Multiple sequence alignment - TraesCS3A01G186700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G186700 chr3A 100.000 5078 0 0 3439 8516 221926187 221931264 0.000000e+00 9378.0
1 TraesCS3A01G186700 chr3A 100.000 3188 0 0 1 3188 221922749 221925936 0.000000e+00 5888.0
2 TraesCS3A01G186700 chr3B 93.704 2462 99 26 6075 8499 257242235 257244677 0.000000e+00 3637.0
3 TraesCS3A01G186700 chr3B 94.444 2052 89 10 531 2581 257240205 257242232 0.000000e+00 3134.0
4 TraesCS3A01G186700 chr3D 94.163 2073 96 13 516 2584 179163804 179165855 0.000000e+00 3134.0
5 TraesCS3A01G186700 chr3D 95.000 1600 66 7 6075 7670 179165855 179167444 0.000000e+00 2499.0
6 TraesCS3A01G186700 chr3D 94.019 836 29 9 7672 8503 179167487 179168305 0.000000e+00 1247.0
7 TraesCS3A01G186700 chr3D 94.888 802 28 5 3797 4594 380273850 380273058 0.000000e+00 1242.0
8 TraesCS3A01G186700 chr3D 94.104 424 25 0 5046 5469 380271799 380271376 0.000000e+00 645.0
9 TraesCS3A01G186700 chr3D 93.750 176 11 0 2601 2776 380274026 380273851 1.820000e-66 265.0
10 TraesCS3A01G186700 chr3D 87.554 233 21 5 2776 3000 582021181 582020949 6.560000e-66 263.0
11 TraesCS3A01G186700 chr3D 93.333 135 8 1 4816 4950 380272161 380272028 1.880000e-46 198.0
12 TraesCS3A01G186700 chr3D 86.620 142 11 1 5372 5513 380271401 380271268 5.330000e-32 150.0
13 TraesCS3A01G186700 chr3D 93.023 86 6 0 4944 5029 380271869 380271784 8.970000e-25 126.0
14 TraesCS3A01G186700 chr5A 98.524 1558 13 4 3444 4995 606198473 606196920 0.000000e+00 2741.0
15 TraesCS3A01G186700 chr5A 96.059 1091 26 4 4989 6077 606195744 606194669 0.000000e+00 1760.0
16 TraesCS3A01G186700 chr5A 97.462 591 11 3 2584 3172 606199054 606198466 0.000000e+00 1005.0
17 TraesCS3A01G186700 chr5A 93.686 491 20 3 1 490 404192453 404191973 0.000000e+00 725.0
18 TraesCS3A01G186700 chr6A 97.563 1149 25 3 4929 6077 596655443 596656588 0.000000e+00 1964.0
19 TraesCS3A01G186700 chr6A 96.400 1139 33 4 3444 4578 44871131 44872265 0.000000e+00 1869.0
20 TraesCS3A01G186700 chr6A 96.316 1140 31 7 3444 4578 44888554 44889687 0.000000e+00 1862.0
21 TraesCS3A01G186700 chr6A 99.252 936 5 2 4002 4937 596651545 596652478 0.000000e+00 1688.0
22 TraesCS3A01G186700 chr6A 98.825 936 9 2 4002 4937 596683365 596684298 0.000000e+00 1666.0
23 TraesCS3A01G186700 chr6A 93.003 1129 62 6 4957 6076 44890952 44892072 0.000000e+00 1631.0
24 TraesCS3A01G186700 chr6A 98.396 561 9 0 3444 4004 596636340 596636900 0.000000e+00 987.0
25 TraesCS3A01G186700 chr6A 98.674 377 5 0 2644 3020 596635586 596635962 0.000000e+00 669.0
26 TraesCS3A01G186700 chr6A 97.208 394 7 2 4575 4965 44872559 44872951 0.000000e+00 664.0
27 TraesCS3A01G186700 chr6A 97.727 308 6 1 4575 4882 44889981 44890287 5.850000e-146 529.0
28 TraesCS3A01G186700 chr6A 96.441 281 8 1 2800 3080 44870728 44871006 6.020000e-126 462.0
29 TraesCS3A01G186700 chr6A 93.993 283 14 3 2800 3080 44887851 44888132 7.900000e-115 425.0
30 TraesCS3A01G186700 chr6A 95.946 222 8 1 2578 2798 44887571 44887792 8.130000e-95 359.0
31 TraesCS3A01G186700 chr6A 93.981 216 10 1 2580 2795 44870452 44870664 2.960000e-84 324.0
32 TraesCS3A01G186700 chr6A 92.105 228 17 1 5850 6076 44873488 44873715 3.840000e-83 320.0
33 TraesCS3A01G186700 chr6A 96.667 150 4 1 4929 5078 596687265 596687413 1.840000e-61 248.0
34 TraesCS3A01G186700 chr6A 94.737 114 6 0 3059 3172 44871025 44871138 2.440000e-40 178.0
35 TraesCS3A01G186700 chr6A 98.851 87 1 0 3086 3172 44888475 44888561 1.140000e-33 156.0
36 TraesCS3A01G186700 chr6A 95.455 88 4 0 3085 3172 596636260 596636347 3.200000e-29 141.0
37 TraesCS3A01G186700 chr6A 98.551 69 1 0 2583 2651 596634785 596634853 1.160000e-23 122.0
38 TraesCS3A01G186700 chrUn 96.400 1139 33 4 3444 4578 71650781 71649647 0.000000e+00 1869.0
39 TraesCS3A01G186700 chrUn 93.214 1120 56 9 4960 6069 71648315 71647206 0.000000e+00 1629.0
40 TraesCS3A01G186700 chrUn 97.208 394 7 2 4575 4965 71649353 71648961 0.000000e+00 664.0
41 TraesCS3A01G186700 chrUn 96.042 379 8 5 2800 3172 71651151 71650774 2.030000e-170 610.0
42 TraesCS3A01G186700 chrUn 97.908 239 5 0 2800 3038 380339097 380339335 1.710000e-111 414.0
43 TraesCS3A01G186700 chrUn 95.890 219 9 0 2580 2798 71651430 71651212 1.050000e-93 355.0
44 TraesCS3A01G186700 chrUn 95.890 219 9 0 2580 2798 380338818 380339036 1.050000e-93 355.0
45 TraesCS3A01G186700 chr7B 94.187 1101 51 9 3759 4853 746347183 746346090 0.000000e+00 1666.0
46 TraesCS3A01G186700 chr7B 87.392 928 65 22 4944 5850 746337292 746336396 0.000000e+00 1018.0
47 TraesCS3A01G186700 chr7B 95.556 90 3 1 4859 4948 746337459 746337371 8.910000e-30 143.0
48 TraesCS3A01G186700 chr7B 95.312 64 3 0 4966 5029 746337222 746337159 1.510000e-17 102.0
49 TraesCS3A01G186700 chr1B 94.603 982 44 5 3618 4594 202683891 202682914 0.000000e+00 1511.0
50 TraesCS3A01G186700 chr1B 88.015 534 48 7 5372 5905 202679512 202678995 1.210000e-172 617.0
51 TraesCS3A01G186700 chr1B 88.218 348 16 12 2677 3015 202684595 202684264 8.010000e-105 392.0
52 TraesCS3A01G186700 chr1B 92.982 228 16 0 5242 5469 202679714 202679487 4.930000e-87 333.0
53 TraesCS3A01G186700 chr1B 91.139 237 18 1 4794 5027 202682022 202681786 1.380000e-82 318.0
54 TraesCS3A01G186700 chr1B 93.627 204 13 0 5046 5249 202681799 202681596 1.070000e-78 305.0
55 TraesCS3A01G186700 chr1B 86.087 230 23 4 2779 2999 683517739 683517510 1.100000e-58 239.0
56 TraesCS3A01G186700 chr1B 90.972 144 12 1 3444 3587 202684029 202683887 8.720000e-45 193.0
57 TraesCS3A01G186700 chr6D 81.779 1147 117 46 3910 5027 291680408 291679325 0.000000e+00 876.0
58 TraesCS3A01G186700 chr1A 93.224 487 21 4 1 485 498055882 498055406 0.000000e+00 706.0
59 TraesCS3A01G186700 chr1A 90.576 191 15 2 2804 2991 68457015 68456825 5.100000e-62 250.0
60 TraesCS3A01G186700 chr1A 89.286 168 15 3 5913 6078 410531539 410531373 3.120000e-49 207.0
61 TraesCS3A01G186700 chr7A 91.477 176 11 4 5904 6077 676289099 676288926 1.100000e-58 239.0
62 TraesCS3A01G186700 chr2A 92.025 163 10 3 5907 6067 22595538 22595377 8.600000e-55 226.0
63 TraesCS3A01G186700 chr4D 89.714 175 11 5 5904 6076 215180383 215180552 5.180000e-52 217.0
64 TraesCS3A01G186700 chr4B 81.579 190 32 3 273 461 67083958 67083771 4.120000e-33 154.0
65 TraesCS3A01G186700 chr4B 97.222 36 1 0 2582 2617 226126371 226126406 2.570000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G186700 chr3A 221922749 221931264 8515 False 7633.000000 9378 100.000000 1 8516 2 chr3A.!!$F1 8515
1 TraesCS3A01G186700 chr3B 257240205 257244677 4472 False 3385.500000 3637 94.074000 531 8499 2 chr3B.!!$F1 7968
2 TraesCS3A01G186700 chr3D 179163804 179168305 4501 False 2293.333333 3134 94.394000 516 8503 3 chr3D.!!$F1 7987
3 TraesCS3A01G186700 chr3D 380271268 380274026 2758 True 437.666667 1242 92.619667 2601 5513 6 chr3D.!!$R2 2912
