.183 33.333 0.00 0.00 34.45 2.52
5476 7110 4.632538 AATTTTAAAGGGCGGAGAATCG 57.367 40.909 0.00 0.00 34.37 3.34
5477 7111 3.337694 TTTTAAAGGGCGGAGAATCGA 57.662 42.857 0.00 0.00 34.37 3.59
5478 7112 3.553828 TTTAAAGGGCGGAGAATCGAT 57.446 42.857 0.00 0.00 34.37 3.59
5479 7113 3.553828 TTAAAGGGCGGAGAATCGATT 57.446 42.857 11.20 11.20 34.37 3.34
5480 7114 1.668419 AAAGGGCGGAGAATCGATTG 58.332 50.000 16.96 1.77 34.37 2.67
5481 7115 0.830648 AAGGGCGGAGAATCGATTGA 59.169 50.000 16.96 0.00 34.37 2.57
5482 7116 0.390860 AGGGCGGAGAATCGATTGAG 59.609 55.000 16.96 4.98 34.37 3.02
5483 7117 0.601311 GGGCGGAGAATCGATTGAGG 60.601 60.000 16.96 3.17 34.37 3.86
5484 7118 1.224722 GGCGGAGAATCGATTGAGGC 61.225 60.000 16.96 12.67 34.37 4.70
5485 7119 0.249657 GCGGAGAATCGATTGAGGCT 60.250 55.000 16.96 6.05 34.37 4.58
5486 7120 1.000163 GCGGAGAATCGATTGAGGCTA 60.000 52.381 16.96 0.00 34.37 3.93
5487 7121 2.667137 CGGAGAATCGATTGAGGCTAC 58.333 52.381 16.96 6.05 34.37 3.58
5488 7122 2.294791 CGGAGAATCGATTGAGGCTACT 59.705 50.000 16.96 4.04 34.37 2.57
5489 7123 3.648009 GGAGAATCGATTGAGGCTACTG 58.352 50.000 16.96 0.00 34.37 2.74
5490 7124 3.319405 GGAGAATCGATTGAGGCTACTGA 59.681 47.826 16.96 0.00 34.37 3.41
5491 7125 4.295051 GAGAATCGATTGAGGCTACTGAC 58.705 47.826 16.96 0.00 0.00 3.51
5492 7126 3.701542 AGAATCGATTGAGGCTACTGACA 59.298 43.478 16.96 0.00 0.00 3.58
5493 7127 4.343526 AGAATCGATTGAGGCTACTGACAT 59.656 41.667 16.96 0.00 0.00 3.06
5494 7128 3.717400 TCGATTGAGGCTACTGACATC 57.283 47.619 0.00 0.00 0.00 3.06
5495 7129 2.033424 TCGATTGAGGCTACTGACATCG 59.967 50.000 0.00 0.00 0.00 3.84
5496 7130 2.033424 CGATTGAGGCTACTGACATCGA 59.967 50.000 0.00 0.00 0.00 3.59
5497 7131 2.941453 TTGAGGCTACTGACATCGAC 57.059 50.000 0.00 0.00 0.00 4.20
5498 7132 2.130272 TGAGGCTACTGACATCGACT 57.870 50.000 0.00 0.00 0.00 4.18
5499 7133 1.745653 TGAGGCTACTGACATCGACTG 59.254 52.381 0.00 0.00 0.00 3.51
5500 7134 1.746220 GAGGCTACTGACATCGACTGT 59.254 52.381 0.00 0.00 42.15 3.55
5501 7135 2.943690 GAGGCTACTGACATCGACTGTA 59.056 50.000 0.00 0.00 38.54 2.74
5502 7136 2.946329 AGGCTACTGACATCGACTGTAG 59.054 50.000 11.75 11.75 38.54 2.74
5505 7139 4.357018 CTACTGACATCGACTGTAGCAA 57.643 45.455 0.00 0.00 38.54 3.91
5506 7140 3.876274 ACTGACATCGACTGTAGCAAT 57.124 42.857 0.00 0.00 38.54 3.56
5507 7141 3.775202 ACTGACATCGACTGTAGCAATC 58.225 45.455 0.00 0.00 38.54 2.67
5508 7142 2.786027 CTGACATCGACTGTAGCAATCG 59.214 50.000 0.00 0.00 38.54 3.34
5514 7148 4.104696 TCGACTGTAGCAATCGATTTCA 57.895 40.909 8.21 5.10 39.80 2.69
5515 7149 4.490743 TCGACTGTAGCAATCGATTTCAA 58.509 39.130 8.21 0.00 39.80 2.69
5516 7150 4.326278 TCGACTGTAGCAATCGATTTCAAC 59.674 41.667 8.21 7.19 39.80 3.18
5517 7151 4.492570 CGACTGTAGCAATCGATTTCAACC 60.493 45.833 8.21 0.00 38.10 3.77
5518 7152 3.689649 ACTGTAGCAATCGATTTCAACCC 59.310 43.478 8.21 0.00 0.00 4.11
5519 7153 2.675844 TGTAGCAATCGATTTCAACCCG 59.324 45.455 8.21 0.00 0.00 5.28
5520 7154 1.094785 AGCAATCGATTTCAACCCGG 58.905 50.000 8.21 0.00 0.00 5.73
5521 7155 0.808755 GCAATCGATTTCAACCCGGT 59.191 50.000 8.21 0.00 0.00 5.28
5522 7156 1.202143 GCAATCGATTTCAACCCGGTC 60.202 52.381 8.21 0.00 0.00 4.79
5523 7157 1.062002 CAATCGATTTCAACCCGGTCG 59.938 52.381 8.21 0.55 0.00 4.79
5524 7158 0.461339 ATCGATTTCAACCCGGTCGG 60.461 55.000 0.00 1.86 33.46 4.79
5525 7159 2.746803 CGATTTCAACCCGGTCGGC 61.747 63.158 0.00 0.00 33.26 5.54
5526 7160 2.744709 ATTTCAACCCGGTCGGCG 60.745 61.111 0.00 0.00 33.26 6.46
5527 7161 3.540367 ATTTCAACCCGGTCGGCGT 62.540 57.895 6.85 1.01 33.26 5.68
5528 7162 4.668118 TTCAACCCGGTCGGCGTC 62.668 66.667 6.85 0.00 33.26 5.19
5535 7169 4.570663 CGGTCGGCGTCTGGGATC 62.571 72.222 6.85 0.00 0.00 3.36
5536 7170 4.570663 GGTCGGCGTCTGGGATCG 62.571 72.222 6.85 0.00 0.00 3.69
5537 7171 3.823330 GTCGGCGTCTGGGATCGT 61.823 66.667 6.85 0.00 0.00 3.73
5538 7172 3.822192 TCGGCGTCTGGGATCGTG 61.822 66.667 6.85 0.00 0.00 4.35
5542 7176 3.822192 CGTCTGGGATCGTGCGGA 61.822 66.667 0.00 0.00 0.00 5.54
5543 7177 2.577059 GTCTGGGATCGTGCGGAA 59.423 61.111 0.00 0.00 0.00 4.30
5544 7178 1.079405 GTCTGGGATCGTGCGGAAA 60.079 57.895 0.00 0.00 0.00 3.13
5545 7179 0.672401 GTCTGGGATCGTGCGGAAAA 60.672 55.000 0.00 0.00 0.00 2.29
5546 7180 0.035598 TCTGGGATCGTGCGGAAAAA 59.964 50.000 0.00 0.00 0.00 1.94
5547 7181 1.094785 CTGGGATCGTGCGGAAAAAT 58.905 50.000 0.00 0.00 0.00 1.82
5548 7182 1.064060 CTGGGATCGTGCGGAAAAATC 59.936 52.381 0.00 0.00 0.00 2.17
5549 7183 1.091537 GGGATCGTGCGGAAAAATCA 58.908 50.000 0.00 0.00 0.00 2.57
5550 7184 1.202143 GGGATCGTGCGGAAAAATCAC 60.202 52.381 0.00 0.00 0.00 3.06
5551 7185 1.202143 GGATCGTGCGGAAAAATCACC 60.202 52.381 0.00 0.00 0.00 4.02
5570 7204 4.473520 CAGGGTGGGCTCGCGATT 62.474 66.667 10.36 0.00 0.00 3.34
5571 7205 4.162690 AGGGTGGGCTCGCGATTC 62.163 66.667 10.36 4.37 0.00 2.52
5572 7206 4.467084 GGGTGGGCTCGCGATTCA 62.467 66.667 10.36 5.61 0.00 2.57
