Multiple sequence alignment - TraesCS3A01G190900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G190900 chr3A 100.000 2237 0 0 1 2237 240357308 240355072 0.000000e+00 4132.0
1 TraesCS3A01G190900 chr3A 94.355 248 13 1 317 564 601405237 601404991 1.620000e-101 379.0
2 TraesCS3A01G190900 chr3A 94.650 243 13 0 315 557 697028266 697028508 5.830000e-101 377.0
3 TraesCS3A01G190900 chr2D 91.851 724 56 2 1506 2227 102885383 102884661 0.000000e+00 1007.0
4 TraesCS3A01G190900 chr2D 91.059 727 60 4 1504 2227 592268893 592269617 0.000000e+00 977.0
5 TraesCS3A01G190900 chr2D 92.500 40 3 0 823 862 86072226 86072187 8.630000e-05 58.4
6 TraesCS3A01G190900 chr1D 91.944 720 52 5 1510 2227 338879367 338878652 0.000000e+00 1003.0
7 TraesCS3A01G190900 chr1D 91.436 724 58 3 1504 2225 398933462 398934183 0.000000e+00 990.0
8 TraesCS3A01G190900 chr1D 90.385 52 5 0 813 864 39576004 39576055 3.990000e-08 69.4
9 TraesCS3A01G190900 chr6D 91.274 722 56 6 1510 2227 111066284 111065566 0.000000e+00 977.0
10 TraesCS3A01G190900 chr3D 90.822 730 61 4 1503 2227 119726513 119727241 0.000000e+00 972.0
11 TraesCS3A01G190900 chr3D 92.759 580 28 4 941 1506 186625234 186625813 0.000000e+00 826.0
12 TraesCS3A01G190900 chr3D 92.188 128 5 3 590 716 186624562 186624685 2.280000e-40 176.0
13 TraesCS3A01G190900 chr3D 89.216 102 11 0 1064 1165 504044409 504044510 6.480000e-26 128.0
14 TraesCS3A01G190900 chr3D 95.000 40 2 0 823 862 365799394 365799355 1.850000e-06 63.9
15 TraesCS3A01G190900 chr3D 100.000 28 0 0 823 850 358505200 358505173 4.000000e-03 52.8
16 TraesCS3A01G190900 chr6A 92.846 671 45 3 1559 2227 615302515 615301846 0.000000e+00 970.0
17 TraesCS3A01G190900 chr6A 90.997 722 56 8 1510 2227 603182400 603181684 0.000000e+00 965.0
18 TraesCS3A01G190900 chr6A 90.548 730 62 6 1501 2225 284806236 284806963 0.000000e+00 959.0
19 TraesCS3A01G190900 chr6A 94.498 309 17 0 6 314 609268157 609268465 5.590000e-131 477.0
20 TraesCS3A01G190900 chr6A 93.200 250 15 2 317 565 5356258 5356010 1.260000e-97 366.0
21 TraesCS3A01G190900 chr6A 91.667 48 4 0 823 870 205114028 205113981 1.430000e-07 67.6
22 TraesCS3A01G190900 chr6A 100.000 29 0 0 822 850 20232822 20232850 1.000000e-03 54.7
23 TraesCS3A01G190900 chr3B 92.308 520 22 4 941 1442 267239429 267239948 0.000000e+00 723.0
24 TraesCS3A01G190900 chr3B 92.520 254 17 2 309 561 8013431 8013683 1.630000e-96 363.0
25 TraesCS3A01G190900 chr3B 96.250 80 2 1 1428 1506 267266518 267266597 1.800000e-26 130.0
26 TraesCS3A01G190900 chr3B 88.235 102 12 0 1064 1165 665457712 665457813 3.020000e-24 122.0
27 TraesCS3A01G190900 chr4D 90.461 304 28 1 14 316 12095325 12095628 1.240000e-107 399.0
28 TraesCS3A01G190900 chr4A 95.041 242 12 0 316 557 164527812 164527571 4.510000e-102 381.0
29 TraesCS3A01G190900 chr5A 95.021 241 12 0 317 557 8506022 8506262 1.620000e-101 379.0
30 TraesCS3A01G190900 chr6B 94.000 250 14 1 317 566 21064543 21064791 5.830000e-101 377.0
31 TraesCS3A01G190900 chr2A 93.976 249 15 0 315 563 84977771 84977523 5.830000e-101 377.0
32 TraesCS3A01G190900 chr2A 94.650 243 11 2 317 558 753083163 753083404 2.100000e-100 375.0
33 TraesCS3A01G190900 chr1A 93.902 246 15 0 315 560 516764367 516764612 2.710000e-99 372.0
34 TraesCS3A01G190900 chr1A 86.842 228 28 2 90 317 459162525 459162300 1.030000e-63 254.0
35 TraesCS3A01G190900 chr1A 86.842 228 28 2 90 317 459168948 459168723 1.030000e-63 254.0
36 TraesCS3A01G190900 chr5B 93.254 252 12 5 316 565 696346960 696347208 1.260000e-97 366.0
37 TraesCS3A01G190900 chr4B 91.698 265 17 5 303 565 72900034 72900295 1.630000e-96 363.0
38 TraesCS3A01G190900 chr7A 81.768 181 28 5 119 297 658982432 658982255 1.790000e-31 147.0
39 TraesCS3A01G190900 chrUn 94.872 39 2 0 823 861 46119863 46119901 6.670000e-06 62.1
40 TraesCS3A01G190900 chr7B 84.058 69 4 5 872 934 21562010 21562077 2.400000e-05 60.2
41 TraesCS3A01G190900 chr5D 90.000 40 4 0 823 862 10040819 10040780 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G190900 chr3A 240355072 240357308 2236 True 4132 4132 100.0000 1 2237 1 chr3A.!!$R1 2236
1 TraesCS3A01G190900 chr2D 102884661 102885383 722 True 1007 1007 91.8510 1506 2227 1 chr2D.!!$R2 721
2 TraesCS3A01G190900 chr2D 592268893 592269617 724 False 977 977 91.0590 1504 2227 1 chr2D.!!$F1 723
3 TraesCS3A01G190900 chr1D 338878652 338879367 715 True 1003 1003 91.9440 1510 2227 1 chr1D.!!$R1 717
4 TraesCS3A01G190900 chr1D 398933462 398934183 721 False 990 990 91.4360 1504 2225 1 chr1D.!!$F2 721
5 TraesCS3A01G190900 chr6D 111065566 111066284 718 True 977 977 91.2740 1510 2227 1 chr6D.!!$R1 717
6 TraesCS3A01G190900 chr3D 119726513 119727241 728 False 972 972 90.8220 1503 2227 1 chr3D.!!$F1 724
7 TraesCS3A01G190900 chr3D 186624562 186625813 1251 False 501 826 92.4735 590 1506 2 chr3D.!!$F3 916
8 TraesCS3A01G190900 chr6A 615301846 615302515 669 True 970 970 92.8460 1559 2227 1 chr6A.!!$R4 668
9 TraesCS3A01G190900 chr6A 603181684 603182400 716 True 965 965 90.9970 1510 2227 1 chr6A.!!$R3 717
10 TraesCS3A01G190900 chr6A 284806236 284806963 727 False 959 959 90.5480 1501 2225 1 chr6A.!!$F2 724
11 TraesCS3A01G190900 chr3B 267239429 267239948 519 False 723 723 92.3080 941 1442 1 chr3B.!!$F2 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.027586 AAAATATGCGCGCCTCGTTC 59.972 50.0 30.77 0.0 41.07 3.95 F
185 186 0.031314 CATCAGCGCAGGATACGTCT 59.969 55.0 11.47 0.0 46.39 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1598 0.036952 CAGCAGCGAGGGAGAGAAAA 60.037 55.0 0.00 0.00 0.0 2.29 R
2135 2598 0.179134 GTAGCCTTCGACACGATGCT 60.179 55.0 17.49 17.49 43.2 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.566197 AGAGTTCAAATCTTCTTTGCGATT 57.434 33.333 0.00 0.00 0.00 3.34
24 25 7.672983 AGAGTTCAAATCTTCTTTGCGATTA 57.327 32.000 0.00 0.00 30.19 1.75
25 26 8.099364 AGAGTTCAAATCTTCTTTGCGATTAA 57.901 30.769 0.00 0.00 30.19 1.40
26 27 8.233190 AGAGTTCAAATCTTCTTTGCGATTAAG 58.767 33.333 0.00 0.00 30.19 1.85
27 28 7.875971 AGTTCAAATCTTCTTTGCGATTAAGT 58.124 30.769 0.00 0.00 30.19 2.24
28 29 8.352942 AGTTCAAATCTTCTTTGCGATTAAGTT 58.647 29.630 0.00 0.00 30.19 2.66
29 30 8.420189 GTTCAAATCTTCTTTGCGATTAAGTTG 58.580 33.333 0.00 0.00 30.19 3.16
30 31 7.648142 TCAAATCTTCTTTGCGATTAAGTTGT 58.352 30.769 0.00 0.00 30.19 3.32
31 32 8.779303 TCAAATCTTCTTTGCGATTAAGTTGTA 58.221 29.630 0.00 0.00 30.19 2.41
32 33 9.559958 CAAATCTTCTTTGCGATTAAGTTGTAT 57.440 29.630 0.00 0.00 30.19 2.29
33 34 9.774742 AAATCTTCTTTGCGATTAAGTTGTATC 57.225 29.630 0.00 0.00 30.19 2.24
34 35 7.303634 TCTTCTTTGCGATTAAGTTGTATCC 57.696 36.000 0.00 0.00 0.00 2.59
35 36 6.876789 TCTTCTTTGCGATTAAGTTGTATCCA 59.123 34.615 0.00 0.00 0.00 3.41
36 37 7.552687 TCTTCTTTGCGATTAAGTTGTATCCAT 59.447 33.333 0.00 0.00 0.00 3.41
37 38 7.015226 TCTTTGCGATTAAGTTGTATCCATG 57.985 36.000 0.00 0.00 0.00 3.66
38 39 6.597672 TCTTTGCGATTAAGTTGTATCCATGT 59.402 34.615 0.00 0.00 0.00 3.21
39 40 5.733226 TGCGATTAAGTTGTATCCATGTG 57.267 39.130 0.00 0.00 0.00 3.21
40 41 5.182487 TGCGATTAAGTTGTATCCATGTGT 58.818 37.500 0.00 0.00 0.00 3.72
41 42 5.064579 TGCGATTAAGTTGTATCCATGTGTG 59.935 40.000 0.00 0.00 0.00 3.82
42 43 5.064707 GCGATTAAGTTGTATCCATGTGTGT 59.935 40.000 0.00 0.00 0.00 3.72
43 44 6.403200 GCGATTAAGTTGTATCCATGTGTGTT 60.403 38.462 0.00 0.00 0.00 3.32
44 45 7.201574 GCGATTAAGTTGTATCCATGTGTGTTA 60.202 37.037 0.00 0.00 0.00 2.41
45 46 8.826710 CGATTAAGTTGTATCCATGTGTGTTAT 58.173 33.333 0.00 0.00 0.00 1.89
50 51 8.506168 AGTTGTATCCATGTGTGTTATTAAGG 57.494 34.615 0.00 0.00 0.00 2.69
51 52 7.556275 AGTTGTATCCATGTGTGTTATTAAGGG 59.444 37.037 0.00 0.00 0.00 3.95
52 53 6.361433 TGTATCCATGTGTGTTATTAAGGGG 58.639 40.000 0.00 0.00 0.00 4.79
53 54 3.626930 TCCATGTGTGTTATTAAGGGGC 58.373 45.455 0.00 0.00 0.00 5.80
54 55 3.268334 TCCATGTGTGTTATTAAGGGGCT 59.732 43.478 0.00 0.00 0.00 5.19
55 56 4.475381 TCCATGTGTGTTATTAAGGGGCTA 59.525 41.667 0.00 0.00 0.00 3.93
56 57 4.578928 CCATGTGTGTTATTAAGGGGCTAC 59.421 45.833 0.00 0.00 0.00 3.58
57 58 5.437060 CATGTGTGTTATTAAGGGGCTACT 58.563 41.667 0.00 0.00 0.00 2.57
58 59 4.839121 TGTGTGTTATTAAGGGGCTACTG 58.161 43.478 0.00 0.00 0.00 2.74
59 60 3.626217 GTGTGTTATTAAGGGGCTACTGC 59.374 47.826 0.00 0.00 38.76 4.40
60 61 3.521937 TGTGTTATTAAGGGGCTACTGCT 59.478 43.478 0.00 0.00 39.59 4.24
61 62 4.018779 TGTGTTATTAAGGGGCTACTGCTT 60.019 41.667 0.00 0.00 39.59 3.91
62 63 5.190132 TGTGTTATTAAGGGGCTACTGCTTA 59.810 40.000 0.00 0.00 39.59 3.09
63 64 6.117488 GTGTTATTAAGGGGCTACTGCTTAA 58.883 40.000 0.00 0.00 39.59 1.85
64 65 6.771267 GTGTTATTAAGGGGCTACTGCTTAAT 59.229 38.462 0.00 0.00 39.59 1.40
65 66 7.284716 GTGTTATTAAGGGGCTACTGCTTAATT 59.715 37.037 0.00 0.00 39.59 1.40
66 67 8.496088 TGTTATTAAGGGGCTACTGCTTAATTA 58.504 33.333 0.00 0.00 39.59 1.40
67 68 9.346005 GTTATTAAGGGGCTACTGCTTAATTAA 57.654 33.333 0.00 0.00 39.59 1.40
