Multiple sequence alignment - TraesCS3A01G188700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G188700 chr3A 100.000 3361 0 0 1 3361 230090482 230093842 0.000000e+00 6207.0
1 TraesCS3A01G188700 chr3A 94.062 421 25 0 2896 3316 698704780 698705200 1.020000e-179 640.0
2 TraesCS3A01G188700 chr3A 88.337 403 29 11 2382 2773 698704359 698704754 5.080000e-128 468.0
3 TraesCS3A01G188700 chr3A 96.226 53 2 0 1380 1432 230091795 230091847 1.660000e-13 87.9
4 TraesCS3A01G188700 chr3A 96.226 53 2 0 1314 1366 230091861 230091913 1.660000e-13 87.9
5 TraesCS3A01G188700 chr3B 92.193 1076 43 11 1314 2369 260655841 260656895 0.000000e+00 1483.0
6 TraesCS3A01G188700 chr3B 89.209 936 57 17 660 1584 260655122 260656024 0.000000e+00 1129.0
7 TraesCS3A01G188700 chr3B 91.262 412 30 5 2954 3361 684413932 684414341 1.050000e-154 556.0
8 TraesCS3A01G188700 chr3B 87.234 423 37 10 2363 2773 684415666 684416083 1.830000e-127 466.0
9 TraesCS3A01G188700 chr3B 81.030 369 60 7 161 525 260651704 260652066 5.490000e-73 285.0
10 TraesCS3A01G188700 chr3B 95.699 93 3 1 2807 2899 495236296 495236205 7.510000e-32 148.0
11 TraesCS3A01G188700 chr3B 88.793 116 9 4 2814 2928 452563687 452563575 4.520000e-29 139.0
12 TraesCS3A01G188700 chr3D 90.951 1072 47 12 1314 2369 182202874 182203911 0.000000e+00 1397.0
13 TraesCS3A01G188700 chr3D 87.847 1045 64 22 552 1582 182202060 182203055 0.000000e+00 1168.0
14 TraesCS3A01G188700 chr3D 92.505 467 32 3 2896 3361 483004206 483004670 0.000000e+00 665.0
15 TraesCS3A01G188700 chr3D 86.854 426 40 9 2364 2773 483003756 483004181 2.360000e-126 462.0
16 TraesCS3A01G188700 chr3D 80.488 369 64 6 161 525 182201359 182201723 3.300000e-70 276.0
17 TraesCS3A01G188700 chr3D 86.364 110 3 3 1071 1176 364518365 364518466 3.550000e-20 110.0
18 TraesCS3A01G188700 chrUn 94.433 467 25 1 2896 3361 26238406 26238872 0.000000e+00 717.0
19 TraesCS3A01G188700 chrUn 88.652 423 32 11 2367 2773 26237959 26238381 5.010000e-138 501.0
20 TraesCS3A01G188700 chrUn 97.778 90 1 1 2814 2903 12907588 12907676 1.610000e-33 154.0
21 TraesCS3A01G188700 chrUn 88.000 100 1 7 1053 1150 47926374 47926284 1.280000e-19 108.0
22 TraesCS3A01G188700 chrUn 88.000 100 1 4 1053 1150 252528822 252528912 1.280000e-19 108.0
23 TraesCS3A01G188700 chr5D 94.218 467 25 2 2896 3361 84682441 84682906 0.000000e+00 712.0
24 TraesCS3A01G188700 chr5D 95.370 432 20 0 2896 3327 449649078 449648647 0.000000e+00 688.0
25 TraesCS3A01G188700 chr5D 94.595 370 20 0 2896 3265 228486691 228487060 1.050000e-159 573.0
26 TraesCS3A01G188700 chr5D 88.916 415 33 10 2371 2773 84682003 84682416 1.800000e-137 499.0
27 TraesCS3A01G188700 chr5D 87.981 416 36 9 2370 2773 449649516 449649103 2.350000e-131 479.0
28 TraesCS3A01G188700 chr2D 93.576 467 24 5 2896 3361 99118973 99119434 0.000000e+00 691.0
29 TraesCS3A01G188700 chr2A 93.162 468 26 6 2896 3361 209151391 209150928 0.000000e+00 682.0
30 TraesCS3A01G188700 chr2A 86.183 427 45 9 2358 2773 209151839 209151416 1.840000e-122 449.0
31 TraesCS3A01G188700 chr2A 93.939 99 4 2 2810 2906 199398876 199398974 7.510000e-32 148.0
32 TraesCS3A01G188700 chr2A 95.652 92 4 0 2808 2899 693209887 693209978 7.510000e-32 148.0
33 TraesCS3A01G188700 chr2A 93.878 98 4 2 2807 2902 236839247 236839344 2.700000e-31 147.0
34 TraesCS3A01G188700 chr2A 91.667 108 4 4 2802 2906 3970063 3969958 9.720000e-31 145.0
35 TraesCS3A01G188700 chr5A 93.384 393 26 0 1007 1399 352403009 352402617 1.740000e-162 582.0
36 TraesCS3A01G188700 chr6B 92.176 409 31 1 2954 3361 643569977 643569569 8.090000e-161 577.0
37 TraesCS3A01G188700 chr1D 88.010 417 33 11 2369 2773 195998389 195998800 8.440000e-131 477.0
38 TraesCS3A01G188700 chr7B 86.091 417 46 7 2369 2773 611230328 611229912 3.980000e-119 438.0
39 TraesCS3A01G188700 chr7B 95.699 93 4 0 2813 2905 696592254 696592346 2.090000e-32 150.0
40 TraesCS3A01G188700 chr7D 90.549 328 28 1 944 1268 619228421 619228748 6.660000e-117 431.0
41 TraesCS3A01G188700 chr4B 98.851 87 1 0 2814 2900 138846364 138846450 4.490000e-34 156.0
42 TraesCS3A01G188700 chr1B 93.939 66 2 2 1053 1116 347775468 347775533 7.670000e-17 99.0
43 TraesCS3A01G188700 chr2B 85.000 100 4 4 1053 1150 798747032 798747122 1.280000e-14 91.6
44 TraesCS3A01G188700 chr7A 95.455 44 2 0 1073 1116 92461422 92461465 1.670000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G188700 chr3A 230090482 230093842 3360 False 2127.600000 6207 97.484000 1 3361 3 chr3A.!!$F1 3360
1 TraesCS3A01G188700 chr3A 698704359 698705200 841 False 554.000000 640 91.199500 2382 3316 2 chr3A.!!$F2 934
2 TraesCS3A01G188700 chr3B 260651704 260656895 5191 False 965.666667 1483 87.477333 161 2369 3 chr3B.!!$F1 2208
3 TraesCS3A01G188700 chr3B 684413932 684416083 2151 False 511.000000 556 89.248000 2363 3361 2 chr3B.!!$F2 998
4 TraesCS3A01G188700 chr3D 182201359 182203911 2552 False 947.000000 1397 86.428667 161 2369 3 chr3D.!!$F2 2208
5 TraesCS3A01G188700 chr3D 483003756 483004670 914 False 563.500000 665 89.679500 2364 3361 2 chr3D.!!$F3 997
6 TraesCS3A01G188700 chrUn 26237959 26238872 913 False 609.000000 717 91.542500 2367 3361 2 chrUn.!!$F3 994
7 TraesCS3A01G188700 chr5D 84682003 84682906 903 False 605.500000 712 91.567000 2371 3361 2 chr5D.!!$F2 990
8 TraesCS3A01G188700 chr5D 449648647 449649516 869 True 583.500000 688 91.675500 2370 3327 2 chr5D.!!$R1 957
9 TraesCS3A01G188700 chr2A 209150928 209151839 911 True 565.500000 682 89.672500 2358 3361 2 chr2A.!!$R2 1003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.098200 TCGAACGGACGAGTAGCATG 59.902 55.0 0.0 0.0 37.37 4.06 F