5573 7207 2.892425 GGTGGGCTCGCGATTCAG 60.892 66.667 10.36 0.00 0.00 3.02
5574 7208 2.184322 GTGGGCTCGCGATTCAGA 59.816 61.111 10.36 0.00 0.00 3.27
5575 7209 1.227380 GTGGGCTCGCGATTCAGAT 60.227 57.895 10.36 0.00 0.00 2.90
5576 7210 0.811616 GTGGGCTCGCGATTCAGATT 60.812 55.000 10.36 0.00 0.00 2.40
5577 7211 0.750249 TGGGCTCGCGATTCAGATTA 59.250 50.000 10.36 0.00 0.00 1.75
5578 7212 1.269778 TGGGCTCGCGATTCAGATTAG 60.270 52.381 10.36 0.00 0.00 1.73
5579 7213 1.269831 GGGCTCGCGATTCAGATTAGT 60.270 52.381 10.36 0.00 0.00 2.24
5580 7214 2.055100 GGCTCGCGATTCAGATTAGTC 58.945 52.381 10.36 0.00 0.00 2.59
5581 7215 2.543861 GGCTCGCGATTCAGATTAGTCA 60.544 50.000 10.36 0.00 0.00 3.41
5582 7216 2.469516 GCTCGCGATTCAGATTAGTCAC 59.530 50.000 10.36 0.00 0.00 3.67
5583 7217 3.695816 CTCGCGATTCAGATTAGTCACA 58.304 45.455 10.36 0.00 0.00 3.58
5584 7218 4.104696 TCGCGATTCAGATTAGTCACAA 57.895 40.909 3.71 0.00 0.00 3.33
5585 7219 4.682787 TCGCGATTCAGATTAGTCACAAT 58.317 39.130 3.71 0.00 0.00 2.71
5586 7220 4.504097 TCGCGATTCAGATTAGTCACAATG 59.496 41.667 3.71 0.00 0.00 2.82
5587 7221 4.318333 CGCGATTCAGATTAGTCACAATGG 60.318 45.833 0.00 0.00 0.00 3.16
5588 7222 4.024556 GCGATTCAGATTAGTCACAATGGG 60.025 45.833 0.00 0.00 0.00 4.00
5589 7223 5.118990 CGATTCAGATTAGTCACAATGGGT 58.881 41.667 0.00 0.00 0.00 4.51
5590 7224 6.280643 CGATTCAGATTAGTCACAATGGGTA 58.719 40.000 0.00 0.00 0.00 3.69
5591 7225 6.422100 CGATTCAGATTAGTCACAATGGGTAG 59.578 42.308 0.00 0.00 0.00 3.18
5592 7226 5.023533 TCAGATTAGTCACAATGGGTAGC 57.976 43.478 0.00 0.00 0.00 3.58
5593 7227 4.469586 TCAGATTAGTCACAATGGGTAGCA 59.530 41.667 0.00 0.00 0.00 3.49
5594 7228 5.045942 TCAGATTAGTCACAATGGGTAGCAA 60.046 40.000 0.00 0.00 0.00 3.91
5595 7229 5.065218 CAGATTAGTCACAATGGGTAGCAAC 59.935 44.000 0.00 0.00 0.00 4.17
5596 7230 4.634012 TTAGTCACAATGGGTAGCAACT 57.366 40.909 0.00 0.00 0.00 3.16
5597 7231 3.508845 AGTCACAATGGGTAGCAACTT 57.491 42.857 0.00 0.00 0.00 2.66
5598 7232 4.634012 AGTCACAATGGGTAGCAACTTA 57.366 40.909 0.00 0.00 0.00 2.24
5599 7233 4.579869 AGTCACAATGGGTAGCAACTTAG 58.420 43.478 0.00 0.00 0.00 2.18
5600 7234 4.286032 AGTCACAATGGGTAGCAACTTAGA 59.714 41.667 0.00 0.00 0.00 2.10
5601 7235 4.392138 GTCACAATGGGTAGCAACTTAGAC 59.608 45.833 0.00 0.00 0.00 2.59
5602 7236 4.286032 TCACAATGGGTAGCAACTTAGACT 59.714 41.667 0.00 0.00 0.00 3.24
5603 7237 5.482526 TCACAATGGGTAGCAACTTAGACTA 59.517 40.000 0.00 0.00 0.00 2.59
5604 7238 5.812642 CACAATGGGTAGCAACTTAGACTAG 59.187 44.000 0.00 0.00 0.00 2.57
5605 7239 5.484290 ACAATGGGTAGCAACTTAGACTAGT 59.516 40.000 0.00 0.00 0.00 2.57
5606 7240 6.666546 ACAATGGGTAGCAACTTAGACTAGTA 59.333 38.462 0.00 0.00 0.00 1.82
5607 7241 7.179694 ACAATGGGTAGCAACTTAGACTAGTAA 59.820 37.037 0.00 0.00 0.00 2.24
5608 7242 7.916077 ATGGGTAGCAACTTAGACTAGTAAT 57.084 36.000 0.00 0.00 0.00 1.89
5609 7243 7.108841 TGGGTAGCAACTTAGACTAGTAATG 57.891 40.000 0.00 0.00 0.00 1.90
5610 7244 6.666546 TGGGTAGCAACTTAGACTAGTAATGT 59.333 38.462 0.00 0.00 0.00 2.71
5611 7245 7.179694 TGGGTAGCAACTTAGACTAGTAATGTT 59.820 37.037 0.00 0.00 0.00 2.71
5612 7246 8.689972 GGGTAGCAACTTAGACTAGTAATGTTA 58.310 37.037 0.00 0.00 0.00 2.41
5613 7247 9.513727 GGTAGCAACTTAGACTAGTAATGTTAC 57.486 37.037 0.00 2.16 29.26 2.50
5625 7259 9.829507 GACTAGTAATGTTACTACCTCTAGTGA 57.170 37.037 8.23 0.00 43.36 3.41
5635 7269 9.122779 GTTACTACCTCTAGTGATGAGTAACAT 57.877 37.037 22.37 0.00 43.49 2.71
5641 7275 6.865726 CCTCTAGTGATGAGTAACATATGTGC 59.134 42.308 9.63 5.86 39.56 4.57
5654 7288 1.528129 TATGTGCGGTGTCATGCAAA 58.472 45.000 4.49 0.38 43.75 3.68
5729 7363 7.419711 ACAGTAACTAGCTATGTTACCACAT 57.580 36.000 25.92 14.84 46.31 3.21
5731 7365 7.093465 ACAGTAACTAGCTATGTTACCACATGT 60.093 37.037 25.92 22.41 46.31 3.21
5733 7367 5.932619 ACTAGCTATGTTACCACATGTCA 57.067 39.130 0.00 0.00 43.92 3.58
5734 7368 6.485830 ACTAGCTATGTTACCACATGTCAT 57.514 37.500 0.00 0.00 43.92 3.06
5776 7411 2.423185 CCGCATCATCTGTTTTGCCTAA 59.577 45.455 0.00 0.00 0.00 2.69
5792 7427 6.741992 TTGCCTAAAGATGTGTGATGTTAG 57.258 37.500 0.00 0.00 0.00 2.34
5793 7428 6.048732 TGCCTAAAGATGTGTGATGTTAGA 57.951 37.500 0.00 0.00 0.00 2.10
5794 7429 6.108687 TGCCTAAAGATGTGTGATGTTAGAG 58.891 40.000 0.00 0.00 0.00 2.43
5796 7431 6.108687 CCTAAAGATGTGTGATGTTAGAGCA 58.891 40.000 0.00 0.00 0.00 4.26
5798 7433 6.674694 AAAGATGTGTGATGTTAGAGCATC 57.325 37.500 0.00 0.00 43.97 3.91
5809 7444 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
5810 7445 2.437359 AGCATCTCCAGCCGTTGC 60.437 61.111 0.00 0.00 37.95 4.17
5811 7446 3.869272 GCATCTCCAGCCGTTGCG 61.869 66.667 0.00 0.00 44.33 4.85
5812 7447 3.869272 CATCTCCAGCCGTTGCGC 61.869 66.667 0.00 0.00 44.33 6.09
5816 7451 4.666397 TCCAGCCGTTGCGCGTAA 62.666 61.111 5.23 5.23 44.33 3.18
5817 7452 3.718097 CCAGCCGTTGCGCGTAAA 61.718 61.111 12.24 1.07 44.33 2.01
5820 7455 3.163358 GCCGTTGCGCGTAAAAGC 61.163 61.111 12.24 13.74 39.32 3.51