4 TraesCS3A01G186700 chr5A 606194669 606199054 4385 True 1835.333333 2741 97.348333 2584 6077 3 chr5A.!!$R2 3493
5 TraesCS3A01G186700 chr6A 596651545 596656588 5043 False 1826.000000 1964 98.407500 4002 6077 2 chr6A.!!$F4 2075
6 TraesCS3A01G186700 chr6A 596683365 596687413 4048 False 957.000000 1666 97.746000 4002 5078 2 chr6A.!!$F5 1076
7 TraesCS3A01G186700 chr6A 44887571 44892072 4501 False 827.000000 1862 95.972667 2578 6076 6 chr6A.!!$F2 3498
8 TraesCS3A01G186700 chr6A 44870452 44873715 3263 False 636.166667 1869 95.145333 2580 6076 6 chr6A.!!$F1 3496
9 TraesCS3A01G186700 chr6A 596634785 596636900 2115 False 479.750000 987 97.769000 2583 4004 4 chr6A.!!$F3 1421
10 TraesCS3A01G186700 chrUn 71647206 71651430 4224 True 1025.400000 1869 95.750800 2580 6069 5 chrUn.!!$R1 3489
11 TraesCS3A01G186700 chrUn 380338818 380339335 517 False 384.500000 414 96.899000 2580 3038 2 chrUn.!!$F1 458
12 TraesCS3A01G186700 chr7B 746346090 746347183 1093 True 1666.000000 1666 94.187000 3759 4853 1 chr7B.!!$R1 1094
13 TraesCS3A01G186700 chr7B 746336396 746337459 1063 True 421.000000 1018 92.753333 4859 5850 3 chr7B.!!$R2 991
14 TraesCS3A01G186700 chr1B 202678995 202684595 5600 True 524.142857 1511 91.365143 2677 5905 7 chr1B.!!$R2 3228
15 TraesCS3A01G186700 chr6D 291679325 291680408 1083 True 876.000000 876 81.779000 3910 5027 1 chr6D.!!$R1 1117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 0.029035 GAGCATGCTCCGCAAAGATG 59.971 55.000 33.31 0.0 43.62 2.90 F
982 983 0.106619 CCCTGAGTAGCTCCCGTAGT 60.107 60.000 0.00 0.0 0.00 2.73 F
1365 1366 1.747367 CTCGCTCGTCTCCCACTCT 60.747 63.158 0.00 0.0 0.00 3.24 F
2171 2172 1.066430 TGTGGAAGTATCGGGCAAGAC 60.066 52.381 0.00 0.0 0.00 3.01 F
3074 3970 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.0 0.00 3.33 F
3182 4445 0.608130 TCCAATGTCCAGTGACGGAG 59.392 55.000 0.00 0.0 44.86 4.63 F
3183 4446 1.021390 CCAATGTCCAGTGACGGAGC 61.021 60.000 0.00 0.0 44.86 4.70 F
3184 4447 1.021390 CAATGTCCAGTGACGGAGCC 61.021 60.000 0.00 0.0 44.86 4.70 F
5864 15464 1.131638 TCCCAGCAGTGATGGTATCC 58.868 55.000 25.14 0.0 37.40 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 1638 0.251121 TGGAACACACCATTCGGCAT 60.251 50.000 0.00 0.0 34.77 4.40 R
1872 1873 2.289631 TGATCGGCATGTCAAAGTCTGT 60.290 45.455 0.00 0.0 0.00 3.41 R
3164 4427 1.021390 GCTCCGTCACTGGACATTGG 61.021 60.000 0.00 0.0 44.54 3.16 R
3165 4428 1.021390 GGCTCCGTCACTGGACATTG 61.021 60.000 0.00 0.0 44.54 2.82 R
4800 7092 1.865865 CCCATACGTACTCATGTGCC 58.134 55.000 0.00 0.0 0.00 5.01 R
5246 12595 2.200955 GGAGATTGGGAAAGAGAGGGT 58.799 52.381 0.00 0.0 0.00 4.34 R
5463 14770 3.385749 CTAACCGTGATGGGCGCCT 62.386 63.158 28.56 7.3 44.64 5.52 R
6093 15694 1.336440 CAAACATGAGCGGGTGAAACA 59.664 47.619 0.00 0.0 39.98 2.83 R
8415 18067 0.036732 TGTGTCCTGCAACCTGATCC 59.963 55.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.755650 GATGGTGGAGTAGTAATGGCG 58.244 52.381 0.00 0.00 0.00 5.69
21 22 1.563924 TGGTGGAGTAGTAATGGCGT 58.436 50.000 0.00 0.00 0.00 5.68
22 23 1.479323 TGGTGGAGTAGTAATGGCGTC 59.521 52.381 0.00 0.00 0.00 5.19
23 24 1.535437 GGTGGAGTAGTAATGGCGTCG 60.535 57.143 0.00 0.00 0.00 5.12
24 25 0.742505 TGGAGTAGTAATGGCGTCGG 59.257 55.000 0.00 0.00 0.00 4.79
25 26 0.743097 GGAGTAGTAATGGCGTCGGT 59.257 55.000 0.00 0.00 0.00 4.69
26 27 1.535437 GGAGTAGTAATGGCGTCGGTG 60.535 57.143 0.00 0.00 0.00 4.94
27 28 0.179119 AGTAGTAATGGCGTCGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
28 29 0.179119 GTAGTAATGGCGTCGGTGCT 60.179 55.000 0.00 0.00 34.52 4.40
29 30 1.066002 GTAGTAATGGCGTCGGTGCTA 59.934 52.381 0.00 0.00 34.52 3.49
30 31 0.750850 AGTAATGGCGTCGGTGCTAT 59.249 50.000 0.00 0.00 37.70 2.97
31 32 1.138266 AGTAATGGCGTCGGTGCTATT 59.862 47.619 13.79 13.79 46.15 1.73
32 33 1.260561 GTAATGGCGTCGGTGCTATTG 59.739 52.381 17.17 0.00 44.44 1.90
33 34 1.095228 AATGGCGTCGGTGCTATTGG 61.095 55.000 9.78 0.00 43.33 3.16
34 35 3.573491 GGCGTCGGTGCTATTGGC 61.573 66.667 0.00 0.00 42.22 4.52
35 36 3.925238 GCGTCGGTGCTATTGGCG 61.925 66.667 0.00 0.00 45.43 5.69
36 37 3.261951 CGTCGGTGCTATTGGCGG 61.262 66.667 0.00 0.00 45.43 6.13
37 38 2.895372 GTCGGTGCTATTGGCGGG 60.895 66.667 0.00 0.00 45.43 6.13
38 39 3.395702 TCGGTGCTATTGGCGGGT 61.396 61.111 0.00 0.00 45.43 5.28
39 40 2.895372 CGGTGCTATTGGCGGGTC 60.895 66.667 0.00 0.00 45.43 4.46
40 41 2.895372 GGTGCTATTGGCGGGTCG 60.895 66.667 0.00 0.00 45.43 4.79
41 42 2.895372 GTGCTATTGGCGGGTCGG 60.895 66.667 0.00 0.00 45.43 4.79
42 43 3.078196 TGCTATTGGCGGGTCGGA 61.078 61.111 0.00 0.00 45.43 4.55
43 44 2.280186 GCTATTGGCGGGTCGGAG 60.280 66.667 0.00 0.00 0.00 4.63
44 45 2.280186 CTATTGGCGGGTCGGAGC 60.280 66.667 0.00 0.00 0.00 4.70
45 46 3.078196 TATTGGCGGGTCGGAGCA 61.078 61.111 9.66 0.00 34.54 4.26
46 47 2.978452 CTATTGGCGGGTCGGAGCAG 62.978 65.000 9.66 6.24 34.54 4.24
57 58 4.416738 GGAGCAGCGCCCCTTTCT 62.417 66.667 2.29 0.00 0.00 2.52
58 59 2.360475 GAGCAGCGCCCCTTTCTT 60.360 61.111 2.29 0.00 0.00 2.52
59 60 2.674380 AGCAGCGCCCCTTTCTTG 60.674 61.111 2.29 0.00 0.00 3.02
60 61 4.426112 GCAGCGCCCCTTTCTTGC 62.426 66.667 2.29 0.00 0.00 4.01
61 62 3.752339 CAGCGCCCCTTTCTTGCC 61.752 66.667 2.29 0.00 0.00 4.52
64 65 2.283173 CGCCCCTTTCTTGCCCTT 60.283 61.111 0.00 0.00 0.00 3.95
65 66 2.639327 CGCCCCTTTCTTGCCCTTG 61.639 63.158 0.00 0.00 0.00 3.61
66 67 2.947532 GCCCCTTTCTTGCCCTTGC 61.948 63.158 0.00 0.00 38.26 4.01
67 68 2.639327 CCCCTTTCTTGCCCTTGCG 61.639 63.158 0.00 0.00 41.78 4.85
68 69 2.639327 CCCTTTCTTGCCCTTGCGG 61.639 63.158 0.00 0.00 41.78 5.69
87 88 3.626924 GGACCACACGCCACTCCT 61.627 66.667 0.00 0.00 0.00 3.69
88 89 2.357517 GACCACACGCCACTCCTG 60.358 66.667 0.00 0.00 0.00 3.86
89 90 3.161450 ACCACACGCCACTCCTGT 61.161 61.111 0.00 0.00 0.00 4.00
90 91 2.666190 CCACACGCCACTCCTGTG 60.666 66.667 0.00 0.00 43.45 3.66
91 92 2.421314 CACACGCCACTCCTGTGA 59.579 61.111 0.00 0.00 46.55 3.58
92 93 1.227527 CACACGCCACTCCTGTGAA 60.228 57.895 0.00 0.00 46.55 3.18
93 94 0.813610 CACACGCCACTCCTGTGAAA 60.814 55.000 0.00 0.00 46.55 2.69
94 95 0.814010 ACACGCCACTCCTGTGAAAC 60.814 55.000 0.00 0.00 46.55 2.78
95 96 1.594293 ACGCCACTCCTGTGAAACG 60.594 57.895 0.00 2.07 46.55 3.60
96 97 2.317609 CGCCACTCCTGTGAAACGG 61.318 63.158 0.00 0.00 46.55 4.44
97 98 2.617274 GCCACTCCTGTGAAACGGC 61.617 63.158 0.00 0.00 46.55 5.68
98 99 1.966451 CCACTCCTGTGAAACGGCC 60.966 63.158 0.00 0.00 46.55 6.13
99 100 1.966451 CACTCCTGTGAAACGGCCC 60.966 63.158 0.00 0.00 46.55 5.80
100 101 2.359975 CTCCTGTGAAACGGCCCC 60.360 66.667 0.00 0.00 43.57 5.80
101 102 3.920093 CTCCTGTGAAACGGCCCCC 62.920 68.421 0.00 0.00 43.57 5.40
102 103 3.966543 CCTGTGAAACGGCCCCCT 61.967 66.667 0.00 0.00 43.57 4.79
103 104 2.672996 CTGTGAAACGGCCCCCTG 60.673 66.667 0.00 0.00 42.39 4.45
104 105 4.966787 TGTGAAACGGCCCCCTGC 62.967 66.667 0.00 0.00 42.39 4.85
148 149 3.804329 GGGTTCATGGCCGCCCTA 61.804 66.667 7.03 0.00 38.12 3.53