617 3572 0.098728 CGTGCTTTAGGGGCGAAATG 59.901 55.0 0.0 0.0 0.00 2.32 F
627 3582 0.586802 GGGCGAAATGAAGGCGTATC 59.413 55.0 0.0 0.0 0.00 2.24 F
637 3592 0.753262 AAGGCGTATCTCCTGCGAAT 59.247 50.0 0.0 0.0 34.56 3.34 F
948 3911 0.969894 GTATAGCATCTCCCCACGCT 59.030 55.0 0.0 0.0 38.51 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 4534 0.179134 CGCGTCCTTAGTCTCCAAGG 60.179 60.0 0.00 0.0 43.40 3.61 R
1500 4535 0.179134 CCGCGTCCTTAGTCTCCAAG 60.179 60.0 4.92 0.0 0.00 3.61 R
1773 4808 0.708802 TTTACCTCTCCTCCTCCGGT 59.291 55.0 0.00 0.0 0.00 5.28 R
1897 4932 1.808411 GAAGATGTTCTCCGTTGCCA 58.192 50.0 0.00 0.0 0.00 4.92 R
2757 5833 0.329261 CTGGGAACATCTGGGAGCAA 59.671 55.0 0.00 0.0 41.51 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.972832 TTTAAAGAAGAGCAAAGTATTCCGA 57.027 32.000 0.00 0.00 0.00 4.55
26 27 7.596749 TTAAAGAAGAGCAAAGTATTCCGAG 57.403 36.000 0.00 0.00 0.00 4.63
27 28 4.130286 AGAAGAGCAAAGTATTCCGAGG 57.870 45.455 0.00 0.00 0.00 4.63
28 29 3.769844 AGAAGAGCAAAGTATTCCGAGGA 59.230 43.478 0.00 0.00 0.00 3.71
29 30 4.223032 AGAAGAGCAAAGTATTCCGAGGAA 59.777 41.667 7.06 7.06 38.59 3.36
30 31 4.130286 AGAGCAAAGTATTCCGAGGAAG 57.870 45.455 10.56 0.00 37.56 3.46
31 32 2.609916 GAGCAAAGTATTCCGAGGAAGC 59.390 50.000 10.56 7.01 37.56 3.86
32 33 2.027192 AGCAAAGTATTCCGAGGAAGCA 60.027 45.455 10.56 0.00 37.56 3.91
34 35 3.190535 GCAAAGTATTCCGAGGAAGCAAA 59.809 43.478 10.56 0.00 37.56 3.68
36 37 4.553330 AAGTATTCCGAGGAAGCAAAGA 57.447 40.909 10.56 0.00 37.56 2.52
37 38 4.553330 AGTATTCCGAGGAAGCAAAGAA 57.447 40.909 10.56 0.00 37.56 2.52
38 39 4.906618 AGTATTCCGAGGAAGCAAAGAAA 58.093 39.130 10.56 0.00 37.56 2.52
40 41 4.972514 ATTCCGAGGAAGCAAAGAAATC 57.027 40.909 10.56 0.00 37.56 2.17
41 42 3.417069 TCCGAGGAAGCAAAGAAATCA 57.583 42.857 0.00 0.00 0.00 2.57
42 43 3.750371 TCCGAGGAAGCAAAGAAATCAA 58.250 40.909 0.00 0.00 0.00 2.57
44 45 4.156556 TCCGAGGAAGCAAAGAAATCAATG 59.843 41.667 0.00 0.00 0.00 2.82
45 46 4.418392 CGAGGAAGCAAAGAAATCAATGG 58.582 43.478 0.00 0.00 0.00 3.16
46 47 4.676196 CGAGGAAGCAAAGAAATCAATGGG 60.676 45.833 0.00 0.00 0.00 4.00
47 48 4.419282 AGGAAGCAAAGAAATCAATGGGA 58.581 39.130 0.00 0.00 0.00 4.37
48 49 4.840115 AGGAAGCAAAGAAATCAATGGGAA 59.160 37.500 0.00 0.00 0.00 3.97
49 50 5.307716 AGGAAGCAAAGAAATCAATGGGAAA 59.692 36.000 0.00 0.00 0.00 3.13
50 51 5.997129 GGAAGCAAAGAAATCAATGGGAAAA 59.003 36.000 0.00 0.00 0.00 2.29
51 52 6.073058 GGAAGCAAAGAAATCAATGGGAAAAC 60.073 38.462 0.00 0.00 0.00 2.43
52 53 5.308014 AGCAAAGAAATCAATGGGAAAACC 58.692 37.500 0.00 0.00 40.81 3.27
105 106 2.810028 AAAAGCAAACGAACGAACGA 57.190 40.000 11.97 0.00 37.03 3.85
107 108 2.081336 AAGCAAACGAACGAACGAAC 57.919 45.000 11.97 0.00 37.03 3.95
109 110 1.099120 GCAAACGAACGAACGAACAC 58.901 50.000 11.97 0.00 37.03 3.32
112 113 2.638628 AACGAACGAACGAACACATG 57.361 45.000 11.97 0.00 37.03 3.21
114 115 1.784856 ACGAACGAACGAACACATGAG 59.215 47.619 0.00 0.00 37.03 2.90
115 116 1.460267 CGAACGAACGAACACATGAGC 60.460 52.381 0.00 0.00 35.09 4.26
116 117 0.506932 AACGAACGAACACATGAGCG 59.493 50.000 0.00 0.00 0.00 5.03
118 119 0.781787 CGAACGAACACATGAGCGAA 59.218 50.000 0.00 0.00 0.00 4.70
119 120 1.390123 CGAACGAACACATGAGCGAAT 59.610 47.619 0.00 0.00 0.00 3.34
120 121 2.596862 CGAACGAACACATGAGCGAATA 59.403 45.455 0.00 0.00 0.00 1.75
121 122 3.301197 CGAACGAACACATGAGCGAATAG 60.301 47.826 0.00 0.00 0.00 1.73
123 124 3.179830 ACGAACACATGAGCGAATAGAC 58.820 45.455 0.00 0.00 0.00 2.59
124 125 3.119459 ACGAACACATGAGCGAATAGACT 60.119 43.478 0.00 0.00 0.00 3.24
127 128 3.775202 ACACATGAGCGAATAGACTGAC 58.225 45.455 0.00 0.00 0.00 3.51
129 130 2.223595 ACATGAGCGAATAGACTGACGG 60.224 50.000 0.00 0.00 0.00 4.79
131 132 2.108178 GAGCGAATAGACTGACGGTC 57.892 55.000 6.28 6.28 44.80 4.79
138 139 2.949106 GACTGACGGTCGAACGGA 59.051 61.111 28.62 12.36 38.39 4.69
139 140 1.441682 GACTGACGGTCGAACGGAC 60.442 63.158 28.62 20.28 45.31 4.79
146 147 4.356655 GTCGAACGGACGAGTAGC 57.643 61.111 6.46 0.00 42.88 3.58
147 148 1.499056 GTCGAACGGACGAGTAGCA 59.501 57.895 6.46 0.00 42.88 3.49
149 150 0.098200 TCGAACGGACGAGTAGCATG 59.902 55.000 0.00 0.00 37.37 4.06
150 151 0.179171 CGAACGGACGAGTAGCATGT 60.179 55.000 0.00 0.00 35.09 3.21
151 152 1.731424 CGAACGGACGAGTAGCATGTT 60.731 52.381 0.00 0.00 35.09 2.71
152 153 2.476686 CGAACGGACGAGTAGCATGTTA 60.477 50.000 0.00 0.00 35.09 2.41
153 154 3.703420 GAACGGACGAGTAGCATGTTAT 58.297 45.455 0.00 0.00 0.00 1.89
154 155 3.795623 ACGGACGAGTAGCATGTTATT 57.204 42.857 0.00 0.00 0.00 1.40
155 156 3.444916 ACGGACGAGTAGCATGTTATTG 58.555 45.455 0.00 0.00 0.00 1.90
156 157 3.129813 ACGGACGAGTAGCATGTTATTGA 59.870 43.478 0.00 0.00 0.00 2.57
157 158 3.731216 CGGACGAGTAGCATGTTATTGAG 59.269 47.826 0.00 0.00 0.00 3.02
158 159 4.051922 GGACGAGTAGCATGTTATTGAGG 58.948 47.826 0.00 0.00 0.00 3.86
159 160 3.458189 ACGAGTAGCATGTTATTGAGGC 58.542 45.455 0.00 0.00 0.00 4.70
174 175 2.063541 GAGGCGGCCAATACACATGC 62.064 60.000 23.09 0.00 0.00 4.06
179 180 3.119193 CCAATACACATGCGCCCC 58.881 61.111 4.18 0.00 0.00 5.80
201 202 3.184581 CGCATAAAGGATTAAGGCGAGAC 59.815 47.826 0.00 0.00 44.67 3.36
202 203 3.184581 GCATAAAGGATTAAGGCGAGACG 59.815 47.826 0.00 0.00 0.00 4.18
203 204 4.617959 CATAAAGGATTAAGGCGAGACGA 58.382 43.478 0.00 0.00 0.00 4.20
213 214 2.231529 AGGCGAGACGAATGCTAGTAT 58.768 47.619 0.00 0.00 0.00 2.12
216 217 4.459685 AGGCGAGACGAATGCTAGTATAAT 59.540 41.667 0.00 0.00 0.00 1.28
217 218 5.047943 AGGCGAGACGAATGCTAGTATAATT 60.048 40.000 0.00 0.00 0.00 1.40
221 222 8.945930 GCGAGACGAATGCTAGTATAATTATAC 58.054 37.037 22.80 22.80 39.01 1.47