5832 9080 1.347320 GTAAAAGCGTCGTCTGGAGG 58.653 55.000 0.00 0.00 0.00 4.30
5836 9084 4.415332 GCGTCGTCTGGAGGCGAA 62.415 66.667 4.66 0.00 45.44 4.70
5837 9085 2.504244 CGTCGTCTGGAGGCGAAC 60.504 66.667 4.66 0.00 38.91 3.95
5839 9087 3.744719 TCGTCTGGAGGCGAACCG 61.745 66.667 0.00 0.00 42.76 4.44
5840 9088 4.796231 CGTCTGGAGGCGAACCGG 62.796 72.222 0.00 0.00 42.76 5.28
5859 9107 2.819552 CGCTAAAATCGGCGTGGGG 61.820 63.158 6.85 0.00 45.34 4.96
5862 9110 1.001887 TAAAATCGGCGTGGGGCTT 60.002 52.632 6.85 0.00 42.94 4.35
5864 9112 1.468506 AAAATCGGCGTGGGGCTTTT 61.469 50.000 6.85 2.49 42.94 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 182 2.810852 CCACAAGAGGAGCTTTTCAGTC 59.189 50.000 0.00 0.00 33.60 3.51
251 259 3.604875 TCCCAATCCTACTGTTTCGTC 57.395 47.619 0.00 0.00 0.00 4.20
374 388 2.683933 TCCGGTGAGAAGAGGGGC 60.684 66.667 0.00 0.00 0.00 5.80
417 438 1.217747 TCTCCTCTCCCTCTCTGGCA 61.218 60.000 0.00 0.00 0.00 4.92
496 524 1.375551 GACCGGCCGTGAATATTTGT 58.624 50.000 26.12 11.30 0.00 2.83
524 552 4.990910 ACAGCAGAGGGCCCAGGT 62.991 66.667 27.56 16.40 46.50 4.00
568 596 1.600107 CACCCCGCTAACCAGCTTA 59.400 57.895 0.00 0.00 46.26 3.09
585 613 2.145397 AGGTCCTAATCTCGTCTGCA 57.855 50.000 0.00 0.00 0.00 4.41
668 725 0.307760 GCGGGATAACGAATGCAAGG 59.692 55.000 0.00 0.00 35.47 3.61
686 743 2.123982 CATTCAGAGGGCCCAGGC 60.124 66.667 27.56 13.29 41.06 4.85
687 744 1.225704 GACATTCAGAGGGCCCAGG 59.774 63.158 27.56 13.19 0.00 4.45
688 745 0.549950 ATGACATTCAGAGGGCCCAG 59.450 55.000 27.56 13.99 0.00 4.45
689 746 1.891933 TATGACATTCAGAGGGCCCA 58.108 50.000 27.56 1.75 0.00 5.36
690 747 2.173569 AGTTATGACATTCAGAGGGCCC 59.826 50.000 16.46 16.46 0.00 5.80
691 748 3.567478 AGTTATGACATTCAGAGGGCC 57.433 47.619 0.00 0.00 0.00 5.80
692 749 4.265073 ACAAGTTATGACATTCAGAGGGC 58.735 43.478 0.00 0.00 0.00 5.19
693 750 5.355350 GGAACAAGTTATGACATTCAGAGGG 59.645 44.000 0.00 0.00 0.00 4.30
694 751 5.063944 CGGAACAAGTTATGACATTCAGAGG 59.936 44.000 0.00 0.00 0.00 3.69
695 752 5.446473 GCGGAACAAGTTATGACATTCAGAG 60.446 44.000 0.00 0.00 0.00 3.35
697 754 4.651994 GCGGAACAAGTTATGACATTCAG 58.348 43.478 0.00 0.00 0.00 3.02
700 757 2.159572 GCGCGGAACAAGTTATGACATT 60.160 45.455 8.83 0.00 0.00 2.71
701 758 1.396996 GCGCGGAACAAGTTATGACAT 59.603 47.619 8.83 0.00 0.00 3.06
702 759 0.793861 GCGCGGAACAAGTTATGACA 59.206 50.000 8.83 0.00 0.00 3.58
703 760 0.247145 CGCGCGGAACAAGTTATGAC 60.247 55.000 24.84 0.00 0.00 3.06
704 761 0.668096 ACGCGCGGAACAAGTTATGA 60.668 50.000 35.22 0.00 0.00 2.15
705 762 0.165079 AACGCGCGGAACAAGTTATG 59.835 50.000 35.22 0.99 0.00 1.90
706 763 0.441145 GAACGCGCGGAACAAGTTAT 59.559 50.000 35.22 5.42 0.00 1.89
710 767 2.101209 AACTGAACGCGCGGAACAAG 62.101 55.000 35.22 23.69 0.00 3.16
712 769 0.875040 TAAACTGAACGCGCGGAACA 60.875 50.000 35.22 26.38 0.00 3.18
713 770 0.179258 CTAAACTGAACGCGCGGAAC 60.179 55.000 35.22 23.34 0.00 3.62
714 771 0.598158 ACTAAACTGAACGCGCGGAA 60.598 50.000 35.22 17.69 0.00 4.30
715 772 0.240678 TACTAAACTGAACGCGCGGA 59.759 50.000 35.22 16.41 0.00 5.54
716 773 0.364515 GTACTAAACTGAACGCGCGG 59.635 55.000 35.22 18.70 0.00 6.46
717 774 0.364515 GGTACTAAACTGAACGCGCG 59.635 55.000 30.96 30.96 0.00 6.86
741 798 8.589338 TGGCACCACTTTTATGTATTTTACAAT 58.411 29.630 0.00 0.00 42.76 2.71
742 799 7.952671 TGGCACCACTTTTATGTATTTTACAA 58.047 30.769 0.00 0.00 42.76 2.41
743 800 7.526142 TGGCACCACTTTTATGTATTTTACA 57.474 32.000 0.00 0.00 43.80 2.41
746 803 8.811994 AGTTATGGCACCACTTTTATGTATTTT 58.188 29.630 0.00 0.00 0.00 1.82
747 804 8.361169 AGTTATGGCACCACTTTTATGTATTT 57.639 30.769 0.00 0.00 0.00 1.40
749 806 7.396055 ACAAGTTATGGCACCACTTTTATGTAT 59.604 33.333 9.82 0.00 0.00 2.29
750 807 6.717540 ACAAGTTATGGCACCACTTTTATGTA 59.282 34.615 9.82 0.00 0.00 2.29
751 808 5.538433 ACAAGTTATGGCACCACTTTTATGT 59.462 36.000 9.82 4.36 0.00 2.29
752 809 6.024552 ACAAGTTATGGCACCACTTTTATG 57.975 37.500 9.82 3.83 0.00 1.90
753 810 5.185056 GGACAAGTTATGGCACCACTTTTAT 59.815 40.000 9.82 0.96 39.66 1.40
754 811 4.521256 GGACAAGTTATGGCACCACTTTTA 59.479 41.667 9.82 0.00 39.66 1.52
755 812 3.320826 GGACAAGTTATGGCACCACTTTT 59.679 43.478 9.82 5.00 39.66 2.27
756 813 2.890945 GGACAAGTTATGGCACCACTTT 59.109 45.455 9.82 3.69 39.66 2.66
757 814 2.158534 TGGACAAGTTATGGCACCACTT 60.159 45.455 7.21 7.21 39.66 3.16
758 815 1.423541 TGGACAAGTTATGGCACCACT 59.576 47.619 0.00 0.00 39.66 4.00
759 816 1.904287 TGGACAAGTTATGGCACCAC 58.096 50.000 0.00 0.00 39.66 4.16
761 818 3.509575 TCATTTGGACAAGTTATGGCACC 59.490 43.478 0.00 0.00 39.66 5.01
762 819 4.782019 TCATTTGGACAAGTTATGGCAC 57.218 40.909 0.00 0.00 39.66 5.01
763 820 4.381825 GCATCATTTGGACAAGTTATGGCA 60.382 41.667 0.00 0.00 39.66 4.92
764 821 4.114794 GCATCATTTGGACAAGTTATGGC 58.885 43.478 4.60 0.00 35.73 4.40
765 822 5.327616 TGCATCATTTGGACAAGTTATGG 57.672 39.130 4.60 0.00 0.00 2.74
766 823 9.616634 GTATATGCATCATTTGGACAAGTTATG 57.383 33.333 0.19 0.00 0.00 1.90
