Multiple sequence alignment - TraesCS3A01G186400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G186400 chr3A 100.000 3593 0 0 1 3593 220889706 220886114 0.000000e+00 6636.0
1 TraesCS3A01G186400 chr3B 95.420 3013 117 14 3 2998 257040110 257037102 0.000000e+00 4780.0
2 TraesCS3A01G186400 chr3B 95.636 527 18 4 3070 3593 257037112 257036588 0.000000e+00 841.0
3 TraesCS3A01G186400 chr3B 96.970 33 1 0 3449 3481 257036766 257036734 5.010000e-04 56.5
4 TraesCS3A01G186400 chr3D 94.988 3033 112 20 1 2998 178594273 178591246 0.000000e+00 4723.0
5 TraesCS3A01G186400 chr3D 94.307 527 20 5 3070 3593 178591256 178590737 0.000000e+00 798.0
6 TraesCS3A01G186400 chr3D 100.000 33 0 0 3449 3481 178590915 178590883 1.080000e-05 62.1
7 TraesCS3A01G186400 chr7A 100.000 85 0 0 2987 3071 10085977 10086061 1.340000e-34 158.0
8 TraesCS3A01G186400 chr7A 92.929 99 6 1 2980 3078 13666804 13666901 3.740000e-30 143.0
9 TraesCS3A01G186400 chr6A 100.000 85 0 0 2987 3071 402951330 402951414 1.340000e-34 158.0
10 TraesCS3A01G186400 chrUn 86.861 137 18 0 3449 3585 28822558 28822422 1.730000e-33 154.0
11 TraesCS3A01G186400 chr1A 95.789 95 2 2 2978 3071 107481773 107481866 6.210000e-33 152.0
12 TraesCS3A01G186400 chr2A 96.703 91 2 1 2982 3071 453514370 453514280 2.230000e-32 150.0
13 TraesCS3A01G186400 chr2B 94.624 93 4 1 2982 3073 26846572 26846664 3.740000e-30 143.0
14 TraesCS3A01G186400 chr4A 93.684 95 5 1 2978 3071 607946151 607946057 1.340000e-29 141.0
15 TraesCS3A01G186400 chr4A 91.000 100 9 0 2972 3071 737710750 737710849 6.260000e-28 135.0
16 TraesCS3A01G186400 chr4A 78.378 111 24 0 3464 3574 1744680 1744790 4.980000e-09 73.1
17 TraesCS3A01G186400 chr5A 92.708 96 7 0 2978 3073 136398116 136398021 4.840000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G186400 chr3A 220886114 220889706 3592 True 6636.000000 6636 100.000000 1 3593 1 chr3A.!!$R1 3592
1 TraesCS3A01G186400 chr3B 257036588 257040110 3522 True 1892.500000 4780 96.008667 3 3593 3 chr3B.!!$R1 3590
2 TraesCS3A01G186400 chr3D 178590737 178594273 3536 True 1861.033333 4723 96.431667 1 3593 3 chr3D.!!$R1 3592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.176680 AAAACAACATTGCGGCCACA 59.823 45.0 2.24 0.0 0.00 4.17 F
689 715 0.321298 ACCAAACTTCCGTGGATCCG 60.321 55.0 7.39 0.0 38.36 4.18 F