149 150 2.274104 GGTTCATGGCCGCCCTAA 59.726 61.111 7.03 0.00 0.00 2.69
150 151 2.119029 GGTTCATGGCCGCCCTAAC 61.119 63.158 7.03 8.37 0.00 2.34
151 152 2.119029 GTTCATGGCCGCCCTAACC 61.119 63.158 7.03 0.00 0.00 2.85
152 153 3.352990 TTCATGGCCGCCCTAACCC 62.353 63.158 7.03 0.00 0.00 4.11
153 154 4.122149 CATGGCCGCCCTAACCCA 62.122 66.667 7.03 0.00 0.00 4.51
154 155 4.123545 ATGGCCGCCCTAACCCAC 62.124 66.667 7.03 0.00 0.00 4.61
158 159 4.419921 CCGCCCTAACCCACCACC 62.420 72.222 0.00 0.00 0.00 4.61
159 160 3.642503 CGCCCTAACCCACCACCA 61.643 66.667 0.00 0.00 0.00 4.17
160 161 2.035155 GCCCTAACCCACCACCAC 59.965 66.667 0.00 0.00 0.00 4.16
161 162 2.836187 GCCCTAACCCACCACCACA 61.836 63.158 0.00 0.00 0.00 4.17
162 163 1.847686 CCCTAACCCACCACCACAA 59.152 57.895 0.00 0.00 0.00 3.33
163 164 0.407918 CCCTAACCCACCACCACAAT 59.592 55.000 0.00 0.00 0.00 2.71
164 165 1.544724 CCTAACCCACCACCACAATG 58.455 55.000 0.00 0.00 0.00 2.82
165 166 1.544724 CTAACCCACCACCACAATGG 58.455 55.000 0.00 0.00 46.10 3.16
166 167 1.074727 CTAACCCACCACCACAATGGA 59.925 52.381 0.84 0.00 43.02 3.41
167 168 0.486879 AACCCACCACCACAATGGAT 59.513 50.000 0.84 0.00 43.02 3.41
168 169 0.486879 ACCCACCACCACAATGGATT 59.513 50.000 0.84 0.00 43.02 3.01
169 170 0.896923 CCCACCACCACAATGGATTG 59.103 55.000 0.84 0.00 43.02 2.67
170 171 1.549722 CCCACCACCACAATGGATTGA 60.550 52.381 6.37 0.00 43.02 2.57
171 172 2.246469 CCACCACCACAATGGATTGAA 58.754 47.619 6.37 0.00 43.02 2.69
172 173 2.231964 CCACCACCACAATGGATTGAAG 59.768 50.000 6.37 0.12 43.02 3.02
173 174 2.231964 CACCACCACAATGGATTGAAGG 59.768 50.000 6.37 9.47 43.02 3.46
174 175 1.205417 CCACCACAATGGATTGAAGGC 59.795 52.381 6.37 0.00 43.02 4.35
175 176 1.135315 CACCACAATGGATTGAAGGCG 60.135 52.381 6.37 0.00 40.96 5.52
176 177 0.179129 CCACAATGGATTGAAGGCGC 60.179 55.000 0.00 0.00 40.96 6.53
177 178 0.523968 CACAATGGATTGAAGGCGCG 60.524 55.000 0.00 0.00 40.14 6.86
178 179 1.064621 CAATGGATTGAAGGCGCGG 59.935 57.895 8.83 0.00 40.14 6.46
179 180 1.077787 AATGGATTGAAGGCGCGGA 60.078 52.632 8.83 0.00 0.00 5.54
180 181 1.376609 AATGGATTGAAGGCGCGGAC 61.377 55.000 8.83 0.00 0.00 4.79
181 182 3.564027 GGATTGAAGGCGCGGACG 61.564 66.667 8.83 0.00 44.07 4.79
201 202 4.814294 GTGGGGCAGACGGCGTAG 62.814 72.222 14.74 10.40 46.16 3.51
224 225 2.202987 GCAGGTCTGATGGGCGAG 60.203 66.667 1.65 0.00 0.00 5.03
225 226 2.503061 CAGGTCTGATGGGCGAGG 59.497 66.667 0.00 0.00 0.00 4.63
226 227 2.060383 CAGGTCTGATGGGCGAGGA 61.060 63.158 0.00 0.00 0.00 3.71
227 228 1.760086 AGGTCTGATGGGCGAGGAG 60.760 63.158 0.00 0.00 0.00 3.69
228 229 2.801631 GGTCTGATGGGCGAGGAGG 61.802 68.421 0.00 0.00 0.00 4.30
229 230 2.060980 GTCTGATGGGCGAGGAGGT 61.061 63.158 0.00 0.00 0.00 3.85
230 231 2.060383 TCTGATGGGCGAGGAGGTG 61.060 63.158 0.00 0.00 0.00 4.00
231 232 3.746949 CTGATGGGCGAGGAGGTGC 62.747 68.421 0.00 0.00 0.00 5.01
232 233 4.899239 GATGGGCGAGGAGGTGCG 62.899 72.222 0.00 0.00 0.00 5.34
261 262 3.518003 GCGATGCAGGCCTTGAAT 58.482 55.556 0.00 0.00 0.00 2.57
262 263 1.065273 GCGATGCAGGCCTTGAATG 59.935 57.895 0.00 0.00 0.00 2.67
263 264 1.065273 CGATGCAGGCCTTGAATGC 59.935 57.895 0.00 4.30 40.40 3.56
269 270 2.830370 GGCCTTGAATGCCCGGAG 60.830 66.667 0.73 0.00 43.33 4.63
282 283 2.808315 CGGAGGAGACCACATCGG 59.192 66.667 0.00 0.00 42.50 4.18
283 284 2.501610 GGAGGAGACCACATCGGC 59.498 66.667 0.00 0.00 39.03 5.54
284 285 2.105128 GAGGAGACCACATCGGCG 59.895 66.667 0.00 0.00 39.03 6.46
285 286 2.362503 AGGAGACCACATCGGCGA 60.363 61.111 13.87 13.87 39.03 5.54
286 287 1.945354 GAGGAGACCACATCGGCGAA 61.945 60.000 15.93 0.00 39.03 4.70
287 288 1.810030 GGAGACCACATCGGCGAAC 60.810 63.158 15.93 1.61 39.03 3.95
288 289 2.126071 AGACCACATCGGCGAACG 60.126 61.111 15.93 11.22 46.11 3.95
321 322 4.143333 CGAGGGCGGAATCCACGT 62.143 66.667 0.00 0.00 0.00 4.49
322 323 2.202892 GAGGGCGGAATCCACGTC 60.203 66.667 0.00 0.00 34.75 4.34
329 330 3.347411 GGAATCCACGTCCGAGAAG 57.653 57.895 0.00 0.00 0.00 2.85
330 331 0.179108 GGAATCCACGTCCGAGAAGG 60.179 60.000 0.00 0.00 42.97 3.46
331 332 0.806492 GAATCCACGTCCGAGAAGGC 60.806 60.000 0.00 0.00 40.77 4.35
332 333 2.558554 AATCCACGTCCGAGAAGGCG 62.559 60.000 0.00 0.00 42.45 5.52
333 334 3.744719 CCACGTCCGAGAAGGCGA 61.745 66.667 7.69 0.00 40.35 5.54
334 335 2.504244 CACGTCCGAGAAGGCGAC 60.504 66.667 7.69 0.00 40.35 5.19
335 336 3.745803 ACGTCCGAGAAGGCGACC 61.746 66.667 7.69 0.00 40.35 4.79
336 337 4.493747 CGTCCGAGAAGGCGACCC 62.494 72.222 0.00 0.00 40.35 4.46
337 338 3.069318 GTCCGAGAAGGCGACCCT 61.069 66.667 0.00 0.00 45.77 4.34
338 339 2.754658 TCCGAGAAGGCGACCCTC 60.755 66.667 0.00 0.00 41.90 4.30
339 340 2.756283 CCGAGAAGGCGACCCTCT 60.756 66.667 6.70 0.00 41.90 3.69
340 341 2.776913 CCGAGAAGGCGACCCTCTC 61.777 68.421 7.75 7.75 41.90 3.20
341 342 2.776913 CGAGAAGGCGACCCTCTCC 61.777 68.421 11.42 0.00 41.90 3.71
342 343 1.682684 GAGAAGGCGACCCTCTCCA 60.683 63.158 6.70 0.00 41.90 3.86
343 344 1.229209 AGAAGGCGACCCTCTCCAA 60.229 57.895 0.00 0.00 41.90 3.53
344 345 1.219393 GAAGGCGACCCTCTCCAAG 59.781 63.158 0.00 0.00 41.90 3.61
345 346 2.245438 GAAGGCGACCCTCTCCAAGG 62.245 65.000 0.00 0.00 41.90 3.61
353 354 3.474570 CTCTCCAAGGAGGCGGGG 61.475 72.222 15.74 0.00 42.20 5.73
368 369 4.864334 GGGCTGCGAGGGGACATG 62.864 72.222 0.00 0.00 0.00 3.21
369 370 4.864334 GGCTGCGAGGGGACATGG 62.864 72.222 0.00 0.00 0.00 3.66
371 372 4.100084 CTGCGAGGGGACATGGCA 62.100 66.667 0.00 0.00 0.00 4.92
372 373 4.100084 TGCGAGGGGACATGGCAG 62.100 66.667 0.00 0.00 0.00 4.85
374 375 4.864334 CGAGGGGACATGGCAGCC 62.864 72.222 3.66 3.66 0.00 4.85
375 376 4.864334 GAGGGGACATGGCAGCCG 62.864 72.222 7.03 0.00 0.00 5.52
398 399 3.775654 GAGACAGGGCCGGTGGAG 61.776 72.222 15.83 0.00 0.00 3.86
399 400 4.316823 AGACAGGGCCGGTGGAGA 62.317 66.667 15.83 0.00 0.00 3.71
400 401 4.083862 GACAGGGCCGGTGGAGAC 62.084 72.222 15.83 0.00 0.00 3.36
405 406 3.775654 GGCCGGTGGAGACCTCAG 61.776 72.222 1.90 0.00 40.58 3.35
406 407 4.459089 GCCGGTGGAGACCTCAGC 62.459 72.222 1.90 0.00 40.58 4.26
407 408 3.775654 CCGGTGGAGACCTCAGCC 61.776 72.222 0.00 0.10 40.58 4.85
408 409 4.135153 CGGTGGAGACCTCAGCCG 62.135 72.222 13.82 13.82 40.58 5.52
409 410 3.775654 GGTGGAGACCTCAGCCGG 61.776 72.222 0.00 0.00 39.47 6.13
410 411 3.775654 GTGGAGACCTCAGCCGGG 61.776 72.222 2.18 0.00 0.00 5.73
411 412 4.316823 TGGAGACCTCAGCCGGGT 62.317 66.667 0.00 0.00 40.13 5.28
412 413 3.775654 GGAGACCTCAGCCGGGTG 61.776 72.222 27.73 27.73 37.17 4.61
413 414 3.775654 GAGACCTCAGCCGGGTGG 61.776 72.222 31.91 20.38 37.17 4.61
482 483 3.541713 GGGGGAGCACGCTAGGAG 61.542 72.222 0.00 0.00 0.00 3.69
483 484 2.442272 GGGGAGCACGCTAGGAGA 60.442 66.667 0.00 0.00 0.00 3.71
484 485 2.494530 GGGGAGCACGCTAGGAGAG 61.495 68.421 0.00 0.00 0.00 3.20
496 497 2.124983 GGAGAGCATGCTCCGCAA 60.125 61.111 37.79 0.00 44.52 4.85