767 824 8.506437 CGTATATGCATCATTTGGACAAGTTAT 58.494 33.333 0.19 0.00 0.00 1.89
768 825 7.497579 ACGTATATGCATCATTTGGACAAGTTA 59.502 33.333 0.19 0.00 0.00 2.24
769 826 6.318648 ACGTATATGCATCATTTGGACAAGTT 59.681 34.615 0.19 0.00 0.00 2.66
770 827 5.822519 ACGTATATGCATCATTTGGACAAGT 59.177 36.000 0.19 0.00 0.00 3.16
771 828 6.304356 ACGTATATGCATCATTTGGACAAG 57.696 37.500 0.19 0.00 0.00 3.16
773 830 5.505489 GCAACGTATATGCATCATTTGGACA 60.505 40.000 0.19 0.00 43.29 4.02
776 833 4.022935 AGGCAACGTATATGCATCATTTGG 60.023 41.667 12.42 0.00 45.60 3.28
777 834 5.112220 AGGCAACGTATATGCATCATTTG 57.888 39.130 12.42 2.35 45.60 2.32
778 835 5.560760 CGAAGGCAACGTATATGCATCATTT 60.561 40.000 12.42 0.00 45.60 2.32
779 836 4.083855 CGAAGGCAACGTATATGCATCATT 60.084 41.667 12.42 2.12 45.60 2.57
780 837 3.433274 CGAAGGCAACGTATATGCATCAT 59.567 43.478 12.42 0.00 45.60 2.45
781 838 2.799978 CGAAGGCAACGTATATGCATCA 59.200 45.455 12.42 0.00 45.60 3.07
782 839 2.411547 GCGAAGGCAACGTATATGCATC 60.412 50.000 12.42 8.78 45.60 3.91
784 841 0.934496 GCGAAGGCAACGTATATGCA 59.066 50.000 12.42 0.00 45.60 3.96
786 843 1.452025 CGAGCGAAGGCAACGTATATG 59.548 52.381 0.00 0.00 43.41 1.78
787 844 1.066605 ACGAGCGAAGGCAACGTATAT 59.933 47.619 8.86 0.00 46.39 0.86
788 845 0.452987 ACGAGCGAAGGCAACGTATA 59.547 50.000 8.86 0.00 46.39 1.47
789 846 0.452987 TACGAGCGAAGGCAACGTAT 59.547 50.000 11.90 0.00 46.39 3.06
790 847 1.875262 TACGAGCGAAGGCAACGTA 59.125 52.632 11.90 11.90 46.39 3.57
792 849 0.297820 GAATACGAGCGAAGGCAACG 59.702 55.000 0.00 0.00 43.41 4.10
793 850 0.651031 GGAATACGAGCGAAGGCAAC 59.349 55.000 0.00 0.00 43.41 4.17
795 852 0.464036 ATGGAATACGAGCGAAGGCA 59.536 50.000 0.00 0.00 43.41 4.75
797 854 2.821546 TCAATGGAATACGAGCGAAGG 58.178 47.619 0.00 0.00 0.00 3.46
798 855 3.363378 GCATCAATGGAATACGAGCGAAG 60.363 47.826 0.00 0.00 0.00 3.79
799 856 2.543848 GCATCAATGGAATACGAGCGAA 59.456 45.455 0.00 0.00 0.00 4.70
800 857 2.135139 GCATCAATGGAATACGAGCGA 58.865 47.619 0.00 0.00 0.00 4.93
801 858 1.866601 TGCATCAATGGAATACGAGCG 59.133 47.619 0.00 0.00 0.00 5.03
802 859 2.874701 ACTGCATCAATGGAATACGAGC 59.125 45.455 0.00 0.00 0.00 5.03
803 860 3.303593 GCACTGCATCAATGGAATACGAG 60.304 47.826 0.00 0.00 0.00 4.18
804 861 2.613595 GCACTGCATCAATGGAATACGA 59.386 45.455 0.00 0.00 0.00 3.43
805 862 2.355444 TGCACTGCATCAATGGAATACG 59.645 45.455 0.00 0.00 31.71 3.06
827 884 1.670730 CACACTGGTATGCCACGCA 60.671 57.895 0.00 0.00 44.86 5.24
829 886 1.351430 CGACACACTGGTATGCCACG 61.351 60.000 0.00 0.00 40.46 4.94
830 887 1.635663 GCGACACACTGGTATGCCAC 61.636 60.000 0.00 0.00 40.46 5.01
831 888 1.375396 GCGACACACTGGTATGCCA 60.375 57.895 1.39 1.39 43.73 4.92
832 889 0.174845 TAGCGACACACTGGTATGCC 59.825 55.000 0.00 0.00 0.00 4.40
833 890 1.560923 CTAGCGACACACTGGTATGC 58.439 55.000 0.00 0.00 0.00 3.14
834 891 1.560923 GCTAGCGACACACTGGTATG 58.439 55.000 0.00 0.00 0.00 2.39
835 892 0.460311 GGCTAGCGACACACTGGTAT 59.540 55.000 9.00 0.00 0.00 2.73
836 893 1.601419 GGGCTAGCGACACACTGGTA 61.601 60.000 9.00 0.00 0.00 3.25
837 894 2.657237 GGCTAGCGACACACTGGT 59.343 61.111 9.00 0.00 0.00 4.00
838 895 2.125512 GGGCTAGCGACACACTGG 60.126 66.667 9.00 0.00 0.00 4.00
839 896 1.738099 GTGGGCTAGCGACACACTG 60.738 63.158 26.70 0.00 35.30 3.66
841 898 2.342279 TGTGGGCTAGCGACACAC 59.658 61.111 29.05 23.47 39.92 3.82
842 899 2.342279 GTGTGGGCTAGCGACACA 59.658 61.111 29.84 29.46 42.29 3.72
843 900 2.809601 CGTGTGGGCTAGCGACAC 60.810 66.667 27.09 27.09 37.27 3.67
844 901 3.277211 GACGTGTGGGCTAGCGACA 62.277 63.158 9.00 11.25 0.00 4.35
845 902 2.506438 GACGTGTGGGCTAGCGAC 60.506 66.667 9.00 8.57 0.00 5.19
846 903 1.884075 AATGACGTGTGGGCTAGCGA 61.884 55.000 9.00 0.00 0.00 4.93
847 904 1.447838 AATGACGTGTGGGCTAGCG 60.448 57.895 9.00 0.00 0.00 4.26
848 905 1.369091 CCAATGACGTGTGGGCTAGC 61.369 60.000 6.04 6.04 0.00 3.42
849 906 1.369091 GCCAATGACGTGTGGGCTAG 61.369 60.000 8.39 0.00 41.39 3.42
850 907 1.376683 GCCAATGACGTGTGGGCTA 60.377 57.895 8.39 0.00 41.39 3.93
852 909 2.672996 AGCCAATGACGTGTGGGC 60.673 61.111 7.70 7.70 44.92 5.36
853 910 2.981560 GCAGCCAATGACGTGTGGG 61.982 63.158 10.62 0.00 35.28 4.61
854 911 2.562912 GCAGCCAATGACGTGTGG 59.437 61.111 0.00 0.00 38.00 4.17
855 912 2.174107 CGCAGCCAATGACGTGTG 59.826 61.111 0.00 0.00 0.00 3.82
856 913 3.049674 CCGCAGCCAATGACGTGT 61.050 61.111 0.00 0.00 0.00 4.49
900 957 1.760029 GCAGGGTGTTCCTTGGAAAAA 59.240 47.619 3.39 0.00 45.47 1.94
901 958 1.342474 TGCAGGGTGTTCCTTGGAAAA 60.342 47.619 3.39 0.00 45.47 2.29
902 959 0.260230 TGCAGGGTGTTCCTTGGAAA 59.740 50.000 3.39 0.00 45.47 3.13
903 960 0.467290 GTGCAGGGTGTTCCTTGGAA 60.467 55.000 0.00 0.00 45.47 3.53
904 961 1.150536 GTGCAGGGTGTTCCTTGGA 59.849 57.895 0.00 0.00 45.47 3.53
905 962 0.468029 AAGTGCAGGGTGTTCCTTGG 60.468 55.000 0.00 0.00 45.47 3.61
906 963 1.402787 AAAGTGCAGGGTGTTCCTTG 58.597 50.000 0.00 0.00 45.47 3.61