68 69 9.924010 TTATTAAGGGGCTACTGCTTAATTAAA 57.076 29.630 0.00 0.00 39.59 1.52
71 72 7.818997 AAGGGGCTACTGCTTAATTAAATAC 57.181 36.000 0.00 0.00 39.59 1.89
72 73 6.906848 AGGGGCTACTGCTTAATTAAATACA 58.093 36.000 0.00 0.00 39.59 2.29
73 74 7.351166 AGGGGCTACTGCTTAATTAAATACAA 58.649 34.615 0.00 0.00 39.59 2.41
74 75 7.837187 AGGGGCTACTGCTTAATTAAATACAAA 59.163 33.333 0.00 0.00 39.59 2.83
75 76 8.471609 GGGGCTACTGCTTAATTAAATACAAAA 58.528 33.333 0.00 0.00 39.59 2.44
76 77 9.297586 GGGCTACTGCTTAATTAAATACAAAAC 57.702 33.333 0.00 0.00 39.59 2.43
77 78 9.849166 GGCTACTGCTTAATTAAATACAAAACA 57.151 29.630 0.00 0.00 39.59 2.83
81 82 9.705290 ACTGCTTAATTAAATACAAAACAAGGG 57.295 29.630 0.00 0.00 0.00 3.95
82 83 9.150348 CTGCTTAATTAAATACAAAACAAGGGG 57.850 33.333 0.00 0.00 0.00 4.79
83 84 8.652290 TGCTTAATTAAATACAAAACAAGGGGT 58.348 29.630 0.00 0.00 0.00 4.95
84 85 8.931775 GCTTAATTAAATACAAAACAAGGGGTG 58.068 33.333 0.00 0.00 0.00 4.61
85 86 9.990360 CTTAATTAAATACAAAACAAGGGGTGT 57.010 29.630 0.00 0.00 44.64 4.16
101 102 9.516546 ACAAGGGGTGTTTTTGTAAAATAAAAA 57.483 25.926 0.00 0.00 37.01 1.94
109 110 9.517361 TGTTTTTGTAAAATAAAAATATGCGCG 57.483 25.926 0.00 0.00 38.71 6.86
110 111 8.501276 GTTTTTGTAAAATAAAAATATGCGCGC 58.499 29.630 27.26 27.26 38.71 6.86
111 112 5.874892 TGTAAAATAAAAATATGCGCGCC 57.125 34.783 30.77 11.42 0.00 6.53
112 113 5.583495 TGTAAAATAAAAATATGCGCGCCT 58.417 33.333 30.77 22.56 0.00 5.52
113 114 5.683743 TGTAAAATAAAAATATGCGCGCCTC 59.316 36.000 30.77 0.92 0.00 4.70
114 115 2.594529 ATAAAAATATGCGCGCCTCG 57.405 45.000 30.77 0.00 42.12 4.63
115 116 1.292061 TAAAAATATGCGCGCCTCGT 58.708 45.000 30.77 14.46 41.07 4.18
116 117 0.450184 AAAAATATGCGCGCCTCGTT 59.550 45.000 30.77 14.91 41.07 3.85
117 118 0.027586 AAAATATGCGCGCCTCGTTC 59.972 50.000 30.77 0.00 41.07 3.95
118 119 1.087202 AAATATGCGCGCCTCGTTCA 61.087 50.000 30.77 8.32 41.07 3.18
119 120 1.087202 AATATGCGCGCCTCGTTCAA 61.087 50.000 30.77 7.41 41.07 2.69
120 121 1.490693 ATATGCGCGCCTCGTTCAAG 61.491 55.000 30.77 0.00 41.07 3.02
123 124 4.139420 CGCGCCTCGTTCAAGCTG 62.139 66.667 0.00 0.00 0.00 4.24
124 125 3.044305 GCGCCTCGTTCAAGCTGT 61.044 61.111 0.00 0.00 0.00 4.40
125 126 2.607892 GCGCCTCGTTCAAGCTGTT 61.608 57.895 0.00 0.00 0.00 3.16
126 127 1.493311 CGCCTCGTTCAAGCTGTTC 59.507 57.895 0.00 0.00 0.00 3.18
127 128 1.869690 GCCTCGTTCAAGCTGTTCC 59.130 57.895 0.00 0.00 0.00 3.62
128 129 1.578206 GCCTCGTTCAAGCTGTTCCC 61.578 60.000 0.00 0.00 0.00 3.97
129 130 0.955919 CCTCGTTCAAGCTGTTCCCC 60.956 60.000 0.00 0.00 0.00 4.81
130 131 0.250295 CTCGTTCAAGCTGTTCCCCA 60.250 55.000 0.00 0.00 0.00 4.96
131 132 0.400213 TCGTTCAAGCTGTTCCCCAT 59.600 50.000 0.00 0.00 0.00 4.00
132 133 0.804989 CGTTCAAGCTGTTCCCCATC 59.195 55.000 0.00 0.00 0.00 3.51
133 134 1.881925 CGTTCAAGCTGTTCCCCATCA 60.882 52.381 0.00 0.00 0.00 3.07
134 135 2.450476 GTTCAAGCTGTTCCCCATCAT 58.550 47.619 0.00 0.00 0.00 2.45
135 136 2.827921 GTTCAAGCTGTTCCCCATCATT 59.172 45.455 0.00 0.00 0.00 2.57
136 137 2.449464 TCAAGCTGTTCCCCATCATTG 58.551 47.619 0.00 0.00 0.00 2.82
137 138 2.041485 TCAAGCTGTTCCCCATCATTGA 59.959 45.455 0.00 0.00 0.00 2.57
138 139 2.134789 AGCTGTTCCCCATCATTGAC 57.865 50.000 0.00 0.00 0.00 3.18
139 140 1.355381 AGCTGTTCCCCATCATTGACA 59.645 47.619 0.00 0.00 0.00 3.58
140 141 2.170166 GCTGTTCCCCATCATTGACAA 58.830 47.619 0.00 0.00 0.00 3.18
141 142 2.762327 GCTGTTCCCCATCATTGACAAT 59.238 45.455 0.00 0.00 0.00 2.71
142 143 3.429822 GCTGTTCCCCATCATTGACAATG 60.430 47.826 20.15 20.15 40.28 2.82
143 144 3.098377 TGTTCCCCATCATTGACAATGG 58.902 45.455 24.43 12.82 41.81 3.16
149 150 4.514781 CCATCATTGACAATGGGCATAG 57.485 45.455 24.43 10.45 39.04 2.23
150 151 3.305813 CCATCATTGACAATGGGCATAGC 60.306 47.826 24.43 0.00 39.04 2.97
161 162 4.131376 GCATAGCCACGCTGACAT 57.869 55.556 0.00 0.00 40.10 3.06
162 163 1.645455 GCATAGCCACGCTGACATG 59.355 57.895 0.00 0.00 40.10 3.21
163 164 1.645455 CATAGCCACGCTGACATGC 59.355 57.895 0.00 0.00 40.10 4.06
164 165 1.524621 ATAGCCACGCTGACATGCC 60.525 57.895 0.00 0.00 40.10 4.40
165 166 2.256072 ATAGCCACGCTGACATGCCA 62.256 55.000 0.00 0.00 40.10 4.92
166 167 4.107051 GCCACGCTGACATGCCAC 62.107 66.667 0.00 0.00 0.00 5.01
167 168 2.669229 CCACGCTGACATGCCACA 60.669 61.111 0.00 0.00 0.00 4.17
168 169 2.042259 CCACGCTGACATGCCACAT 61.042 57.895 0.00 0.00 0.00 3.21
169 170 1.426621 CACGCTGACATGCCACATC 59.573 57.895 0.00 0.00 0.00 3.06
170 171 1.003476 ACGCTGACATGCCACATCA 60.003 52.632 0.00 0.00 0.00 3.07
171 172 1.022982 ACGCTGACATGCCACATCAG 61.023 55.000 6.02 6.02 42.33 2.90
173 174 1.719709 CTGACATGCCACATCAGCG 59.280 57.895 0.00 0.00 33.93 5.18
174 175 2.319011 CTGACATGCCACATCAGCGC 62.319 60.000 0.00 0.00 33.93 5.92
175 176 2.360225 ACATGCCACATCAGCGCA 60.360 55.556 11.47 0.00 36.84 6.09
176 177 2.319011 GACATGCCACATCAGCGCAG 62.319 60.000 11.47 0.00 35.66 5.18
177 178 2.827190 ATGCCACATCAGCGCAGG 60.827 61.111 11.47 0.20 35.66 4.85
178 179 3.333899 ATGCCACATCAGCGCAGGA 62.334 57.895 11.47 7.31 35.66 3.86
179 180 2.515523 GCCACATCAGCGCAGGAT 60.516 61.111 11.47 9.74 0.00 3.24
180 181 1.227645 GCCACATCAGCGCAGGATA 60.228 57.895 11.47 0.00 0.00 2.59
181 182 1.502163 GCCACATCAGCGCAGGATAC 61.502 60.000 11.47 0.00 0.00 2.24
182 183 1.217585 CCACATCAGCGCAGGATACG 61.218 60.000 11.47 6.56 46.39 3.06
183 184 0.528466 CACATCAGCGCAGGATACGT 60.528 55.000 11.47 4.75 46.39 3.57
184 185 0.249073 ACATCAGCGCAGGATACGTC 60.249 55.000 11.47 0.00 46.39 4.34
185 186 0.031314 CATCAGCGCAGGATACGTCT 59.969 55.000 11.47 0.00 46.39 4.18
186 187 0.031314 ATCAGCGCAGGATACGTCTG 59.969 55.000 11.47 0.00 46.39 3.51
187 188 1.029947 TCAGCGCAGGATACGTCTGA 61.030 55.000 11.47 0.00 46.39 3.27
188 189 0.179137 CAGCGCAGGATACGTCTGAA 60.179 55.000 11.47 0.00 46.39 3.02
189 190 0.747255 AGCGCAGGATACGTCTGAAT 59.253 50.000 11.47 0.00 46.39 2.57
190 191 1.954382 AGCGCAGGATACGTCTGAATA 59.046 47.619 11.47 0.00 46.39 1.75
191 192 2.052157 GCGCAGGATACGTCTGAATAC 58.948 52.381 0.30 0.00 46.39 1.89
192 193 2.543031 GCGCAGGATACGTCTGAATACA 60.543 50.000 0.30 0.00 46.39 2.29
193 194 3.702330 CGCAGGATACGTCTGAATACAA 58.298 45.455 6.91 0.00 46.39 2.41
194 195 3.731216 CGCAGGATACGTCTGAATACAAG 59.269 47.826 6.91 0.00 46.39 3.16
195 196 3.491267 GCAGGATACGTCTGAATACAAGC 59.509 47.826 6.91 0.00 46.39 4.01
196 197 4.682787 CAGGATACGTCTGAATACAAGCA 58.317 43.478 0.00 0.00 46.39 3.91
197 198 5.109210 CAGGATACGTCTGAATACAAGCAA 58.891 41.667 0.00 0.00 46.39 3.91
198 199 5.580691 CAGGATACGTCTGAATACAAGCAAA 59.419 40.000 0.00 0.00 46.39 3.68
199 200 5.812642 AGGATACGTCTGAATACAAGCAAAG 59.187 40.000 0.00 0.00 46.39 2.77
200 201 5.581085 GGATACGTCTGAATACAAGCAAAGT 59.419 40.000 0.00 0.00 0.00 2.66
201 202 4.732285 ACGTCTGAATACAAGCAAAGTG 57.268 40.909 0.00 0.00 0.00 3.16
202 203 4.377021 ACGTCTGAATACAAGCAAAGTGA 58.623 39.130 0.00 0.00 0.00 3.41
203 204 4.211374 ACGTCTGAATACAAGCAAAGTGAC 59.789 41.667 0.00 0.00 0.00 3.67
204 205 4.377431 CGTCTGAATACAAGCAAAGTGACC 60.377 45.833 0.00 0.00 0.00 4.02
205 206 3.745975 TCTGAATACAAGCAAAGTGACCG 59.254 43.478 0.00 0.00 0.00 4.79
206 207 3.472652 TGAATACAAGCAAAGTGACCGT 58.527 40.909 0.00 0.00 0.00 4.83
207 208 4.633175 TGAATACAAGCAAAGTGACCGTA 58.367 39.130 0.00 0.00 0.00 4.02
208 209 5.242434 TGAATACAAGCAAAGTGACCGTAT 58.758 37.500 0.00 0.00 0.00 3.06
209 210 5.703592 TGAATACAAGCAAAGTGACCGTATT 59.296 36.000 0.00 0.00 32.36 1.89
210 211 6.205853 TGAATACAAGCAAAGTGACCGTATTT 59.794 34.615 0.00 0.00 30.44 1.40
211 212 4.223320 ACAAGCAAAGTGACCGTATTTG 57.777 40.909 0.00 0.00 37.07 2.32
218 219 5.331902 CAAAGTGACCGTATTTGCATAAGG 58.668 41.667 0.00 0.00 39.70 2.69
219 220 4.481368 AGTGACCGTATTTGCATAAGGA 57.519 40.909 6.34 0.00 36.81 3.36
220 221 5.036117 AGTGACCGTATTTGCATAAGGAT 57.964 39.130 6.34 0.00 36.81 3.24
221 222 4.816385 AGTGACCGTATTTGCATAAGGATG 59.184 41.667 6.34 0.00 36.81 3.51
235 236 6.551385 CATAAGGATGCAAGTTAGATGACC 57.449 41.667 0.00 0.00 0.00 4.02
236 237 4.574674 AAGGATGCAAGTTAGATGACCA 57.425 40.909 0.00 0.00 0.00 4.02
237 238 4.785346 AGGATGCAAGTTAGATGACCAT 57.215 40.909 0.00 0.00 0.00 3.55
238 239 5.894298 AGGATGCAAGTTAGATGACCATA 57.106 39.130 0.00 0.00 0.00 2.74
239 240 6.252599 AGGATGCAAGTTAGATGACCATAA 57.747 37.500 0.00 0.00 0.00 1.90
240 241 6.662755 AGGATGCAAGTTAGATGACCATAAA 58.337 36.000 0.00 0.00 0.00 1.40
241 242 7.293073 AGGATGCAAGTTAGATGACCATAAAT 58.707 34.615 0.00 0.00 0.00 1.40
242 243 7.781693 AGGATGCAAGTTAGATGACCATAAATT 59.218 33.333 0.00 0.00 0.00 1.82
243 244 8.416329 GGATGCAAGTTAGATGACCATAAATTT 58.584 33.333 0.00 0.00 0.00 1.82
244 245 9.241317 GATGCAAGTTAGATGACCATAAATTTG 57.759 33.333 0.00 0.00 0.00 2.32
245 246 8.121305 TGCAAGTTAGATGACCATAAATTTGT 57.879 30.769 0.00 0.00 0.00 2.83
246 247 9.237187 TGCAAGTTAGATGACCATAAATTTGTA 57.763 29.630 0.00 6.88 0.00 2.41
281 282 7.650834 TTTAGCACCAAATTAAACATTGAGC 57.349 32.000 0.00 5.14 0.00 4.26
