Multiple sequence alignment - TraesCS3A01G186600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G186600 chr3A 100.000 3697 0 0 766 4462 221667628 221671324 0.000000e+00 6828.0
1 TraesCS3A01G186600 chr3A 100.000 450 0 0 1 450 221666863 221667312 0.000000e+00 832.0
2 TraesCS3A01G186600 chr3A 86.284 802 55 22 3705 4462 691301204 691301994 0.000000e+00 821.0
3 TraesCS3A01G186600 chr3A 80.474 548 55 21 3963 4462 746410056 746409513 5.450000e-99 372.0
4 TraesCS3A01G186600 chr3A 81.203 266 25 14 3708 3951 624184534 624184272 1.640000e-44 191.0
5 TraesCS3A01G186600 chr3A 87.209 172 12 6 805 975 599781060 599780898 2.120000e-43 187.0
6 TraesCS3A01G186600 chr3B 97.010 1739 40 5 1732 3470 257211125 257212851 0.000000e+00 2913.0
7 TraesCS3A01G186600 chr3B 95.751 965 30 2 766 1730 257210075 257211028 0.000000e+00 1544.0
8 TraesCS3A01G186600 chr3B 86.265 415 36 13 41 444 257209607 257210011 8.870000e-117 431.0
9 TraesCS3A01G186600 chr3B 93.852 244 15 0 3467 3710 257212884 257213127 7.050000e-98 368.0
10 TraesCS3A01G186600 chr3B 87.379 206 25 1 1921 2125 706219749 706219544 7.460000e-58 235.0
11 TraesCS3A01G186600 chr3B 86.893 206 26 1 1921 2125 47697194 47696989 3.470000e-56 230.0
12 TraesCS3A01G186600 chr3B 86.893 206 26 1 1921 2125 47702331 47702126 3.470000e-56 230.0
13 TraesCS3A01G186600 chr3B 86.893 206 26 1 1921 2125 47770192 47769987 3.470000e-56 230.0
14 TraesCS3A01G186600 chr3D 94.238 1562 63 13 1918 3470 179084432 179085975 0.000000e+00 2361.0
15 TraesCS3A01G186600 chr3D 96.768 1114 29 3 766 1878 179083342 179084449 0.000000e+00 1851.0
16 TraesCS3A01G186600 chr3D 89.934 457 26 11 1 444 179082836 179083285 5.010000e-159 571.0
17 TraesCS3A01G186600 chr3D 95.092 163 8 0 3467 3629 179086008 179086170 1.590000e-64 257.0
18 TraesCS3A01G186600 chr3D 100.000 81 0 0 976 1056 196981129 196981049 2.780000e-32 150.0
19 TraesCS3A01G186600 chr3D 96.610 59 2 0 812 870 196981181 196981123 1.020000e-16 99.0
20 TraesCS3A01G186600 chr2D 85.494 1558 132 30 814 2352 469922035 469920553 0.000000e+00 1539.0
21 TraesCS3A01G186600 chr2D 88.235 204 23 1 1923 2125 68868784 68868581 4.460000e-60 243.0
22 TraesCS3A01G186600 chr7B 87.565 957 84 16 805 1759 699039596 699040519 0.000000e+00 1075.0
23 TraesCS3A01G186600 chr5B 87.234 799 56 16 3708 4462 463234823 463234027 0.000000e+00 869.0
24 TraesCS3A01G186600 chr5B 84.005 769 69 29 3736 4462 171735226 171735982 0.000000e+00 689.0
25 TraesCS3A01G186600 chr5B 87.912 546 48 12 3710 4239 529365676 529366219 1.050000e-175 627.0
26 TraesCS3A01G186600 chr5B 85.798 514 62 8 1616 2125 684374374 684373868 6.570000e-148 534.0
27 TraesCS3A01G186600 chr5B 92.308 234 18 0 4229 4462 529371560 529371793 2.570000e-87 333.0