224 225 7.914346 AGACGAATGCTAGTATAATTATACGCC 59.086 37.037 23.55 17.44 42.51 5.68
225 226 7.541162 ACGAATGCTAGTATAATTATACGCCA 58.459 34.615 23.55 21.01 42.51 5.69
226 227 7.701078 ACGAATGCTAGTATAATTATACGCCAG 59.299 37.037 23.55 21.44 42.51 4.85
239 240 2.135664 ACGCCAGACATAGTATTCGC 57.864 50.000 0.00 0.00 0.00 4.70
248 249 0.318445 ATAGTATTCGCGACGCCCAC 60.318 55.000 9.15 6.94 0.00 4.61
249 250 1.378882 TAGTATTCGCGACGCCCACT 61.379 55.000 9.15 13.77 0.00 4.00
279 280 8.970020 TCACCAATGCAGAATAATGTCTAAAAT 58.030 29.630 0.00 0.00 0.00 1.82
282 283 9.459640 CCAATGCAGAATAATGTCTAAAATCAG 57.540 33.333 0.00 0.00 0.00 2.90
310 311 2.743664 TCTCCGTGCACATTGATTCAAG 59.256 45.455 18.64 0.00 0.00 3.02
312 313 2.226200 TCCGTGCACATTGATTCAAGTG 59.774 45.455 18.64 17.45 35.19 3.16
374 375 8.879342 ACTAAGATTTAGACATGTAGATGTGC 57.121 34.615 10.71 2.62 43.22 4.57
375 376 8.700051 ACTAAGATTTAGACATGTAGATGTGCT 58.300 33.333 10.71 9.64 43.22 4.40
379 380 8.263640 AGATTTAGACATGTAGATGTGCTCTTT 58.736 33.333 10.71 0.00 43.22 2.52
384 385 8.430801 AGACATGTAGATGTGCTCTTTTTATC 57.569 34.615 10.71 0.00 43.22 1.75
385 386 8.043113 AGACATGTAGATGTGCTCTTTTTATCA 58.957 33.333 10.71 0.00 43.22 2.15
386 387 7.978982 ACATGTAGATGTGCTCTTTTTATCAC 58.021 34.615 4.42 0.00 41.52 3.06
474 476 8.116753 CGAATCTTCGCATAAAAGAAGTAACAT 58.883 33.333 0.00 0.00 44.26 2.71
548 827 7.692908 AAACCGAATTTTGTAACACTTCATG 57.307 32.000 0.00 0.00 0.00 3.07
550 829 4.320690 CCGAATTTTGTAACACTTCATGCG 59.679 41.667 0.00 0.00 0.00 4.73
554 3509 3.913548 TTGTAACACTTCATGCGCAAT 57.086 38.095 17.11 0.00 0.00 3.56
570 3525 3.438360 CGCAATAAATCCAACCAAGCTC 58.562 45.455 0.00 0.00 0.00 4.09
591 3546 6.472686 CTCTGGTGGTTTAGTAGAGCTTAT 57.527 41.667 0.00 0.00 0.00 1.73
605 3560 2.360600 TTATGGCCGCCGTGCTTT 60.361 55.556 14.84 0.00 0.00 3.51
606 3561 1.078356 TTATGGCCGCCGTGCTTTA 60.078 52.632 14.84 0.00 0.00 1.85
608 3563 2.933878 TATGGCCGCCGTGCTTTAGG 62.934 60.000 14.84 0.00 0.00 2.69
613 3568 4.770874 GCCGTGCTTTAGGGGCGA 62.771 66.667 0.00 0.00 35.59 5.54
614 3569 2.046700 CCGTGCTTTAGGGGCGAA 60.047 61.111 0.00 0.00 0.00 4.70
616 3571 1.029947 CCGTGCTTTAGGGGCGAAAT 61.030 55.000 0.00 0.00 0.00 2.17
617 3572 0.098728 CGTGCTTTAGGGGCGAAATG 59.901 55.000 0.00 0.00 0.00 2.32
618 3573 1.459450 GTGCTTTAGGGGCGAAATGA 58.541 50.000 0.00 0.00 0.00 2.57
619 3574 1.816224 GTGCTTTAGGGGCGAAATGAA 59.184 47.619 0.00 0.00 0.00 2.57
620 3575 2.091541 TGCTTTAGGGGCGAAATGAAG 58.908 47.619 0.00 0.00 0.00 3.02
621 3576 1.405463 GCTTTAGGGGCGAAATGAAGG 59.595 52.381 0.00 0.00 0.00 3.46
622 3577 1.405463 CTTTAGGGGCGAAATGAAGGC 59.595 52.381 0.00 0.00 0.00 4.35
623 3578 0.746563 TTAGGGGCGAAATGAAGGCG 60.747 55.000 0.00 0.00 0.00 5.52
624 3579 1.906105 TAGGGGCGAAATGAAGGCGT 61.906 55.000 0.00 0.00 0.00 5.68
625 3580 1.450669 GGGGCGAAATGAAGGCGTA 60.451 57.895 0.00 0.00 0.00 4.42
626 3581 0.818040 GGGGCGAAATGAAGGCGTAT 60.818 55.000 0.00 0.00 0.00 3.06
627 3582 0.586802 GGGCGAAATGAAGGCGTATC 59.413 55.000 0.00 0.00 0.00 2.24
628 3583 1.583054 GGCGAAATGAAGGCGTATCT 58.417 50.000 0.00 0.00 0.00 1.98
629 3584 1.527311 GGCGAAATGAAGGCGTATCTC 59.473 52.381 0.00 0.00 0.00 2.75
637 3592 0.753262 AAGGCGTATCTCCTGCGAAT 59.247 50.000 0.00 0.00 34.56 3.34
649 3604 2.923854 GCGAATGCGATCTCGTGG 59.076 61.111 0.00 0.00 42.22 4.94
650 3605 2.923854 CGAATGCGATCTCGTGGC 59.076 61.111 1.14 0.00 42.22 5.01
651 3606 1.878069 CGAATGCGATCTCGTGGCA 60.878 57.895 1.14 0.00 45.88 4.92
652 3607 1.815212 CGAATGCGATCTCGTGGCAG 61.815 60.000 1.14 0.00 45.00 4.85
653 3608 2.098842 GAATGCGATCTCGTGGCAGC 62.099 60.000 1.14 0.00 45.00 5.25
656 3611 2.951745 CGATCTCGTGGCAGCGTC 60.952 66.667 8.80 0.78 34.11 5.19
657 3612 2.951745 GATCTCGTGGCAGCGTCG 60.952 66.667 8.80 2.06 0.00 5.12
670 3625 3.423154 CGTCGGGCAGCTCAAACC 61.423 66.667 0.00 0.00 0.00 3.27
854 3809 3.292159 GCCCGTCGCCACCTTTTT 61.292 61.111 0.00 0.00 0.00 1.94
875 3830 3.795623 TTATTAAGCTCGCTCCTCGTT 57.204 42.857 0.00 0.00 39.67 3.85
927 3882 1.204941 GCACCTCTGACCGAACATAGT 59.795 52.381 0.00 0.00 0.00 2.12
948 3911 0.969894 GTATAGCATCTCCCCACGCT 59.030 55.000 0.00 0.00 38.51 5.07
983 3952 8.470215 GCTACAGCATCAAGATCACTAGATCAC 61.470 44.444 0.00 0.00 45.62 3.06
1015 3984 2.028190 CTATGGCGTCCGAGCAGG 59.972 66.667 0.00 0.00 42.97 4.85
1227 4196 2.352032 GGCCCACGACAGCTACTCT 61.352 63.158 0.00 0.00 0.00 3.24
1258 4227 3.060000 GGACCGCGGGGGAAAAAG 61.060 66.667 31.76 0.00 39.97 2.27
1366 4401 1.906824 AAGGAGACCAAGGACGCGA 60.907 57.895 15.93 0.00 0.00 5.87
1396 4431 4.271816 CGAGGGAGATGGCGGACG 62.272 72.222 0.00 0.00 0.00 4.79
1506 4541 2.348998 AAGGACGCTGCCTTGGAG 59.651 61.111 6.20 0.00 46.25 3.86
1507 4542 2.217038 AAGGACGCTGCCTTGGAGA 61.217 57.895 6.20 0.00 46.25 3.71
1508 4543 2.435059 GGACGCTGCCTTGGAGAC 60.435 66.667 0.00 0.00 0.00 3.36
1509 4544 2.659610 GACGCTGCCTTGGAGACT 59.340 61.111 0.00 0.00 0.00 3.24
1630 4665 1.909302 AGGAGTACATGGTGGACAAGG 59.091 52.381 0.00 0.00 32.29 3.61
1675 4710 2.663188 GCTCGGCCAAGGATAGCG 60.663 66.667 2.24 0.00 0.00 4.26
1689 4724 1.787057 ATAGCGAGGGCGAGACGAAG 61.787 60.000 0.00 0.00 46.35 3.79
1834 4869 1.610624 GCCGTGGTTCAAGGATCAAGA 60.611 52.381 4.15 0.00 35.05 3.02
1849 4884 1.806542 TCAAGATGCGAAGGCTTCAAC 59.193 47.619 25.66 17.36 43.69 3.18
1872 4907 8.096869 AACAGTAAGTTGATTGAACGCGTCAA 62.097 38.462 14.44 18.61 44.04 3.18
1897 4932 4.385825 TGTTAAATCTGCAGGTCGAAGTT 58.614 39.130 15.13 1.85 0.00 2.66
2010 5045 1.682684 GCTGAGAGGAAGGGGACGA 60.683 63.158 0.00 0.00 0.00 4.20