282 283 4.236935 AGCACCAAATTAAACATTGAGCG 58.763 39.130 0.00 0.00 34.65 5.03
283 284 3.987220 GCACCAAATTAAACATTGAGCGT 59.013 39.130 0.00 0.00 0.00 5.07
284 285 5.048364 AGCACCAAATTAAACATTGAGCGTA 60.048 36.000 0.00 0.00 34.65 4.42
285 286 5.631512 GCACCAAATTAAACATTGAGCGTAA 59.368 36.000 0.00 0.00 0.00 3.18
286 287 6.183359 GCACCAAATTAAACATTGAGCGTAAG 60.183 38.462 0.00 0.00 43.44 2.34
287 288 6.861055 CACCAAATTAAACATTGAGCGTAAGT 59.139 34.615 0.00 0.00 41.68 2.24
288 289 7.381139 CACCAAATTAAACATTGAGCGTAAGTT 59.619 33.333 0.00 0.00 41.68 2.66
289 290 7.381139 ACCAAATTAAACATTGAGCGTAAGTTG 59.619 33.333 0.00 0.00 41.68 3.16
290 291 7.381139 CCAAATTAAACATTGAGCGTAAGTTGT 59.619 33.333 0.00 0.00 41.68 3.32
291 292 9.388346 CAAATTAAACATTGAGCGTAAGTTGTA 57.612 29.630 0.00 0.00 41.68 2.41
293 294 9.554724 AATTAAACATTGAGCGTAAGTTGTATG 57.445 29.630 0.00 0.00 41.68 2.39
294 295 6.795098 AAACATTGAGCGTAAGTTGTATGA 57.205 33.333 0.00 0.00 41.68 2.15
295 296 5.779806 ACATTGAGCGTAAGTTGTATGAC 57.220 39.130 0.00 0.00 41.68 3.06
296 297 5.479306 ACATTGAGCGTAAGTTGTATGACT 58.521 37.500 0.00 0.00 41.68 3.41
297 298 5.348724 ACATTGAGCGTAAGTTGTATGACTG 59.651 40.000 0.00 0.00 41.68 3.51
298 299 3.250744 TGAGCGTAAGTTGTATGACTGC 58.749 45.455 0.00 0.00 41.68 4.40
299 300 3.250744 GAGCGTAAGTTGTATGACTGCA 58.749 45.455 0.00 0.00 41.68 4.41
300 301 3.861840 AGCGTAAGTTGTATGACTGCAT 58.138 40.909 0.00 0.00 41.68 3.96
301 302 3.618594 AGCGTAAGTTGTATGACTGCATG 59.381 43.478 0.00 0.00 41.68 4.06
302 303 3.370978 GCGTAAGTTGTATGACTGCATGT 59.629 43.478 0.00 0.00 41.68 3.21
303 304 4.724885 GCGTAAGTTGTATGACTGCATGTG 60.725 45.833 0.00 0.00 41.68 3.21
304 305 4.625311 CGTAAGTTGTATGACTGCATGTGA 59.375 41.667 0.00 0.00 35.94 3.58
305 306 5.291858 CGTAAGTTGTATGACTGCATGTGAT 59.708 40.000 0.00 0.00 35.94 3.06
306 307 6.475402 CGTAAGTTGTATGACTGCATGTGATA 59.525 38.462 0.00 0.00 35.94 2.15
307 308 7.169813 CGTAAGTTGTATGACTGCATGTGATAT 59.830 37.037 0.00 0.00 35.94 1.63
308 309 7.870509 AAGTTGTATGACTGCATGTGATATT 57.129 32.000 0.00 0.00 35.94 1.28
309 310 8.962884 AAGTTGTATGACTGCATGTGATATTA 57.037 30.769 0.00 0.00 35.94 0.98
310 311 9.565090 AAGTTGTATGACTGCATGTGATATTAT 57.435 29.630 0.00 0.00 35.94 1.28
311 312 9.212641 AGTTGTATGACTGCATGTGATATTATC 57.787 33.333 0.00 0.00 35.94 1.75
312 313 9.212641 GTTGTATGACTGCATGTGATATTATCT 57.787 33.333 5.33 0.00 35.94 1.98
313 314 8.992835 TGTATGACTGCATGTGATATTATCTC 57.007 34.615 5.33 2.49 35.94 2.75
314 315 8.587608 TGTATGACTGCATGTGATATTATCTCA 58.412 33.333 10.05 10.05 37.22 3.27
315 316 9.428097 GTATGACTGCATGTGATATTATCTCAA 57.572 33.333 11.32 0.00 36.50 3.02
318 319 9.428097 TGACTGCATGTGATATTATCTCAATAC 57.572 33.333 11.32 6.04 36.50 1.89
319 320 9.650539 GACTGCATGTGATATTATCTCAATACT 57.349 33.333 11.32 0.00 36.50 2.12
320 321 9.650539 ACTGCATGTGATATTATCTCAATACTC 57.349 33.333 11.32 2.68 36.50 2.59
321 322 9.096160 CTGCATGTGATATTATCTCAATACTCC 57.904 37.037 11.32 0.82 36.50 3.85
322 323 8.043113 TGCATGTGATATTATCTCAATACTCCC 58.957 37.037 11.32 0.00 36.50 4.30
323 324 8.263640 GCATGTGATATTATCTCAATACTCCCT 58.736 37.037 11.32 0.00 36.50 4.20
324 325 9.814899 CATGTGATATTATCTCAATACTCCCTC 57.185 37.037 11.32 0.00 36.50 4.30
325 326 8.367660 TGTGATATTATCTCAATACTCCCTCC 57.632 38.462 6.07 0.00 30.64 4.30
326 327 7.955750 TGTGATATTATCTCAATACTCCCTCCA 59.044 37.037 6.07 0.00 30.64 3.86
327 328 8.986991 GTGATATTATCTCAATACTCCCTCCAT 58.013 37.037 5.33 0.00 0.00 3.41
328 329 9.566331 TGATATTATCTCAATACTCCCTCCATT 57.434 33.333 5.33 0.00 0.00 3.16
330 331 4.881019 ATCTCAATACTCCCTCCATTCG 57.119 45.455 0.00 0.00 0.00 3.34
331 332 3.910989 TCTCAATACTCCCTCCATTCGA 58.089 45.455 0.00 0.00 0.00 3.71
332 333 4.286707 TCTCAATACTCCCTCCATTCGAA 58.713 43.478 0.00 0.00 0.00 3.71
333 334 4.714802 TCTCAATACTCCCTCCATTCGAAA 59.285 41.667 0.00 0.00 0.00 3.46
334 335 5.188948 TCTCAATACTCCCTCCATTCGAAAA 59.811 40.000 0.00 0.00 0.00 2.29
335 336 6.001449 TCAATACTCCCTCCATTCGAAAAT 57.999 37.500 0.00 0.00 0.00 1.82
336 337 7.070696 TCTCAATACTCCCTCCATTCGAAAATA 59.929 37.037 0.00 0.00 0.00 1.40
337 338 7.745717 TCAATACTCCCTCCATTCGAAAATAT 58.254 34.615 0.00 0.00 0.00 1.28
338 339 8.876181 TCAATACTCCCTCCATTCGAAAATATA 58.124 33.333 0.00 0.00 0.00 0.86
339 340 9.155975 CAATACTCCCTCCATTCGAAAATATAG 57.844 37.037 0.00 0.00 0.00 1.31
340 341 6.749036 ACTCCCTCCATTCGAAAATATAGT 57.251 37.500 0.00 0.00 0.00 2.12
341 342 6.525629 ACTCCCTCCATTCGAAAATATAGTG 58.474 40.000 0.00 0.00 0.00 2.74
342 343 5.305585 TCCCTCCATTCGAAAATATAGTGC 58.694 41.667 0.00 0.00 0.00 4.40
343 344 4.152402 CCCTCCATTCGAAAATATAGTGCG 59.848 45.833 0.00 0.00 0.00 5.34
344 345 4.377431 CCTCCATTCGAAAATATAGTGCGC 60.377 45.833 0.00 0.00 0.00 6.09
345 346 3.496884 TCCATTCGAAAATATAGTGCGCC 59.503 43.478 4.18 0.00 0.00 6.53
346 347 3.364964 CCATTCGAAAATATAGTGCGCCC 60.365 47.826 4.18 0.00 0.00 6.13
347 348 1.493772 TCGAAAATATAGTGCGCCCG 58.506 50.000 4.18 0.00 0.00 6.13
348 349 0.110823 CGAAAATATAGTGCGCCCGC 60.111 55.000 4.18 5.60 42.35 6.13
349 350 0.110823 GAAAATATAGTGCGCCCGCG 60.111 55.000 4.18 4.36 45.51 6.46
363 364 2.736995 CGCGCTTTCCGAGGTTCA 60.737 61.111 5.56 0.00 40.02 3.18
364 365 2.314647 CGCGCTTTCCGAGGTTCAA 61.315 57.895 5.56 0.00 40.02 2.69
365 366 1.206831 GCGCTTTCCGAGGTTCAAC 59.793 57.895 0.00 0.00 40.02 3.18
366 367 1.228657 GCGCTTTCCGAGGTTCAACT 61.229 55.000 0.00 0.00 40.02 3.16
367 368 1.226746 CGCTTTCCGAGGTTCAACTT 58.773 50.000 0.00 0.00 40.02 2.66
368 369 1.602377 CGCTTTCCGAGGTTCAACTTT 59.398 47.619 0.00 0.00 40.02 2.66
369 370 2.602217 CGCTTTCCGAGGTTCAACTTTG 60.602 50.000 0.00 0.00 40.02 2.77
370 371 2.616842 GCTTTCCGAGGTTCAACTTTGA 59.383 45.455 0.00 0.00 34.92 2.69
371 372 3.548214 GCTTTCCGAGGTTCAACTTTGAC 60.548 47.826 0.00 0.00 36.83 3.18
372 373 2.249844 TCCGAGGTTCAACTTTGACC 57.750 50.000 0.00 0.00 36.83 4.02
373 374 1.487142 TCCGAGGTTCAACTTTGACCA 59.513 47.619 11.01 0.00 36.83 4.02
374 375 2.105821 TCCGAGGTTCAACTTTGACCAT 59.894 45.455 11.01 0.00 36.83 3.55
375 376 3.325425 TCCGAGGTTCAACTTTGACCATA 59.675 43.478 11.01 0.00 36.83 2.74
376 377 4.069304 CCGAGGTTCAACTTTGACCATAA 58.931 43.478 11.01 0.00 36.83 1.90
377 378 4.517453 CCGAGGTTCAACTTTGACCATAAA 59.483 41.667 11.01 0.00 36.83 1.40
378 379 5.183140 CCGAGGTTCAACTTTGACCATAAAT 59.817 40.000 11.01 0.00 36.83 1.40
379 380 6.294508 CCGAGGTTCAACTTTGACCATAAATT 60.295 38.462 11.01 0.00 36.83 1.82
380 381 7.145323 CGAGGTTCAACTTTGACCATAAATTT 58.855 34.615 0.00 0.00 36.83 1.82
381 382 8.293867 CGAGGTTCAACTTTGACCATAAATTTA 58.706 33.333 0.00 0.00 36.83 1.40
382 383 9.974980 GAGGTTCAACTTTGACCATAAATTTAA 57.025 29.630 1.21 0.00 36.83 1.52
383 384 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
384 385 8.984764 GGTTCAACTTTGACCATAAATTTAACC 58.015 33.333 1.21 0.00 36.83 2.85
385 386 9.535878 GTTCAACTTTGACCATAAATTTAACCA 57.464 29.630 1.21 0.00 36.83 3.67
387 388 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
388 389 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
389 390 7.149307 ACTTTGACCATAAATTTAACCAACGG 58.851 34.615 1.21 0.00 0.00 4.44
390 391 5.646577 TGACCATAAATTTAACCAACGGG 57.353 39.130 1.21 0.00 41.29 5.28
391 392 5.322754 TGACCATAAATTTAACCAACGGGA 58.677 37.500 1.21 0.00 38.05 5.14
392 393 5.183522 TGACCATAAATTTAACCAACGGGAC 59.816 40.000 1.21 0.00 38.05 4.46
393 394 4.463539 ACCATAAATTTAACCAACGGGACC 59.536 41.667 1.21 0.00 38.05 4.46
394 395 4.463186 CCATAAATTTAACCAACGGGACCA 59.537 41.667 1.21 0.00 38.05 4.02
395 396 5.047235 CCATAAATTTAACCAACGGGACCAA 60.047 40.000 1.21 0.00 38.05 3.67
396 397 4.325028 AAATTTAACCAACGGGACCAAC 57.675 40.909 0.00 0.00 38.05 3.77
397 398 2.732844 TTTAACCAACGGGACCAACT 57.267 45.000 0.00 0.00 38.05 3.16
398 399 1.970092 TTAACCAACGGGACCAACTG 58.030 50.000 0.00 0.00 38.05 3.16
399 400 0.535553 TAACCAACGGGACCAACTGC 60.536 55.000 0.00 0.00 38.05 4.40
400 401 3.353836 CCAACGGGACCAACTGCG 61.354 66.667 0.00 0.00 35.59 5.18
401 402 3.353836 CAACGGGACCAACTGCGG 61.354 66.667 0.00 0.00 0.00 5.69
409 410 4.697756 CCAACTGCGGCGGGAGAA 62.698 66.667 19.55 0.00 35.29 2.87
410 411 2.668212 CAACTGCGGCGGGAGAAA 60.668 61.111 19.55 0.00 35.29 2.52
411 412 2.112297 AACTGCGGCGGGAGAAAA 59.888 55.556 19.55 0.00 35.29 2.29
412 413 1.527380 AACTGCGGCGGGAGAAAAA 60.527 52.632 19.55 0.00 35.29 1.94
467 468 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
468 469 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
469 470 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
470 471 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
471 472 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
472 473 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
473 474 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
474 475 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
475 476 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