497 498 1.746615 GGAGAGCATGCTCCGCAAA 60.747 57.895 37.79 0.00 44.52 3.68
498 499 1.712977 GGAGAGCATGCTCCGCAAAG 61.713 60.000 37.79 0.00 44.52 2.77
499 500 0.742281 GAGAGCATGCTCCGCAAAGA 60.742 55.000 37.79 0.00 43.62 2.52
500 501 0.107312 AGAGCATGCTCCGCAAAGAT 60.107 50.000 37.79 18.54 43.62 2.40
501 502 0.029035 GAGCATGCTCCGCAAAGATG 59.971 55.000 33.31 0.00 43.62 2.90
502 503 0.679002 AGCATGCTCCGCAAAGATGT 60.679 50.000 16.30 0.00 43.62 3.06
503 504 0.524816 GCATGCTCCGCAAAGATGTG 60.525 55.000 11.37 0.00 43.62 3.21
504 505 0.806868 CATGCTCCGCAAAGATGTGT 59.193 50.000 0.00 0.00 43.62 3.72
505 506 1.200716 CATGCTCCGCAAAGATGTGTT 59.799 47.619 0.00 0.00 43.62 3.32
506 507 0.592637 TGCTCCGCAAAGATGTGTTG 59.407 50.000 0.00 0.00 34.76 3.33
507 508 0.593128 GCTCCGCAAAGATGTGTTGT 59.407 50.000 0.00 0.00 35.21 3.32
508 509 1.804151 GCTCCGCAAAGATGTGTTGTA 59.196 47.619 0.00 0.00 35.21 2.41
509 510 2.420022 GCTCCGCAAAGATGTGTTGTAT 59.580 45.455 0.00 0.00 35.21 2.29
510 511 3.485877 GCTCCGCAAAGATGTGTTGTATC 60.486 47.826 0.00 0.00 35.21 2.24
511 512 3.669536 TCCGCAAAGATGTGTTGTATCA 58.330 40.909 0.00 0.00 35.21 2.15
512 513 4.260985 TCCGCAAAGATGTGTTGTATCAT 58.739 39.130 0.00 0.00 35.21 2.45
513 514 4.699735 TCCGCAAAGATGTGTTGTATCATT 59.300 37.500 0.00 0.00 35.21 2.57
514 515 5.182950 TCCGCAAAGATGTGTTGTATCATTT 59.817 36.000 0.00 0.00 35.21 2.32
515 516 5.863397 CCGCAAAGATGTGTTGTATCATTTT 59.137 36.000 0.00 0.00 35.21 1.82
516 517 6.365789 CCGCAAAGATGTGTTGTATCATTTTT 59.634 34.615 0.00 0.00 35.21 1.94
517 518 7.540400 CCGCAAAGATGTGTTGTATCATTTTTA 59.460 33.333 0.00 0.00 35.21 1.52
518 519 9.075519 CGCAAAGATGTGTTGTATCATTTTTAT 57.924 29.630 0.00 0.00 30.82 1.40
582 583 0.316841 ACATTTGAAATGCGGCGGTT 59.683 45.000 17.19 0.00 0.00 4.44
596 597 2.324330 CGGTTGGTTGAGCGCATCA 61.324 57.895 11.47 7.90 35.62 3.07
627 628 3.627714 CGCAAACGGACGGTTGTA 58.372 55.556 21.63 0.00 44.08 2.41
701 702 2.972505 CGTGCGTTGGAGTTGGCT 60.973 61.111 0.00 0.00 0.00 4.75
704 705 0.594796 GTGCGTTGGAGTTGGCTTTG 60.595 55.000 0.00 0.00 0.00 2.77
708 709 2.218603 CGTTGGAGTTGGCTTTGTAGT 58.781 47.619 0.00 0.00 0.00 2.73
709 710 3.395639 CGTTGGAGTTGGCTTTGTAGTA 58.604 45.455 0.00 0.00 0.00 1.82
711 712 4.454504 CGTTGGAGTTGGCTTTGTAGTAAT 59.545 41.667 0.00 0.00 0.00 1.89
743 744 2.733227 CGCTTTGCCTCATAAGCCTTTG 60.733 50.000 0.00 0.00 42.89 2.77
784 785 4.891992 TTTAGGGAGGCTGTCATATAGC 57.108 45.455 0.00 0.00 40.41 2.97
813 814 3.807071 GCTAGAGCTGCTCTAAACCATTC 59.193 47.826 32.26 15.71 41.74 2.67
816 817 4.916183 AGAGCTGCTCTAAACCATTCTTT 58.084 39.130 29.57 1.76 39.28 2.52
819 820 6.942576 AGAGCTGCTCTAAACCATTCTTTTTA 59.057 34.615 29.57 0.00 39.28 1.52
821 822 7.597386 AGCTGCTCTAAACCATTCTTTTTAAG 58.403 34.615 0.00 0.00 0.00 1.85
822 823 7.231519 AGCTGCTCTAAACCATTCTTTTTAAGT 59.768 33.333 0.00 0.00 0.00 2.24
824 825 9.399403 CTGCTCTAAACCATTCTTTTTAAGTTC 57.601 33.333 0.00 0.00 0.00 3.01
825 826 8.073768 TGCTCTAAACCATTCTTTTTAAGTTCG 58.926 33.333 0.00 0.00 0.00 3.95
826 827 7.060748 GCTCTAAACCATTCTTTTTAAGTTCGC 59.939 37.037 0.00 0.00 0.00 4.70
827 828 7.073265 TCTAAACCATTCTTTTTAAGTTCGCG 58.927 34.615 0.00 0.00 0.00 5.87
828 829 4.823790 ACCATTCTTTTTAAGTTCGCGT 57.176 36.364 5.77 0.00 0.00 6.01
898 899 6.426328 TGAAATTGCAAATTGTGGTGGATTAC 59.574 34.615 4.04 0.00 0.00 1.89
941 942 4.779993 AAGGCCGAGATATTTCTTTCCT 57.220 40.909 0.00 0.00 30.30 3.36
982 983 0.106619 CCCTGAGTAGCTCCCGTAGT 60.107 60.000 0.00 0.00 0.00 2.73
1191 1192 2.575525 CTGCACGACTCGCTCGAG 60.576 66.667 16.71 16.71 46.14 4.04
1251 1252 2.813908 GGGTTCGCGACGCAGATT 60.814 61.111 21.35 0.00 40.67 2.40
1365 1366 1.747367 CTCGCTCGTCTCCCACTCT 60.747 63.158 0.00 0.00 0.00 3.24
1377 1378 3.114616 CACTCTTCCGTGCCGCTG 61.115 66.667 0.00 0.00 0.00 5.18
1640 1641 9.762933 TTTCAAGCCCTTCATTAAATTATATGC 57.237 29.630 0.00 0.00 0.00 3.14
1641 1642 7.895759 TCAAGCCCTTCATTAAATTATATGCC 58.104 34.615 0.00 0.00 0.00 4.40
1642 1643 6.515272 AGCCCTTCATTAAATTATATGCCG 57.485 37.500 0.00 0.00 0.00 5.69
1643 1644 6.245408 AGCCCTTCATTAAATTATATGCCGA 58.755 36.000 0.00 0.00 0.00 5.54
1644 1645 6.719370 AGCCCTTCATTAAATTATATGCCGAA 59.281 34.615 0.00 0.00 0.00 4.30
1645 1646 7.397192 AGCCCTTCATTAAATTATATGCCGAAT 59.603 33.333 0.00 0.00 0.00 3.34
1646 1647 7.489113 GCCCTTCATTAAATTATATGCCGAATG 59.511 37.037 0.00 0.00 0.00 2.67
1872 1873 8.994429 ATGTTGTTTTTGTTGTCTACAATTGA 57.006 26.923 13.59 0.00 45.72 2.57
1998 1999 5.163216 GGAGATCTCCTTTCCACATGATCTT 60.163 44.000 31.11 0.00 46.16 2.40
1999 2000 5.682659 AGATCTCCTTTCCACATGATCTTG 58.317 41.667 0.00 7.04 37.84 3.02
2005 2006 3.657398 TTCCACATGATCTTGATGGCT 57.343 42.857 15.03 0.00 0.00 4.75
2163 2164 5.830900 GCTAAATAGCTGTGGAAGTATCG 57.169 43.478 5.19 0.00 45.62 2.92
2171 2172 1.066430 TGTGGAAGTATCGGGCAAGAC 60.066 52.381 0.00 0.00 0.00 3.01
2187 2188 5.105595 GGGCAAGACTATCTTTGAGCATTTT 60.106 40.000 0.00 0.00 33.78 1.82
2284 2285 7.747155 ATGGAGATATTTTCATCAGCTTCTG 57.253 36.000 0.00 0.00 0.00 3.02
2329 2330 5.711976 CCATAGTGGTTTCAGGTTTCAGAAT 59.288 40.000 0.00 0.00 31.35 2.40
2446 2447 7.439381 TCCGGACTAGCCTAAACTTATTATTG 58.561 38.462 0.00 0.00 0.00 1.90
2476 2477 8.916062 TCTGTTCCATACTTATCCGTATACAAA 58.084 33.333 3.32 0.00 0.00 2.83
2486 2487 9.530633 ACTTATCCGTATACAAATCTTCTGTTC 57.469 33.333 3.32 0.00 0.00 3.18
3074 3970 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
3145 4408 3.455619 AAAACATCGCATCGTCTTCAC 57.544 42.857 0.00 0.00 0.00 3.18
3171 4434 3.085952 TCCACCTTGGATTCCAATGTC 57.914 47.619 19.76 0.00 42.67 3.06
3172 4435 2.102578 CCACCTTGGATTCCAATGTCC 58.897 52.381 19.76 0.00 43.07 4.02
3173 4436 2.557229 CCACCTTGGATTCCAATGTCCA 60.557 50.000 19.76 0.00 43.07 4.02
3174 4437 2.756760 CACCTTGGATTCCAATGTCCAG 59.243 50.000 19.76 7.87 44.74 3.86
3175 4438 2.379907 ACCTTGGATTCCAATGTCCAGT 59.620 45.455 18.28 6.98 44.74 4.00
3176 4439 2.756760 CCTTGGATTCCAATGTCCAGTG 59.243 50.000 18.28 4.55 44.74 3.66
3177 4440 3.561960 CCTTGGATTCCAATGTCCAGTGA 60.562 47.826 18.28 0.00 44.74 3.41
3178 4441 3.071874 TGGATTCCAATGTCCAGTGAC 57.928 47.619 1.94 0.00 39.51 3.67
3179 4442 2.009774 GGATTCCAATGTCCAGTGACG 58.990 52.381 0.00 0.00 44.86 4.35
3180 4443 2.009774 GATTCCAATGTCCAGTGACGG 58.990 52.381 0.00 0.00 44.86 4.79
3181 4444 1.052617 TTCCAATGTCCAGTGACGGA 58.947 50.000 0.00 0.00 44.86 4.69
3182 4445 0.608130 TCCAATGTCCAGTGACGGAG 59.392 55.000 0.00 0.00 44.86 4.63
3183 4446 1.021390 CCAATGTCCAGTGACGGAGC 61.021 60.000 0.00 0.00 44.86 4.70
3184 4447 1.021390 CAATGTCCAGTGACGGAGCC 61.021 60.000 0.00 0.00 44.86 4.70
3185 4448 1.480212 AATGTCCAGTGACGGAGCCA 61.480 55.000 0.00 0.00 44.86 4.75
3186 4449 1.892819 ATGTCCAGTGACGGAGCCAG 61.893 60.000 0.00 0.00 44.86 4.85
3187 4450 2.997315 TCCAGTGACGGAGCCAGG 60.997 66.667 0.00 0.00 0.00 4.45
4157 5427 5.895636 AATATTGATCACCGTCTGCAAAA 57.104 34.783 0.00 0.00 0.00 2.44