944 978 0.755698 TCTATCTCCTGACGCCACCC 60.756 60.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 1831 0.599204 GAACCTGTGCCTCGAAACGA 60.599 55.0 0.00 0.0 0.00 3.85 R
1830 1867 1.191535 CCTCGGTGAATGTGGTAGGA 58.808 55.0 0.00 0.0 0.00 2.94 R
2938 2982 0.236449 CTTGGTAAACCGGTCGCAAC 59.764 55.0 8.04 3.6 39.43 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.326143 TGCTGGCTACATCACCCCTA 60.326 55.000 0.00 0.00 0.00 3.53
60 61 3.186047 CGTGGTCGTCGCCAATCC 61.186 66.667 9.50 0.00 40.68 3.01
67 68 1.141881 CGTCGCCAATCCTAGCAGT 59.858 57.895 0.00 0.00 0.00 4.40
128 129 0.176680 AAAACAACATTGCGGCCACA 59.823 45.000 2.24 0.00 0.00 4.17
129 130 0.529555 AAACAACATTGCGGCCACAC 60.530 50.000 2.24 0.00 0.00 3.82
130 131 2.428902 CAACATTGCGGCCACACG 60.429 61.111 2.24 0.00 0.00 4.49
201 205 1.538849 GCCACTGGTTCCAGCAAAAAG 60.539 52.381 17.55 3.19 37.57 2.27
203 207 2.430332 CCACTGGTTCCAGCAAAAAGAA 59.570 45.455 17.55 0.00 37.57 2.52
290 294 3.697747 GCTTGCAAGCCATGGCCA 61.698 61.111 36.21 21.01 46.20 5.36
297 301 0.899720 CAAGCCATGGCCACAGAAAT 59.100 50.000 33.14 9.27 43.17 2.17
305 309 0.388659 GGCCACAGAAATGCAACACA 59.611 50.000 0.00 0.00 0.00 3.72
314 318 3.633525 AGAAATGCAACACACAGACATGT 59.366 39.130 0.00 0.00 41.57 3.21
327 331 0.392998 GACATGTGGTTCCCAGCGAT 60.393 55.000 1.15 0.00 32.34 4.58
334 338 0.820891 GGTTCCCAGCGATGATGCAT 60.821 55.000 0.06 0.00 37.31 3.96
335 339 1.027357 GTTCCCAGCGATGATGCATT 58.973 50.000 0.06 0.00 37.31 3.56
396 400 4.631740 TCTGTGCGGTGGGGGAGA 62.632 66.667 0.00 0.00 0.00 3.71
461 467 4.957684 AGAAGAAAAGACGAGGGAAAGA 57.042 40.909 0.00 0.00 0.00 2.52
495 501 0.343372 TGAGGGGAAGAGGGCTATGT 59.657 55.000 0.00 0.00 0.00 2.29
535 542 1.144708 TGGTGCCTTGAAGTTGATGGA 59.855 47.619 0.00 0.00 0.00 3.41
548 555 2.124983 ATGGATTCTGCAGCGCGT 60.125 55.556 9.47 0.00 0.00 6.01
571 578 2.240612 GAATGCACAAGCGACCGACC 62.241 60.000 0.00 0.00 46.23 4.79
601 608 4.578516 TCGGCCAATTGATCGTATTGAATT 59.421 37.500 17.38 2.23 35.49 2.17
636 662 9.298774 ACTACAGTGTAAAAACGCTCTTATATC 57.701 33.333 4.21 0.00 0.00 1.63
646 672 3.191581 ACGCTCTTATATCATGAGACGGG 59.808 47.826 0.09 0.00 34.90 5.28
664 690 2.029623 GGGTGGAGTAGATCTTACGCA 58.970 52.381 0.00 0.00 31.79 5.24