476 477 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
477 478 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
478 479 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
494 495 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
495 496 6.287107 CGCAATCGGTCTTGATAGTTAAAT 57.713 37.500 0.00 0.00 0.00 1.40
496 497 6.715464 CGCAATCGGTCTTGATAGTTAAATT 58.285 36.000 0.00 0.00 0.00 1.82
497 498 7.186804 CGCAATCGGTCTTGATAGTTAAATTT 58.813 34.615 0.00 0.00 0.00 1.82
498 499 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
499 500 9.434559 GCAATCGGTCTTGATAGTTAAATTTAC 57.565 33.333 0.00 0.00 0.00 2.01
500 501 9.632969 CAATCGGTCTTGATAGTTAAATTTACG 57.367 33.333 0.00 0.00 0.00 3.18
501 502 7.760131 TCGGTCTTGATAGTTAAATTTACGG 57.240 36.000 0.00 0.00 0.00 4.02
502 503 7.322664 TCGGTCTTGATAGTTAAATTTACGGT 58.677 34.615 0.00 0.00 0.00 4.83
503 504 7.489113 TCGGTCTTGATAGTTAAATTTACGGTC 59.511 37.037 0.00 0.00 0.00 4.79
504 505 7.276218 CGGTCTTGATAGTTAAATTTACGGTCA 59.724 37.037 0.00 0.00 0.00 4.02
505 506 8.938906 GGTCTTGATAGTTAAATTTACGGTCAA 58.061 33.333 0.00 6.02 0.00 3.18
514 515 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
515 516 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
516 517 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
517 518 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
518 519 0.934496 CGGTCAAAGTTGAAGCACGA 59.066 50.000 0.00 0.00 39.21 4.35
519 520 1.070577 CGGTCAAAGTTGAAGCACGAG 60.071 52.381 0.00 0.00 39.21 4.18
520 521 2.210116 GGTCAAAGTTGAAGCACGAGA 58.790 47.619 0.00 0.00 39.21 4.04
521 522 2.612212 GGTCAAAGTTGAAGCACGAGAA 59.388 45.455 0.00 0.00 39.21 2.87
522 523 3.251004 GGTCAAAGTTGAAGCACGAGAAT 59.749 43.478 0.00 0.00 39.21 2.40
523 524 4.451096 GGTCAAAGTTGAAGCACGAGAATA 59.549 41.667 0.00 0.00 39.21 1.75
524 525 5.049680 GGTCAAAGTTGAAGCACGAGAATAA 60.050 40.000 0.00 0.00 39.21 1.40
525 526 6.427150 GTCAAAGTTGAAGCACGAGAATAAA 58.573 36.000 0.00 0.00 39.21 1.40
526 527 6.575201 GTCAAAGTTGAAGCACGAGAATAAAG 59.425 38.462 0.00 0.00 39.21 1.85
527 528 6.481976 TCAAAGTTGAAGCACGAGAATAAAGA 59.518 34.615 0.00 0.00 33.55 2.52
528 529 6.861065 AAGTTGAAGCACGAGAATAAAGAA 57.139 33.333 0.00 0.00 0.00 2.52
529 530 6.861065 AGTTGAAGCACGAGAATAAAGAAA 57.139 33.333 0.00 0.00 0.00 2.52
530 531 6.892691 AGTTGAAGCACGAGAATAAAGAAAG 58.107 36.000 0.00 0.00 0.00 2.62
531 532 6.483640 AGTTGAAGCACGAGAATAAAGAAAGT 59.516 34.615 0.00 0.00 0.00 2.66
532 533 7.656137 AGTTGAAGCACGAGAATAAAGAAAGTA 59.344 33.333 0.00 0.00 0.00 2.24
533 534 7.347508 TGAAGCACGAGAATAAAGAAAGTAC 57.652 36.000 0.00 0.00 0.00 2.73
534 535 7.152645 TGAAGCACGAGAATAAAGAAAGTACT 58.847 34.615 0.00 0.00 0.00 2.73
535 536 8.301720 TGAAGCACGAGAATAAAGAAAGTACTA 58.698 33.333 0.00 0.00 0.00 1.82
536 537 8.463456 AAGCACGAGAATAAAGAAAGTACTAC 57.537 34.615 0.00 0.00 0.00 2.73
537 538 7.600065 AGCACGAGAATAAAGAAAGTACTACA 58.400 34.615 0.00 0.00 0.00 2.74
538 539 8.251721 AGCACGAGAATAAAGAAAGTACTACAT 58.748 33.333 0.00 0.00 0.00 2.29
539 540 8.870879 GCACGAGAATAAAGAAAGTACTACATT 58.129 33.333 0.00 0.00 0.00 2.71
541 542 9.924650 ACGAGAATAAAGAAAGTACTACATTGT 57.075 29.630 0.00 0.00 0.00 2.71
549 550 8.918202 AAGAAAGTACTACATTGTGAAATGGA 57.082 30.769 0.00 0.00 34.56 3.41
550 551 8.918202 AGAAAGTACTACATTGTGAAATGGAA 57.082 30.769 0.00 0.00 34.56 3.53
551 552 9.349713 AGAAAGTACTACATTGTGAAATGGAAA 57.650 29.630 0.00 0.00 34.56 3.13
552 553 9.612620 GAAAGTACTACATTGTGAAATGGAAAG 57.387 33.333 0.00 1.29 34.56 2.62
553 554 8.918202 AAGTACTACATTGTGAAATGGAAAGA 57.082 30.769 0.00 0.00 34.56 2.52
554 555 8.553459 AGTACTACATTGTGAAATGGAAAGAG 57.447 34.615 0.00 0.00 34.56 2.85
555 556 8.157476 AGTACTACATTGTGAAATGGAAAGAGT 58.843 33.333 0.00 0.00 34.56 3.24
556 557 9.431887 GTACTACATTGTGAAATGGAAAGAGTA 57.568 33.333 0.00 0.00 34.56 2.59
558 559 9.520515 ACTACATTGTGAAATGGAAAGAGTATT 57.479 29.630 0.00 0.00 34.56 1.89
593 594 9.821240 ACTCCAGTATAGACATGATAGAATTCT 57.179 33.333 13.56 13.56 0.00 2.40
611 612 3.596940 TCTACATAGAGAGGTCCCACC 57.403 52.381 0.00 0.00 38.99 4.61
613 614 1.019650 ACATAGAGAGGTCCCACCCT 58.980 55.000 0.00 0.00 39.75 4.34
630 631 3.507233 CACCCTATGCATCTGTTGTTGTT 59.493 43.478 0.19 0.00 0.00 2.83
631 632 3.507233 ACCCTATGCATCTGTTGTTGTTG 59.493 43.478 0.19 0.00 0.00 3.33
632 633 3.507233 CCCTATGCATCTGTTGTTGTTGT 59.493 43.478 0.19 0.00 0.00 3.32
662 663 0.108329 CCGTATCAGTTTCGCACCCT 60.108 55.000 0.00 0.00 0.00 4.34
698 699 2.604914 GCACATGTGAGTTACTCCATCG 59.395 50.000 29.80 9.59 0.00 3.84
716 717 1.347707 TCGTTCTCAGCTTTCACCCAT 59.652 47.619 0.00 0.00 0.00 4.00
718 719 1.734465 GTTCTCAGCTTTCACCCATCG 59.266 52.381 0.00 0.00 0.00 3.84
719 720 0.976641 TCTCAGCTTTCACCCATCGT 59.023 50.000 0.00 0.00 0.00 3.73
722 723 3.958147 TCTCAGCTTTCACCCATCGTATA 59.042 43.478 0.00 0.00 0.00 1.47
724 725 3.069586 TCAGCTTTCACCCATCGTATAGG 59.930 47.826 0.00 0.00 0.00 2.57
728 729 4.621991 CTTTCACCCATCGTATAGGACAG 58.378 47.826 0.00 0.00 0.00 3.51
730 731 3.487372 TCACCCATCGTATAGGACAGAG 58.513 50.000 0.00 0.00 0.00 3.35
731 732 2.558795 CACCCATCGTATAGGACAGAGG 59.441 54.545 0.00 0.00 0.00 3.69
733 734 2.225041 CCCATCGTATAGGACAGAGGGA 60.225 54.545 14.33 0.00 35.75 4.20
734 735 3.085533 CCATCGTATAGGACAGAGGGAG 58.914 54.545 0.00 0.00 35.75 4.30
735 736 2.273538 TCGTATAGGACAGAGGGAGC 57.726 55.000 0.00 0.00 0.00 4.70
736 737 1.493446 TCGTATAGGACAGAGGGAGCA 59.507 52.381 0.00 0.00 0.00 4.26
745 1162 3.117963 GGACAGAGGGAGCAGTAGTAGTA 60.118 52.174 0.00 0.00 0.00 1.82
749 1166 3.955551 AGAGGGAGCAGTAGTAGTAAAGC 59.044 47.826 0.00 0.00 0.00 3.51
777 1195 1.068055 TCGTCGTTCAGCTAGGGAAAC 60.068 52.381 0.00 0.00 0.00 2.78
822 1241 8.691661 AAAAAGTACAGGTGTTGATGTATTCT 57.308 30.769 0.00 0.00 34.60 2.40
823 1242 9.787435 AAAAAGTACAGGTGTTGATGTATTCTA 57.213 29.630 0.00 0.00 34.60 2.10
824 1243 8.773404 AAAGTACAGGTGTTGATGTATTCTAC 57.227 34.615 0.00 0.00 34.60 2.59
825 1244 7.719871 AGTACAGGTGTTGATGTATTCTACT 57.280 36.000 0.00 0.00 34.60 2.57
826 1245 7.773149 AGTACAGGTGTTGATGTATTCTACTC 58.227 38.462 0.00 0.00 34.60 2.59
827 1246 5.978814 ACAGGTGTTGATGTATTCTACTCC 58.021 41.667 0.00 0.00 41.28 3.85
829 1248 6.213600 ACAGGTGTTGATGTATTCTACTCCTT 59.786 38.462 7.68 0.65 45.57 3.36
830 1249 6.758886 CAGGTGTTGATGTATTCTACTCCTTC 59.241 42.308 7.68 0.00 45.57 3.46
831 1250 6.049790 GGTGTTGATGTATTCTACTCCTTCC 58.950 44.000 0.00 0.00 39.29 3.46
832 1251 5.749109 GTGTTGATGTATTCTACTCCTTCCG 59.251 44.000 0.00 0.00 32.15 4.30
833 1252 5.421056 TGTTGATGTATTCTACTCCTTCCGT 59.579 40.000 0.00 0.00 32.15 4.69
834 1253 6.070995 TGTTGATGTATTCTACTCCTTCCGTT 60.071 38.462 0.00 0.00 32.15 4.44
835 1254 6.540438 TGATGTATTCTACTCCTTCCGTTT 57.460 37.500 0.00 0.00 0.00 3.60
836 1255 6.942976 TGATGTATTCTACTCCTTCCGTTTT 58.057 36.000 0.00 0.00 0.00 2.43
837 1256 7.391620 TGATGTATTCTACTCCTTCCGTTTTT 58.608 34.615 0.00 0.00 0.00 1.94
838 1257 8.533657 TGATGTATTCTACTCCTTCCGTTTTTA 58.466 33.333 0.00 0.00 0.00 1.52
839 1258 9.374838 GATGTATTCTACTCCTTCCGTTTTTAA 57.625 33.333 0.00 0.00 0.00 1.52
840 1259 9.729281 ATGTATTCTACTCCTTCCGTTTTTAAA 57.271 29.630 0.00 0.00 0.00 1.52
841 1260 9.729281 TGTATTCTACTCCTTCCGTTTTTAAAT 57.271 29.630 0.00 0.00 0.00 1.40
849 1268 9.955102 ACTCCTTCCGTTTTTAAATATAAGTCT 57.045 29.630 0.00 0.00 0.00 3.24
870 1289 9.574516 AAGTCTCTGTAAAGATTTTATTGTGGT 57.425 29.630 0.00 0.00 0.00 4.16
871 1290 9.220767 AGTCTCTGTAAAGATTTTATTGTGGTC 57.779 33.333 0.00 0.00 0.00 4.02
872 1291 8.169268 GTCTCTGTAAAGATTTTATTGTGGTCG 58.831 37.037 0.00 0.00 0.00 4.79
873 1292 7.876068 TCTCTGTAAAGATTTTATTGTGGTCGT 59.124 33.333 0.00 0.00 0.00 4.34
874 1293 9.146984 CTCTGTAAAGATTTTATTGTGGTCGTA 57.853 33.333 0.00 0.00 0.00 3.43
875 1294 9.661563 TCTGTAAAGATTTTATTGTGGTCGTAT 57.338 29.630 0.00 0.00 0.00 3.06
876 1295 9.702726 CTGTAAAGATTTTATTGTGGTCGTATG 57.297 33.333 0.00 0.00 0.00 2.39
877 1296 9.221933 TGTAAAGATTTTATTGTGGTCGTATGT 57.778 29.630 0.00 0.00 0.00 2.29
880 1299 9.444600 AAAGATTTTATTGTGGTCGTATGTAGT 57.555 29.630 0.00 0.00 0.00 2.73
881 1300 9.444600 AAGATTTTATTGTGGTCGTATGTAGTT 57.555 29.630 0.00 0.00 0.00 2.24
882 1301 9.095065 AGATTTTATTGTGGTCGTATGTAGTTC 57.905 33.333 0.00 0.00 0.00 3.01
883 1302 8.780846 ATTTTATTGTGGTCGTATGTAGTTCA 57.219 30.769 0.00 0.00 0.00 3.18
884 1303 8.780846 TTTTATTGTGGTCGTATGTAGTTCAT 57.219 30.769 0.00 0.00 40.25 2.57
885 1304 9.872721 TTTTATTGTGGTCGTATGTAGTTCATA 57.127 29.630 0.00 0.00 37.91 2.15
886 1305 9.524106 TTTATTGTGGTCGTATGTAGTTCATAG 57.476 33.333 0.00 0.00 39.36 2.23
887 1306 6.519679 TTGTGGTCGTATGTAGTTCATAGT 57.480 37.500 0.00 0.00 39.36 2.12
888 1307 5.886992 TGTGGTCGTATGTAGTTCATAGTG 58.113 41.667 0.00 0.00 39.36 2.74
889 1308 5.648960 TGTGGTCGTATGTAGTTCATAGTGA 59.351 40.000 0.00 0.00 39.36 3.41
890 1309 6.151480 TGTGGTCGTATGTAGTTCATAGTGAA 59.849 38.462 0.00 0.00 39.36 3.18