2012 5047 0.612174 CTGAGAGGAAGGGGACGACA 60.612 60.000 0.00 0.00 0.00 4.35
2014 5049 0.533032 GAGAGGAAGGGGACGACAAG 59.467 60.000 0.00 0.00 0.00 3.16
2301 5350 2.281692 ACGCCTGAAGCATGCACA 60.282 55.556 21.98 17.77 44.04 4.57
2339 5394 3.776644 CGTTTTGTGTGACACTTTGTACG 59.223 43.478 17.47 14.17 35.11 3.67
2409 5464 2.031857 TGCTTAAACTTGGCGTAAACGG 60.032 45.455 4.49 0.00 40.23 4.44
2425 5485 5.574055 CGTAAACGGTTGATGCTAGAACTTA 59.426 40.000 0.00 0.00 35.37 2.24
2428 5488 5.339008 ACGGTTGATGCTAGAACTTATGA 57.661 39.130 0.00 0.00 0.00 2.15
2457 5517 6.490040 ACATTGAACTAGTGCAATAACTTGGT 59.510 34.615 25.67 16.44 33.68 3.67
2465 5526 4.404073 AGTGCAATAACTTGGTTTGGTTGA 59.596 37.500 0.00 0.00 32.72 3.18
2485 5546 3.131577 TGAGCAAATACGGTCCTAATCGT 59.868 43.478 0.00 0.00 42.55 3.73
2490 5551 5.464389 GCAAATACGGTCCTAATCGTGTATT 59.536 40.000 0.00 0.00 40.05 1.89
2505 5566 8.731275 AATCGTGTATTGATAGGAAATCAACA 57.269 30.769 2.72 0.00 40.37 3.33
2506 5567 8.731275 ATCGTGTATTGATAGGAAATCAACAA 57.269 30.769 2.72 0.00 40.37 2.83
2508 5570 7.822334 TCGTGTATTGATAGGAAATCAACAAGT 59.178 33.333 2.72 0.00 40.37 3.16
2510 5572 8.946085 GTGTATTGATAGGAAATCAACAAGTCA 58.054 33.333 2.72 0.00 40.37 3.41
2518 5580 3.880047 AATCAACAAGTCATGGCATGG 57.120 42.857 26.15 13.12 0.00 3.66
2563 5627 0.320421 GACTTGAAGCGTGTGGCCTA 60.320 55.000 3.32 0.00 45.17 3.93
2633 5700 3.334691 CCATGTTCACGTGGTAGATGTT 58.665 45.455 17.00 0.00 45.66 2.71
2634 5701 3.370978 CCATGTTCACGTGGTAGATGTTC 59.629 47.826 17.00 0.00 45.66 3.18
2689 5763 7.220108 GTGCTGACGTGAAAACTAAAAGAAAAT 59.780 33.333 0.00 0.00 0.00 1.82
2700 5776 8.812147 AAACTAAAAGAAAATTTTAGGCCTCG 57.188 30.769 9.68 0.00 42.96 4.63
2744 5820 1.116536 TAGGACGCACACCCTCACAA 61.117 55.000 0.00 0.00 34.11 3.33
2757 5833 0.667993 CTCACAACCACGGCAACATT 59.332 50.000 0.00 0.00 0.00 2.71
2773 5849 2.450476 ACATTTGCTCCCAGATGTTCC 58.550 47.619 0.00 0.00 42.25 3.62
2774 5850 1.753073 CATTTGCTCCCAGATGTTCCC 59.247 52.381 0.00 0.00 31.00 3.97
2797 5874 9.613428 TCCCAGATGTTCAATAAGTATAACAAG 57.387 33.333 0.00 0.00 35.63 3.16
2798 5875 9.396022 CCCAGATGTTCAATAAGTATAACAAGT 57.604 33.333 0.00 0.00 35.63 3.16
2803 5880 8.470040 TGTTCAATAAGTATAACAAGTCGTCC 57.530 34.615 0.00 0.00 0.00 4.79
2805 5882 9.148104 GTTCAATAAGTATAACAAGTCGTCCTT 57.852 33.333 0.00 0.00 0.00 3.36
2812 5889 9.798994 AAGTATAACAAGTCGTCCTTAATGTAG 57.201 33.333 0.00 0.00 0.00 2.74
2813 5890 8.964772 AGTATAACAAGTCGTCCTTAATGTAGT 58.035 33.333 0.00 0.00 0.00 2.73
2816 5893 6.830873 ACAAGTCGTCCTTAATGTAGTACT 57.169 37.500 0.00 0.00 0.00 2.73
2817 5894 6.850555 ACAAGTCGTCCTTAATGTAGTACTC 58.149 40.000 0.00 0.00 0.00 2.59
2818 5895 6.127786 ACAAGTCGTCCTTAATGTAGTACTCC 60.128 42.308 0.00 0.00 0.00 3.85
2819 5896 4.886489 AGTCGTCCTTAATGTAGTACTCCC 59.114 45.833 0.00 0.00 0.00 4.30
2820 5897 4.886489 GTCGTCCTTAATGTAGTACTCCCT 59.114 45.833 0.00 0.00 0.00 4.20
2821 5898 5.008514 GTCGTCCTTAATGTAGTACTCCCTC 59.991 48.000 0.00 0.00 0.00 4.30
2822 5899 4.277921 CGTCCTTAATGTAGTACTCCCTCC 59.722 50.000 0.00 0.00 0.00 4.30
2823 5900 4.277921 GTCCTTAATGTAGTACTCCCTCCG 59.722 50.000 0.00 0.00 0.00 4.63
2824 5901 4.079558 TCCTTAATGTAGTACTCCCTCCGT 60.080 45.833 0.00 0.00 0.00 4.69
2825 5902 4.648307 CCTTAATGTAGTACTCCCTCCGTT 59.352 45.833 0.00 0.00 0.00 4.44
2826 5903 5.221204 CCTTAATGTAGTACTCCCTCCGTTC 60.221 48.000 0.00 0.00 0.00 3.95
2827 5904 2.134789 TGTAGTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
2828 5905 1.355381 TGTAGTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
2829 5906 2.225091 TGTAGTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
2830 5907 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2831 5908 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2832 5909 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2833 5910 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2834 5911 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2835 5912 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2836 5913 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2837 5914 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2838 5915 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2839 5916 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2840 5917 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2841 5918 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2842 5919 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2843 5920 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2844 5921 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2845 5922 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2846 5923 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2847 5924 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2848 5925 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
2864 5941 9.991906 ACTCAACTTTATACTAACTTTAGCACA 57.008 29.630 0.00 0.00 34.09 4.57
2872 5949 5.767816 ACTAACTTTAGCACAAAGTTGGG 57.232 39.130 27.78 22.89 46.38 4.12
2873 5950 5.198207 ACTAACTTTAGCACAAAGTTGGGT 58.802 37.500 27.78 23.28 46.38 4.51
2874 5951 4.649088 AACTTTAGCACAAAGTTGGGTC 57.351 40.909 21.56 0.00 45.58 4.46
2875 5952 3.626930 ACTTTAGCACAAAGTTGGGTCA 58.373 40.909 9.88 0.00 37.18 4.02
2876 5953 4.215109 ACTTTAGCACAAAGTTGGGTCAT 58.785 39.130 9.88 0.00 37.18 3.06
2877 5954 4.278419 ACTTTAGCACAAAGTTGGGTCATC 59.722 41.667 9.88 0.00 37.18 2.92
2878 5955 2.664402 AGCACAAAGTTGGGTCATCT 57.336 45.000 0.00 0.00 33.05 2.90
2879 5956 3.788227 AGCACAAAGTTGGGTCATCTA 57.212 42.857 0.00 0.00 33.05 1.98
2880 5957 4.307032 AGCACAAAGTTGGGTCATCTAT 57.693 40.909 0.00 0.00 33.05 1.98