4800 7092 6.313905 AGCAACGACACCTAGAGAATTAATTG 59.686 38.462 5.17 0.00 0.00 2.32
5246 12595 2.287977 TCTCGTTGTCTTCTCCTCCA 57.712 50.000 0.00 0.00 0.00 3.86
5463 14770 1.372582 GTGGCGAGAAGAATGATGCA 58.627 50.000 0.00 0.00 0.00 3.96
5836 15418 3.447229 ACCAACCAAGAAAACCAGAACAG 59.553 43.478 0.00 0.00 0.00 3.16
5864 15464 1.131638 TCCCAGCAGTGATGGTATCC 58.868 55.000 25.14 0.00 37.40 2.59
6093 15694 6.948886 GGAGAGATTTTCCTTAGGGTCTTTTT 59.051 38.462 0.00 0.00 0.00 1.94
6211 15812 5.397221 CCTGATGATTCTGGATGTTACACCT 60.397 44.000 0.00 0.00 42.12 4.00
6333 15934 1.487976 CCTGAATAGCTTGCTCTGGGA 59.512 52.381 0.00 0.00 0.00 4.37
6338 15939 4.141846 TGAATAGCTTGCTCTGGGAGTTAG 60.142 45.833 0.00 0.00 31.39 2.34
6355 15956 6.267928 GGGAGTTAGATGGTTGCTTATCTCTA 59.732 42.308 0.00 0.00 35.42 2.43
6619 16223 0.957395 CGGCAGTCAAGCAAGGTCAT 60.957 55.000 0.00 0.00 35.83 3.06
6620 16224 0.524862 GGCAGTCAAGCAAGGTCATG 59.475 55.000 0.00 0.00 35.83 3.07
6636 16240 5.133221 AGGTCATGTGGCAATATAAGGTTC 58.867 41.667 0.00 0.00 0.00 3.62
6661 16265 3.610040 TGTGTATAACCTGGTCAGCAG 57.390 47.619 0.00 0.00 0.00 4.24
6663 16267 3.774766 TGTGTATAACCTGGTCAGCAGAT 59.225 43.478 5.11 0.00 0.00 2.90
6691 16295 9.729281 ATTGCTATTGTCATCATACATGATACA 57.271 29.630 0.00 7.19 45.23 2.29
6837 16441 2.359861 TGCTTTGGCAGGTACAACACC 61.360 52.381 0.00 0.00 44.28 4.16
6850 16454 5.296748 GGTACAACACCTTTCCGTTTAGTA 58.703 41.667 0.00 0.00 44.79 1.82
6882 16486 2.100916 CTGGAGGTGTATACAAGGACGG 59.899 54.545 7.25 0.57 0.00 4.79
6896 16500 3.509137 GACGGCGTGGTGGAACTCA 62.509 63.158 21.19 0.00 36.74 3.41
6948 16552 7.120285 ACAAGTCACCTCATTGATAATTCACAG 59.880 37.037 0.00 0.00 0.00 3.66
7014 16618 2.050918 TGTCCACACCTGTACATTCCA 58.949 47.619 0.00 0.00 0.00 3.53
7025 16629 3.885297 CTGTACATTCCATGTTCCCCATC 59.115 47.826 0.00 0.00 41.63 3.51
7026 16630 3.268072 TGTACATTCCATGTTCCCCATCA 59.732 43.478 0.00 0.00 41.63 3.07
7027 16631 3.693526 ACATTCCATGTTCCCCATCAT 57.306 42.857 0.00 0.00 41.63 2.45
7072 16676 5.077134 GCCATTGCCTTTCTTTTCTGTAT 57.923 39.130 0.00 0.00 0.00 2.29
7075 16679 7.096551 GCCATTGCCTTTCTTTTCTGTATTTA 58.903 34.615 0.00 0.00 0.00 1.40
7078 16682 6.584185 TGCCTTTCTTTTCTGTATTTACCC 57.416 37.500 0.00 0.00 0.00 3.69
7079 16683 6.311735 TGCCTTTCTTTTCTGTATTTACCCT 58.688 36.000 0.00 0.00 0.00 4.34
7080 16684 7.463431 TGCCTTTCTTTTCTGTATTTACCCTA 58.537 34.615 0.00 0.00 0.00 3.53
7081 16685 7.945664 TGCCTTTCTTTTCTGTATTTACCCTAA 59.054 33.333 0.00 0.00 0.00 2.69
7082 16686 8.459635 GCCTTTCTTTTCTGTATTTACCCTAAG 58.540 37.037 0.00 0.00 0.00 2.18
7085 16689 9.511272 TTTCTTTTCTGTATTTACCCTAAGTCC 57.489 33.333 0.00 0.00 0.00 3.85
7086 16690 7.627311 TCTTTTCTGTATTTACCCTAAGTCCC 58.373 38.462 0.00 0.00 0.00 4.46
7087 16691 5.603170 TTCTGTATTTACCCTAAGTCCCG 57.397 43.478 0.00 0.00 0.00 5.14
7088 16692 4.613437 TCTGTATTTACCCTAAGTCCCGT 58.387 43.478 0.00 0.00 0.00 5.28
7114 16718 4.333649 TCTCCAAATCTGCATTTTCTAGCG 59.666 41.667 0.00 0.00 28.97 4.26
7123 16727 2.939103 GCATTTTCTAGCGGTCACTGAT 59.061 45.455 0.00 0.00 0.00 2.90
7168 16772 1.427592 GATGGCAGCTTGCGAGAGAC 61.428 60.000 4.70 0.00 46.21 3.36
7263 16867 4.286297 AGATTGCCTGCAGTACTTAACA 57.714 40.909 13.81 0.00 0.00 2.41
7274 16878 6.167685 TGCAGTACTTAACATCGTACCAAAT 58.832 36.000 0.00 0.00 37.33 2.32
7300 16905 7.944061 TGCCATGGTATTTATCTTCAAATCTG 58.056 34.615 14.67 0.00 30.84 2.90
7500 17105 4.359706 CTGCAAGTTACTGGACCAAAAAC 58.640 43.478 9.60 9.60 0.00 2.43
7630 17235 9.252962 CAAGCATTTATGAAATGGGACTAAATC 57.747 33.333 12.53 0.00 46.47 2.17
7662 17267 5.335127 GTTCTCACATGTTTGATATGGCAC 58.665 41.667 0.00 0.00 0.00 5.01
7666 17271 6.883756 TCTCACATGTTTGATATGGCACTTTA 59.116 34.615 0.00 0.00 0.00 1.85
7670 17275 7.760794 CACATGTTTGATATGGCACTTTACATT 59.239 33.333 0.00 0.00 0.00 2.71
7681 17327 6.399743 TGGCACTTTACATTAACTCGTATCA 58.600 36.000 0.00 0.00 0.00 2.15
7730 17376 5.455849 CACCGAAGAACTTGTACGAGATATG 59.544 44.000 17.37 1.74 0.00 1.78
7731 17377 5.125097 ACCGAAGAACTTGTACGAGATATGT 59.875 40.000 17.37 2.10 0.00 2.29
7776 17423 4.464951 AGTTTACCACGGATCACAGTATCA 59.535 41.667 0.00 0.00 0.00 2.15
7781 17428 3.368427 CCACGGATCACAGTATCACACTT 60.368 47.826 0.00 0.00 34.26 3.16
7785 17432 3.620374 GGATCACAGTATCACACTTGCAG 59.380 47.826 0.00 0.00 34.26 4.41
7804 17451 7.550906 ACTTGCAGAAGATTCAAGGAATACTAC 59.449 37.037 6.23 0.00 40.93 2.73
8324 17976 2.281208 CCGTCGGCAAACCTGGAA 60.281 61.111 0.00 0.00 0.00 3.53
8413 18065 6.202188 TCGTACTTGAAGTCTGGAATCAAAAC 59.798 38.462 0.00 0.00 33.08 2.43
8415 18067 6.382869 ACTTGAAGTCTGGAATCAAAACAG 57.617 37.500 0.00 0.00 33.08 3.16
8436 18090 0.473755 ATCAGGTTGCAGGACACACA 59.526 50.000 0.00 0.00 0.00 3.72
8437 18091 0.463654 TCAGGTTGCAGGACACACAC 60.464 55.000 0.00 0.00 0.00 3.82
8438 18092 0.747644 CAGGTTGCAGGACACACACA 60.748 55.000 0.00 0.00 0.00 3.72
8440 18094 1.351707 GTTGCAGGACACACACACG 59.648 57.895 0.00 0.00 0.00 4.49
8441 18095 1.087202 GTTGCAGGACACACACACGA 61.087 55.000 0.00 0.00 0.00 4.35
8442 18096 1.087202 TTGCAGGACACACACACGAC 61.087 55.000 0.00 0.00 0.00 4.34
8444 18098 1.594293 CAGGACACACACACGACCC 60.594 63.158 0.00 0.00 0.00 4.46
8445 18099 1.760875 AGGACACACACACGACCCT 60.761 57.895 0.00 0.00 0.00 4.34
8446 18100 1.594293 GGACACACACACGACCCTG 60.594 63.158 0.00 0.00 0.00 4.45
8447 18101 1.143183 GACACACACACGACCCTGT 59.857 57.895 0.00 0.00 0.00 4.00
8449 18103 1.142965 CACACACACGACCCTGTGA 59.857 57.895 10.50 0.00 43.77 3.58
8450 18104 0.875908 CACACACACGACCCTGTGAG 60.876 60.000 10.50 5.49 43.77 3.51
8451 18105 1.327690 ACACACACGACCCTGTGAGT 61.328 55.000 10.50 6.09 43.77 3.41
8452 18106 0.671796 CACACACGACCCTGTGAGTA 59.328 55.000 10.50 0.00 43.77 2.59
8475 18129 1.663643 CACACACAACACAAGTACGCT 59.336 47.619 0.00 0.00 0.00 5.07
8499 18153 1.271163 CGTTGGTGACATGGTAAGGGT 60.271 52.381 0.00 0.00 42.32 4.34
8503 18157 4.938575 TGGTGACATGGTAAGGGTAATT 57.061 40.909 0.00 0.00 33.40 1.40
8504 18158 4.594970 TGGTGACATGGTAAGGGTAATTG 58.405 43.478 0.00 0.00 33.40 2.32
8505 18159 4.043561 TGGTGACATGGTAAGGGTAATTGT 59.956 41.667 0.00 0.00 33.40 2.71
8506 18160 4.398044 GGTGACATGGTAAGGGTAATTGTG 59.602 45.833 0.00 0.00 0.00 3.33
8507 18161 5.007682 GTGACATGGTAAGGGTAATTGTGT 58.992 41.667 0.00 0.00 0.00 3.72
8508 18162 5.007034 TGACATGGTAAGGGTAATTGTGTG 58.993 41.667 0.00 0.00 0.00 3.82
8509 18163 4.340617 ACATGGTAAGGGTAATTGTGTGG 58.659 43.478 0.00 0.00 0.00 4.17
8510 18164 2.797786 TGGTAAGGGTAATTGTGTGGC 58.202 47.619 0.00 0.00 0.00 5.01
8511 18165 2.108425 TGGTAAGGGTAATTGTGTGGCA 59.892 45.455 0.00 0.00 0.00 4.92
8512 18166 2.752903 GGTAAGGGTAATTGTGTGGCAG 59.247 50.000 0.00 0.00 0.00 4.85
8513 18167 1.923356 AAGGGTAATTGTGTGGCAGG 58.077 50.000 0.00 0.00 0.00 4.85
8514 18168 1.072266 AGGGTAATTGTGTGGCAGGA 58.928 50.000 0.00 0.00 0.00 3.86