891 1310 7.031372 GTGGTCGTATGTAGTTCATAGTGAAA 58.969 38.462 0.00 0.00 38.22 2.69
892 1311 7.705325 GTGGTCGTATGTAGTTCATAGTGAAAT 59.295 37.037 0.00 0.00 38.22 2.17
893 1312 7.919091 TGGTCGTATGTAGTTCATAGTGAAATC 59.081 37.037 0.00 0.00 38.22 2.17
894 1313 8.136165 GGTCGTATGTAGTTCATAGTGAAATCT 58.864 37.037 0.00 0.00 38.22 2.40
895 1314 9.517609 GTCGTATGTAGTTCATAGTGAAATCTT 57.482 33.333 0.00 0.00 38.22 2.40
921 1340 4.442401 AAAAACTTTAGGAACGGAGGGA 57.558 40.909 0.00 0.00 0.00 4.20
922 1341 3.697619 AAACTTTAGGAACGGAGGGAG 57.302 47.619 0.00 0.00 0.00 4.30
923 1342 2.322339 ACTTTAGGAACGGAGGGAGT 57.678 50.000 0.00 0.00 0.00 3.85
924 1343 3.463048 ACTTTAGGAACGGAGGGAGTA 57.537 47.619 0.00 0.00 0.00 2.59
925 1344 3.363627 ACTTTAGGAACGGAGGGAGTAG 58.636 50.000 0.00 0.00 0.00 2.57
1040 1470 3.458118 TCAAACAAGGTGGAGGAGAAGAA 59.542 43.478 0.00 0.00 0.00 2.52
1056 1486 2.609610 AAAGGGAGGGGCGCACTA 60.610 61.111 10.74 0.00 0.00 2.74
1144 1574 1.332889 TGATCTCGTCCAGCCTGCAT 61.333 55.000 0.00 0.00 0.00 3.96
1168 1598 1.073897 GCACCCTTCCTTGCAGAGT 59.926 57.895 0.00 0.00 38.68 3.24
1171 1601 2.310538 CACCCTTCCTTGCAGAGTTTT 58.689 47.619 0.00 0.00 0.00 2.43
1224 1663 1.135916 CGAAGACTCGTTTCTCTCGCT 60.136 52.381 0.00 0.00 40.33 4.93
1236 1675 2.513666 CTCGCTGGCGGCCATTAA 60.514 61.111 24.10 9.57 40.25 1.40
1239 1678 1.522806 CGCTGGCGGCCATTAACTA 60.523 57.895 24.10 0.00 37.74 2.24
1240 1679 1.498865 CGCTGGCGGCCATTAACTAG 61.499 60.000 24.10 10.07 37.74 2.57
1334 1773 2.396747 AAAACGAAAGGCGCCCGTTC 62.397 55.000 32.22 28.22 44.41 3.95
1389 1835 1.133790 CAAGGTAGGCGTTAGCGTAGT 59.866 52.381 0.00 0.00 43.33 2.73
1421 1873 4.177026 CTGCTTTTAGTGCGAGTGTAGAT 58.823 43.478 0.00 0.00 0.00 1.98
1455 1907 1.400494 GTGGACTGTGGTGTGTTGTTC 59.600 52.381 0.00 0.00 0.00 3.18
1458 1910 2.158871 GGACTGTGGTGTGTTGTTCCTA 60.159 50.000 0.00 0.00 0.00 2.94
1461 1913 1.841277 TGTGGTGTGTTGTTCCTACCT 59.159 47.619 0.00 0.00 32.68 3.08
1478 1930 3.245346 TGGTGCGTGGGATGGACA 61.245 61.111 0.00 0.00 0.00 4.02
1499 1951 0.956633 GAGGGTTTGGTCCGGAAAAC 59.043 55.000 19.31 19.31 35.89 2.43
1508 1960 6.747125 GTTTGGTCCGGAAAACCTATAAAAA 58.253 36.000 17.48 5.19 37.69 1.94
1530 1982 0.904865 TCTCCAGCCGTGTCTCCAAT 60.905 55.000 0.00 0.00 0.00 3.16
1532 1984 1.207089 CTCCAGCCGTGTCTCCAATAA 59.793 52.381 0.00 0.00 0.00 1.40
1540 1992 4.003648 CCGTGTCTCCAATAAGCTTTCTT 58.996 43.478 3.20 0.00 36.35 2.52
1544 1997 6.174049 GTGTCTCCAATAAGCTTTCTTAGGT 58.826 40.000 3.20 0.00 38.11 3.08
1756 2218 0.396417 CTGACTCGTCTCCCATCCCT 60.396 60.000 0.00 0.00 0.00 4.20
1824 2286 6.116126 GCCTTTCACCACTAGATAGTCATTT 58.884 40.000 0.00 0.00 33.46 2.32
1919 2381 1.153706 AGTTTAGCGGCGCGTACAT 60.154 52.632 27.59 11.39 0.00 2.29
2135 2598 1.028905 CGGGTGAAAGCAAAGAACCA 58.971 50.000 0.00 0.00 34.77 3.67
2143 2606 0.877071 AGCAAAGAACCAGCATCGTG 59.123 50.000 0.00 0.00 0.00 4.35
2198 2661 1.215382 CCGATGCTCCACTTCACGA 59.785 57.895 0.00 0.00 0.00 4.35
2213 2676 4.569162 ACTTCACGACGAGAAAACATTTCA 59.431 37.500 9.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.017946 ACTTAATCGCAAAGAAGATTTGAACTC 58.982 33.333 4.59 0.00 38.04 3.01
3 4 8.420189 CAACTTAATCGCAAAGAAGATTTGAAC 58.580 33.333 4.59 0.00 38.04 3.18
5 6 7.648142 ACAACTTAATCGCAAAGAAGATTTGA 58.352 30.769 4.59 0.00 38.04 2.69
7 8 9.774742 GATACAACTTAATCGCAAAGAAGATTT 57.225 29.630 0.00 0.00 38.04 2.17
9 10 7.920738 GGATACAACTTAATCGCAAAGAAGAT 58.079 34.615 0.00 0.00 0.00 2.40
10 11 7.303634 GGATACAACTTAATCGCAAAGAAGA 57.696 36.000 0.00 0.00 0.00 2.87
29 30 5.240844 GCCCCTTAATAACACACATGGATAC 59.759 44.000 0.00 0.00 0.00 2.24
30 31 5.133660 AGCCCCTTAATAACACACATGGATA 59.866 40.000 0.00 0.00 0.00 2.59
31 32 4.079212 AGCCCCTTAATAACACACATGGAT 60.079 41.667 0.00 0.00 0.00 3.41
32 33 3.268334 AGCCCCTTAATAACACACATGGA 59.732 43.478 0.00 0.00 0.00 3.41
33 34 3.631250 AGCCCCTTAATAACACACATGG 58.369 45.455 0.00 0.00 0.00 3.66
34 35 5.296780 CAGTAGCCCCTTAATAACACACATG 59.703 44.000 0.00 0.00 0.00 3.21
35 36 5.437060 CAGTAGCCCCTTAATAACACACAT 58.563 41.667 0.00 0.00 0.00 3.21
36 37 4.839121 CAGTAGCCCCTTAATAACACACA 58.161 43.478 0.00 0.00 0.00 3.72
37 38 3.626217 GCAGTAGCCCCTTAATAACACAC 59.374 47.826 0.00 0.00 33.58 3.82
38 39 3.521937 AGCAGTAGCCCCTTAATAACACA 59.478 43.478 0.00 0.00 43.56 3.72
39 40 4.152284 AGCAGTAGCCCCTTAATAACAC 57.848 45.455 0.00 0.00 43.56 3.32
40 41 4.855298 AAGCAGTAGCCCCTTAATAACA 57.145 40.909 0.00 0.00 43.56 2.41
41 42 7.818997 AATTAAGCAGTAGCCCCTTAATAAC 57.181 36.000 5.58 0.00 39.53 1.89
42 43 9.924010 TTTAATTAAGCAGTAGCCCCTTAATAA 57.076 29.630 0.00 0.00 39.53 1.40
45 46 9.346005 GTATTTAATTAAGCAGTAGCCCCTTAA 57.654 33.333 0.00 0.00 43.56 1.85
46 47 8.496088 TGTATTTAATTAAGCAGTAGCCCCTTA 58.504 33.333 0.00 0.00 43.56 2.69
47 48 7.351166 TGTATTTAATTAAGCAGTAGCCCCTT 58.649 34.615 0.00 0.00 43.56 3.95
48 49 6.906848 TGTATTTAATTAAGCAGTAGCCCCT 58.093 36.000 0.00 0.00 43.56 4.79
49 50 7.576861 TTGTATTTAATTAAGCAGTAGCCCC 57.423 36.000 0.00 0.00 43.56 5.80
50 51 9.297586 GTTTTGTATTTAATTAAGCAGTAGCCC 57.702 33.333 0.00 0.00 43.56 5.19
51 52 9.849166 TGTTTTGTATTTAATTAAGCAGTAGCC 57.151 29.630 0.00 0.00 43.56 3.93
55 56 9.705290 CCCTTGTTTTGTATTTAATTAAGCAGT 57.295 29.630 0.00 0.00 0.00 4.40
56 57 9.150348 CCCCTTGTTTTGTATTTAATTAAGCAG 57.850 33.333 0.00 0.00 0.00 4.24
57 58 8.652290 ACCCCTTGTTTTGTATTTAATTAAGCA 58.348 29.630 0.00 0.00 0.00 3.91
58 59 8.931775 CACCCCTTGTTTTGTATTTAATTAAGC 58.068 33.333 0.00 0.00 0.00 3.09
59 60 9.990360 ACACCCCTTGTTTTGTATTTAATTAAG 57.010 29.630 0.00 0.00 33.09 1.85
75 76 9.516546 TTTTTATTTTACAAAAACACCCCTTGT 57.483 25.926 0.00 0.00 41.74 3.16
83 84 9.517361 CGCGCATATTTTTATTTTACAAAAACA 57.483 25.926 8.75 0.00 37.60 2.83
84 85 8.501276 GCGCGCATATTTTTATTTTACAAAAAC 58.499 29.630 29.10 0.00 37.60 2.43
85 86 7.688578 GGCGCGCATATTTTTATTTTACAAAAA 59.311 29.630 34.42 0.00 38.74 1.94
86 87 7.063544 AGGCGCGCATATTTTTATTTTACAAAA 59.936 29.630 34.42 0.00 0.00 2.44
87 88 6.531948 AGGCGCGCATATTTTTATTTTACAAA 59.468 30.769 34.42 0.00 0.00 2.83
88 89 6.037098 AGGCGCGCATATTTTTATTTTACAA 58.963 32.000 34.42 0.00 0.00 2.41
89 90 5.583495 AGGCGCGCATATTTTTATTTTACA 58.417 33.333 34.42 0.00 0.00 2.41
90 91 5.164320 CGAGGCGCGCATATTTTTATTTTAC 60.164 40.000 34.42 9.19 0.00 2.01
91 92 4.907010 CGAGGCGCGCATATTTTTATTTTA 59.093 37.500 34.42 0.00 0.00 1.52
92 93 3.728718 CGAGGCGCGCATATTTTTATTTT 59.271 39.130 34.42 0.80 0.00 1.82
93 94 3.242936 ACGAGGCGCGCATATTTTTATTT 60.243 39.130 34.42 2.35 46.04 1.40
94 95 2.289547 ACGAGGCGCGCATATTTTTATT 59.710 40.909 34.42 4.04 46.04 1.40
95 96 1.871039 ACGAGGCGCGCATATTTTTAT 59.129 42.857 34.42 6.07 46.04 1.40
96 97 1.292061 ACGAGGCGCGCATATTTTTA 58.708 45.000 34.42 0.00 46.04 1.52
97 98 0.450184 AACGAGGCGCGCATATTTTT 59.550 45.000 34.42 13.85 46.04 1.94
98 99 0.027586 GAACGAGGCGCGCATATTTT 59.972 50.000 34.42 19.13 46.04 1.82
99 100 1.087202 TGAACGAGGCGCGCATATTT 61.087 50.000 34.42 21.86 46.04 1.40
100 101 1.087202 TTGAACGAGGCGCGCATATT 61.087 50.000 34.42 23.40 46.04 1.28
101 102 1.490693 CTTGAACGAGGCGCGCATAT 61.491 55.000 34.42 18.49 46.04 1.78
102 103 2.125872 TTGAACGAGGCGCGCATA 60.126 55.556 34.42 7.37 46.04 3.14
103 104 3.490759 CTTGAACGAGGCGCGCAT 61.491 61.111 34.42 29.11 46.04 4.73
107 108 2.500183 GAACAGCTTGAACGAGGCGC 62.500 60.000 0.00 0.00 0.00 6.53
108 109 1.493311 GAACAGCTTGAACGAGGCG 59.507 57.895 0.00 0.00 0.00 5.52
109 110 1.578206 GGGAACAGCTTGAACGAGGC 61.578 60.000 0.00 0.00 0.00 4.70
110 111 0.955919 GGGGAACAGCTTGAACGAGG 60.956 60.000 0.00 0.00 0.00 4.63
111 112 0.250295 TGGGGAACAGCTTGAACGAG 60.250 55.000 0.00 0.00 0.00 4.18
112 113 0.400213 ATGGGGAACAGCTTGAACGA 59.600 50.000 0.00 0.00 0.00 3.85
113 114 0.804989 GATGGGGAACAGCTTGAACG 59.195 55.000 0.00 0.00 31.33 3.95
114 115 1.909700 TGATGGGGAACAGCTTGAAC 58.090 50.000 0.00 0.00 36.18 3.18
115 116 2.827322 CAATGATGGGGAACAGCTTGAA 59.173 45.455 0.00 0.00 36.18 2.69
116 117 2.041485 TCAATGATGGGGAACAGCTTGA 59.959 45.455 0.00 0.00 36.18 3.02
117 118 2.165030 GTCAATGATGGGGAACAGCTTG 59.835 50.000 0.00 0.00 36.18 4.01
118 119 2.225091 TGTCAATGATGGGGAACAGCTT 60.225 45.455 0.00 0.00 36.18 3.74
119 120 1.355381 TGTCAATGATGGGGAACAGCT 59.645 47.619 0.00 0.00 36.18 4.24
120 121 1.838112 TGTCAATGATGGGGAACAGC 58.162 50.000 0.00 0.00 35.62 4.40
121 122 3.131577 CCATTGTCAATGATGGGGAACAG 59.868 47.826 24.31 2.54 41.46 3.16
122 123 3.098377 CCATTGTCAATGATGGGGAACA 58.902 45.455 24.31 0.00 41.46 3.18
123 124 3.806625 CCATTGTCAATGATGGGGAAC 57.193 47.619 24.31 0.00 41.46 3.62
128 129 3.305813 GCTATGCCCATTGTCAATGATGG 60.306 47.826 24.31 18.50 41.46 3.51
129 130 3.305813 GGCTATGCCCATTGTCAATGATG 60.306 47.826 24.31 16.13 44.06 3.07
130 131 2.895404 GGCTATGCCCATTGTCAATGAT 59.105 45.455 24.31 13.56 44.06 2.45
131 132 2.309613 GGCTATGCCCATTGTCAATGA 58.690 47.619 24.31 7.42 44.06 2.57