28 TraesCS3A01G186600 chr5B 86.893 206 26 1 1921 2125 143730709 143730914 3.470000e-56 230.0
29 TraesCS3A01G186600 chr1A 86.869 792 58 18 3708 4462 8686424 8685642 0.000000e+00 845.0
30 TraesCS3A01G186600 chr1A 80.987 547 54 17 3963 4462 535341565 535341022 5.410000e-104 388.0
31 TraesCS3A01G186600 chr5A 86.216 798 56 16 3708 4462 260673443 260672657 0.000000e+00 815.0
32 TraesCS3A01G186600 chr6D 83.678 435 41 11 4054 4462 435533179 435532749 2.520000e-102 383.0
33 TraesCS3A01G186600 chr6D 78.400 250 25 20 3723 3950 435533650 435533408 7.790000e-28 135.0
34 TraesCS3A01G186600 chr7D 83.488 430 45 10 4054 4459 41795608 41796035 1.170000e-100 377.0
35 TraesCS3A01G186600 chr7D 90.411 73 6 1 3993 4064 41795525 41795597 1.320000e-15 95.3
36 TraesCS3A01G186600 chr1B 78.755 466 67 16 4025 4462 314557625 314558086 2.630000e-72 283.0
37 TraesCS3A01G186600 chr4A 79.401 267 28 16 3708 3951 594718683 594718945 3.570000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G186600 chr3A 221666863 221671324 4461 False 3830.00 6828 100.0000 1 4462 2 chr3A.!!$F2 4461
1 TraesCS3A01G186600 chr3A 691301204 691301994 790 False 821.00 821 86.2840 3705 4462 1 chr3A.!!$F1 757
2 TraesCS3A01G186600 chr3A 746409513 746410056 543 True 372.00 372 80.4740 3963 4462 1 chr3A.!!$R3 499
3 TraesCS3A01G186600 chr3B 257209607 257213127 3520 False 1314.00 2913 93.2195 41 3710 4 chr3B.!!$F1 3669
4 TraesCS3A01G186600 chr3D 179082836 179086170 3334 False 1260.00 2361 94.0080 1 3629 4 chr3D.!!$F1 3628
5 TraesCS3A01G186600 chr2D 469920553 469922035 1482 True 1539.00 1539 85.4940 814 2352 1 chr2D.!!$R2 1538
6 TraesCS3A01G186600 chr7B 699039596 699040519 923 False 1075.00 1075 87.5650 805 1759 1 chr7B.!!$F1 954
7 TraesCS3A01G186600 chr5B 463234027 463234823 796 True 869.00 869 87.2340 3708 4462 1 chr5B.!!$R1 754
8 TraesCS3A01G186600 chr5B 171735226 171735982 756 False 689.00 689 84.0050 3736 4462 1 chr5B.!!$F2 726
9 TraesCS3A01G186600 chr5B 529365676 529366219 543 False 627.00 627 87.9120 3710 4239 1 chr5B.!!$F3 529
10 TraesCS3A01G186600 chr5B 684373868 684374374 506 True 534.00 534 85.7980 1616 2125 1 chr5B.!!$R2 509
11 TraesCS3A01G186600 chr1A 8685642 8686424 782 True 845.00 845 86.8690 3708 4462 1 chr1A.!!$R1 754
12 TraesCS3A01G186600 chr1A 535341022 535341565 543 True 388.00 388 80.9870 3963 4462 1 chr1A.!!$R2 499
13 TraesCS3A01G186600 chr5A 260672657 260673443 786 True 815.00 815 86.2160 3708 4462 1 chr5A.!!$R1 754
14 TraesCS3A01G186600 chr6D 435532749 435533650 901 True 259.00 383 81.0390 3723 4462 2 chr6D.!!$R1 739