8515 18169 1.427368 AGGGTAATTGTGTGGCAGGAA 59.573 47.619 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.102588 ACGCCATTACTACTCCACCATC 59.897 50.000 0.00 0.00 0.00 3.51
3 4 1.535437 CGACGCCATTACTACTCCACC 60.535 57.143 0.00 0.00 0.00 4.61
4 5 1.535437 CCGACGCCATTACTACTCCAC 60.535 57.143 0.00 0.00 0.00 4.02
6 7 0.743097 ACCGACGCCATTACTACTCC 59.257 55.000 0.00 0.00 0.00 3.85
7 8 1.836383 CACCGACGCCATTACTACTC 58.164 55.000 0.00 0.00 0.00 2.59
8 9 0.179119 GCACCGACGCCATTACTACT 60.179 55.000 0.00 0.00 0.00 2.57
9 10 0.179119 AGCACCGACGCCATTACTAC 60.179 55.000 0.00 0.00 0.00 2.73
10 11 1.391577 TAGCACCGACGCCATTACTA 58.608 50.000 0.00 0.00 0.00 1.82
11 12 0.750850 ATAGCACCGACGCCATTACT 59.249 50.000 0.00 0.00 0.00 2.24
12 13 1.260561 CAATAGCACCGACGCCATTAC 59.739 52.381 0.00 0.00 0.00 1.89
13 14 1.577468 CAATAGCACCGACGCCATTA 58.423 50.000 0.00 0.00 0.00 1.90
14 15 1.095228 CCAATAGCACCGACGCCATT 61.095 55.000 0.00 0.00 0.00 3.16
15 16 1.523711 CCAATAGCACCGACGCCAT 60.524 57.895 0.00 0.00 0.00 4.40
16 17 2.125310 CCAATAGCACCGACGCCA 60.125 61.111 0.00 0.00 0.00 5.69
17 18 3.573491 GCCAATAGCACCGACGCC 61.573 66.667 0.00 0.00 42.97 5.68
18 19 3.925238 CGCCAATAGCACCGACGC 61.925 66.667 0.00 0.00 44.04 5.19
19 20 3.261951 CCGCCAATAGCACCGACG 61.262 66.667 0.00 0.00 44.04 5.12
20 21 2.895372 CCCGCCAATAGCACCGAC 60.895 66.667 0.00 0.00 44.04 4.79
21 22 3.379865 GACCCGCCAATAGCACCGA 62.380 63.158 0.00 0.00 44.04 4.69
22 23 2.895372 GACCCGCCAATAGCACCG 60.895 66.667 0.00 0.00 44.04 4.94
23 24 2.895372 CGACCCGCCAATAGCACC 60.895 66.667 0.00 0.00 44.04 5.01
24 25 2.895372 CCGACCCGCCAATAGCAC 60.895 66.667 0.00 0.00 44.04 4.40
25 26 3.078196 TCCGACCCGCCAATAGCA 61.078 61.111 0.00 0.00 44.04 3.49
26 27 2.280186 CTCCGACCCGCCAATAGC 60.280 66.667 0.00 0.00 38.52 2.97
27 28 2.280186 GCTCCGACCCGCCAATAG 60.280 66.667 0.00 0.00 0.00 1.73
28 29 3.078196 TGCTCCGACCCGCCAATA 61.078 61.111 0.00 0.00 0.00 1.90
29 30 4.473520 CTGCTCCGACCCGCCAAT 62.474 66.667 0.00 0.00 0.00 3.16
41 42 2.360475 AAGAAAGGGGCGCTGCTC 60.360 61.111 7.64 5.32 0.00 4.26
42 43 2.674380 CAAGAAAGGGGCGCTGCT 60.674 61.111 7.64 2.91 0.00 4.24
43 44 4.426112 GCAAGAAAGGGGCGCTGC 62.426 66.667 7.64 2.13 0.00 5.25
44 45 3.752339 GGCAAGAAAGGGGCGCTG 61.752 66.667 7.64 0.00 0.00 5.18
47 48 2.283173 AAGGGCAAGAAAGGGGCG 60.283 61.111 0.00 0.00 0.00 6.13
48 49 2.947532 GCAAGGGCAAGAAAGGGGC 61.948 63.158 0.00 0.00 40.72 5.80
49 50 2.639327 CGCAAGGGCAAGAAAGGGG 61.639 63.158 0.00 0.00 41.24 4.79
50 51 2.964978 CGCAAGGGCAAGAAAGGG 59.035 61.111 0.00 0.00 41.24 3.95
70 71 3.626924 AGGAGTGGCGTGTGGTCC 61.627 66.667 0.00 0.00 0.00 4.46
71 72 2.357517 CAGGAGTGGCGTGTGGTC 60.358 66.667 0.00 0.00 0.00 4.02
72 73 3.161450 ACAGGAGTGGCGTGTGGT 61.161 61.111 0.00 0.00 43.44 4.16
75 76 0.814010 GTTTCACAGGAGTGGCGTGT 60.814 55.000 0.00 0.00 45.91 4.49
76 77 1.831389 CGTTTCACAGGAGTGGCGTG 61.831 60.000 0.00 0.00 45.91 5.34
77 78 1.594293 CGTTTCACAGGAGTGGCGT 60.594 57.895 0.00 0.00 45.91 5.68
78 79 2.317609 CCGTTTCACAGGAGTGGCG 61.318 63.158 0.00 0.00 45.91 5.69
79 80 2.617274 GCCGTTTCACAGGAGTGGC 61.617 63.158 0.00 0.00 45.91 5.01
80 81 1.966451 GGCCGTTTCACAGGAGTGG 60.966 63.158 0.00 0.00 45.91 4.00
82 83 2.430367 GGGCCGTTTCACAGGAGT 59.570 61.111 0.00 0.00 0.00 3.85
83 84 2.359975 GGGGCCGTTTCACAGGAG 60.360 66.667 0.00 0.00 0.00 3.69
84 85 3.961414 GGGGGCCGTTTCACAGGA 61.961 66.667 0.00 0.00 0.00 3.86
85 86 3.966543 AGGGGGCCGTTTCACAGG 61.967 66.667 0.00 0.00 0.00 4.00
86 87 2.672996 CAGGGGGCCGTTTCACAG 60.673 66.667 0.00 0.00 0.00 3.66
87 88 4.966787 GCAGGGGGCCGTTTCACA 62.967 66.667 0.00 0.00 36.11 3.58
131 132 3.352990 TTAGGGCGGCCATGAACCC 62.353 63.158 31.59 6.57 43.17 4.11
132 133 2.119029 GTTAGGGCGGCCATGAACC 61.119 63.158 31.59 11.37 0.00 3.62
133 134 2.119029 GGTTAGGGCGGCCATGAAC 61.119 63.158 31.59 26.86 0.00 3.18
134 135 2.274104 GGTTAGGGCGGCCATGAA 59.726 61.111 31.59 17.81 0.00 2.57
135 136 3.804329 GGGTTAGGGCGGCCATGA 61.804 66.667 31.59 7.91 0.00 3.07
136 137 4.122149 TGGGTTAGGGCGGCCATG 62.122 66.667 31.59 0.00 0.00 3.66
137 138 4.123545 GTGGGTTAGGGCGGCCAT 62.124 66.667 31.59 17.59 0.00 4.40
141 142 4.419921 GGTGGTGGGTTAGGGCGG 62.420 72.222 0.00 0.00 0.00 6.13
142 143 3.642503 TGGTGGTGGGTTAGGGCG 61.643 66.667 0.00 0.00 0.00 6.13
143 144 2.035155 GTGGTGGTGGGTTAGGGC 59.965 66.667 0.00 0.00 0.00 5.19
144 145 0.407918 ATTGTGGTGGTGGGTTAGGG 59.592 55.000 0.00 0.00 0.00 3.53
145 146 1.544724 CATTGTGGTGGTGGGTTAGG 58.455 55.000 0.00 0.00 0.00 2.69
146 147 1.074727 TCCATTGTGGTGGTGGGTTAG 59.925 52.381 0.00 0.00 39.03 2.34
147 148 1.149986 TCCATTGTGGTGGTGGGTTA 58.850 50.000 0.00 0.00 39.03 2.85
148 149 0.486879 ATCCATTGTGGTGGTGGGTT 59.513 50.000 0.00 0.00 39.03 4.11
149 150 0.486879 AATCCATTGTGGTGGTGGGT 59.513 50.000 0.00 0.00 39.03 4.51
150 151 0.896923 CAATCCATTGTGGTGGTGGG 59.103 55.000 0.00 0.00 39.03 4.61
151 152 1.921982 TCAATCCATTGTGGTGGTGG 58.078 50.000 0.00 0.00 39.03 4.61
152 153 2.231964 CCTTCAATCCATTGTGGTGGTG 59.768 50.000 0.00 0.00 39.03 4.17
153 154 2.528564 CCTTCAATCCATTGTGGTGGT 58.471 47.619 0.00 0.00 39.03 4.16
154 155 1.205417 GCCTTCAATCCATTGTGGTGG 59.795 52.381 12.31 0.00 39.03 4.61
155 156 1.135315 CGCCTTCAATCCATTGTGGTG 60.135 52.381 12.31 11.52 39.03 4.17
156 157 1.176527 CGCCTTCAATCCATTGTGGT 58.823 50.000 12.31 0.00 39.03 4.16
157 158 0.179129 GCGCCTTCAATCCATTGTGG 60.179 55.000 0.00 4.91 38.84 4.17
158 159 0.523968 CGCGCCTTCAATCCATTGTG 60.524 55.000 0.00 0.00 38.84 3.33
159 160 1.656818 CCGCGCCTTCAATCCATTGT 61.657 55.000 0.00 0.00 38.84 2.71
160 161 1.064621 CCGCGCCTTCAATCCATTG 59.935 57.895 0.00 0.00 39.10 2.82
161 162 1.077787 TCCGCGCCTTCAATCCATT 60.078 52.632 0.00 0.00 0.00 3.16
162 163 1.819632 GTCCGCGCCTTCAATCCAT 60.820 57.895 0.00 0.00 0.00 3.41
163 164 2.435938 GTCCGCGCCTTCAATCCA 60.436 61.111 0.00 0.00 0.00 3.41
164 165 3.564027 CGTCCGCGCCTTCAATCC 61.564 66.667 0.00 0.00 0.00 3.01
184 185 4.814294 CTACGCCGTCTGCCCCAC 62.814 72.222 0.00 0.00 36.24 4.61
206 207 4.147449 TCGCCCATCAGACCTGCG 62.147 66.667 0.00 0.00 46.09 5.18
207 208 2.202987 CTCGCCCATCAGACCTGC 60.203 66.667 0.00 0.00 0.00 4.85
208 209 2.025767 CTCCTCGCCCATCAGACCTG 62.026 65.000 0.00 0.00 0.00 4.00
209 210 1.760086 CTCCTCGCCCATCAGACCT 60.760 63.158 0.00 0.00 0.00 3.85
210 211 2.801631 CCTCCTCGCCCATCAGACC 61.802 68.421 0.00 0.00 0.00 3.85
211 212 2.060980 ACCTCCTCGCCCATCAGAC 61.061 63.158 0.00 0.00 0.00 3.51
212 213 2.060383 CACCTCCTCGCCCATCAGA 61.060 63.158 0.00 0.00 0.00 3.27
213 214 2.503061 CACCTCCTCGCCCATCAG 59.497 66.667 0.00 0.00 0.00 2.90
214 215 3.785859 GCACCTCCTCGCCCATCA 61.786 66.667 0.00 0.00 0.00 3.07
215 216 4.899239 CGCACCTCCTCGCCCATC 62.899 72.222 0.00 0.00 0.00 3.51
244 245 1.065273 CATTCAAGGCCTGCATCGC 59.935 57.895 5.69 0.00 0.00 4.58
245 246 1.065273 GCATTCAAGGCCTGCATCG 59.935 57.895 5.69 0.00 35.96 3.84