132 133 2.806608 GGCTATGCCCATTGTCAATG 57.193 50.000 17.24 17.24 44.06 2.82
144 145 1.645455 CATGTCAGCGTGGCTATGC 59.355 57.895 6.08 6.08 36.40 3.14
145 146 1.645455 GCATGTCAGCGTGGCTATG 59.355 57.895 0.00 0.00 36.40 2.23
146 147 4.131376 GCATGTCAGCGTGGCTAT 57.869 55.556 0.00 0.00 36.40 2.97
150 151 1.985447 GATGTGGCATGTCAGCGTGG 61.985 60.000 0.00 0.00 34.64 4.94
151 152 1.300266 TGATGTGGCATGTCAGCGTG 61.300 55.000 0.00 0.00 34.64 5.34
152 153 1.003476 TGATGTGGCATGTCAGCGT 60.003 52.632 0.00 0.00 34.64 5.07
153 154 1.719709 CTGATGTGGCATGTCAGCG 59.280 57.895 15.89 0.00 33.72 5.18
155 156 1.719709 CGCTGATGTGGCATGTCAG 59.280 57.895 20.98 20.98 41.69 3.51
156 157 2.400962 GCGCTGATGTGGCATGTCA 61.401 57.895 0.00 0.00 0.00 3.58
157 158 2.319011 CTGCGCTGATGTGGCATGTC 62.319 60.000 9.73 0.00 35.91 3.06
158 159 2.360225 TGCGCTGATGTGGCATGT 60.360 55.556 9.73 0.00 0.00 3.21
159 160 2.407616 CTGCGCTGATGTGGCATG 59.592 61.111 9.73 0.00 35.91 4.06
160 161 2.619941 ATCCTGCGCTGATGTGGCAT 62.620 55.000 16.65 0.00 35.91 4.40
161 162 1.970352 TATCCTGCGCTGATGTGGCA 61.970 55.000 16.65 0.00 35.07 4.92
162 163 1.227645 TATCCTGCGCTGATGTGGC 60.228 57.895 16.65 0.00 0.00 5.01
163 164 1.217585 CGTATCCTGCGCTGATGTGG 61.218 60.000 16.65 4.95 0.00 4.17
164 165 0.528466 ACGTATCCTGCGCTGATGTG 60.528 55.000 16.65 12.50 0.00 3.21
165 166 0.249073 GACGTATCCTGCGCTGATGT 60.249 55.000 16.65 7.42 0.00 3.06
166 167 0.031314 AGACGTATCCTGCGCTGATG 59.969 55.000 16.65 4.06 0.00 3.07
167 168 0.031314 CAGACGTATCCTGCGCTGAT 59.969 55.000 16.65 15.99 36.42 2.90
168 169 1.029947 TCAGACGTATCCTGCGCTGA 61.030 55.000 16.65 9.34 38.80 4.26
169 170 0.179137 TTCAGACGTATCCTGCGCTG 60.179 55.000 9.73 8.47 36.02 5.18
170 171 0.747255 ATTCAGACGTATCCTGCGCT 59.253 50.000 9.73 0.00 0.00 5.92
171 172 2.052157 GTATTCAGACGTATCCTGCGC 58.948 52.381 0.00 0.00 0.00 6.09
172 173 3.349488 TGTATTCAGACGTATCCTGCG 57.651 47.619 0.00 0.00 0.00 5.18
173 174 3.491267 GCTTGTATTCAGACGTATCCTGC 59.509 47.826 0.00 0.00 0.00 4.85
174 175 4.682787 TGCTTGTATTCAGACGTATCCTG 58.317 43.478 0.00 0.00 0.00 3.86
175 176 5.339008 TTGCTTGTATTCAGACGTATCCT 57.661 39.130 0.00 0.00 0.00 3.24
176 177 5.581085 ACTTTGCTTGTATTCAGACGTATCC 59.419 40.000 0.00 0.00 0.00 2.59
177 178 6.310467 TCACTTTGCTTGTATTCAGACGTATC 59.690 38.462 0.00 0.00 0.00 2.24
178 179 6.090898 GTCACTTTGCTTGTATTCAGACGTAT 59.909 38.462 0.00 0.00 0.00 3.06
179 180 5.404366 GTCACTTTGCTTGTATTCAGACGTA 59.596 40.000 0.00 0.00 0.00 3.57
180 181 4.211374 GTCACTTTGCTTGTATTCAGACGT 59.789 41.667 0.00 0.00 0.00 4.34
181 182 4.377431 GGTCACTTTGCTTGTATTCAGACG 60.377 45.833 0.00 0.00 0.00 4.18
182 183 4.377431 CGGTCACTTTGCTTGTATTCAGAC 60.377 45.833 0.00 0.00 0.00 3.51
183 184 3.745975 CGGTCACTTTGCTTGTATTCAGA 59.254 43.478 0.00 0.00 0.00 3.27
184 185 3.498397 ACGGTCACTTTGCTTGTATTCAG 59.502 43.478 0.00 0.00 0.00 3.02
185 186 3.472652 ACGGTCACTTTGCTTGTATTCA 58.527 40.909 0.00 0.00 0.00 2.57
186 187 5.796350 ATACGGTCACTTTGCTTGTATTC 57.204 39.130 0.00 0.00 0.00 1.75
187 188 6.378582 CAAATACGGTCACTTTGCTTGTATT 58.621 36.000 0.00 0.00 33.74 1.89
188 189 5.619086 GCAAATACGGTCACTTTGCTTGTAT 60.619 40.000 19.81 0.00 46.94 2.29
189 190 4.319911 GCAAATACGGTCACTTTGCTTGTA 60.320 41.667 19.81 0.00 46.94 2.41
190 191 3.550030 GCAAATACGGTCACTTTGCTTGT 60.550 43.478 19.81 0.00 46.94 3.16
191 192 2.979813 GCAAATACGGTCACTTTGCTTG 59.020 45.455 19.81 2.99 46.94 4.01
192 193 3.282831 GCAAATACGGTCACTTTGCTT 57.717 42.857 19.81 0.00 46.94 3.91
193 194 2.989422 GCAAATACGGTCACTTTGCT 57.011 45.000 19.81 0.00 46.94 3.91
195 196 5.123186 TCCTTATGCAAATACGGTCACTTTG 59.877 40.000 0.00 6.45 33.93 2.77
196 197 5.250200 TCCTTATGCAAATACGGTCACTTT 58.750 37.500 0.00 0.00 0.00 2.66
197 198 4.839121 TCCTTATGCAAATACGGTCACTT 58.161 39.130 0.00 0.00 0.00 3.16
198 199 4.481368 TCCTTATGCAAATACGGTCACT 57.519 40.909 0.00 0.00 0.00 3.41
199 200 5.095691 CATCCTTATGCAAATACGGTCAC 57.904 43.478 0.00 0.00 0.00 3.67
212 213 6.057533 TGGTCATCTAACTTGCATCCTTATG 58.942 40.000 0.00 0.00 36.09 1.90
213 214 6.252599 TGGTCATCTAACTTGCATCCTTAT 57.747 37.500 0.00 0.00 0.00 1.73
214 215 5.692115 TGGTCATCTAACTTGCATCCTTA 57.308 39.130 0.00 0.00 0.00 2.69
215 216 4.574674 TGGTCATCTAACTTGCATCCTT 57.425 40.909 0.00 0.00 0.00 3.36
216 217 4.785346 ATGGTCATCTAACTTGCATCCT 57.215 40.909 0.00 0.00 0.00 3.24
217 218 6.942532 TTTATGGTCATCTAACTTGCATCC 57.057 37.500 0.00 0.00 0.00 3.51
218 219 9.241317 CAAATTTATGGTCATCTAACTTGCATC 57.759 33.333 0.00 0.00 0.00 3.91
219 220 8.752187 ACAAATTTATGGTCATCTAACTTGCAT 58.248 29.630 0.00 0.00 0.00 3.96
220 221 8.121305 ACAAATTTATGGTCATCTAACTTGCA 57.879 30.769 0.00 0.00 0.00 4.08
255 256 8.720562 GCTCAATGTTTAATTTGGTGCTAAAAT 58.279 29.630 0.00 0.00 0.00 1.82
256 257 7.095857 CGCTCAATGTTTAATTTGGTGCTAAAA 60.096 33.333 0.00 0.00 0.00 1.52
257 258 6.364706 CGCTCAATGTTTAATTTGGTGCTAAA 59.635 34.615 0.00 0.00 0.00 1.85
258 259 5.861251 CGCTCAATGTTTAATTTGGTGCTAA 59.139 36.000 0.00 0.00 0.00 3.09
259 260 5.048364 ACGCTCAATGTTTAATTTGGTGCTA 60.048 36.000 0.00 0.00 0.00 3.49
260 261 4.236935 CGCTCAATGTTTAATTTGGTGCT 58.763 39.130 0.00 0.00 0.00 4.40
261 262 3.987220 ACGCTCAATGTTTAATTTGGTGC 59.013 39.130 0.00 0.00 0.00 5.01
262 263 6.861055 ACTTACGCTCAATGTTTAATTTGGTG 59.139 34.615 0.00 0.00 0.00 4.17
263 264 6.977213 ACTTACGCTCAATGTTTAATTTGGT 58.023 32.000 0.00 0.00 0.00 3.67
264 265 7.381139 ACAACTTACGCTCAATGTTTAATTTGG 59.619 33.333 0.00 0.00 0.00 3.28
265 266 8.280909 ACAACTTACGCTCAATGTTTAATTTG 57.719 30.769 0.00 0.00 0.00 2.32
267 268 9.554724 CATACAACTTACGCTCAATGTTTAATT 57.445 29.630 0.00 0.00 0.00 1.40
268 269 8.941977 TCATACAACTTACGCTCAATGTTTAAT 58.058 29.630 0.00 0.00 0.00 1.40
269 270 8.225107 GTCATACAACTTACGCTCAATGTTTAA 58.775 33.333 0.00 0.00 0.00 1.52
270 271 7.601130 AGTCATACAACTTACGCTCAATGTTTA 59.399 33.333 0.00 0.00 0.00 2.01
271 272 6.426937 AGTCATACAACTTACGCTCAATGTTT 59.573 34.615 0.00 0.00 0.00 2.83
272 273 5.932303 AGTCATACAACTTACGCTCAATGTT 59.068 36.000 0.00 0.00 0.00 2.71
273 274 5.348724 CAGTCATACAACTTACGCTCAATGT 59.651 40.000 0.00 0.00 0.00 2.71
274 275 5.725042 GCAGTCATACAACTTACGCTCAATG 60.725 44.000 0.00 0.00 0.00 2.82
275 276 4.330074 GCAGTCATACAACTTACGCTCAAT 59.670 41.667 0.00 0.00 0.00 2.57
276 277 3.678072 GCAGTCATACAACTTACGCTCAA 59.322 43.478 0.00 0.00 0.00 3.02
277 278 3.250744 GCAGTCATACAACTTACGCTCA 58.749 45.455 0.00 0.00 0.00 4.26
278 279 3.250744 TGCAGTCATACAACTTACGCTC 58.749 45.455 0.00 0.00 0.00 5.03
279 280 3.313012 TGCAGTCATACAACTTACGCT 57.687 42.857 0.00 0.00 0.00 5.07
280 281 3.370978 ACATGCAGTCATACAACTTACGC 59.629 43.478 0.00 0.00 0.00 4.42
281 282 4.625311 TCACATGCAGTCATACAACTTACG 59.375 41.667 0.00 0.00 0.00 3.18
282 283 6.668541 ATCACATGCAGTCATACAACTTAC 57.331 37.500 0.00 0.00 0.00 2.34
283 284 8.962884 AATATCACATGCAGTCATACAACTTA 57.037 30.769 0.00 0.00 0.00 2.24
284 285 7.870509 AATATCACATGCAGTCATACAACTT 57.129 32.000 0.00 0.00 0.00 2.66
285 286 9.212641 GATAATATCACATGCAGTCATACAACT 57.787 33.333 0.00 0.00 0.00 3.16
286 287 9.212641 AGATAATATCACATGCAGTCATACAAC 57.787 33.333 2.84 0.00 0.00 3.32
287 288 9.428097 GAGATAATATCACATGCAGTCATACAA 57.572 33.333 2.84 0.00 0.00 2.41
288 289 8.587608 TGAGATAATATCACATGCAGTCATACA 58.412 33.333 2.84 0.00 0.00 2.29
289 290 8.992835 TGAGATAATATCACATGCAGTCATAC 57.007 34.615 2.84 0.00 0.00 2.39
292 293 9.428097 GTATTGAGATAATATCACATGCAGTCA 57.572 33.333 2.84 0.00 30.14 3.41
293 294 9.650539 AGTATTGAGATAATATCACATGCAGTC 57.349 33.333 2.84 0.00 30.14 3.51
294 295 9.650539 GAGTATTGAGATAATATCACATGCAGT 57.349 33.333 2.84 0.00 30.14 4.40
295 296 9.096160 GGAGTATTGAGATAATATCACATGCAG 57.904 37.037 2.84 0.00 30.14 4.41
296 297 8.043113 GGGAGTATTGAGATAATATCACATGCA 58.957 37.037 2.84 0.00 30.14 3.96
297 298 8.263640 AGGGAGTATTGAGATAATATCACATGC 58.736 37.037 2.84 0.00 30.14 4.06
298 299 9.814899 GAGGGAGTATTGAGATAATATCACATG 57.185 37.037 2.84 0.00 30.14 3.21
299 300 8.986991 GGAGGGAGTATTGAGATAATATCACAT 58.013 37.037 2.84 0.00 30.14 3.21
300 301 7.955750 TGGAGGGAGTATTGAGATAATATCACA 59.044 37.037 2.84 0.00 0.00 3.58
301 302 8.367660 TGGAGGGAGTATTGAGATAATATCAC 57.632 38.462 2.84 0.00 0.00 3.06
302 303 9.566331 AATGGAGGGAGTATTGAGATAATATCA 57.434 33.333 2.84 0.00 0.00 2.15
304 305 8.700051 CGAATGGAGGGAGTATTGAGATAATAT 58.300 37.037 0.00 0.00 0.00 1.28
305 306 7.893833 TCGAATGGAGGGAGTATTGAGATAATA 59.106 37.037 0.00 0.00 0.00 0.98
306 307 6.726299 TCGAATGGAGGGAGTATTGAGATAAT 59.274 38.462 0.00 0.00 0.00 1.28
307 308 6.075315 TCGAATGGAGGGAGTATTGAGATAA 58.925 40.000 0.00 0.00 0.00 1.75
308 309 5.641155 TCGAATGGAGGGAGTATTGAGATA 58.359 41.667 0.00 0.00 0.00 1.98
309 310 4.483950 TCGAATGGAGGGAGTATTGAGAT 58.516 43.478 0.00 0.00 0.00 2.75
310 311 3.910989 TCGAATGGAGGGAGTATTGAGA 58.089 45.455 0.00 0.00 0.00 3.27
311 312 4.672587 TTCGAATGGAGGGAGTATTGAG 57.327 45.455 0.00 0.00 0.00 3.02