2881 5958 4.666512 AGCACAAAGTTGGGTCATCTATT 58.333 39.130 0.00 0.00 33.05 1.73
2882 5959 5.079643 AGCACAAAGTTGGGTCATCTATTT 58.920 37.500 0.00 0.00 33.05 1.40
2883 5960 5.539955 AGCACAAAGTTGGGTCATCTATTTT 59.460 36.000 0.00 0.00 33.05 1.82
2884 5961 5.634859 GCACAAAGTTGGGTCATCTATTTTG 59.365 40.000 0.00 0.00 33.05 2.44
2885 5962 6.516527 GCACAAAGTTGGGTCATCTATTTTGA 60.517 38.462 0.00 0.00 33.05 2.69
2886 5963 7.432869 CACAAAGTTGGGTCATCTATTTTGAA 58.567 34.615 0.00 0.00 0.00 2.69
2887 5964 7.925483 CACAAAGTTGGGTCATCTATTTTGAAA 59.075 33.333 0.00 0.00 0.00 2.69
2888 5965 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
2889 5966 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
2890 5967 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
2891 5968 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
2892 5969 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
2893 5970 5.183228 GGGTCATCTATTTTGAAACGGAGA 58.817 41.667 0.00 0.00 0.00 3.71
2894 5971 5.294552 GGGTCATCTATTTTGAAACGGAGAG 59.705 44.000 0.00 0.00 0.00 3.20
2910 5987 8.578448 AAACGGAGAGAGTATATAAGGGTATC 57.422 38.462 0.00 0.00 0.00 2.24
3147 6226 6.715344 TGTTTAGTAAATGCGGACACTTAG 57.285 37.500 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.385898 TCGGAATACTTTGCTCTTCTTTAAAA 57.614 30.769 0.00 0.00 0.00 1.52
2 3 6.594159 CCTCGGAATACTTTGCTCTTCTTTAA 59.406 38.462 0.00 0.00 0.00 1.52
3 4 6.070995 TCCTCGGAATACTTTGCTCTTCTTTA 60.071 38.462 0.00 0.00 0.00 1.85
9 10 3.680196 GCTTCCTCGGAATACTTTGCTCT 60.680 47.826 0.00 0.00 33.28 4.09
11 12 2.027192 TGCTTCCTCGGAATACTTTGCT 60.027 45.455 0.00 0.00 33.28 3.91
12 13 2.356135 TGCTTCCTCGGAATACTTTGC 58.644 47.619 0.00 0.00 33.28 3.68
13 14 4.695455 TCTTTGCTTCCTCGGAATACTTTG 59.305 41.667 0.00 0.00 33.28 2.77
15 16 4.553330 TCTTTGCTTCCTCGGAATACTT 57.447 40.909 0.00 0.00 33.28 2.24
20 21 3.750371 TGATTTCTTTGCTTCCTCGGAA 58.250 40.909 0.00 0.00 0.00 4.30
21 22 3.417069 TGATTTCTTTGCTTCCTCGGA 57.583 42.857 0.00 0.00 0.00 4.55
22 23 4.418392 CATTGATTTCTTTGCTTCCTCGG 58.582 43.478 0.00 0.00 0.00 4.63
24 25 4.463891 TCCCATTGATTTCTTTGCTTCCTC 59.536 41.667 0.00 0.00 0.00 3.71
25 26 4.419282 TCCCATTGATTTCTTTGCTTCCT 58.581 39.130 0.00 0.00 0.00 3.36
26 27 4.806640 TCCCATTGATTTCTTTGCTTCC 57.193 40.909 0.00 0.00 0.00 3.46
27 28 6.073058 GGTTTTCCCATTGATTTCTTTGCTTC 60.073 38.462 0.00 0.00 0.00 3.86
28 29 5.764686 GGTTTTCCCATTGATTTCTTTGCTT 59.235 36.000 0.00 0.00 0.00 3.91
29 30 5.163216 TGGTTTTCCCATTGATTTCTTTGCT 60.163 36.000 0.00 0.00 38.72 3.91
30 31 5.062528 TGGTTTTCCCATTGATTTCTTTGC 58.937 37.500 0.00 0.00 38.72 3.68
31 32 7.498570 TCTTTGGTTTTCCCATTGATTTCTTTG 59.501 33.333 0.00 0.00 44.74 2.77
32 33 7.572814 TCTTTGGTTTTCCCATTGATTTCTTT 58.427 30.769 0.00 0.00 44.74 2.52
34 35 6.745794 TCTTTGGTTTTCCCATTGATTTCT 57.254 33.333 0.00 0.00 44.74 2.52
36 37 8.586879 TTTTTCTTTGGTTTTCCCATTGATTT 57.413 26.923 0.00 0.00 44.74 2.17
85 86 3.120182 TCGTTCGTTCGTTTGCTTTTT 57.880 38.095 0.00 0.00 0.00 1.94
86 87 2.810028 TCGTTCGTTCGTTTGCTTTT 57.190 40.000 0.00 0.00 0.00 2.27
87 88 2.159680 TGTTCGTTCGTTCGTTTGCTTT 60.160 40.909 0.00 0.00 0.00 3.51
90 91 1.099120 GTGTTCGTTCGTTCGTTTGC 58.901 50.000 2.67 0.00 0.00 3.68
91 92 2.422773 TGTGTTCGTTCGTTCGTTTG 57.577 45.000 2.67 0.00 0.00 2.93
92 93 2.604011 TCATGTGTTCGTTCGTTCGTTT 59.396 40.909 0.00 0.00 0.00 3.60
95 96 1.460267 GCTCATGTGTTCGTTCGTTCG 60.460 52.381 0.00 0.00 0.00 3.95
96 97 1.460267 CGCTCATGTGTTCGTTCGTTC 60.460 52.381 0.00 0.00 0.00 3.95
99 100 0.781787 TTCGCTCATGTGTTCGTTCG 59.218 50.000 0.00 0.00 0.00 3.95
100 101 3.857665 TCTATTCGCTCATGTGTTCGTTC 59.142 43.478 0.00 0.00 0.00 3.95
101 102 3.612860 GTCTATTCGCTCATGTGTTCGTT 59.387 43.478 0.00 0.00 0.00 3.85
102 103 3.119459 AGTCTATTCGCTCATGTGTTCGT 60.119 43.478 0.00 0.00 0.00 3.85
103 104 3.241553 CAGTCTATTCGCTCATGTGTTCG 59.758 47.826 0.00 0.00 0.00 3.95
104 105 4.266502 GTCAGTCTATTCGCTCATGTGTTC 59.733 45.833 0.00 0.00 0.00 3.18
105 106 4.177026 GTCAGTCTATTCGCTCATGTGTT 58.823 43.478 0.00 0.00 0.00 3.32
107 108 2.786027 CGTCAGTCTATTCGCTCATGTG 59.214 50.000 0.00 0.00 0.00 3.21
109 110 2.223595 ACCGTCAGTCTATTCGCTCATG 60.224 50.000 0.00 0.00 0.00 3.07
112 113 1.595003 CGACCGTCAGTCTATTCGCTC 60.595 57.143 0.00 0.00 43.91 5.03
114 115 0.376152 TCGACCGTCAGTCTATTCGC 59.624 55.000 0.00 0.00 43.91 4.70
115 116 2.438583 GTTCGACCGTCAGTCTATTCG 58.561 52.381 0.00 0.00 43.91 3.34
116 117 2.438583 CGTTCGACCGTCAGTCTATTC 58.561 52.381 0.00 0.00 43.91 1.75
118 119 0.731417 CCGTTCGACCGTCAGTCTAT 59.269 55.000 0.61 0.00 43.91 1.98
119 120 0.320683 TCCGTTCGACCGTCAGTCTA 60.321 55.000 0.61 0.00 43.91 2.59
120 121 1.598962 TCCGTTCGACCGTCAGTCT 60.599 57.895 0.61 0.00 43.91 3.24
121 122 1.441682 GTCCGTTCGACCGTCAGTC 60.442 63.158 0.61 0.00 42.54 3.51
123 124 2.501222 CGTCCGTTCGACCGTCAG 60.501 66.667 0.61 0.00 38.36 3.51
124 125 2.958204 CTCGTCCGTTCGACCGTCA 61.958 63.158 0.61 0.00 38.36 4.35
127 128 1.059994 CTACTCGTCCGTTCGACCG 59.940 63.158 0.00 0.00 38.36 4.79
129 130 0.098376 ATGCTACTCGTCCGTTCGAC 59.902 55.000 0.00 0.00 38.21 4.20
131 132 0.179171 ACATGCTACTCGTCCGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
132 133 1.992170 AACATGCTACTCGTCCGTTC 58.008 50.000 0.00 0.00 0.00 3.95
133 134 3.795623 ATAACATGCTACTCGTCCGTT 57.204 42.857 0.00 0.00 0.00 4.44
134 135 3.129813 TCAATAACATGCTACTCGTCCGT 59.870 43.478 0.00 0.00 0.00 4.69
135 136 3.702330 TCAATAACATGCTACTCGTCCG 58.298 45.455 0.00 0.00 0.00 4.79
136 137 4.051922 CCTCAATAACATGCTACTCGTCC 58.948 47.826 0.00 0.00 0.00 4.79