670 696 4.945543 TGGAGTAGATCTTACGCACACTTA 59.054 41.667 0.00 0.00 0.00 2.24
689 715 0.321298 ACCAAACTTCCGTGGATCCG 60.321 55.000 7.39 0.00 38.36 4.18
701 727 2.420466 GATCCGGACCCGTTAGGC 59.580 66.667 6.12 0.00 40.58 3.93
722 748 2.985456 CAGAGCTCCACCAGTCCC 59.015 66.667 10.93 0.00 0.00 4.46
744 777 2.280186 GGCCCTAATCGCACCGAG 60.280 66.667 0.00 0.00 39.91 4.63
831 864 1.355718 CCCATCACACCAGGGCCTAT 61.356 60.000 5.28 0.00 35.44 2.57
873 906 5.411831 ACGCTATGATCATATCACATGGT 57.588 39.130 15.71 2.62 43.01 3.55
888 922 5.060506 TCACATGGTAGCGAGAAAAGAAAA 58.939 37.500 0.00 0.00 0.00 2.29
944 978 0.755698 TCTATCTCCTGACGCCACCC 60.756 60.000 0.00 0.00 0.00 4.61
1020 1054 7.498570 GCTCTCATGGATAATTTCTTCAACTCT 59.501 37.037 0.00 0.00 0.00 3.24
1161 1198 1.677217 GGTGGGCTGATGAAGACACTC 60.677 57.143 0.00 0.00 34.40 3.51
1183 1220 1.045350 CGAGGAGATTGAGGGGCAGA 61.045 60.000 0.00 0.00 0.00 4.26
1233 1270 4.488136 ATGGCGGCAGCGGATGAA 62.488 61.111 19.29 0.00 46.35 2.57
1242 1279 2.268920 GCGGATGAAGTGCAGGGA 59.731 61.111 0.00 0.00 0.00 4.20
1533 1570 3.692406 GAGACCACGGCCCTTCGT 61.692 66.667 0.00 0.00 44.91 3.85
1644 1681 1.903877 CTGTCGATGACCTTGGGGCT 61.904 60.000 0.00 0.00 35.63 5.19
1794 1831 3.264450 CCCTTCCATCCAAGAAGTACACT 59.736 47.826 0.00 0.00 39.29 3.55
1839 1876 2.889617 CGTGCCGATCCTACCACA 59.110 61.111 0.00 0.00 0.00 4.17
1860 1897 1.760086 CACCGAGGAGCCTGAGGAT 60.760 63.158 0.65 0.00 0.00 3.24
2299 2339 2.047655 TGGTAGCGCCAAAGGACG 60.048 61.111 2.29 0.00 45.94 4.79
2533 2573 5.540337 CCTAGTAGCAAAGTGGAGGATATCA 59.460 44.000 4.83 0.00 0.00 2.15
2600 2640 5.819901 GGGATGTTGATGAGTAAGAGAAAGG 59.180 44.000 0.00 0.00 0.00 3.11
2879 2923 7.063074 CGGTTAGTGTCCACTTATTTCTAGTTG 59.937 40.741 5.10 0.00 42.54 3.16
2899 2943 6.240894 AGTTGAATCATTACCAGCTTTCTGA 58.759 36.000 0.00 0.00 42.95 3.27
2961 3005 2.008045 GCGACCGGTTTACCAAGCATA 61.008 52.381 9.42 0.00 35.14 3.14
2991 3035 8.534954 TGATATAGGTGGTTGCTATATACTCC 57.465 38.462 0.00 0.00 0.00 3.85
2992 3036 7.563924 TGATATAGGTGGTTGCTATATACTCCC 59.436 40.741 0.00 0.00 0.00 4.30
2993 3037 4.214993 AGGTGGTTGCTATATACTCCCT 57.785 45.455 0.00 0.00 0.00 4.20
2994 3038 4.161102 AGGTGGTTGCTATATACTCCCTC 58.839 47.826 0.00 0.00 0.00 4.30
2995 3039 4.140663 AGGTGGTTGCTATATACTCCCTCT 60.141 45.833 0.00 0.00 0.00 3.69