15 TraesCS3A01G186600 chr7D 41795525 41796035 510 False 236.15 377 86.9495 3993 4459 2 chr7D.!!$F1 466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 471 0.389948 AGTCACTTCGGTCGGAATGC 60.390 55.000 0.00 0.00 33.26 3.56 F
803 826 1.528542 CCCATCAGGCTGGCATCTG 60.529 63.158 15.73 10.56 34.77 2.90 F
2489 2637 1.071385 GTCTCTGGCCCACTATCATGG 59.929 57.143 0.00 0.00 39.71 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1381 0.032130 TGACTGTCTCACGCTTGGTC 59.968 55.0 9.51 0.0 0.0 4.02 R
2730 2885 0.183014 CCAGGCCTACTAGTCTCGGA 59.817 60.0 3.98 0.0 0.0 4.55 R
3869 4104 0.250901 ACCATGACAAGGACCAGCAC 60.251 55.0 3.17 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.760077 AGAGAATGTTATACGGACGAAAATATT 57.240 29.630 0.00 0.31 0.00 1.28
78 79 3.931907 AATCCCGTGATTCATGGAAGA 57.068 42.857 23.85 14.61 42.73 2.87
79 80 4.443978 AATCCCGTGATTCATGGAAGAT 57.556 40.909 23.85 16.01 42.73 2.40
90 91 6.426025 TGATTCATGGAAGATAGCGATTTCAG 59.574 38.462 0.00 0.00 0.00 3.02
114 115 3.065655 GCATAAGAGCTGGCTATCACAG 58.934 50.000 0.00 0.00 38.95 3.66
163 165 6.163476 GGCCTAAATTTCGTTTTCCTTTCAT 58.837 36.000 0.00 0.00 0.00 2.57
202 205 7.136289 GGTTAAATCAAACCATCGTTGACTA 57.864 36.000 0.94 0.00 46.85 2.59
205 208 6.817765 AAATCAAACCATCGTTGACTACAT 57.182 33.333 0.00 0.00 30.72 2.29
209 212 1.277842 ACCATCGTTGACTACATGGCA 59.722 47.619 13.92 0.00 38.19 4.92
210 213 2.290008 ACCATCGTTGACTACATGGCAA 60.290 45.455 13.92 0.00 42.29 4.52
211 214 2.945008 CCATCGTTGACTACATGGCAAT 59.055 45.455 0.00 0.00 46.64 3.56
214 217 5.239306 CCATCGTTGACTACATGGCAATAAT 59.761 40.000 0.00 0.00 46.64 1.28
416 439 4.026052 AGATCAAAAATCCCCTCGCAAAT 58.974 39.130 0.00 0.00 0.00 2.32
417 440 4.467438 AGATCAAAAATCCCCTCGCAAATT 59.533 37.500 0.00 0.00 0.00 1.82
418 441 5.656416 AGATCAAAAATCCCCTCGCAAATTA 59.344 36.000 0.00 0.00 0.00 1.40
444 467 1.446907 GTAGAGTCACTTCGGTCGGA 58.553 55.000 0.00 0.00 0.00 4.55
445 468 1.808945 GTAGAGTCACTTCGGTCGGAA 59.191 52.381 0.00 0.00 0.00 4.30
446 469 1.546961 AGAGTCACTTCGGTCGGAAT 58.453 50.000 0.00 0.00 33.26 3.01
447 470 1.202582 AGAGTCACTTCGGTCGGAATG 59.797 52.381 0.00 0.00 33.26 2.67
448 471 0.389948 AGTCACTTCGGTCGGAATGC 60.390 55.000 0.00 0.00 33.26 3.56
803 826 1.528542 CCCATCAGGCTGGCATCTG 60.529 63.158 15.73 10.56 34.77 2.90
1166 1191 2.190981 GTATCTAGGCAAACACGGTCG 58.809 52.381 0.00 0.00 0.00 4.79
1171 1196 2.247267 GCAAACACGGTCGGTTCG 59.753 61.111 0.00 0.00 0.00 3.95
1292 1319 6.110411 ACTTTCAAGATCGGTTTTAGGAGA 57.890 37.500 0.00 0.00 0.00 3.71
1293 1320 6.166982 ACTTTCAAGATCGGTTTTAGGAGAG 58.833 40.000 0.00 0.00 0.00 3.20
1351 1381 3.618150 GGATTGTTTCCAATGCGGATTTG 59.382 43.478 0.00 0.00 45.80 2.32
1365 1395 1.464997 GGATTTGACCAAGCGTGAGAC 59.535 52.381 0.00 0.00 0.00 3.36