137 138 3.491267 GCCTCAATAACATGCTACTCGTC 59.509 47.826 0.00 0.00 0.00 4.20
138 139 3.458189 GCCTCAATAACATGCTACTCGT 58.542 45.455 0.00 0.00 0.00 4.18
139 140 2.472861 CGCCTCAATAACATGCTACTCG 59.527 50.000 0.00 0.00 0.00 4.18
140 141 2.802816 CCGCCTCAATAACATGCTACTC 59.197 50.000 0.00 0.00 0.00 2.59
142 143 1.264288 GCCGCCTCAATAACATGCTAC 59.736 52.381 0.00 0.00 0.00 3.58
143 144 1.593196 GCCGCCTCAATAACATGCTA 58.407 50.000 0.00 0.00 0.00 3.49
144 145 1.103398 GGCCGCCTCAATAACATGCT 61.103 55.000 0.71 0.00 0.00 3.79
145 146 1.360192 GGCCGCCTCAATAACATGC 59.640 57.895 0.71 0.00 0.00 4.06
146 147 1.102154 TTGGCCGCCTCAATAACATG 58.898 50.000 11.61 0.00 0.00 3.21
147 148 2.071778 ATTGGCCGCCTCAATAACAT 57.928 45.000 11.61 0.00 33.57 2.71
149 150 2.032924 GTGTATTGGCCGCCTCAATAAC 59.967 50.000 11.61 5.37 38.37 1.89
150 151 2.294074 GTGTATTGGCCGCCTCAATAA 58.706 47.619 11.61 0.00 38.37 1.40
151 152 1.210722 TGTGTATTGGCCGCCTCAATA 59.789 47.619 11.61 4.55 36.40 1.90
152 153 0.034574 TGTGTATTGGCCGCCTCAAT 60.035 50.000 11.61 5.59 38.29 2.57
153 154 0.034574 ATGTGTATTGGCCGCCTCAA 60.035 50.000 11.61 0.00 0.00 3.02
154 155 0.747644 CATGTGTATTGGCCGCCTCA 60.748 55.000 11.61 2.24 0.00 3.86
155 156 2.024918 CATGTGTATTGGCCGCCTC 58.975 57.895 11.61 0.00 0.00 4.70
156 157 2.120909 GCATGTGTATTGGCCGCCT 61.121 57.895 11.61 0.00 0.00 5.52
157 158 2.412937 GCATGTGTATTGGCCGCC 59.587 61.111 1.04 1.04 0.00 6.13
158 159 2.024588 CGCATGTGTATTGGCCGC 59.975 61.111 0.00 0.00 0.00 6.53
159 160 2.024588 GCGCATGTGTATTGGCCG 59.975 61.111 0.30 0.00 0.00 6.13
174 175 1.535462 CTTAATCCTTTATGCGGGGCG 59.465 52.381 0.00 0.00 0.00 6.13
179 180 3.184581 GTCTCGCCTTAATCCTTTATGCG 59.815 47.826 0.00 0.00 38.90 4.73
201 202 7.913821 TCTGGCGTATAATTATACTAGCATTCG 59.086 37.037 25.74 15.13 37.10 3.34
202 203 9.021863 GTCTGGCGTATAATTATACTAGCATTC 57.978 37.037 25.74 14.28 37.10 2.67
203 204 8.528643 TGTCTGGCGTATAATTATACTAGCATT 58.471 33.333 25.74 0.00 37.10 3.56
213 214 7.699391 GCGAATACTATGTCTGGCGTATAATTA 59.301 37.037 0.00 0.00 0.00 1.40
216 217 5.396484 GCGAATACTATGTCTGGCGTATAA 58.604 41.667 0.00 0.00 0.00 0.98
217 218 4.436451 CGCGAATACTATGTCTGGCGTATA 60.436 45.833 0.00 0.00 37.82 1.47
221 222 1.053048 CGCGAATACTATGTCTGGCG 58.947 55.000 0.00 0.00 36.29 5.69
224 225 1.709203 GCGTCGCGAATACTATGTCTG 59.291 52.381 12.06 0.00 0.00 3.51
225 226 1.334779 GGCGTCGCGAATACTATGTCT 60.335 52.381 12.06 0.00 0.00 3.41
226 227 1.050767 GGCGTCGCGAATACTATGTC 58.949 55.000 12.06 0.00 0.00 3.06
239 240 3.103911 GTGAACGAGTGGGCGTCG 61.104 66.667 0.00 1.53 44.86 5.12
248 249 4.944962 TTATTCTGCATTGGTGAACGAG 57.055 40.909 0.00 0.00 0.00 4.18
249 250 4.699735 ACATTATTCTGCATTGGTGAACGA 59.300 37.500 0.00 0.00 0.00 3.85
279 280 2.028203 TGTGCACGGAGATTCATTCTGA 60.028 45.455 13.13 0.00 33.74 3.27
282 283 3.374988 TCAATGTGCACGGAGATTCATTC 59.625 43.478 13.13 0.00 0.00 2.67
284 285 2.989909 TCAATGTGCACGGAGATTCAT 58.010 42.857 13.13 0.00 0.00 2.57
285 286 2.470983 TCAATGTGCACGGAGATTCA 57.529 45.000 13.13 0.00 0.00 2.57
294 295 5.518812 TGTAACACTTGAATCAATGTGCAC 58.481 37.500 10.75 10.75 31.11 4.57
310 311 6.964934 ACAAAGTCTCGTCAATTTTGTAACAC 59.035 34.615 0.00 0.00 39.43 3.32
312 313 7.964545 AACAAAGTCTCGTCAATTTTGTAAC 57.035 32.000 1.86 0.00 40.07 2.50
350 351 9.190858 GAGCACATCTACATGTCTAAATCTTAG 57.809 37.037 0.00 0.00 41.69 2.18
352 353 7.790027 AGAGCACATCTACATGTCTAAATCTT 58.210 34.615 0.00 0.00 41.69 2.40
358 359 9.534565 GATAAAAAGAGCACATCTACATGTCTA 57.465 33.333 0.00 0.00 41.69 2.59
526 805 5.219633 GCATGAAGTGTTACAAAATTCGGT 58.780 37.500 0.00 0.00 0.00 4.69
533 812 3.699779 TTGCGCATGAAGTGTTACAAA 57.300 38.095 12.75 0.00 0.00 2.83
535 814 5.363979 TTTATTGCGCATGAAGTGTTACA 57.636 34.783 12.75 0.00 0.00 2.41
548 827 1.926510 GCTTGGTTGGATTTATTGCGC 59.073 47.619 0.00 0.00 0.00 6.09
550 829 4.427312 CAGAGCTTGGTTGGATTTATTGC 58.573 43.478 0.00 0.00 0.00 3.56
570 3525 5.360591 CCATAAGCTCTACTAAACCACCAG 58.639 45.833 0.00 0.00 0.00 4.00
605 3560 1.153249 CGCCTTCATTTCGCCCCTA 60.153 57.895 0.00 0.00 0.00 3.53
606 3561 1.906105 TACGCCTTCATTTCGCCCCT 61.906 55.000 0.00 0.00 0.00 4.79
608 3563 0.586802 GATACGCCTTCATTTCGCCC 59.413 55.000 0.00 0.00 0.00 6.13
609 3564 1.527311 GAGATACGCCTTCATTTCGCC 59.473 52.381 0.00 0.00 0.00 5.54
611 3566 2.797156 CAGGAGATACGCCTTCATTTCG 59.203 50.000 0.00 0.00 29.38 3.46
612 3567 2.545946 GCAGGAGATACGCCTTCATTTC 59.454 50.000 0.00 0.00 29.38 2.17
613 3568 2.565841 GCAGGAGATACGCCTTCATTT 58.434 47.619 0.00 0.00 29.38 2.32
614 3569 1.539065 CGCAGGAGATACGCCTTCATT 60.539 52.381 0.00 0.00 29.38 2.57
616 3571 1.035385 TCGCAGGAGATACGCCTTCA 61.035 55.000 0.00 0.00 29.38 3.02
617 3572 0.102481 TTCGCAGGAGATACGCCTTC 59.898 55.000 0.00 0.00 29.38 3.46
618 3573 0.753262 ATTCGCAGGAGATACGCCTT 59.247 50.000 0.00 0.00 29.38 4.35
619 3574 0.032678 CATTCGCAGGAGATACGCCT 59.967 55.000 0.00 0.00 32.88 5.52
620 3575 1.560860 GCATTCGCAGGAGATACGCC 61.561 60.000 0.00 0.00 38.36 5.68
621 3576 1.856012 GCATTCGCAGGAGATACGC 59.144 57.895 0.00 0.00 38.36 4.42
622 3577 0.317854 TCGCATTCGCAGGAGATACG 60.318 55.000 0.00 0.00 38.40 3.06
623 3578 1.989165 GATCGCATTCGCAGGAGATAC 59.011 52.381 0.00 0.00 38.40 2.24
624 3579 1.889170 AGATCGCATTCGCAGGAGATA 59.111 47.619 0.00 0.00 38.40 1.98
625 3580 0.678395 AGATCGCATTCGCAGGAGAT 59.322 50.000 0.00 0.00 38.40 2.75
626 3581 0.031314 GAGATCGCATTCGCAGGAGA 59.969 55.000 0.00 0.00 38.40 3.71
627 3582 1.274126 CGAGATCGCATTCGCAGGAG 61.274 60.000 0.00 0.00 38.40 3.69
628 3583 1.299392 CGAGATCGCATTCGCAGGA 60.299 57.895 0.00 0.00 38.40 3.86