2996 3040 4.021016 GGTGGTTGCTATATACTCCCTCTG 60.021 50.000 0.00 0.00 0.00 3.35
2997 3041 4.589374 GTGGTTGCTATATACTCCCTCTGT 59.411 45.833 0.00 0.00 0.00 3.41
2998 3042 5.773680 GTGGTTGCTATATACTCCCTCTGTA 59.226 44.000 0.00 0.00 0.00 2.74
2999 3043 6.267014 GTGGTTGCTATATACTCCCTCTGTAA 59.733 42.308 0.00 0.00 0.00 2.41
3000 3044 6.842280 TGGTTGCTATATACTCCCTCTGTAAA 59.158 38.462 0.00 0.00 0.00 2.01
3001 3045 7.153315 GGTTGCTATATACTCCCTCTGTAAAC 58.847 42.308 0.00 0.00 0.00 2.01
3002 3046 7.015389 GGTTGCTATATACTCCCTCTGTAAACT 59.985 40.741 0.00 0.00 0.00 2.66
3003 3047 9.075678 GTTGCTATATACTCCCTCTGTAAACTA 57.924 37.037 0.00 0.00 0.00 2.24
3004 3048 9.650714 TTGCTATATACTCCCTCTGTAAACTAA 57.349 33.333 0.00 0.00 0.00 2.24
3005 3049 9.824216 TGCTATATACTCCCTCTGTAAACTAAT 57.176 33.333 0.00 0.00 0.00 1.73
3014 3058 9.680315 CTCCCTCTGTAAACTAATATAAGAACG 57.320 37.037 0.00 0.00 0.00 3.95
3015 3059 9.193806 TCCCTCTGTAAACTAATATAAGAACGT 57.806 33.333 0.00 0.00 0.00 3.99
3016 3060 9.813446 CCCTCTGTAAACTAATATAAGAACGTT 57.187 33.333 0.00 0.00 0.00 3.99
3065 3109 8.530269 AACGCTCTTATATTAATTTACGGAGG 57.470 34.615 0.00 0.00 0.00 4.30
3066 3110 7.095270 ACGCTCTTATATTAATTTACGGAGGG 58.905 38.462 18.58 18.58 37.30 4.30
3067 3111 7.039504 ACGCTCTTATATTAATTTACGGAGGGA 60.040 37.037 22.59 0.00 35.94 4.20
3068 3112 7.488471 CGCTCTTATATTAATTTACGGAGGGAG 59.512 40.741 17.02 0.00 34.63 4.30
3069 3113 8.312564 GCTCTTATATTAATTTACGGAGGGAGT 58.687 37.037 0.00 0.00 0.00 3.85
3134 3179 2.139118 GTTGTTCTGCACTCCTGTCTC 58.861 52.381 0.00 0.00 0.00 3.36
3288 3333 3.425892 CGATCGTCGTTCTTCCTTACTGT 60.426 47.826 7.03 0.00 34.72 3.55
3330 3377 8.834004 TTGTATCCAGTTTCAGTATAGGTAGT 57.166 34.615 0.00 0.00 0.00 2.73
3354 3401 2.254546 TTGGTTCGCTGTGAGATTGT 57.745 45.000 0.00 0.00 0.00 2.71
3381 3428 5.690865 TCTATTTTCAGTTTGTGGTCACCT 58.309 37.500 0.00 0.00 0.00 4.00
3382 3429 6.126409 TCTATTTTCAGTTTGTGGTCACCTT 58.874 36.000 0.00 0.00 0.00 3.50
3457 3505 2.726633 CAACCAAACTAAACTGGTGCG 58.273 47.619 0.00 0.00 45.39 5.34
3514 3562 0.674895 GCAGATGCTCCGTCCAAACT 60.675 55.000 0.00 0.00 38.21 2.66
3525 3573 3.222855 CCAAACTGTGGCGGGCAA 61.223 61.111 5.57 0.00 41.72 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.683011 GGGTGATGTAGCCAGCAACAT 60.683 52.381 0.00 0.00 46.53 2.71