907 964 3.306472 TTAAAGTGCAGGGTGTTCCTT 57.694 42.857 0.00 0.00 45.47 3.36
909 966 5.715434 TTAATTAAAGTGCAGGGTGTTCC 57.285 39.130 0.00 0.00 0.00 3.62
910 967 8.736244 TCTATTTAATTAAAGTGCAGGGTGTTC 58.264 33.333 15.45 0.00 0.00 3.18
911 968 8.644374 TCTATTTAATTAAAGTGCAGGGTGTT 57.356 30.769 15.45 0.00 0.00 3.32
912 969 8.520351 GTTCTATTTAATTAAAGTGCAGGGTGT 58.480 33.333 15.45 0.00 0.00 4.16
913 970 8.519526 TGTTCTATTTAATTAAAGTGCAGGGTG 58.480 33.333 15.45 0.28 0.00 4.61
914 971 8.644374 TGTTCTATTTAATTAAAGTGCAGGGT 57.356 30.769 15.45 0.16 0.00 4.34
915 972 9.921637 TTTGTTCTATTTAATTAAAGTGCAGGG 57.078 29.630 15.45 2.40 0.00 4.45
934 991 9.113838 CAGCATAGTTACCTGAATATTTGTTCT 57.886 33.333 0.00 0.00 0.00 3.01
935 992 7.857885 GCAGCATAGTTACCTGAATATTTGTTC 59.142 37.037 0.00 0.00 0.00 3.18
936 993 7.339212 TGCAGCATAGTTACCTGAATATTTGTT 59.661 33.333 0.00 0.00 0.00 2.83
937 994 6.828273 TGCAGCATAGTTACCTGAATATTTGT 59.172 34.615 0.00 0.00 0.00 2.83
938 995 7.263100 TGCAGCATAGTTACCTGAATATTTG 57.737 36.000 0.00 0.00 0.00 2.32
939 996 6.488006 CCTGCAGCATAGTTACCTGAATATTT 59.512 38.462 8.66 0.00 0.00 1.40
940 997 6.000219 CCTGCAGCATAGTTACCTGAATATT 59.000 40.000 8.66 0.00 0.00 1.28
941 998 5.072329 ACCTGCAGCATAGTTACCTGAATAT 59.928 40.000 8.66 0.00 0.00 1.28
942 999 4.408921 ACCTGCAGCATAGTTACCTGAATA 59.591 41.667 8.66 0.00 0.00 1.75
943 1000 3.200825 ACCTGCAGCATAGTTACCTGAAT 59.799 43.478 8.66 0.00 0.00 2.57
944 1001 2.571653 ACCTGCAGCATAGTTACCTGAA 59.428 45.455 8.66 0.00 0.00 3.02
945 1002 2.187958 ACCTGCAGCATAGTTACCTGA 58.812 47.619 8.66 0.00 0.00 3.86
946 1003 2.698855 ACCTGCAGCATAGTTACCTG 57.301 50.000 8.66 0.00 0.00 4.00
947 1004 3.104512 TGTACCTGCAGCATAGTTACCT 58.895 45.455 8.66 0.00 0.00 3.08
948 1005 3.536956 TGTACCTGCAGCATAGTTACC 57.463 47.619 8.66 0.00 0.00 2.85
949 1006 5.116180 TGAATGTACCTGCAGCATAGTTAC 58.884 41.667 8.66 2.93 0.00 2.50
950 1007 5.104941 ACTGAATGTACCTGCAGCATAGTTA 60.105 40.000 8.66 0.00 31.74 2.24
951 1008 4.194640 CTGAATGTACCTGCAGCATAGTT 58.805 43.478 8.66 0.00 0.00 2.24
952 1009 3.198635 ACTGAATGTACCTGCAGCATAGT 59.801 43.478 8.66 5.42 31.74 2.12
953 1010 3.558829 CACTGAATGTACCTGCAGCATAG 59.441 47.826 8.66 4.80 31.74 2.23
954 1011 3.197549 TCACTGAATGTACCTGCAGCATA 59.802 43.478 8.66 0.00 31.74 3.14
955 1012 2.026915 TCACTGAATGTACCTGCAGCAT 60.027 45.455 8.66 3.61 31.74 3.79
956 1013 1.347378 TCACTGAATGTACCTGCAGCA 59.653 47.619 8.66 0.81 31.74 4.41
957 1014 2.099141 TCACTGAATGTACCTGCAGC 57.901 50.000 8.66 0.00 31.74 5.25
958 1015 3.869832 CAGATCACTGAATGTACCTGCAG 59.130 47.826 6.78 6.78 46.03 4.41
959 1016 3.261643 ACAGATCACTGAATGTACCTGCA 59.738 43.478 0.00 0.00 46.03 4.41
960 1017 3.866651 ACAGATCACTGAATGTACCTGC 58.133 45.455 0.00 0.00 46.03 4.85
961 1018 5.037385 CGTACAGATCACTGAATGTACCTG 58.963 45.833 21.18 11.69 46.03 4.00
962 1019 4.440250 GCGTACAGATCACTGAATGTACCT 60.440 45.833 21.18 0.00 46.03 3.08
963 1020 3.797256 GCGTACAGATCACTGAATGTACC 59.203 47.826 21.18 14.76 46.03 3.34
964 1021 4.421058 TGCGTACAGATCACTGAATGTAC 58.579 43.478 19.08 19.08 46.03 2.90
965 1022 4.712122 TGCGTACAGATCACTGAATGTA 57.288 40.909 0.00 4.21 46.03 2.29
966 1023 3.592898 TGCGTACAGATCACTGAATGT 57.407 42.857 0.00 5.77 46.03 2.71
979 1036 1.163420 CCAGTTGGTTGCTGCGTACA 61.163 55.000 6.97 0.00 32.93 2.90
980 1037 1.574428 CCAGTTGGTTGCTGCGTAC 59.426 57.895 0.00 0.00 32.93 3.67
981 1038 1.599518 CCCAGTTGGTTGCTGCGTA 60.600 57.895 0.00 0.00 32.93 4.42
1080 1521 7.044798 CCTTTCTTCTTGATCTAATCGGAAGT 58.955 38.462 15.45 0.00 39.95 3.01
1280 1721 3.417101 TCTCATTATTTGTGTTGGCCGT 58.583 40.909 0.00 0.00 0.00 5.68
1310 1751 1.430707 CCGTTTCACAAACCCGACGT 61.431 55.000 0.00 0.00 38.14 4.34
1316 1757 0.802607 TTTGCGCCGTTTCACAAACC 60.803 50.000 4.18 0.00 38.14 3.27
1320 1761 0.109272 TTTGTTTGCGCCGTTTCACA 60.109 45.000 4.18 0.00 0.00 3.58
1651 2092 1.303561 TCCGCAGCAGGAAAAGCAT 60.304 52.632 3.77 0.00 37.36 3.79
1752 2193 5.533903 ACCATGAGAAATATGTGATGAAGCC 59.466 40.000 0.00 0.00 0.00 4.35
2062 2517 2.126467 CAGTTTGTGGATTTGCGTTGG 58.874 47.619 0.00 0.00 0.00 3.77
2123 2578 8.329203 AGCAGGTTTTACAAAATTCAACAAAA 57.671 26.923 0.00 0.00 0.00 2.44
2184 2639 1.075374 TCAAGCACCCTTGGTAAGCAT 59.925 47.619 3.86 0.00 46.69 3.79
2216 2671 6.717289 TGGGAGTGTACAAAATTATGTAGCT 58.283 36.000 0.00 0.00 36.51 3.32
2347 2802 2.154462 CCCAACTTCTTTGAGCGACAT 58.846 47.619 0.00 0.00 37.39 3.06
2422 2877 1.380246 GGTCCATTGCAGCCATGGA 60.380 57.895 21.79 21.79 41.74 3.41
2502 2957 8.771920 TTCACAGATGTTTAGATTTGTATCGT 57.228 30.769 0.00 0.00 35.85 3.73
2507 2962 8.849168 TGTTGATTCACAGATGTTTAGATTTGT 58.151 29.630 0.00 0.00 0.00 2.83
2541 2996 6.652900 ACATTTTAACAAACAAGGTGCACTTT 59.347 30.769 17.98 13.35 37.29 2.66
2735 3190 7.989170 GGTTATTTCCTTAATTTCGTCTAGGGA 59.011 37.037 0.00 0.00 0.00 4.20
2779 3234 3.223435 TGAACCCTCTCCTATAAGAGCG 58.777 50.000 0.00 0.00 41.27 5.03