629 3584 1.589993 ACGAGATCGCATTCGCAGG 60.590 57.895 1.39 0.00 44.43 4.85
651 3606 4.314440 TTTGAGCTGCCCGACGCT 62.314 61.111 0.00 0.00 39.61 5.07
652 3607 4.090057 GTTTGAGCTGCCCGACGC 62.090 66.667 0.00 0.00 38.31 5.19
653 3608 3.423154 GGTTTGAGCTGCCCGACG 61.423 66.667 0.00 0.00 0.00 5.12
654 3609 1.856265 CTTGGTTTGAGCTGCCCGAC 61.856 60.000 0.00 0.00 0.00 4.79
655 3610 1.600636 CTTGGTTTGAGCTGCCCGA 60.601 57.895 0.00 0.00 0.00 5.14
656 3611 1.455383 AACTTGGTTTGAGCTGCCCG 61.455 55.000 0.00 0.00 0.00 6.13
657 3612 0.752658 AAACTTGGTTTGAGCTGCCC 59.247 50.000 0.00 0.00 34.23 5.36
670 3625 3.934579 GCATGCCAAAAGGGATAAACTTG 59.065 43.478 6.36 0.00 40.01 3.16
709 3664 2.725203 TTCGTGGCCTTCTCGGTTGG 62.725 60.000 3.32 0.00 33.67 3.77
854 3809 3.795623 ACGAGGAGCGAGCTTAATAAA 57.204 42.857 0.00 0.00 44.57 1.40
858 3813 0.601558 ACAACGAGGAGCGAGCTTAA 59.398 50.000 0.00 0.00 44.57 1.85
859 3814 0.109272 CACAACGAGGAGCGAGCTTA 60.109 55.000 0.00 0.00 44.57 3.09
860 3815 1.373497 CACAACGAGGAGCGAGCTT 60.373 57.895 0.00 0.00 44.57 3.74
870 3825 1.423395 GAGTGGAGAAGCACAACGAG 58.577 55.000 0.00 0.00 0.00 4.18
871 3826 0.318699 CGAGTGGAGAAGCACAACGA 60.319 55.000 0.00 0.00 0.00 3.85
875 3830 3.137687 TGCGAGTGGAGAAGCACA 58.862 55.556 0.00 0.00 34.39 4.57
927 3882 2.168496 GCGTGGGGAGATGCTATACTA 58.832 52.381 0.00 0.00 0.00 1.82
948 3911 1.347378 TGATGCTGTAGCTGTGGTGAA 59.653 47.619 5.38 0.00 42.66 3.18
1222 4191 2.495409 CCATGGCGCCGGTAGAGTA 61.495 63.158 23.90 0.49 0.00 2.59
1254 4223 3.008049 AGCTCCCGTACTCATTGACTTTT 59.992 43.478 0.00 0.00 0.00 2.27
1258 4227 2.541178 CGTAGCTCCCGTACTCATTGAC 60.541 54.545 0.00 0.00 0.00 3.18
1366 4401 1.977544 CCCTCGTCTTCTCCACCGT 60.978 63.158 0.00 0.00 0.00 4.83
1405 4440 2.553247 CCTTGGTCTCTTTGGTCTTCCC 60.553 54.545 0.00 0.00 0.00 3.97
1406 4441 2.372172 TCCTTGGTCTCTTTGGTCTTCC 59.628 50.000 0.00 0.00 0.00 3.46
1411 4446 0.250338 GCGTCCTTGGTCTCTTTGGT 60.250 55.000 0.00 0.00 0.00 3.67
1414 4449 1.004918 CCGCGTCCTTGGTCTCTTT 60.005 57.895 4.92 0.00 0.00 2.52
1415 4450 2.657237 CCGCGTCCTTGGTCTCTT 59.343 61.111 4.92 0.00 0.00 2.85
1416 4451 4.070552 GCCGCGTCCTTGGTCTCT 62.071 66.667 4.92 0.00 0.00 3.10
1489 4524 2.217038 TCTCCAAGGCAGCGTCCTT 61.217 57.895 6.70 6.70 46.86 3.36
1490 4525 2.604686 TCTCCAAGGCAGCGTCCT 60.605 61.111 0.00 0.00 38.31 3.85
1491 4526 1.605058 TAGTCTCCAAGGCAGCGTCC 61.605 60.000 0.00 0.00 0.00 4.79
1492 4527 0.246635 TTAGTCTCCAAGGCAGCGTC 59.753 55.000 0.00 0.00 0.00 5.19
1493 4528 0.247736 CTTAGTCTCCAAGGCAGCGT 59.752 55.000 0.00 0.00 0.00 5.07
1494 4529 0.460987 CCTTAGTCTCCAAGGCAGCG 60.461 60.000 0.00 0.00 36.41 5.18
1495 4530 0.905357 TCCTTAGTCTCCAAGGCAGC 59.095 55.000 0.00 0.00 42.04 5.25
1496 4531 1.134965 CGTCCTTAGTCTCCAAGGCAG 60.135 57.143 0.00 0.00 42.04 4.85
1497 4532 0.895530 CGTCCTTAGTCTCCAAGGCA 59.104 55.000 0.00 0.00 42.04 4.75
1498 4533 0.460459 GCGTCCTTAGTCTCCAAGGC 60.460 60.000 0.00 0.00 42.04 4.35
1499 4534 0.179134 CGCGTCCTTAGTCTCCAAGG 60.179 60.000 0.00 0.00 43.40 3.61
1500 4535 0.179134 CCGCGTCCTTAGTCTCCAAG 60.179 60.000 4.92 0.00 0.00 3.61
1501 4536 1.888018 CCGCGTCCTTAGTCTCCAA 59.112 57.895 4.92 0.00 0.00 3.53
1502 4537 2.707849 GCCGCGTCCTTAGTCTCCA 61.708 63.158 4.92 0.00 0.00 3.86
1503 4538 2.104530 GCCGCGTCCTTAGTCTCC 59.895 66.667 4.92 0.00 0.00 3.71
1504 4539 2.278013 CGCCGCGTCCTTAGTCTC 60.278 66.667 4.92 0.00 0.00 3.36
1505 4540 3.823330 CCGCCGCGTCCTTAGTCT 61.823 66.667 12.58 0.00 0.00 3.24
1585 4620 0.981277 CCCTCCCCTGTATCAACGGT 60.981 60.000 0.00 0.00 0.00 4.83
1588 4623 1.146263 CGCCCTCCCCTGTATCAAC 59.854 63.158 0.00 0.00 0.00 3.18
1590 4625 3.161450 GCGCCCTCCCCTGTATCA 61.161 66.667 0.00 0.00 0.00 2.15
1675 4710 1.995646 GACTCCTTCGTCTCGCCCTC 61.996 65.000 0.00 0.00 0.00 4.30
1689 4724 4.980805 TGTTGCCACGCCGACTCC 62.981 66.667 0.00 0.00 0.00 3.85
1773 4808 0.708802 TTTACCTCTCCTCCTCCGGT 59.291 55.000 0.00 0.00 0.00 5.28
1827 4862 2.283298 TGAAGCCTTCGCATCTTGATC 58.717 47.619 0.00 0.00 37.52 2.92
1834 4869 2.472695 TACTGTTGAAGCCTTCGCAT 57.527 45.000 0.00 0.00 37.52 4.73
1849 4884 3.183574 TGACGCGTTCAATCAACTTACTG 59.816 43.478 15.53 0.00 32.09 2.74
1872 4907 4.471904 TCGACCTGCAGATTTAACAGAT 57.528 40.909 17.39 0.00 33.10 2.90
1879 4914 2.154462 CCAACTTCGACCTGCAGATTT 58.846 47.619 17.39 0.00 0.00 2.17
1897 4932 1.808411 GAAGATGTTCTCCGTTGCCA 58.192 50.000 0.00 0.00 0.00 4.92
2267 5302 3.399181 TCCTTCCGCGCCCTCAAT 61.399 61.111 0.00 0.00 0.00 2.57
2292 5327 2.911484 CGCAACAGGTGTGCATGCT 61.911 57.895 20.33 0.00 37.57 3.79
2301 5350 2.967076 CGCTCACACGCAACAGGT 60.967 61.111 0.00 0.00 0.00 4.00
2393 5448 2.015587 TCAACCGTTTACGCCAAGTTT 58.984 42.857 0.00 0.00 38.18 2.66
2409 5464 8.648557 TGTATGTCATAAGTTCTAGCATCAAC 57.351 34.615 0.00 0.00 0.00 3.18
2425 5485 7.870509 ATTGCACTAGTTCAATGTATGTCAT 57.129 32.000 18.25 0.00 38.57 3.06
2428 5488 8.792830 AGTTATTGCACTAGTTCAATGTATGT 57.207 30.769 25.16 6.53 34.95 2.29
2457 5517 2.554893 GGACCGTATTTGCTCAACCAAA 59.445 45.455 0.00 0.00 38.87 3.28
2465 5526 3.118884 ACACGATTAGGACCGTATTTGCT 60.119 43.478 0.00 0.00 37.23 3.91
2485 5546 9.685276 ATGACTTGTTGATTTCCTATCAATACA 57.315 29.630 3.77 0.00 39.80 2.29
2490 5551 5.357878 GCCATGACTTGTTGATTTCCTATCA 59.642 40.000 0.00 0.00 0.00 2.15
2505 5566 2.412323 CGCTGCCATGCCATGACTT 61.412 57.895 6.18 0.00 0.00 3.01
2506 5567 2.827190 CGCTGCCATGCCATGACT 60.827 61.111 6.18 0.00 0.00 3.41
2508 5570 3.135457 CACGCTGCCATGCCATGA 61.135 61.111 6.18 0.00 0.00 3.07
2700 5776 0.865769 AGTTGGCGTGTTCGAATGTC 59.134 50.000 0.00 0.00 39.71 3.06
2757 5833 0.329261 CTGGGAACATCTGGGAGCAA 59.671 55.000 0.00 0.00 41.51 3.91