253 254 2.830370 CCTCCGGGCATTCAAGGC 60.830 66.667 0.00 0.00 0.00 4.35
254 255 1.153086 CTCCTCCGGGCATTCAAGG 60.153 63.158 0.00 0.00 0.00 3.61
255 256 0.462759 GTCTCCTCCGGGCATTCAAG 60.463 60.000 0.00 0.00 0.00 3.02
256 257 1.602237 GTCTCCTCCGGGCATTCAA 59.398 57.895 0.00 0.00 0.00 2.69
257 258 2.367202 GGTCTCCTCCGGGCATTCA 61.367 63.158 0.00 0.00 0.00 2.57
258 259 2.367202 TGGTCTCCTCCGGGCATTC 61.367 63.158 0.00 0.00 0.00 2.67
259 260 2.285368 TGGTCTCCTCCGGGCATT 60.285 61.111 0.00 0.00 0.00 3.56
260 261 3.083997 GTGGTCTCCTCCGGGCAT 61.084 66.667 0.00 0.00 0.00 4.40
261 262 3.924013 ATGTGGTCTCCTCCGGGCA 62.924 63.158 0.00 0.00 0.00 5.36
262 263 3.083997 ATGTGGTCTCCTCCGGGC 61.084 66.667 0.00 0.00 0.00 6.13
263 264 2.786495 CGATGTGGTCTCCTCCGGG 61.786 68.421 0.00 0.00 0.00 5.73
264 265 2.786495 CCGATGTGGTCTCCTCCGG 61.786 68.421 0.00 0.00 0.00 5.14
265 266 2.808315 CCGATGTGGTCTCCTCCG 59.192 66.667 0.00 0.00 0.00 4.63
266 267 2.501610 GCCGATGTGGTCTCCTCC 59.498 66.667 0.00 0.00 41.21 4.30
267 268 1.945354 TTCGCCGATGTGGTCTCCTC 61.945 60.000 0.00 0.00 41.21 3.71
268 269 1.982395 TTCGCCGATGTGGTCTCCT 60.982 57.895 0.00 0.00 41.21 3.69
269 270 1.810030 GTTCGCCGATGTGGTCTCC 60.810 63.158 0.00 0.00 41.21 3.71
270 271 2.158959 CGTTCGCCGATGTGGTCTC 61.159 63.158 0.00 0.00 41.21 3.36
271 272 2.126071 CGTTCGCCGATGTGGTCT 60.126 61.111 0.00 0.00 41.21 3.85
272 273 2.126228 TCGTTCGCCGATGTGGTC 60.126 61.111 0.00 0.00 41.60 4.02
304 305 4.143333 ACGTGGATTCCGCCCTCG 62.143 66.667 10.62 0.00 43.75 4.63
305 306 2.202892 GACGTGGATTCCGCCCTC 60.203 66.667 10.62 2.20 0.00 4.30
306 307 3.782443 GGACGTGGATTCCGCCCT 61.782 66.667 10.62 0.00 0.00 5.19
311 312 0.179108 CCTTCTCGGACGTGGATTCC 60.179 60.000 0.00 0.00 33.16 3.01
312 313 0.806492 GCCTTCTCGGACGTGGATTC 60.806 60.000 0.00 0.00 33.16 2.52
313 314 1.218316 GCCTTCTCGGACGTGGATT 59.782 57.895 0.00 0.00 33.16 3.01
314 315 2.893398 GCCTTCTCGGACGTGGAT 59.107 61.111 0.00 0.00 33.16 3.41
315 316 3.744719 CGCCTTCTCGGACGTGGA 61.745 66.667 0.00 0.00 33.16 4.02
316 317 3.744719 TCGCCTTCTCGGACGTGG 61.745 66.667 0.00 0.00 35.02 4.94
317 318 2.504244 GTCGCCTTCTCGGACGTG 60.504 66.667 0.00 0.00 35.02 4.49
318 319 3.745803 GGTCGCCTTCTCGGACGT 61.746 66.667 0.00 0.00 35.02 4.34
319 320 4.493747 GGGTCGCCTTCTCGGACG 62.494 72.222 0.00 0.00 34.84 4.79
320 321 3.066233 GAGGGTCGCCTTCTCGGAC 62.066 68.421 1.64 0.00 33.16 4.79
321 322 2.754658 GAGGGTCGCCTTCTCGGA 60.755 66.667 1.64 0.00 33.16 4.55
322 323 2.756283 AGAGGGTCGCCTTCTCGG 60.756 66.667 4.98 0.00 34.83 4.63
323 324 2.802106 GAGAGGGTCGCCTTCTCG 59.198 66.667 17.57 0.00 44.58 4.04
325 326 1.229209 TTGGAGAGGGTCGCCTTCT 60.229 57.895 9.65 9.65 42.80 2.85
326 327 1.219393 CTTGGAGAGGGTCGCCTTC 59.781 63.158 0.00 0.70 37.24 3.46
327 328 2.294078 CCTTGGAGAGGGTCGCCTT 61.294 63.158 0.00 0.00 42.26 4.35
328 329 2.685380 CCTTGGAGAGGGTCGCCT 60.685 66.667 0.00 0.00 42.26 5.52
329 330 2.683933 TCCTTGGAGAGGGTCGCC 60.684 66.667 0.00 0.00 46.31 5.54
330 331 2.896443 CTCCTTGGAGAGGGTCGC 59.104 66.667 11.02 0.00 46.31 5.19
336 337 3.474570 CCCCGCCTCCTTGGAGAG 61.475 72.222 17.55 10.77 37.90 3.20
351 352 4.864334 CATGTCCCCTCGCAGCCC 62.864 72.222 0.00 0.00 0.00 5.19
352 353 4.864334 CCATGTCCCCTCGCAGCC 62.864 72.222 0.00 0.00 0.00 4.85
354 355 4.100084 TGCCATGTCCCCTCGCAG 62.100 66.667 0.00 0.00 0.00 5.18
355 356 4.100084 CTGCCATGTCCCCTCGCA 62.100 66.667 0.00 0.00 0.00 5.10
357 358 4.864334 GGCTGCCATGTCCCCTCG 62.864 72.222 15.17 0.00 0.00 4.63
358 359 4.864334 CGGCTGCCATGTCCCCTC 62.864 72.222 20.29 0.00 0.00 4.30
381 382 3.775654 CTCCACCGGCCCTGTCTC 61.776 72.222 0.00 0.00 0.00 3.36
382 383 4.316823 TCTCCACCGGCCCTGTCT 62.317 66.667 0.00 0.00 0.00 3.41
383 384 4.083862 GTCTCCACCGGCCCTGTC 62.084 72.222 0.00 0.00 0.00 3.51
392 393 3.775654 CCGGCTGAGGTCTCCACC 61.776 72.222 0.00 0.00 44.19 4.61
393 394 3.775654 CCCGGCTGAGGTCTCCAC 61.776 72.222 0.00 0.00 0.00 4.02
394 395 4.316823 ACCCGGCTGAGGTCTCCA 62.317 66.667 0.00 0.00 28.99 3.86
395 396 3.775654 CACCCGGCTGAGGTCTCC 61.776 72.222 0.00 0.00 34.56 3.71
396 397 3.775654 CCACCCGGCTGAGGTCTC 61.776 72.222 0.00 0.00 34.56 3.36
465 466 3.541713 CTCCTAGCGTGCTCCCCC 61.542 72.222 0.00 0.00 0.00 5.40
466 467 2.442272 TCTCCTAGCGTGCTCCCC 60.442 66.667 0.00 0.00 0.00 4.81
467 468 3.124686 CTCTCCTAGCGTGCTCCC 58.875 66.667 0.00 0.00 0.00 4.30
468 469 2.415426 GCTCTCCTAGCGTGCTCC 59.585 66.667 0.00 0.00 42.53 4.70
489 490 3.684305 TGATACAACACATCTTTGCGGAG 59.316 43.478 0.00 0.00 0.00 4.63
490 491 3.669536 TGATACAACACATCTTTGCGGA 58.330 40.909 0.00 0.00 0.00 5.54
491 492 4.621068 ATGATACAACACATCTTTGCGG 57.379 40.909 0.00 0.00 0.00 5.69
492 493 6.932901 AAAATGATACAACACATCTTTGCG 57.067 33.333 0.00 0.00 0.00 4.85
557 558 3.059166 GCCGCATTTCAAATGTTTGTCT 58.941 40.909 11.80 0.00 39.18 3.41
582 583 0.322366 TCCATTGATGCGCTCAACCA 60.322 50.000 19.72 8.04 46.37 3.67
596 597 2.418628 CGTTTGCGGTCACTTATCCATT 59.581 45.455 0.00 0.00 0.00 3.16
598 599 1.434555 CGTTTGCGGTCACTTATCCA 58.565 50.000 0.00 0.00 0.00 3.41
624 625 3.248495 TGCATCGGTAAAACGGATACA 57.752 42.857 0.51 0.00 36.23 2.29
627 628 3.481112 GTTTGCATCGGTAAAACGGAT 57.519 42.857 0.00 0.00 38.48 4.18
641 642 0.462225 TCGGTTTCTGTCCGTTTGCA 60.462 50.000 4.36 0.00 46.86 4.08
659 660 7.513505 CGACCGCAAATGATATGAATTTTGTTC 60.514 37.037 0.00 0.00 32.88 3.18
668 669 1.597195 GCACGACCGCAAATGATATGA 59.403 47.619 0.00 0.00 0.00 2.15
701 702 8.804688 AAGCGCAAATACAAAATTACTACAAA 57.195 26.923 11.47 0.00 0.00 2.83
704 705 7.164204 GCAAAGCGCAAATACAAAATTACTAC 58.836 34.615 11.47 0.00 41.79 2.73
708 709 5.233988 AGGCAAAGCGCAAATACAAAATTA 58.766 33.333 11.47 0.00 45.17 1.40
709 710 4.064388 AGGCAAAGCGCAAATACAAAATT 58.936 34.783 11.47 0.00 45.17 1.82
711 712 3.056304 GAGGCAAAGCGCAAATACAAAA 58.944 40.909 11.47 0.00 45.17 2.44
743 744 7.075741 CCTAAAACGCAGCAACATATAATACC 58.924 38.462 0.00 0.00 0.00 2.73
784 785 0.029300 GAGCAGCTCTAGCAGAGTCG 59.971 60.000 15.78 7.09 44.12 4.18
851 852 7.938140 TCAGAATCCAATTTTACGGAGAAAT 57.062 32.000 0.00 0.00 33.97 2.17
898 899 4.521062 CTGCTTCTCTCGGCCGGG 62.521 72.222 27.83 25.23 0.00 5.73
941 942 2.865308 CGTGAGGCGACGACTACA 59.135 61.111 1.37 0.22 44.77 2.74
1044 1045 3.319198 GAGGGGAAGCCGTGGTGA 61.319 66.667 0.00 0.00 0.00 4.02
1098 1099 0.178958 AGGCCCGGATAGTGTAGGAG 60.179 60.000 0.73 0.00 0.00 3.69
1251 1252 4.704103 AGCCTCGTGAGCCTCCCA 62.704 66.667 0.00 0.00 0.00 4.37
1377 1378 4.814294 ATGAAGGCGTCGACGGGC 62.814 66.667 36.13 27.51 40.23 6.13
1637 1638 0.251121 TGGAACACACCATTCGGCAT 60.251 50.000 0.00 0.00 34.77 4.40
1638 1639 0.251121 ATGGAACACACCATTCGGCA 60.251 50.000 0.00 0.00 47.00 5.69
1646 1647 9.625646 TGGTACAACTGATAGATGGAACACACC 62.626 44.444 0.00 0.00 36.40 4.16
1872 1873 2.289631 TGATCGGCATGTCAAAGTCTGT 60.290 45.455 0.00 0.00 0.00 3.41