79 80 3.029320 AGCGATGCAATTTGCTTGAAA 57.971 38.095 21.19 1.96 45.31 2.69
128 129 3.474230 AACACGAAGTCGACGGCGT 62.474 57.895 25.58 25.58 41.61 5.68
129 130 2.704193 GAACACGAAGTCGACGGCG 61.704 63.158 24.49 24.49 41.61 6.46
130 131 2.370393 GGAACACGAAGTCGACGGC 61.370 63.158 10.46 5.25 41.61 5.68
182 183 2.031120 TCTTTTTGCTGGAACCAGTGG 58.969 47.619 19.97 7.91 45.24 4.00
201 205 0.096976 CATGTTGCCACCGACGATTC 59.903 55.000 0.00 0.00 0.00 2.52
203 207 2.398554 GCATGTTGCCACCGACGAT 61.399 57.895 0.00 0.00 37.42 3.73
290 294 3.016031 TGTCTGTGTGTTGCATTTCTGT 58.984 40.909 0.00 0.00 0.00 3.41
396 400 1.931007 GCCATGGCCTTCTCCTCCTT 61.931 60.000 27.24 0.00 34.56 3.36
461 467 6.445139 TCTTCCCCTCAATCACTATCTTCTTT 59.555 38.462 0.00 0.00 0.00 2.52
495 501 2.811101 CGTTTTTGCAGCCCCACA 59.189 55.556 0.00 0.00 0.00 4.17
535 542 3.481903 CGTCACGCGCTGCAGAAT 61.482 61.111 20.43 0.00 0.00 2.40
548 555 1.565156 GGTCGCTTGTGCATTCGTCA 61.565 55.000 0.00 0.00 39.64 4.35
571 578 0.748450 ATCAATTGGCCGAGCATTGG 59.252 50.000 5.42 0.00 45.02 3.16
601 608 7.148820 GCGTTTTTACACTGTAGTCGGTAAATA 60.149 37.037 7.89 3.10 36.10 1.40
636 662 1.763968 TCTACTCCACCCGTCTCATG 58.236 55.000 0.00 0.00 0.00 3.07
646 672 3.128938 AGTGTGCGTAAGATCTACTCCAC 59.871 47.826 0.00 2.75 43.02 4.02
664 690 2.171027 TCCACGGAAGTTTGGTAAGTGT 59.829 45.455 0.00 0.00 46.40 3.55
670 696 0.321298 CGGATCCACGGAAGTTTGGT 60.321 55.000 13.41 0.00 46.40 3.67
701 727 2.268280 CTGGTGGAGCTCTGCCTG 59.732 66.667 21.53 18.35 0.00 4.85
722 748 1.819632 GTGCGATTAGGGCCAGGTG 60.820 63.158 6.18 0.00 0.00 4.00
744 777 1.817447 ACTAGTAGGACACACTTCGGC 59.183 52.381 1.45 0.00 0.00 5.54
831 864 4.441079 GCGTTTGGCTCTTACTATGACCTA 60.441 45.833 0.00 0.00 39.11 3.08
873 906 4.360951 TCCCCTTTTTCTTTTCTCGCTA 57.639 40.909 0.00 0.00 0.00 4.26
944 978 2.043450 ACTCTCGAGGCTGGAGGG 60.043 66.667 23.05 23.05 38.02 4.30
1161 1198 2.419198 CCCTCAATCTCCTCGGCG 59.581 66.667 0.00 0.00 0.00 6.46
1183 1220 0.693767 CCCTCATCCTGCTCTTCCCT 60.694 60.000 0.00 0.00 0.00 4.20
1233 1270 1.614824 CCCTTCCTCTCCCTGCACT 60.615 63.158 0.00 0.00 0.00 4.40
1242 1279 2.285743 GAGCCACCCCCTTCCTCT 60.286 66.667 0.00 0.00 0.00 3.69
1336 1373 1.818363 CGTCGTCCTCATCCTCCGA 60.818 63.158 0.00 0.00 0.00 4.55