2765 5841 6.725364 ACTTATTGAACATCTGGGAACATCT 58.275 36.000 0.00 0.00 41.51 2.90
2766 5842 8.682936 ATACTTATTGAACATCTGGGAACATC 57.317 34.615 0.00 0.00 41.51 3.06
2768 5844 9.391006 GTTATACTTATTGAACATCTGGGAACA 57.609 33.333 0.00 0.00 39.59 3.18
2769 5845 9.391006 TGTTATACTTATTGAACATCTGGGAAC 57.609 33.333 0.00 0.00 0.00 3.62
2770 5846 9.967451 TTGTTATACTTATTGAACATCTGGGAA 57.033 29.630 0.00 0.00 32.19 3.97
2771 5847 9.613428 CTTGTTATACTTATTGAACATCTGGGA 57.387 33.333 0.00 0.00 32.19 4.37
2772 5848 9.396022 ACTTGTTATACTTATTGAACATCTGGG 57.604 33.333 0.00 0.00 32.19 4.45
2797 5874 4.886489 AGGGAGTACTACATTAAGGACGAC 59.114 45.833 7.57 0.00 35.30 4.34
2798 5875 5.121380 AGGGAGTACTACATTAAGGACGA 57.879 43.478 7.57 0.00 35.30 4.20
2799 5876 4.277921 GGAGGGAGTACTACATTAAGGACG 59.722 50.000 7.57 0.00 35.30 4.79
2802 5879 4.213513 ACGGAGGGAGTACTACATTAAGG 58.786 47.826 7.57 0.00 0.00 2.69
2803 5880 5.221204 GGAACGGAGGGAGTACTACATTAAG 60.221 48.000 7.57 0.00 0.00 1.85
2805 5882 4.210331 GGAACGGAGGGAGTACTACATTA 58.790 47.826 7.57 0.00 0.00 1.90
2806 5883 3.029570 GGAACGGAGGGAGTACTACATT 58.970 50.000 7.57 0.00 0.00 2.71
2807 5884 2.024655 TGGAACGGAGGGAGTACTACAT 60.025 50.000 7.57 0.00 0.00 2.29
2808 5885 1.355381 TGGAACGGAGGGAGTACTACA 59.645 52.381 7.57 0.00 0.00 2.74
2809 5886 2.134789 TGGAACGGAGGGAGTACTAC 57.865 55.000 0.00 0.00 0.00 2.73
2810 5887 2.905415 TTGGAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
2811 5888 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
2812 5889 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2813 5890 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2814 5891 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2815 5892 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2816 5893 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2817 5894 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2818 5895 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2819 5896 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2820 5897 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2821 5898 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2822 5899 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2838 5915 9.991906 TGTGCTAAAGTTAGTATAAAGTTGAGT 57.008 29.630 0.32 0.00 33.32 3.41
2846 5923 9.005777 CCCAACTTTGTGCTAAAGTTAGTATAA 57.994 33.333 22.85 0.00 45.57 0.98
2847 5924 8.158789 ACCCAACTTTGTGCTAAAGTTAGTATA 58.841 33.333 22.85 0.00 45.57 1.47
2848 5925 7.002276 ACCCAACTTTGTGCTAAAGTTAGTAT 58.998 34.615 22.85 12.10 45.57 2.12
2849 5926 6.358991 ACCCAACTTTGTGCTAAAGTTAGTA 58.641 36.000 22.85 0.00 45.57 1.82
2850 5927 5.198207 ACCCAACTTTGTGCTAAAGTTAGT 58.802 37.500 22.85 20.32 45.57 2.24
2851 5928 5.298276 TGACCCAACTTTGTGCTAAAGTTAG 59.702 40.000 22.85 19.90 45.57 2.34
2852 5929 5.194432 TGACCCAACTTTGTGCTAAAGTTA 58.806 37.500 22.85 11.20 45.57 2.24
2854 5931 3.626930 TGACCCAACTTTGTGCTAAAGT 58.373 40.909 12.07 12.07 41.82 2.66
2855 5932 4.520492 AGATGACCCAACTTTGTGCTAAAG 59.480 41.667 11.01 11.01 0.00 1.85
2856 5933 4.469657 AGATGACCCAACTTTGTGCTAAA 58.530 39.130 0.00 0.00 0.00 1.85
2857 5934 4.098914 AGATGACCCAACTTTGTGCTAA 57.901 40.909 0.00 0.00 0.00 3.09
2858 5935 3.788227 AGATGACCCAACTTTGTGCTA 57.212 42.857 0.00 0.00 0.00 3.49
2859 5936 2.664402 AGATGACCCAACTTTGTGCT 57.336 45.000 0.00 0.00 0.00 4.40
2860 5937 5.391312 AAATAGATGACCCAACTTTGTGC 57.609 39.130 0.00 0.00 0.00 4.57
2861 5938 6.980593 TCAAAATAGATGACCCAACTTTGTG 58.019 36.000 0.00 0.00 0.00 3.33
2862 5939 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
2863 5940 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
2864 5941 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
2865 5942 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
2866 5943 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
2867 5944 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
2868 5945 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
2869 5946 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
2870 5947 5.183228 TCTCCGTTTCAAAATAGATGACCC 58.817 41.667 0.00 0.00 0.00 4.46
2871 5948 6.106673 TCTCTCCGTTTCAAAATAGATGACC 58.893 40.000 0.00 0.00 0.00 4.02
2872 5949 6.814146 ACTCTCTCCGTTTCAAAATAGATGAC 59.186 38.462 0.00 0.00 0.00 3.06
2873 5950 6.936279 ACTCTCTCCGTTTCAAAATAGATGA 58.064 36.000 0.00 0.00 0.00 2.92
2874 5951 8.879342 ATACTCTCTCCGTTTCAAAATAGATG 57.121 34.615 0.00 0.00 0.00 2.90
2879 5956 9.765795 CCTTATATACTCTCTCCGTTTCAAAAT 57.234 33.333 0.00 0.00 0.00 1.82
2880 5957 8.202137 CCCTTATATACTCTCTCCGTTTCAAAA 58.798 37.037 0.00 0.00 0.00 2.44
2881 5958 7.343833 ACCCTTATATACTCTCTCCGTTTCAAA 59.656 37.037 0.00 0.00 0.00 2.69
2882 5959 6.837568 ACCCTTATATACTCTCTCCGTTTCAA 59.162 38.462 0.00 0.00 0.00 2.69
2883 5960 6.371278 ACCCTTATATACTCTCTCCGTTTCA 58.629 40.000 0.00 0.00 0.00 2.69
2884 5961 6.897706 ACCCTTATATACTCTCTCCGTTTC 57.102 41.667 0.00 0.00 0.00 2.78
2885 5962 8.392479 AGATACCCTTATATACTCTCTCCGTTT 58.608 37.037 0.00 0.00 0.00 3.60
2886 5963 7.830201 CAGATACCCTTATATACTCTCTCCGTT 59.170 40.741 0.00 0.00 0.00 4.44
2887 5964 7.340256 CAGATACCCTTATATACTCTCTCCGT 58.660 42.308 0.00 0.00 0.00 4.69
2888 5965 6.768861 CCAGATACCCTTATATACTCTCTCCG 59.231 46.154 0.00 0.00 0.00 4.63
2889 5966 7.874252 TCCAGATACCCTTATATACTCTCTCC 58.126 42.308 0.00 0.00 0.00 3.71
2890 5967 9.756571 TTTCCAGATACCCTTATATACTCTCTC 57.243 37.037 0.00 0.00 0.00 3.20
2931 6008 2.573369 AGCTCCACATGCATCATCTTC 58.427 47.619 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.