312 313 5.429681 TTTTCGAATGGAGGGAGTATTGA 57.570 39.130 0.00 0.00 0.00 2.57
313 314 7.986085 ATATTTTCGAATGGAGGGAGTATTG 57.014 36.000 0.00 0.00 0.00 1.90
314 315 8.881262 ACTATATTTTCGAATGGAGGGAGTATT 58.119 33.333 0.00 0.00 0.00 1.89
315 316 8.314751 CACTATATTTTCGAATGGAGGGAGTAT 58.685 37.037 0.00 0.00 0.00 2.12
316 317 7.667557 CACTATATTTTCGAATGGAGGGAGTA 58.332 38.462 0.00 0.00 0.00 2.59
317 318 6.525629 CACTATATTTTCGAATGGAGGGAGT 58.474 40.000 0.00 0.00 0.00 3.85
318 319 5.409826 GCACTATATTTTCGAATGGAGGGAG 59.590 44.000 0.00 0.00 0.00 4.30
319 320 5.305585 GCACTATATTTTCGAATGGAGGGA 58.694 41.667 0.00 0.00 0.00 4.20
320 321 4.152402 CGCACTATATTTTCGAATGGAGGG 59.848 45.833 0.00 0.00 0.00 4.30
321 322 4.377431 GCGCACTATATTTTCGAATGGAGG 60.377 45.833 0.30 0.00 0.00 4.30
322 323 4.377431 GGCGCACTATATTTTCGAATGGAG 60.377 45.833 10.83 0.00 0.00 3.86
323 324 3.496884 GGCGCACTATATTTTCGAATGGA 59.503 43.478 10.83 0.00 0.00 3.41
324 325 3.364964 GGGCGCACTATATTTTCGAATGG 60.365 47.826 10.83 0.00 0.00 3.16
325 326 3.664276 CGGGCGCACTATATTTTCGAATG 60.664 47.826 8.62 0.00 0.00 2.67
326 327 2.478894 CGGGCGCACTATATTTTCGAAT 59.521 45.455 8.62 0.00 0.00 3.34
327 328 1.862201 CGGGCGCACTATATTTTCGAA 59.138 47.619 8.62 0.00 0.00 3.71
328 329 1.493772 CGGGCGCACTATATTTTCGA 58.506 50.000 8.62 0.00 0.00 3.71
329 330 0.110823 GCGGGCGCACTATATTTTCG 60.111 55.000 8.62 0.00 41.49 3.46
330 331 0.110823 CGCGGGCGCACTATATTTTC 60.111 55.000 8.62 0.00 42.06 2.29
331 332 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
332 333 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
345 346 3.488090 GAACCTCGGAAAGCGCGG 61.488 66.667 8.83 0.00 0.00 6.46
346 347 2.314647 TTGAACCTCGGAAAGCGCG 61.315 57.895 0.00 0.00 0.00 6.86
347 348 1.206831 GTTGAACCTCGGAAAGCGC 59.793 57.895 0.00 0.00 0.00 5.92
348 349 1.226746 AAGTTGAACCTCGGAAAGCG 58.773 50.000 0.00 0.00 0.00 4.68
349 350 2.616842 TCAAAGTTGAACCTCGGAAAGC 59.383 45.455 0.00 0.00 33.55 3.51
350 351 3.003378 GGTCAAAGTTGAACCTCGGAAAG 59.997 47.826 0.00 0.00 38.96 2.62
351 352 2.946990 GGTCAAAGTTGAACCTCGGAAA 59.053 45.455 0.00 0.00 38.96 3.13
352 353 2.092861 TGGTCAAAGTTGAACCTCGGAA 60.093 45.455 6.62 0.00 44.20 4.30
353 354 1.487142 TGGTCAAAGTTGAACCTCGGA 59.513 47.619 6.62 0.00 44.20 4.55
354 355 1.961793 TGGTCAAAGTTGAACCTCGG 58.038 50.000 6.62 0.00 44.20 4.63
355 356 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
356 357 9.974980 TTAAATTTATGGTCAAAGTTGAACCTC 57.025 29.630 6.62 0.00 44.20 3.85
357 358 9.758651 GTTAAATTTATGGTCAAAGTTGAACCT 57.241 29.630 6.62 0.00 44.20 3.50
358 359 8.984764 GGTTAAATTTATGGTCAAAGTTGAACC 58.015 33.333 6.62 6.25 44.20 3.62
359 360 9.535878 TGGTTAAATTTATGGTCAAAGTTGAAC 57.464 29.630 1.98 1.98 45.04 3.18
361 362 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
362 363 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
363 364 7.654116 CCGTTGGTTAAATTTATGGTCAAAGTT 59.346 33.333 0.00 0.00 31.36 2.66
364 365 7.149307 CCGTTGGTTAAATTTATGGTCAAAGT 58.851 34.615 0.00 0.00 0.00 2.66
365 366 6.588373 CCCGTTGGTTAAATTTATGGTCAAAG 59.412 38.462 0.00 4.65 0.00 2.77
366 367 6.267014 TCCCGTTGGTTAAATTTATGGTCAAA 59.733 34.615 0.00 0.00 0.00 2.69
367 368 5.773680 TCCCGTTGGTTAAATTTATGGTCAA 59.226 36.000 0.00 0.00 0.00 3.18
368 369 5.183522 GTCCCGTTGGTTAAATTTATGGTCA 59.816 40.000 0.00 0.00 0.00 4.02
369 370 5.393352 GGTCCCGTTGGTTAAATTTATGGTC 60.393 44.000 0.00 0.00 0.00 4.02
370 371 4.463539 GGTCCCGTTGGTTAAATTTATGGT 59.536 41.667 0.00 0.00 0.00 3.55
371 372 4.463186 TGGTCCCGTTGGTTAAATTTATGG 59.537 41.667 0.00 0.00 0.00 2.74
372 373 5.646577 TGGTCCCGTTGGTTAAATTTATG 57.353 39.130 0.00 0.00 0.00 1.90
373 374 5.776208 AGTTGGTCCCGTTGGTTAAATTTAT 59.224 36.000 0.00 0.00 0.00 1.40
374 375 5.009811 CAGTTGGTCCCGTTGGTTAAATTTA 59.990 40.000 0.00 0.00 0.00 1.40
375 376 3.962063 AGTTGGTCCCGTTGGTTAAATTT 59.038 39.130 0.00 0.00 0.00 1.82
376 377 3.319689 CAGTTGGTCCCGTTGGTTAAATT 59.680 43.478 0.00 0.00 0.00 1.82
377 378 2.888414 CAGTTGGTCCCGTTGGTTAAAT 59.112 45.455 0.00 0.00 0.00 1.40
378 379 2.299521 CAGTTGGTCCCGTTGGTTAAA 58.700 47.619 0.00 0.00 0.00 1.52
379 380 1.970092 CAGTTGGTCCCGTTGGTTAA 58.030 50.000 0.00 0.00 0.00 2.01
380 381 0.535553 GCAGTTGGTCCCGTTGGTTA 60.536 55.000 0.00 0.00 0.00 2.85
381 382 1.826487 GCAGTTGGTCCCGTTGGTT 60.826 57.895 0.00 0.00 0.00 3.67
382 383 2.203294 GCAGTTGGTCCCGTTGGT 60.203 61.111 0.00 0.00 0.00 3.67
383 384 3.353836 CGCAGTTGGTCCCGTTGG 61.354 66.667 0.00 0.00 0.00 3.77
384 385 3.353836 CCGCAGTTGGTCCCGTTG 61.354 66.667 0.00 0.00 0.00 4.10
392 393 4.697756 TTCTCCCGCCGCAGTTGG 62.698 66.667 0.00 0.00 0.00 3.77
393 394 1.791103 TTTTTCTCCCGCCGCAGTTG 61.791 55.000 0.00 0.00 0.00 3.16
394 395 1.527380 TTTTTCTCCCGCCGCAGTT 60.527 52.632 0.00 0.00 0.00 3.16
395 396 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
441 442 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
442 443 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
443 444 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
444 445 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
445 446 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
446 447 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
447 448 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
472 473 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
473 474 9.434559 GTAAATTTAACTATCAAGACCGATTGC 57.565 33.333 0.00 0.00 0.00 3.56
474 475 9.632969 CGTAAATTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
475 476 8.823818 CCGTAAATTTAACTATCAAGACCGATT 58.176 33.333 0.00 0.00 0.00 3.34
476 477 7.983484 ACCGTAAATTTAACTATCAAGACCGAT 59.017 33.333 0.00 0.00 0.00 4.18
477 478 7.322664 ACCGTAAATTTAACTATCAAGACCGA 58.677 34.615 0.00 0.00 0.00 4.69
478 479 7.276218 TGACCGTAAATTTAACTATCAAGACCG 59.724 37.037 0.00 0.00 0.00 4.79
479 480 8.483307 TGACCGTAAATTTAACTATCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
488 489 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
489 490 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
490 491 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
491 492 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
492 493 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
493 494 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
494 495 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
495 496 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
496 497 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
497 498 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
498 499 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
499 500 0.934496 TCGTGCTTCAACTTTGACCG 59.066 50.000 0.00 0.00 36.83 4.79
500 501 2.210116 TCTCGTGCTTCAACTTTGACC 58.790 47.619 0.00 0.00 36.83 4.02
501 502 3.944422 TTCTCGTGCTTCAACTTTGAC 57.056 42.857 0.00 0.00 36.83 3.18
502 503 6.481976 TCTTTATTCTCGTGCTTCAACTTTGA 59.518 34.615 0.00 0.00 34.92 2.69
503 504 6.658831 TCTTTATTCTCGTGCTTCAACTTTG 58.341 36.000 0.00 0.00 0.00 2.77
504 505 6.861065 TCTTTATTCTCGTGCTTCAACTTT 57.139 33.333 0.00 0.00 0.00 2.66
505 506 6.861065 TTCTTTATTCTCGTGCTTCAACTT 57.139 33.333 0.00 0.00 0.00 2.66
506 507 6.483640 ACTTTCTTTATTCTCGTGCTTCAACT 59.516 34.615 0.00 0.00 0.00 3.16
507 508 6.659776 ACTTTCTTTATTCTCGTGCTTCAAC 58.340 36.000 0.00 0.00 0.00 3.18
508 509 6.861065 ACTTTCTTTATTCTCGTGCTTCAA 57.139 33.333 0.00 0.00 0.00 2.69
509 510 7.152645 AGTACTTTCTTTATTCTCGTGCTTCA 58.847 34.615 0.00 0.00 0.00 3.02
510 511 7.583860 AGTACTTTCTTTATTCTCGTGCTTC 57.416 36.000 0.00 0.00 0.00 3.86
511 512 8.086522 TGTAGTACTTTCTTTATTCTCGTGCTT 58.913 33.333 0.00 0.00 0.00 3.91
512 513 7.600065 TGTAGTACTTTCTTTATTCTCGTGCT 58.400 34.615 0.00 0.00 0.00 4.40
513 514 7.807687 TGTAGTACTTTCTTTATTCTCGTGC 57.192 36.000 0.00 0.00 0.00 5.34
515 516 9.924650 ACAATGTAGTACTTTCTTTATTCTCGT 57.075 29.630 0.00 0.00 0.00 4.18
523 524 9.349713 TCCATTTCACAATGTAGTACTTTCTTT 57.650 29.630 0.00 0.00 38.58 2.52
524 525 8.918202 TCCATTTCACAATGTAGTACTTTCTT 57.082 30.769 0.00 0.00 38.58 2.52
525 526 8.918202 TTCCATTTCACAATGTAGTACTTTCT 57.082 30.769 0.00 0.00 38.58 2.52
526 527 9.612620 CTTTCCATTTCACAATGTAGTACTTTC 57.387 33.333 0.00 0.00 38.58 2.62
527 528 9.349713 TCTTTCCATTTCACAATGTAGTACTTT 57.650 29.630 0.00 0.00 38.58 2.66
528 529 8.918202 TCTTTCCATTTCACAATGTAGTACTT 57.082 30.769 0.00 0.00 38.58 2.24
529 530 8.157476 ACTCTTTCCATTTCACAATGTAGTACT 58.843 33.333 0.00 0.00 38.58 2.73
530 531 8.324163 ACTCTTTCCATTTCACAATGTAGTAC 57.676 34.615 0.00 0.00 38.58 2.73
532 533 9.520515 AATACTCTTTCCATTTCACAATGTAGT 57.479 29.630 0.00 0.00 38.58 2.73
567 568 9.821240 AGAATTCTATCATGTCTATACTGGAGT 57.179 33.333 6.06 0.00 0.00 3.85
579 580 9.821240 ACCTCTCTATGTAGAATTCTATCATGT 57.179 33.333 25.13 16.85 0.00 3.21
581 582 9.474313 GGACCTCTCTATGTAGAATTCTATCAT 57.526 37.037 17.95 20.95 0.00 2.45