3424 3879 2.577563 TGCCTTCTCATGGAGGAATTCA 59.422 45.455 7.93 5.23 0.00 2.57
3675 4130 5.109903 GCATACCTGAGAAGTAAACGACAT 58.890 41.667 0.00 0.00 0.00 3.06
3772 4227 4.397420 AGTGTATGATCAACTGGTTTGCA 58.603 39.130 0.00 0.00 34.88 4.08
3836 4291 7.773224 TCAGAAACCAGTGTAGAATCTGAAAAA 59.227 33.333 0.00 0.00 38.94 1.94
4054 4510 7.504924 ACAGCTGCAAACTATAGTTAAACAA 57.495 32.000 18.31 3.02 37.25 2.83
4156 4612 5.126396 ACTTCCAGCATAACAAAGCTTTC 57.874 39.130 9.23 0.00 39.50 2.62
4338 4794 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
4373 4829 8.479689 TCCCATAATGTAAGACTTTCGACATAA 58.520 33.333 3.14 0.00 30.92 1.90
4376 4832 6.103997 GTCCCATAATGTAAGACTTTCGACA 58.896 40.000 0.00 0.00 0.00 4.35
4377 4833 6.103997 TGTCCCATAATGTAAGACTTTCGAC 58.896 40.000 0.00 0.00 0.00 4.20
4378 4834 6.153851 TCTGTCCCATAATGTAAGACTTTCGA 59.846 38.462 0.00 0.00 0.00 3.71
4379 4835 6.338146 TCTGTCCCATAATGTAAGACTTTCG 58.662 40.000 0.00 0.00 0.00 3.46
4380 4836 6.763610 CCTCTGTCCCATAATGTAAGACTTTC 59.236 42.308 0.00 0.00 0.00 2.62
4480 4939 1.135083 CGGAAATCTGCCTCGTACTGT 60.135 52.381 0.00 0.00 0.00 3.55
4583 5049 2.985486 GATCACTCGACGGCTACGCC 62.985 65.000 0.00 0.00 46.75 5.68
4588 5054 0.965866 TTGGAGATCACTCGACGGCT 60.966 55.000 0.00 0.00 43.44 5.52
4719 6299 2.118404 CCACACCACACCACACCAC 61.118 63.158 0.00 0.00 0.00 4.16
4871 6465 1.604604 TTTCACGGAAGGCAAAGAGG 58.395 50.000 0.00 0.00 0.00 3.69
5007 6621 1.391485 GACGATGTGCTGCTGTAAGTG 59.609 52.381 0.00 0.00 35.30 3.16
5124 6750 5.885881 AGAAAACGTGCATTTCTTGTTGTA 58.114 33.333 7.77 0.00 42.85 2.41
5131 6757 5.393962 GCTGATAAGAAAACGTGCATTTCT 58.606 37.500 7.77 7.77 46.30 2.52
5148 6774 4.919774 TTTGACTACCAAAGGGCTGATA 57.080 40.909 0.00 0.00 39.65 2.15
5160 6786 2.973945 ACGATGGAAGCTTTGACTACC 58.026 47.619 0.00 0.00 0.00 3.18
5292 6918 1.225745 CGAAATGGACTCGCAACGC 60.226 57.895 0.00 0.00 0.00 4.84
5435 7069 6.456795 AATTAAAATGAGGGAGCTTAGTGC 57.543 37.500 0.00 0.00 43.29 4.40
5442 7076 6.538742 GCCCTTTAAAATTAAAATGAGGGAGC 59.461 38.462 18.37 9.63 36.91 4.70
5443 7077 6.756542 CGCCCTTTAAAATTAAAATGAGGGAG 59.243 38.462 18.37 13.58 36.91 4.30
5444 7078 6.351456 CCGCCCTTTAAAATTAAAATGAGGGA 60.351 38.462 18.37 0.00 36.91 4.20
5445 7079 5.815222 CCGCCCTTTAAAATTAAAATGAGGG 59.185 40.000 12.91 12.91 37.41 4.30
5446 7080 6.635755 TCCGCCCTTTAAAATTAAAATGAGG 58.364 36.000 0.55 5.57 32.73 3.86
5447 7081 7.543756 TCTCCGCCCTTTAAAATTAAAATGAG 58.456 34.615 0.55 0.00 32.73 2.90
5448 7082 7.469537 TCTCCGCCCTTTAAAATTAAAATGA 57.530 32.000 0.55 0.00 32.73 2.57
5449 7083 8.716646 ATTCTCCGCCCTTTAAAATTAAAATG 57.283 30.769 0.55 0.00 32.73 2.32
5450 7084 7.704899 CGATTCTCCGCCCTTTAAAATTAAAAT 59.295 33.333 0.55 0.00 32.73 1.82
5451 7085 7.030768 CGATTCTCCGCCCTTTAAAATTAAAA 58.969 34.615 0.55 0.00 32.73 1.52
5452 7086 6.374894 TCGATTCTCCGCCCTTTAAAATTAAA 59.625 34.615 0.00 0.00 0.00 1.52
5453 7087 5.881443 TCGATTCTCCGCCCTTTAAAATTAA 59.119 36.000 0.00 0.00 0.00 1.40
5454 7088 5.430007 TCGATTCTCCGCCCTTTAAAATTA 58.570 37.500 0.00 0.00 0.00 1.40
5455 7089 4.266714 TCGATTCTCCGCCCTTTAAAATT 58.733 39.130 0.00 0.00 0.00 1.82
5456 7090 3.881220 TCGATTCTCCGCCCTTTAAAAT 58.119 40.909 0.00 0.00 0.00 1.82
5457 7091 3.337694 TCGATTCTCCGCCCTTTAAAA 57.662 42.857 0.00 0.00 0.00 1.52
5458 7092 3.553828 ATCGATTCTCCGCCCTTTAAA 57.446 42.857 0.00 0.00 0.00 1.52
5459 7093 3.118555 TCAATCGATTCTCCGCCCTTTAA 60.119 43.478 7.92 0.00 0.00 1.52
5460 7094 2.432874 TCAATCGATTCTCCGCCCTTTA 59.567 45.455 7.92 0.00 0.00 1.85
5461 7095 1.209504 TCAATCGATTCTCCGCCCTTT 59.790 47.619 7.92 0.00 0.00 3.11
5462 7096 0.830648 TCAATCGATTCTCCGCCCTT 59.169 50.000 7.92 0.00 0.00 3.95
5463 7097 0.390860 CTCAATCGATTCTCCGCCCT 59.609 55.000 7.92 0.00 0.00 5.19
5464 7098 0.601311 CCTCAATCGATTCTCCGCCC 60.601 60.000 7.92 0.00 0.00 6.13
5465 7099 1.224722 GCCTCAATCGATTCTCCGCC 61.225 60.000 7.92 0.00 0.00 6.13
5466 7100 0.249657 AGCCTCAATCGATTCTCCGC 60.250 55.000 7.92 7.70 0.00 5.54
5467 7101 2.294791 AGTAGCCTCAATCGATTCTCCG 59.705 50.000 7.92 0.00 0.00 4.63
5468 7102 3.319405 TCAGTAGCCTCAATCGATTCTCC 59.681 47.826 7.92 0.00 0.00 3.71
5469 7103 4.202060 TGTCAGTAGCCTCAATCGATTCTC 60.202 45.833 7.92 0.00 0.00 2.87
5470 7104 3.701542 TGTCAGTAGCCTCAATCGATTCT 59.298 43.478 7.92 5.00 0.00 2.40
5471 7105 4.046938 TGTCAGTAGCCTCAATCGATTC 57.953 45.455 7.92 0.00 0.00 2.52
5472 7106 4.626042 GATGTCAGTAGCCTCAATCGATT 58.374 43.478 4.39 4.39 0.00 3.34
5473 7107 3.304996 CGATGTCAGTAGCCTCAATCGAT 60.305 47.826 0.00 0.00 0.00 3.59
5474 7108 2.033424 CGATGTCAGTAGCCTCAATCGA 59.967 50.000 0.00 0.00 0.00 3.59
5475 7109 2.033424 TCGATGTCAGTAGCCTCAATCG 59.967 50.000 0.00 0.00 0.00 3.34
5476 7110 3.067461 AGTCGATGTCAGTAGCCTCAATC 59.933 47.826 0.00 0.00 0.00 2.67
5477 7111 3.027412 AGTCGATGTCAGTAGCCTCAAT 58.973 45.455 0.00 0.00 0.00 2.57
5478 7112 2.164422 CAGTCGATGTCAGTAGCCTCAA 59.836 50.000 0.00 0.00 0.00 3.02