1611 1644 5.637006 TTAAATATCAGGCACACACAACC 57.363 39.130 0.00 0.00 0.00 3.77
1665 1698 7.234166 ACATTGATCTTCAATCCCTGTTTCTTT 59.766 33.333 0.00 0.00 43.03 2.52
1730 1763 3.200825 AGTCCATGTAGATTGGAAGGGTG 59.799 47.826 0.00 0.00 44.62 4.61
1731 1764 2.509548 TCCATGTAGATTGGAAGGGTGG 59.490 50.000 0.00 0.00 40.29 4.61
1781 1909 7.916977 TGACTGTTTCATCAATTAGCATATTGC 59.083 33.333 6.06 0.00 45.46 3.56
1969 2106 8.429641 TGTATGATCTATCTAAACCTTTGTCCC 58.570 37.037 0.00 0.00 0.00 4.46
2095 2235 8.344098 CACAAATAACAGTTCAATGGCAATTTT 58.656 29.630 0.00 0.00 0.00 1.82
2129 2269 3.615155 GGAAGAAGACATTTGGAGGAGG 58.385 50.000 0.00 0.00 0.00 4.30
2263 2403 6.210522 AGGGTTAGATACAGGGTGATAACTT 58.789 40.000 0.00 0.00 0.00 2.66
2345 2493 5.428253 TGTGGCTATACCTGATTCTTTGAC 58.572 41.667 0.00 0.00 40.22 3.18
2374 2522 9.543783 AGTTAAAGGTTTCTAGTTCTACAAGTG 57.456 33.333 0.00 0.00 0.00 3.16
2489 2637 1.071385 GTCTCTGGCCCACTATCATGG 59.929 57.143 0.00 0.00 39.71 3.66
2646 2801 6.538742 TGTCAGCTATCTATTTTTGTGCTACC 59.461 38.462 0.00 0.00 0.00 3.18
2730 2885 1.211457 CTGCCTGCCTACTGAAATCCT 59.789 52.381 0.00 0.00 0.00 3.24
2770 2925 1.072505 ACTGGTGGCAACTAACCGG 59.927 57.895 3.27 0.00 46.56 5.28
2801 2956 7.369607 TGAAAACAATGTCCTTCATGTGTATG 58.630 34.615 6.73 0.00 36.81 2.39
3022 3177 8.668510 AATTTTGCTAGGACACAGTATGATAG 57.331 34.615 0.00 0.00 39.69 2.08
3024 3179 6.392625 TTGCTAGGACACAGTATGATAGTC 57.607 41.667 0.00 0.00 39.69 2.59
3064 3219 7.209475 GGCTTTCCATTTGCATAGCTTTTATA 58.791 34.615 0.00 0.00 0.00 0.98
3137 3292 4.712122 TGCGATATGACTACTGTGTGAA 57.288 40.909 0.00 0.00 0.00 3.18
3158 3313 3.788227 TGTATGTTCTGCTTCCTGGTT 57.212 42.857 0.00 0.00 0.00 3.67
3269 3424 8.510243 TTTGTATGTAAGATGATTGTGCTGAT 57.490 30.769 0.00 0.00 0.00 2.90
3274 3429 7.312657 TGTAAGATGATTGTGCTGATTCTTC 57.687 36.000 0.00 0.00 0.00 2.87
3506 3697 1.612726 GCCATTGCTCTCTGAACCTGT 60.613 52.381 0.00 0.00 33.53 4.00
3577 3768 5.784177 CACTGTGTATCAGACTTTGTACCT 58.216 41.667 0.00 0.00 46.27 3.08
3632 3823 4.946784 ACTTGCCGAACAATGATAGTTC 57.053 40.909 0.00 0.00 41.41 3.01
3638 3829 4.122776 CCGAACAATGATAGTTCCCAGAG 58.877 47.826 0.00 0.00 41.72 3.35
3655 3846 3.069586 CCAGAGAGTATCGCAATTACCCA 59.930 47.826 0.00 0.00 42.67 4.51
3656 3847 4.442893 CCAGAGAGTATCGCAATTACCCAA 60.443 45.833 0.00 0.00 42.67 4.12
3665 3856 4.363999 TCGCAATTACCCAAAAGTTTGTG 58.636 39.130 3.26 0.00 36.45 3.33
3693 3884 1.141053 AGGAATTCCCGTATGGTCTGC 59.859 52.381 21.22 0.00 40.87 4.26
3742 3933 6.444633 TCTTCTTCTTTCGTCAGACGTATTT 58.555 36.000 22.16 0.00 43.14 1.40
3819 4016 2.126580 GTACCGCTCGACGCACTT 60.127 61.111 7.47 0.00 41.76 3.16