582 583 7.891183 GGGACCTCTCTATGTAGAATTCTATCA 59.109 40.741 17.95 16.49 0.00 2.15
583 584 7.891183 TGGGACCTCTCTATGTAGAATTCTATC 59.109 40.741 17.95 11.97 0.00 2.08
584 585 7.672239 GTGGGACCTCTCTATGTAGAATTCTAT 59.328 40.741 17.95 7.17 0.00 1.98
585 586 7.005296 GTGGGACCTCTCTATGTAGAATTCTA 58.995 42.308 11.24 11.24 0.00 2.10
586 587 5.836358 GTGGGACCTCTCTATGTAGAATTCT 59.164 44.000 13.56 13.56 0.00 2.40
587 588 5.011227 GGTGGGACCTCTCTATGTAGAATTC 59.989 48.000 0.00 0.00 34.73 2.17
588 589 4.902448 GGTGGGACCTCTCTATGTAGAATT 59.098 45.833 0.00 0.00 34.73 2.17
589 590 4.484912 GGTGGGACCTCTCTATGTAGAAT 58.515 47.826 0.00 0.00 34.73 2.40
590 591 3.373877 GGGTGGGACCTCTCTATGTAGAA 60.374 52.174 0.00 0.00 38.64 2.10
591 592 2.177233 GGGTGGGACCTCTCTATGTAGA 59.823 54.545 0.00 0.00 38.64 2.59
592 593 2.178106 AGGGTGGGACCTCTCTATGTAG 59.822 54.545 0.00 0.00 38.64 2.74
593 594 2.224077 AGGGTGGGACCTCTCTATGTA 58.776 52.381 0.00 0.00 38.64 2.29
594 595 1.019650 AGGGTGGGACCTCTCTATGT 58.980 55.000 0.00 0.00 38.64 2.29
595 596 3.169099 CATAGGGTGGGACCTCTCTATG 58.831 54.545 19.99 19.99 41.50 2.23
596 597 2.493687 GCATAGGGTGGGACCTCTCTAT 60.494 54.545 6.93 6.93 42.09 1.98
597 598 1.133136 GCATAGGGTGGGACCTCTCTA 60.133 57.143 2.76 2.76 42.09 2.43
598 599 0.399233 GCATAGGGTGGGACCTCTCT 60.399 60.000 0.00 0.00 42.09 3.10
611 612 4.456911 AGACAACAACAACAGATGCATAGG 59.543 41.667 0.00 0.00 0.00 2.57
613 614 6.147656 CAGTAGACAACAACAACAGATGCATA 59.852 38.462 0.00 0.00 0.00 3.14
630 631 1.064240 TGATACGGGAGGCAGTAGACA 60.064 52.381 0.00 0.00 0.00 3.41
631 632 1.609555 CTGATACGGGAGGCAGTAGAC 59.390 57.143 0.00 0.00 0.00 2.59
632 633 1.214673 ACTGATACGGGAGGCAGTAGA 59.785 52.381 0.00 0.00 38.46 2.59
662 663 3.284617 CATGTGCCTTCTCCATCATCAA 58.715 45.455 0.00 0.00 0.00 2.57
698 699 1.734465 CGATGGGTGAAAGCTGAGAAC 59.266 52.381 0.00 0.00 0.00 3.01
716 717 1.493446 TGCTCCCTCTGTCCTATACGA 59.507 52.381 0.00 0.00 0.00 3.43
718 719 2.952116 ACTGCTCCCTCTGTCCTATAC 58.048 52.381 0.00 0.00 0.00 1.47
719 720 3.722627 ACTACTGCTCCCTCTGTCCTATA 59.277 47.826 0.00 0.00 0.00 1.31
722 723 0.707616 ACTACTGCTCCCTCTGTCCT 59.292 55.000 0.00 0.00 0.00 3.85
724 725 3.007473 ACTACTACTGCTCCCTCTGTC 57.993 52.381 0.00 0.00 0.00 3.51
728 729 3.700038 TGCTTTACTACTACTGCTCCCTC 59.300 47.826 0.00 0.00 0.00 4.30
730 731 4.159879 TCTTGCTTTACTACTACTGCTCCC 59.840 45.833 0.00 0.00 0.00 4.30
731 732 5.103687 GTCTTGCTTTACTACTACTGCTCC 58.896 45.833 0.00 0.00 0.00 4.70
733 734 4.527038 TGGTCTTGCTTTACTACTACTGCT 59.473 41.667 0.00 0.00 0.00 4.24
734 735 4.817517 TGGTCTTGCTTTACTACTACTGC 58.182 43.478 0.00 0.00 0.00 4.40
735 736 5.744345 CGATGGTCTTGCTTTACTACTACTG 59.256 44.000 0.00 0.00 0.00 2.74
736 737 5.418209 ACGATGGTCTTGCTTTACTACTACT 59.582 40.000 0.00 0.00 0.00 2.57
745 1162 1.798813 GAACGACGATGGTCTTGCTTT 59.201 47.619 0.00 0.00 41.16 3.51
749 1166 0.716108 GCTGAACGACGATGGTCTTG 59.284 55.000 0.00 0.00 41.16 3.02
823 1242 9.955102 AGACTTATATTTAAAAACGGAAGGAGT 57.045 29.630 0.00 0.00 0.00 3.85
844 1263 9.574516 ACCACAATAAAATCTTTACAGAGACTT 57.425 29.630 0.00 0.00 30.36 3.01
845 1264 9.220767 GACCACAATAAAATCTTTACAGAGACT 57.779 33.333 0.00 0.00 30.36 3.24
846 1265 8.169268 CGACCACAATAAAATCTTTACAGAGAC 58.831 37.037 0.00 0.00 30.36 3.36
847 1266 7.876068 ACGACCACAATAAAATCTTTACAGAGA 59.124 33.333 0.00 0.00 30.36 3.10
848 1267 8.029642 ACGACCACAATAAAATCTTTACAGAG 57.970 34.615 0.00 0.00 30.36 3.35
849 1268 7.972832 ACGACCACAATAAAATCTTTACAGA 57.027 32.000 0.00 0.00 0.00 3.41
850 1269 9.702726 CATACGACCACAATAAAATCTTTACAG 57.297 33.333 0.00 0.00 0.00 2.74
851 1270 9.221933 ACATACGACCACAATAAAATCTTTACA 57.778 29.630 0.00 0.00 0.00 2.41
854 1273 9.444600 ACTACATACGACCACAATAAAATCTTT 57.555 29.630 0.00 0.00 0.00 2.52
855 1274 9.444600 AACTACATACGACCACAATAAAATCTT 57.555 29.630 0.00 0.00 0.00 2.40
856 1275 9.095065 GAACTACATACGACCACAATAAAATCT 57.905 33.333 0.00 0.00 0.00 2.40
857 1276 8.875803 TGAACTACATACGACCACAATAAAATC 58.124 33.333 0.00 0.00 0.00 2.17
858 1277 8.780846 TGAACTACATACGACCACAATAAAAT 57.219 30.769 0.00 0.00 0.00 1.82
859 1278 8.780846 ATGAACTACATACGACCACAATAAAA 57.219 30.769 0.00 0.00 37.46 1.52
860 1279 9.524106 CTATGAACTACATACGACCACAATAAA 57.476 33.333 0.00 0.00 40.07 1.40
861 1280 8.689061 ACTATGAACTACATACGACCACAATAA 58.311 33.333 0.00 0.00 40.07 1.40
862 1281 8.132995 CACTATGAACTACATACGACCACAATA 58.867 37.037 0.00 0.00 40.07 1.90
863 1282 6.978659 CACTATGAACTACATACGACCACAAT 59.021 38.462 0.00 0.00 40.07 2.71
864 1283 6.151480 TCACTATGAACTACATACGACCACAA 59.849 38.462 0.00 0.00 40.07 3.33
865 1284 5.648960 TCACTATGAACTACATACGACCACA 59.351 40.000 0.00 0.00 40.07 4.17
866 1285 6.127810 TCACTATGAACTACATACGACCAC 57.872 41.667 0.00 0.00 40.07 4.16
867 1286 6.762702 TTCACTATGAACTACATACGACCA 57.237 37.500 0.00 0.00 40.07 4.02
868 1287 8.136165 AGATTTCACTATGAACTACATACGACC 58.864 37.037 0.00 0.00 35.89 4.79
869 1288 9.517609 AAGATTTCACTATGAACTACATACGAC 57.482 33.333 0.00 0.00 35.89 4.34
900 1319 4.141321 ACTCCCTCCGTTCCTAAAGTTTTT 60.141 41.667 0.00 0.00 0.00 1.94
901 1320 3.393609 ACTCCCTCCGTTCCTAAAGTTTT 59.606 43.478 0.00 0.00 0.00 2.43
902 1321 2.977580 ACTCCCTCCGTTCCTAAAGTTT 59.022 45.455 0.00 0.00 0.00 2.66
903 1322 2.617658 ACTCCCTCCGTTCCTAAAGTT 58.382 47.619 0.00 0.00 0.00 2.66
904 1323 2.322339 ACTCCCTCCGTTCCTAAAGT 57.678 50.000 0.00 0.00 0.00 2.66
905 1324 3.363627 ACTACTCCCTCCGTTCCTAAAG 58.636 50.000 0.00 0.00 0.00 1.85
906 1325 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
907 1326 3.782523 TCTACTACTCCCTCCGTTCCTAA 59.217 47.826 0.00 0.00 0.00 2.69
908 1327 3.135530 GTCTACTACTCCCTCCGTTCCTA 59.864 52.174 0.00 0.00 0.00 2.94
909 1328 2.092484 GTCTACTACTCCCTCCGTTCCT 60.092 54.545 0.00 0.00 0.00 3.36
910 1329 2.296792 GTCTACTACTCCCTCCGTTCC 58.703 57.143 0.00 0.00 0.00 3.62
911 1330 2.996631 TGTCTACTACTCCCTCCGTTC 58.003 52.381 0.00 0.00 0.00 3.95
912 1331 3.446442 TTGTCTACTACTCCCTCCGTT 57.554 47.619 0.00 0.00 0.00 4.44
913 1332 3.009916 TCTTTGTCTACTACTCCCTCCGT 59.990 47.826 0.00 0.00 0.00 4.69
914 1333 3.618351 TCTTTGTCTACTACTCCCTCCG 58.382 50.000 0.00 0.00 0.00 4.63
915 1334 4.602107 ACTCTTTGTCTACTACTCCCTCC 58.398 47.826 0.00 0.00 0.00 4.30
916 1335 5.294060 CGTACTCTTTGTCTACTACTCCCTC 59.706 48.000 0.00 0.00 0.00 4.30
917 1336 5.046014 TCGTACTCTTTGTCTACTACTCCCT 60.046 44.000 0.00 0.00 0.00 4.20
918 1337 5.181748 TCGTACTCTTTGTCTACTACTCCC 58.818 45.833 0.00 0.00 0.00 4.30
919 1338 6.541969 GTTCGTACTCTTTGTCTACTACTCC 58.458 44.000 0.00 0.00 0.00 3.85
920 1339 6.239945 CGTTCGTACTCTTTGTCTACTACTC 58.760 44.000 0.00 0.00 0.00 2.59
921 1340 5.121454 CCGTTCGTACTCTTTGTCTACTACT 59.879 44.000 0.00 0.00 0.00 2.57
922 1341 5.120830 TCCGTTCGTACTCTTTGTCTACTAC 59.879 44.000 0.00 0.00 0.00 2.73
923 1342 5.237815 TCCGTTCGTACTCTTTGTCTACTA 58.762 41.667 0.00 0.00 0.00 1.82
924 1343 4.067896 TCCGTTCGTACTCTTTGTCTACT 58.932 43.478 0.00 0.00 0.00 2.57
925 1344 4.410492 TCCGTTCGTACTCTTTGTCTAC 57.590 45.455 0.00 0.00 0.00 2.59
1040 1470 2.609610 TTAGTGCGCCCCTCCCTT 60.610 61.111 4.18 0.00 0.00 3.95
1056 1486 3.303135 TCTGTCTCTGCGCCGGTT 61.303 61.111 4.18 0.00 0.00 4.44
1144 1574 2.121506 AAGGAAGGGTGCCCAGGA 60.122 61.111 10.26 0.00 38.92 3.86
1156 1586 3.496870 GGGAGAGAAAACTCTGCAAGGAA 60.497 47.826 17.43 0.00 42.52 3.36
1168 1598 0.036952 CAGCAGCGAGGGAGAGAAAA 60.037 55.000 0.00 0.00 0.00 2.29
1171 1601 3.456365 GCAGCAGCGAGGGAGAGA 61.456 66.667 0.00 0.00 0.00 3.10
1224 1663 0.254747 AAGCTAGTTAATGGCCGCCA 59.745 50.000 16.17 16.17 35.62 5.69
1236 1675 4.402155 CCTGTTCATCAGAGAGAAGCTAGT 59.598 45.833 0.00 0.00 46.27 2.57
1239 1678 3.439154 TCCTGTTCATCAGAGAGAAGCT 58.561 45.455 0.00 0.00 46.27 3.74
1240 1679 3.883830 TCCTGTTCATCAGAGAGAAGC 57.116 47.619 0.00 0.00 46.27 3.86
1442 1894 2.218603 CAGGTAGGAACAACACACCAC 58.781 52.381 0.00 0.00 0.00 4.16
1455 1907 2.367202 ATCCCACGCACCAGGTAGG 61.367 63.158 0.00 0.00 45.67 3.18
1458 1910 4.033776 CCATCCCACGCACCAGGT 62.034 66.667 0.00 0.00 0.00 4.00
1461 1913 2.746412 CTTGTCCATCCCACGCACCA 62.746 60.000 0.00 0.00 0.00 4.17
1478 1930 0.848053 TTTCCGGACCAAACCCTCTT 59.152 50.000 1.83 0.00 0.00 2.85
1499 1951 4.273480 CACGGCTGGAGATGTTTTTATAGG 59.727 45.833 0.00 0.00 0.00 2.57
1508 1960 1.608717 GGAGACACGGCTGGAGATGT 61.609 60.000 0.00 0.00 0.00 3.06
1633 2090 3.948719 GGGTTCGGCCTGTGACCA 61.949 66.667 0.00 0.00 37.43 4.02
1673 2135 2.203365 TTTTCCCTTGCGCCGGAA 60.203 55.556 5.05 14.66 36.35 4.30
1824 2286 3.002791 CTCTGCTATTTTTCCAGCGTGA 58.997 45.455 0.00 0.00 0.00 4.35
1857 2319 2.045536 CTGCTGTTGGAGGGGCTC 60.046 66.667 0.00 0.00 0.00 4.70
2135 2598 0.179134 GTAGCCTTCGACACGATGCT 60.179 55.000 17.49 17.49 43.20 3.79
2143 2606 0.460987 AGCATGCAGTAGCCTTCGAC 60.461 55.000 21.98 0.00 41.13 4.20
2198 2661 1.069227 GGCGCTGAAATGTTTTCTCGT 60.069 47.619 7.64 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.