5479 7113 1.745653 CAGTCGATGTCAGTAGCCTCA 59.254 52.381 0.00 0.00 0.00 3.86
5480 7114 1.746220 ACAGTCGATGTCAGTAGCCTC 59.254 52.381 0.00 0.00 37.75 4.70
5481 7115 1.840737 ACAGTCGATGTCAGTAGCCT 58.159 50.000 0.00 0.00 37.75 4.58
5482 7116 3.341857 CTACAGTCGATGTCAGTAGCC 57.658 52.381 4.15 0.00 42.70 3.93
5484 7118 4.357018 TTGCTACAGTCGATGTCAGTAG 57.643 45.455 4.15 6.19 42.70 2.57
5485 7119 4.495844 CGATTGCTACAGTCGATGTCAGTA 60.496 45.833 6.65 0.00 44.29 2.74
5486 7120 3.732169 CGATTGCTACAGTCGATGTCAGT 60.732 47.826 6.65 0.00 44.29 3.41
5487 7121 2.786027 CGATTGCTACAGTCGATGTCAG 59.214 50.000 6.65 3.41 44.29 3.51
5488 7122 2.422127 TCGATTGCTACAGTCGATGTCA 59.578 45.455 10.57 0.00 44.92 3.58
5489 7123 3.066369 TCGATTGCTACAGTCGATGTC 57.934 47.619 10.57 0.00 44.92 3.06
5494 7128 4.492570 GGTTGAAATCGATTGCTACAGTCG 60.493 45.833 25.59 6.19 43.22 4.18
5495 7129 4.201822 GGGTTGAAATCGATTGCTACAGTC 60.202 45.833 25.59 13.11 0.00 3.51
5496 7130 3.689649 GGGTTGAAATCGATTGCTACAGT 59.310 43.478 25.59 4.69 0.00 3.55
5497 7131 3.242413 CGGGTTGAAATCGATTGCTACAG 60.242 47.826 25.59 17.37 0.00 2.74
5498 7132 2.675844 CGGGTTGAAATCGATTGCTACA 59.324 45.455 25.59 15.02 0.00 2.74
5499 7133 2.031683 CCGGGTTGAAATCGATTGCTAC 59.968 50.000 19.02 19.02 0.00 3.58
5500 7134 2.285083 CCGGGTTGAAATCGATTGCTA 58.715 47.619 17.08 6.93 0.00 3.49
5501 7135 1.094785 CCGGGTTGAAATCGATTGCT 58.905 50.000 17.08 0.00 0.00 3.91
5502 7136 0.808755 ACCGGGTTGAAATCGATTGC 59.191 50.000 12.25 10.75 0.00 3.56
5503 7137 1.062002 CGACCGGGTTGAAATCGATTG 59.938 52.381 12.25 0.00 34.77 2.67
5504 7138 1.365699 CGACCGGGTTGAAATCGATT 58.634 50.000 8.88 4.39 34.77 3.34
5505 7139 0.461339 CCGACCGGGTTGAAATCGAT 60.461 55.000 16.28 0.00 34.77 3.59
5506 7140 1.079681 CCGACCGGGTTGAAATCGA 60.080 57.895 16.28 0.00 34.77 3.59
5507 7141 2.746803 GCCGACCGGGTTGAAATCG 61.747 63.158 16.28 6.35 38.44 3.34
5508 7142 2.746803 CGCCGACCGGGTTGAAATC 61.747 63.158 16.28 1.60 38.44 2.17
5509 7143 2.744709 CGCCGACCGGGTTGAAAT 60.745 61.111 16.28 0.00 38.44 2.17
5510 7144 4.238654 ACGCCGACCGGGTTGAAA 62.239 61.111 16.28 0.00 42.52 2.69
5511 7145 4.668118 GACGCCGACCGGGTTGAA 62.668 66.667 16.28 0.00 42.52 2.69
5518 7152 4.570663 GATCCCAGACGCCGACCG 62.571 72.222 0.00 0.00 44.21 4.79
5519 7153 4.570663 CGATCCCAGACGCCGACC 62.571 72.222 0.00 0.00 0.00 4.79
5520 7154 3.823330 ACGATCCCAGACGCCGAC 61.823 66.667 0.00 0.00 0.00 4.79
5521 7155 3.822192 CACGATCCCAGACGCCGA 61.822 66.667 0.00 0.00 0.00 5.54
5525 7159 2.829043 TTTCCGCACGATCCCAGACG 62.829 60.000 0.00 0.00 0.00 4.18
5526 7160 0.672401 TTTTCCGCACGATCCCAGAC 60.672 55.000 0.00 0.00 0.00 3.51
5527 7161 0.035598 TTTTTCCGCACGATCCCAGA 59.964 50.000 0.00 0.00 0.00 3.86
5528 7162 1.064060 GATTTTTCCGCACGATCCCAG 59.936 52.381 0.00 0.00 0.00 4.45
5529 7163 1.091537 GATTTTTCCGCACGATCCCA 58.908 50.000 0.00 0.00 0.00 4.37
5530 7164 1.091537 TGATTTTTCCGCACGATCCC 58.908 50.000 0.00 0.00 0.00 3.85
5531 7165 1.202143 GGTGATTTTTCCGCACGATCC 60.202 52.381 0.00 0.00 33.48 3.36
5532 7166 1.529010 CGGTGATTTTTCCGCACGATC 60.529 52.381 0.00 0.00 40.28 3.69
5533 7167 0.446222 CGGTGATTTTTCCGCACGAT 59.554 50.000 0.00 0.00 40.28 3.73
5534 7168 1.863491 CGGTGATTTTTCCGCACGA 59.137 52.632 0.00 0.00 40.28 4.35
5535 7169 4.433102 CGGTGATTTTTCCGCACG 57.567 55.556 0.00 0.00 40.28 5.34
5540 7174 2.653557 ACCCTGCGGTGATTTTTCC 58.346 52.632 0.00 0.00 42.48 3.13
5553 7187 4.473520 AATCGCGAGCCCACCCTG 62.474 66.667 16.66 0.00 0.00 4.45
5554 7188 4.162690 GAATCGCGAGCCCACCCT 62.163 66.667 16.66 0.00 0.00 4.34
5555 7189 4.467084 TGAATCGCGAGCCCACCC 62.467 66.667 16.66 0.00 0.00 4.61
5556 7190 2.650813 ATCTGAATCGCGAGCCCACC 62.651 60.000 16.66 0.08 0.00 4.61
5557 7191 0.811616 AATCTGAATCGCGAGCCCAC 60.812 55.000 16.66 4.46 0.00 4.61
5558 7192 0.750249 TAATCTGAATCGCGAGCCCA 59.250 50.000 16.66 11.14 0.00 5.36
5559 7193 1.269831 ACTAATCTGAATCGCGAGCCC 60.270 52.381 16.66 6.59 0.00 5.19
5560 7194 2.055100 GACTAATCTGAATCGCGAGCC 58.945 52.381 16.66 9.36 0.00 4.70
5561 7195 2.469516 GTGACTAATCTGAATCGCGAGC 59.530 50.000 16.66 10.04 0.00 5.03
5562 7196 3.695816 TGTGACTAATCTGAATCGCGAG 58.304 45.455 16.66 0.00 0.00 5.03
5563 7197 3.775661 TGTGACTAATCTGAATCGCGA 57.224 42.857 13.09 13.09 0.00 5.87
5564 7198 4.318333 CCATTGTGACTAATCTGAATCGCG 60.318 45.833 0.00 0.00 0.00 5.87
5565 7199 4.024556 CCCATTGTGACTAATCTGAATCGC 60.025 45.833 0.00 0.00 0.00 4.58
5566 7200 5.118990 ACCCATTGTGACTAATCTGAATCG 58.881 41.667 0.00 0.00 0.00 3.34
5567 7201 6.203723 GCTACCCATTGTGACTAATCTGAATC 59.796 42.308 0.00 0.00 0.00 2.52
5568 7202 6.058183 GCTACCCATTGTGACTAATCTGAAT 58.942 40.000 0.00 0.00 0.00 2.57
5569 7203 5.045942 TGCTACCCATTGTGACTAATCTGAA 60.046 40.000 0.00 0.00 0.00 3.02
5570 7204 4.469586 TGCTACCCATTGTGACTAATCTGA 59.530 41.667 0.00 0.00 0.00 3.27
5571 7205 4.769688 TGCTACCCATTGTGACTAATCTG 58.230 43.478 0.00 0.00 0.00 2.90