3976 4302 0.175302 CTGCAGTCAGAGTGCCTAGG 59.825 60.000 24.76 3.67 43.71 3.02
4093 4479 3.090037 AGCATTTGAGAGCTCTGCAATT 58.910 40.909 23.91 16.71 36.00 2.32
4112 4499 7.928103 TGCAATTGTTGAAGCACAAAATTATT 58.072 26.923 7.40 0.00 40.07 1.40
4257 4672 1.016627 CATCGAACGGCATTGGATGT 58.983 50.000 9.69 0.00 44.38 3.06
4325 4745 3.118775 CCTTGTAGCACATACACCAGCTA 60.119 47.826 0.00 0.00 44.14 3.32
4366 4786 1.001815 CGGTTCCAGCAAACAACGAAT 60.002 47.619 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 7.894376 TTTTCGTCCGTATAACATTCTCTTT 57.106 32.000 0.00 0.00 0.00 2.52
17 18 9.760077 AATATTTTCGTCCGTATAACATTCTCT 57.240 29.630 0.00 0.00 0.00 3.10
30 31 5.050972 GCCTCTAGTCAAATATTTTCGTCCG 60.051 44.000 0.00 0.00 0.00 4.79
43 44 2.168521 CGGGATTCAAGCCTCTAGTCAA 59.831 50.000 0.00 0.00 0.00 3.18
78 79 5.407995 GCTCTTATGCTTCTGAAATCGCTAT 59.592 40.000 2.46 0.00 0.00 2.97
79 80 4.747108 GCTCTTATGCTTCTGAAATCGCTA 59.253 41.667 2.46 0.00 0.00 4.26
90 91 3.745458 GTGATAGCCAGCTCTTATGCTTC 59.255 47.826 0.00 0.00 41.98 3.86
114 115 7.650903 CCATGAAAAGAAGCCTATAAATTCAGC 59.349 37.037 0.00 0.00 0.00 4.26
163 165 6.019748 TGATTTAACCAAATTTAGGCCTCCA 58.980 36.000 9.68 0.00 34.44 3.86
193 196 9.549078 TTATTATTATTGCCATGTAGTCAACGA 57.451 29.630 0.00 0.00 0.00 3.85
236 241 5.806654 AATTTCCAGCCAAAATAGTGTGT 57.193 34.783 0.00 0.00 0.00 3.72
416 439 4.940046 CCGAAGTGACTCTACCACTACTAA 59.060 45.833 0.00 0.00 43.42 2.24
417 440 4.019860 ACCGAAGTGACTCTACCACTACTA 60.020 45.833 0.00 0.00 43.42 1.82
418 441 3.244840 ACCGAAGTGACTCTACCACTACT 60.245 47.826 0.00 0.00 43.42 2.57
846 869 1.554392 CTGATTCGCGTGGAGAAGAG 58.446 55.000 5.77 0.00 0.00 2.85
1166 1191 1.130561 GCCAACAAGCTATGTCGAACC 59.869 52.381 0.00 0.00 42.99 3.62
1171 1196 0.370273 CGACGCCAACAAGCTATGTC 59.630 55.000 0.00 0.00 42.99 3.06
1292 1319 2.952310 GCCCTTAATTTGAGGCGAATCT 59.048 45.455 1.68 0.00 35.30 2.40
1293 1320 3.355626 GCCCTTAATTTGAGGCGAATC 57.644 47.619 1.68 0.00 35.30 2.52
1340 1370 0.171007 CGCTTGGTCAAATCCGCATT 59.829 50.000 0.00 0.00 0.00 3.56
1351 1381 0.032130 TGACTGTCTCACGCTTGGTC 59.968 55.000 9.51 0.00 0.00 4.02
1365 1395 0.612229 ACTGCCTGAGGTCATGACTG 59.388 55.000 24.50 12.39 0.00 3.51
1611 1644 1.808945 GGAGAAGATGTGCAACACCTG 59.191 52.381 0.00 0.00 42.71 4.00
1665 1698 4.882842 TTAGGCAGTCATGTCAACACTA 57.117 40.909 0.00 0.00 31.62 2.74
1730 1763 8.769891 CAAACAACAATGGGTTTATTTTCTACC 58.230 33.333 5.27 0.00 37.72 3.18
1731 1764 9.535878 TCAAACAACAATGGGTTTATTTTCTAC 57.464 29.630 5.27 0.00 37.72 2.59
1781 1909 5.102313 TCGAACACTCAATACAGCACATAG 58.898 41.667 0.00 0.00 0.00 2.23
1969 2106 2.031682 CACGGACAGCAAAGGAGAAAAG 60.032 50.000 0.00 0.00 0.00 2.27
2129 2269 6.628919 TCCAAGAAAACCTTAAAGCACTAC 57.371 37.500 0.00 0.00 32.86 2.73