1998 1999 2.773918 CCCCTAGGGCAGCCATCA 60.774 66.667 23.84 0.00 35.35 3.07
2163 2164 2.991250 TGCTCAAAGATAGTCTTGCCC 58.009 47.619 0.00 0.00 36.71 5.36
2310 2311 4.821805 TCTCATTCTGAAACCTGAAACCAC 59.178 41.667 0.00 0.00 0.00 4.16
2318 2319 5.559148 ACTCAAGTCTCATTCTGAAACCT 57.441 39.130 0.00 0.00 0.00 3.50
2329 2330 4.594920 AGAAGGGATTGAACTCAAGTCTCA 59.405 41.667 0.00 0.00 39.47 3.27
2382 2383 7.280428 TGAATTGTCTAAAGTTACGAAACACCA 59.720 33.333 0.00 0.00 38.12 4.17
2486 2487 7.308435 CCTGCCAAACTCTAGTTTATTTTCTG 58.692 38.462 7.73 0.00 45.54 3.02
2978 3788 7.615403 TCTCATTTCAAGTAACTAGATGCTGT 58.385 34.615 0.00 0.00 0.00 4.40
3074 3970 6.015180 ACTCTTTATGCATTCATGGTTGTGTT 60.015 34.615 3.54 0.00 34.22 3.32
3164 4427 1.021390 GCTCCGTCACTGGACATTGG 61.021 60.000 0.00 0.00 44.54 3.16
3165 4428 1.021390 GGCTCCGTCACTGGACATTG 61.021 60.000 0.00 0.00 44.54 2.82
3166 4429 1.296715 GGCTCCGTCACTGGACATT 59.703 57.895 0.00 0.00 44.54 2.71
3167 4430 1.892819 CTGGCTCCGTCACTGGACAT 61.893 60.000 0.00 0.00 44.54 3.06
3168 4431 2.523168 TGGCTCCGTCACTGGACA 60.523 61.111 0.00 0.00 44.54 4.02
3169 4432 2.262915 CTGGCTCCGTCACTGGAC 59.737 66.667 0.00 0.00 40.77 4.02
3170 4433 2.997315 CCTGGCTCCGTCACTGGA 60.997 66.667 0.00 0.00 36.37 3.86
3438 4701 1.679977 CAGGGTGACATTGGCAGGG 60.680 63.158 0.00 0.00 0.00 4.45
3439 4702 1.679977 CCAGGGTGACATTGGCAGG 60.680 63.158 0.00 0.00 31.12 4.85
3440 4703 4.007457 CCAGGGTGACATTGGCAG 57.993 61.111 0.00 0.00 31.12 4.85
4157 5427 3.388024 TGTAGTTGTCAGTCTTTGGCTCT 59.612 43.478 0.00 0.00 30.85 4.09
4800 7092 1.865865 CCCATACGTACTCATGTGCC 58.134 55.000 0.00 0.00 0.00 5.01
5246 12595 2.200955 GGAGATTGGGAAAGAGAGGGT 58.799 52.381 0.00 0.00 0.00 4.34
5463 14770 3.385749 CTAACCGTGATGGGCGCCT 62.386 63.158 28.56 7.30 44.64 5.52
6093 15694 1.336440 CAAACATGAGCGGGTGAAACA 59.664 47.619 0.00 0.00 39.98 2.83
6185 15786 6.408092 GGTGTAACATCCAGAATCATCAGGTA 60.408 42.308 0.00 0.00 39.98 3.08
6211 15812 6.769134 TTCTGGTTCTGAGTATACGAATCA 57.231 37.500 0.00 1.47 0.00 2.57
6333 15934 8.982723 TCTTTAGAGATAAGCAACCATCTAACT 58.017 33.333 0.00 0.00 31.63 2.24
6338 15939 9.771534 AACTATCTTTAGAGATAAGCAACCATC 57.228 33.333 4.67 0.00 42.71 3.51
6355 15956 8.870075 AACATTAGGAGAAGCAAACTATCTTT 57.130 30.769 0.00 0.00 0.00 2.52
6421 16025 4.762251 AGATGTCAACTTTTGGAGCCTTAC 59.238 41.667 0.00 0.00 0.00 2.34
6619 16223 5.241949 ACAAAACGAACCTTATATTGCCACA 59.758 36.000 0.00 0.00 0.00 4.17
6620 16224 5.571357 CACAAAACGAACCTTATATTGCCAC 59.429 40.000 0.00 0.00 0.00 5.01
6636 16240 4.378046 GCTGACCAGGTTATACACAAAACG 60.378 45.833 0.00 0.00 0.00 3.60
6691 16295 6.920817 TCACGTCACTCTAGTGTCATAATTT 58.079 36.000 9.81 0.00 45.76 1.82
6704 16308 9.052759 ACTGTAAAAATAAAATCACGTCACTCT 57.947 29.630 0.00 0.00 0.00 3.24
6861 16465 2.100916 CCGTCCTTGTATACACCTCCAG 59.899 54.545 4.68 0.00 0.00 3.86
6882 16486 0.392998 ATCCATGAGTTCCACCACGC 60.393 55.000 0.00 0.00 0.00 5.34
6896 16500 9.627123 TTCTAATCATTTTAACGGAAGATCCAT 57.373 29.630 0.00 0.00 35.91 3.41
6948 16552 5.948992 AACAGAAGAATCAAAGGCACTAC 57.051 39.130 0.00 0.00 38.49 2.73
6980 16584 6.772233 CAGGTGTGGACAATTTGGATATATCA 59.228 38.462 14.60 0.00 0.00 2.15
7014 16618 6.352394 CCAAAATTCTTGATGATGGGGAACAT 60.352 38.462 0.00 0.00 44.18 2.71
7025 16629 7.490402 GCCTATCTGTTTCCAAAATTCTTGATG 59.510 37.037 3.00 0.00 0.00 3.07
7026 16630 7.364144 GGCCTATCTGTTTCCAAAATTCTTGAT 60.364 37.037 0.00 0.00 0.00 2.57
7027 16631 6.071391 GGCCTATCTGTTTCCAAAATTCTTGA 60.071 38.462 0.00 0.00 0.00 3.02
7069 16673 6.409704 AGAAAACGGGACTTAGGGTAAATAC 58.590 40.000 0.00 0.00 0.00 1.89
7072 16676 4.263025 GGAGAAAACGGGACTTAGGGTAAA 60.263 45.833 0.00 0.00 0.00 2.01
7075 16679 1.627329 GGAGAAAACGGGACTTAGGGT 59.373 52.381 0.00 0.00 0.00 4.34
7078 16682 5.122396 CAGATTTGGAGAAAACGGGACTTAG 59.878 44.000 0.00 0.00 0.00 2.18
7079 16683 5.001232 CAGATTTGGAGAAAACGGGACTTA 58.999 41.667 0.00 0.00 0.00 2.24
7080 16684 3.821033 CAGATTTGGAGAAAACGGGACTT 59.179 43.478 0.00 0.00 0.00 3.01
7081 16685 3.412386 CAGATTTGGAGAAAACGGGACT 58.588 45.455 0.00 0.00 0.00 3.85
7082 16686 2.095212 GCAGATTTGGAGAAAACGGGAC 60.095 50.000 0.00 0.00 0.00 4.46
7084 16688 1.885887 TGCAGATTTGGAGAAAACGGG 59.114 47.619 0.00 0.00 0.00 5.28
7085 16689 3.855689 ATGCAGATTTGGAGAAAACGG 57.144 42.857 0.00 0.00 0.00 4.44
7086 16690 5.922544 AGAAAATGCAGATTTGGAGAAAACG 59.077 36.000 5.10 0.00 31.83 3.60
7087 16691 7.062722 GCTAGAAAATGCAGATTTGGAGAAAAC 59.937 37.037 5.10 0.00 31.83 2.43
7088 16692 7.092716 GCTAGAAAATGCAGATTTGGAGAAAA 58.907 34.615 5.10 0.00 31.83 2.29
7114 16718 3.942829 TGAATGAACCTGATCAGTGACC 58.057 45.455 21.11 8.08 31.76 4.02
7123 16727 4.233632 TGCATGGTATGAATGAACCTGA 57.766 40.909 0.00 0.00 36.67 3.86
7168 16772 5.071519 AGGGATTGTGATTCAGTAGGATCAG 59.928 44.000 0.00 0.00 0.00 2.90
7263 16867 2.733956 ACCATGGCAATTTGGTACGAT 58.266 42.857 13.04 0.00 44.36 3.73
7274 16878 8.415553 CAGATTTGAAGATAAATACCATGGCAA 58.584 33.333 13.04 0.00 30.78 4.52
7408 17013 0.249489 GCCGTGAGAGTGTTCACTGT 60.249 55.000 10.29 6.25 44.13 3.55
7500 17105 2.100584 GAGTGTCTACCATGGCTCAGAG 59.899 54.545 13.04 1.66 0.00 3.35
7630 17235 1.003355 ATGTGAGAACGGCACCAGG 60.003 57.895 0.00 0.00 35.43 4.45
7666 17271 9.871238 AGACTACAAATTGATACGAGTTAATGT 57.129 29.630 0.00 0.00 0.00 2.71
7686 17332 6.643770 TCGGTGAACATAACTGAAAAGACTAC 59.356 38.462 0.00 0.00 29.97 2.73
7730 17376 7.803724 ACTTTTCGAGTTTACATCAATGGTAC 58.196 34.615 0.00 0.00 33.92 3.34
7731 17377 7.972832 ACTTTTCGAGTTTACATCAATGGTA 57.027 32.000 0.00 0.00 33.92 3.25
7776 17423 4.090761 TCCTTGAATCTTCTGCAAGTGT 57.909 40.909 0.00 0.00 37.82 3.55
7781 17428 7.187824 AGTAGTATTCCTTGAATCTTCTGCA 57.812 36.000 0.00 0.00 33.95 4.41
7815 17463 5.741011 TCCCTATGACTGTGTTTGGATTAC 58.259 41.667 0.00 0.00 0.00 1.89
7825 17473 4.655762 TTCTTCGATCCCTATGACTGTG 57.344 45.455 0.00 0.00 0.00 3.66
7914 17566 4.080129 AGAGTTCATCCGGTGGTACTAGTA 60.080 45.833 0.00 0.00 0.00 1.82
7986 17638 5.473931 TCAGTGATCAGTTTGCTCTTCTAC 58.526 41.667 0.00 0.00 0.00 2.59
8315 17967 1.858505 GGACCCCCTTTCCAGGTTT 59.141 57.895 0.00 0.00 38.79 3.27
8413 18065 0.325933 TGTCCTGCAACCTGATCCTG 59.674 55.000 0.00 0.00 0.00 3.86
8415 18067 0.036732 TGTGTCCTGCAACCTGATCC 59.963 55.000 0.00 0.00 0.00 3.36
8436 18090 2.244695 TGATTACTCACAGGGTCGTGT 58.755 47.619 0.00 0.00 38.12 4.49
8447 18101 5.182487 ACTTGTGTTGTGTGTGATTACTCA 58.818 37.500 0.00 0.00 0.00 3.41
8449 18103 5.233476 CGTACTTGTGTTGTGTGTGATTACT 59.767 40.000 0.00 0.00 0.00 2.24
8450 18104 5.428770 CGTACTTGTGTTGTGTGTGATTAC 58.571 41.667 0.00 0.00 0.00 1.89
8451 18105 4.025563 GCGTACTTGTGTTGTGTGTGATTA 60.026 41.667 0.00 0.00 0.00 1.75
8452 18106 3.242608 GCGTACTTGTGTTGTGTGTGATT 60.243 43.478 0.00 0.00 0.00 2.57
8475 18129 1.817911 TACCATGTCACCAACGGCGA 61.818 55.000 16.62 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.