5572 7206 5.045578 AGTTGCTACCCATTGTGACTAATCT 60.046 40.000 0.00 0.00 0.00 2.40
5573 7207 5.186198 AGTTGCTACCCATTGTGACTAATC 58.814 41.667 0.00 0.00 0.00 1.75
5574 7208 5.179452 AGTTGCTACCCATTGTGACTAAT 57.821 39.130 0.00 0.00 0.00 1.73
5575 7209 4.634012 AGTTGCTACCCATTGTGACTAA 57.366 40.909 0.00 0.00 0.00 2.24
5576 7210 4.634012 AAGTTGCTACCCATTGTGACTA 57.366 40.909 0.00 0.00 0.00 2.59
5577 7211 3.508845 AAGTTGCTACCCATTGTGACT 57.491 42.857 0.00 0.00 0.00 3.41
5578 7212 4.392138 GTCTAAGTTGCTACCCATTGTGAC 59.608 45.833 0.00 0.00 0.00 3.67
5579 7213 4.286032 AGTCTAAGTTGCTACCCATTGTGA 59.714 41.667 0.00 0.00 0.00 3.58
5580 7214 4.579869 AGTCTAAGTTGCTACCCATTGTG 58.420 43.478 0.00 0.00 0.00 3.33
5581 7215 4.910458 AGTCTAAGTTGCTACCCATTGT 57.090 40.909 0.00 0.00 0.00 2.71
5582 7216 5.978814 ACTAGTCTAAGTTGCTACCCATTG 58.021 41.667 0.00 0.00 0.00 2.82
5583 7217 7.729124 TTACTAGTCTAAGTTGCTACCCATT 57.271 36.000 0.00 0.00 0.00 3.16
5584 7218 7.344871 ACATTACTAGTCTAAGTTGCTACCCAT 59.655 37.037 0.00 0.00 0.00 4.00
5585 7219 6.666546 ACATTACTAGTCTAAGTTGCTACCCA 59.333 38.462 0.00 0.00 0.00 4.51
5586 7220 7.110043 ACATTACTAGTCTAAGTTGCTACCC 57.890 40.000 0.00 0.00 0.00 3.69
5587 7221 9.513727 GTAACATTACTAGTCTAAGTTGCTACC 57.486 37.037 0.00 0.00 0.00 3.18
5591 7225 9.513727 GGTAGTAACATTACTAGTCTAAGTTGC 57.486 37.037 11.02 4.68 44.40 4.17
5598 7232 9.835389 CACTAGAGGTAGTAACATTACTAGTCT 57.165 37.037 18.75 18.75 44.40 3.24
5599 7233 9.829507 TCACTAGAGGTAGTAACATTACTAGTC 57.170 37.037 11.02 10.75 44.40 2.59
5603 7237 9.344772 CTCATCACTAGAGGTAGTAACATTACT 57.655 37.037 9.19 9.19 45.39 2.24
5604 7238 9.122779 ACTCATCACTAGAGGTAGTAACATTAC 57.877 37.037 0.00 0.00 37.40 1.89
5606 7240 9.696572 TTACTCATCACTAGAGGTAGTAACATT 57.303 33.333 0.00 0.00 37.40 2.71
5607 7241 9.122779 GTTACTCATCACTAGAGGTAGTAACAT 57.877 37.037 21.17 0.00 41.74 2.71
5608 7242 8.105197 TGTTACTCATCACTAGAGGTAGTAACA 58.895 37.037 22.93 22.93 44.64 2.41
5609 7243 8.503458 TGTTACTCATCACTAGAGGTAGTAAC 57.497 38.462 20.29 20.29 42.02 2.50
5612 7246 9.290988 CATATGTTACTCATCACTAGAGGTAGT 57.709 37.037 0.00 0.00 37.69 2.73
5613 7247 9.290988 ACATATGTTACTCATCACTAGAGGTAG 57.709 37.037 1.41 0.00 37.43 3.18
5614 7248 9.067986 CACATATGTTACTCATCACTAGAGGTA 57.932 37.037 5.37 0.00 37.43 3.08
5615 7249 7.470702 GCACATATGTTACTCATCACTAGAGGT 60.471 40.741 5.37 0.00 37.43 3.85
5616 7250 6.865726 GCACATATGTTACTCATCACTAGAGG 59.134 42.308 5.37 0.00 37.43 3.69
5619 7253 5.631096 CCGCACATATGTTACTCATCACTAG 59.369 44.000 5.37 0.00 37.91 2.57
5625 7259 4.119862 GACACCGCACATATGTTACTCAT 58.880 43.478 5.37 0.00 40.25 2.90
5626 7260 3.056465 TGACACCGCACATATGTTACTCA 60.056 43.478 5.37 0.00 0.00 3.41
5635 7269 1.528129 TTTGCATGACACCGCACATA 58.472 45.000 0.00 0.00 38.00 2.29
5641 7275 2.772568 TGAAGTTTTGCATGACACCG 57.227 45.000 0.00 0.00 0.00 4.94
5672 7306 8.982723 ACACATACCAAGACAAGATAAGTCTAT 58.017 33.333 0.00 0.00 45.11 1.98
5679 7313 6.946340 ACATCACACATACCAAGACAAGATA 58.054 36.000 0.00 0.00 0.00 1.98
5729 7363 8.181573 GCGAGTAATTAATGAGGAAAAATGACA 58.818 33.333 0.00 0.00 0.00 3.58
5731 7365 7.466725 CGGCGAGTAATTAATGAGGAAAAATGA 60.467 37.037 0.00 0.00 0.00 2.57
5733 7367 6.725246 CGGCGAGTAATTAATGAGGAAAAAT 58.275 36.000 0.00 0.00 0.00 1.82
5734 7368 5.448089 GCGGCGAGTAATTAATGAGGAAAAA 60.448 40.000 12.98 0.00 0.00 1.94
5754 7389 0.803380 GGCAAAACAGATGATGCGGC 60.803 55.000 0.00 0.00 39.66 6.53
5792 7427 2.467826 GCAACGGCTGGAGATGCTC 61.468 63.158 0.00 0.00 36.96 4.26
5793 7428 2.437359 GCAACGGCTGGAGATGCT 60.437 61.111 0.00 0.00 36.96 3.79
5794 7429 3.869272 CGCAACGGCTGGAGATGC 61.869 66.667 0.00 1.05 38.10 3.91
5811 7446 1.005294 TCCAGACGACGCTTTTACGC 61.005 55.000 0.00 0.00 36.19 4.42
5812 7447 0.982673 CTCCAGACGACGCTTTTACG 59.017 55.000 0.00 0.00 39.50 3.18
5813 7448 1.347320 CCTCCAGACGACGCTTTTAC 58.653 55.000 0.00 0.00 0.00 2.01
5814 7449 0.389426 GCCTCCAGACGACGCTTTTA 60.389 55.000 0.00 0.00 0.00 1.52
5815 7450 1.668151 GCCTCCAGACGACGCTTTT 60.668 57.895 0.00 0.00 0.00 2.27
5816 7451 2.048127 GCCTCCAGACGACGCTTT 60.048 61.111 0.00 0.00 0.00 3.51
5817 7452 4.421479 CGCCTCCAGACGACGCTT 62.421 66.667 0.00 0.00 0.00 4.68
5820 7455 2.504244 GTTCGCCTCCAGACGACG 60.504 66.667 0.00 0.00 38.17 5.12
5821 7456 2.126031 GGTTCGCCTCCAGACGAC 60.126 66.667 0.00 0.00 38.17 4.34
5823 7458 4.796231 CCGGTTCGCCTCCAGACG 62.796 72.222 0.00 0.00 34.30 4.18
5834 9082 1.350665 CCGATTTTAGCGCCGGTTC 59.649 57.895 2.29 0.00 37.40 3.62
5836 9084 3.199891 GCCGATTTTAGCGCCGGT 61.200 61.111 19.24 0.00 43.51 5.28
5837 9085 4.293626 CGCCGATTTTAGCGCCGG 62.294 66.667 15.00 15.00 46.50 6.13
5842 9090 3.107447 CCCCACGCCGATTTTAGC 58.893 61.111 0.00 0.00 0.00 3.09
5843 9091 1.029947 AAGCCCCACGCCGATTTTAG 61.030 55.000 0.00 0.00 38.78 1.85
5844 9092 0.609681 AAAGCCCCACGCCGATTTTA 60.610 50.000 0.00 0.00 38.78 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.