2222 2362 4.664688 ACCCTCTGGATTCAAATCAAGT 57.335 40.909 6.95 0.00 37.65 3.16
2345 2493 8.807667 TGTAGAACTAGAAACCTTTAACTTCG 57.192 34.615 0.00 0.00 0.00 3.79
2489 2637 1.076727 CTCCCCCACTTCCCAAACC 59.923 63.158 0.00 0.00 0.00 3.27
2646 2801 5.237344 GTGGGCACTAAAGCATACTTCTATG 59.763 44.000 0.00 0.00 34.05 2.23
2730 2885 0.183014 CCAGGCCTACTAGTCTCGGA 59.817 60.000 3.98 0.00 0.00 4.55
3022 3177 2.076863 AGCCGAATTAGCAACACAGAC 58.923 47.619 3.03 0.00 0.00 3.51
3024 3179 3.492313 GAAAGCCGAATTAGCAACACAG 58.508 45.455 3.03 0.00 0.00 3.66
3064 3219 8.998277 TCAGAAAGTAGCTATCATAACTACCT 57.002 34.615 0.00 0.00 37.57 3.08
3137 3292 4.012374 CAACCAGGAAGCAGAACATACAT 58.988 43.478 0.00 0.00 0.00 2.29
3158 3313 0.320050 TACACGCAAGACCATCTGCA 59.680 50.000 0.00 0.00 43.62 4.41
3255 3410 6.485984 ACCATAGAAGAATCAGCACAATCATC 59.514 38.462 0.00 0.00 0.00 2.92
3269 3424 6.403527 CGCACAATTTCATCACCATAGAAGAA 60.404 38.462 0.00 0.00 0.00 2.52
3274 3429 4.333649 AGACGCACAATTTCATCACCATAG 59.666 41.667 0.00 0.00 0.00 2.23
3506 3697 6.270927 AGCTTGATATTGCTAGGGAAGTATCA 59.729 38.462 0.00 0.00 37.81 2.15
3577 3768 4.368315 CAGCCGATAACTACATGCAGTAA 58.632 43.478 0.00 0.00 30.92 2.24
3609 3800 5.353123 GGAACTATCATTGTTCGGCAAGTTA 59.647 40.000 5.97 0.00 43.21 2.24
3616 3807 4.122776 CTCTGGGAACTATCATTGTTCGG 58.877 47.826 5.97 0.53 43.21 4.30
3623 3814 4.461081 GCGATACTCTCTGGGAACTATCAT 59.539 45.833 0.00 0.00 0.00 2.45
3632 3823 3.555168 GGGTAATTGCGATACTCTCTGGG 60.555 52.174 0.00 0.00 0.00 4.45
3638 3829 5.813080 ACTTTTGGGTAATTGCGATACTC 57.187 39.130 0.00 0.00 0.00 2.59
3655 3846 3.030291 TCCTGCATGTCCACAAACTTTT 58.970 40.909 0.00 0.00 0.00 2.27
3656 3847 2.665165 TCCTGCATGTCCACAAACTTT 58.335 42.857 0.00 0.00 0.00 2.66
3665 3856 0.394352 ACGGGAATTCCTGCATGTCC 60.394 55.000 29.82 8.00 46.43 4.02
3869 4104 0.250901 ACCATGACAAGGACCAGCAC 60.251 55.000 3.17 0.00 0.00 4.40
3958 4283 0.251787 TCCTAGGCACTCTGACTGCA 60.252 55.000 2.96 0.00 35.73 4.41
3976 4302 5.971895 TTTGCTGCTTCTGATTTTTGTTC 57.028 34.783 0.00 0.00 0.00 3.18
4093 4479 6.276847 ACCGAAATAATTTTGTGCTTCAACA 58.723 32.000 0.00 0.00 35.61 3.33
4156 4545 5.635866 CGTTTTCTTTTTGCCAAACCAATT 58.364 33.333 0.00 0.00 0.00 2.32
4164 4553 2.478831 GGATGCGTTTTCTTTTTGCCA 58.521 42.857 0.00 0.00 0.00 4.92
4257 4672 0.898326 TCCAGCGGTGAAGAGTGCTA 60.898 55.000 17.83 0.00 35.56 3.49
4325 4745 3.128375 CCCCGTTTTGCTGCAACT 58.872 55.556 15.72 0.00 0.00 3.16
4366 4786 7.730672 TCCCCATTTGATTTTGATGAACATA 57.269 32.000 0.00 0.00 0.00 2.29
4411 4832 4.432712 CACCTTTTTGTTTTGCTACAGCT 58.567 39.130 2.44 0.00 42.66 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.