1644 1681 2.680974 AAAGAAGTCCAGCAGCGGCA 62.681 55.000 12.44 0.00 44.61 5.69
1653 1690 0.776810 TGGCATGGGAAAGAAGTCCA 59.223 50.000 0.00 0.00 39.70 4.02
1794 1831 0.599204 GAACCTGTGCCTCGAAACGA 60.599 55.000 0.00 0.00 0.00 3.85
1830 1867 1.191535 CCTCGGTGAATGTGGTAGGA 58.808 55.000 0.00 0.00 0.00 2.94
1839 1876 1.333636 CCTCAGGCTCCTCGGTGAAT 61.334 60.000 0.00 0.00 0.00 2.57
2533 2573 2.943033 CCACAGAGTTCAACCGTTTTCT 59.057 45.455 0.00 0.00 0.00 2.52
2600 2640 5.106673 ACTCAGTTTAGGTGCGCTATTTTTC 60.107 40.000 9.73 0.00 0.00 2.29
2664 2706 6.293004 TCCAATTTGAGAACAAACAGGTTT 57.707 33.333 0.00 0.00 46.56 3.27
2684 2728 1.371467 ATGAACACCACCAGGATCCA 58.629 50.000 15.82 0.00 38.69 3.41
2844 2888 1.334689 GGACACTAACCGCAAACAAGC 60.335 52.381 0.00 0.00 0.00 4.01
2879 2923 7.325660 TCAATCAGAAAGCTGGTAATGATTC 57.674 36.000 8.92 0.00 42.53 2.52
2936 2980 0.250381 TGGTAAACCGGTCGCAACAT 60.250 50.000 8.04 0.00 39.43 2.71
2937 2981 0.463295 TTGGTAAACCGGTCGCAACA 60.463 50.000 8.04 1.33 39.43 3.33
2938 2982 0.236449 CTTGGTAAACCGGTCGCAAC 59.764 55.000 8.04 3.60 39.43 4.17
2988 3032 9.680315 CGTTCTTATATTAGTTTACAGAGGGAG 57.320 37.037 0.00 0.00 0.00 4.30
2989 3033 9.193806 ACGTTCTTATATTAGTTTACAGAGGGA 57.806 33.333 0.00 0.00 0.00 4.20
2990 3034 9.813446 AACGTTCTTATATTAGTTTACAGAGGG 57.187 33.333 0.00 0.00 0.00 4.30
3039 3083 8.985805 CCTCCGTAAATTAATATAAGAGCGTTT 58.014 33.333 0.00 0.00 0.00 3.60
3040 3084 7.601508 CCCTCCGTAAATTAATATAAGAGCGTT 59.398 37.037 0.00 0.00 0.00 4.84
3041 3085 7.039504 TCCCTCCGTAAATTAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
3042 3086 7.318141 TCCCTCCGTAAATTAATATAAGAGCG 58.682 38.462 0.00 0.00 0.00 5.03
3043 3087 8.312564 ACTCCCTCCGTAAATTAATATAAGAGC 58.687 37.037 0.00 0.00 0.00 4.09
3050 3094 8.092687 GCTGAATACTCCCTCCGTAAATTAATA 58.907 37.037 0.00 0.00 0.00 0.98
3051 3095 6.935208 GCTGAATACTCCCTCCGTAAATTAAT 59.065 38.462 0.00 0.00 0.00 1.40
3052 3096 6.099269 AGCTGAATACTCCCTCCGTAAATTAA 59.901 38.462 0.00 0.00 0.00 1.40
3053 3097 5.601313 AGCTGAATACTCCCTCCGTAAATTA 59.399 40.000 0.00 0.00 0.00 1.40
3054 3098 4.409247 AGCTGAATACTCCCTCCGTAAATT 59.591 41.667 0.00 0.00 0.00 1.82
3055 3099 3.967987 AGCTGAATACTCCCTCCGTAAAT 59.032 43.478 0.00 0.00 0.00 1.40
3056 3100 3.132289 CAGCTGAATACTCCCTCCGTAAA 59.868 47.826 8.42 0.00 0.00 2.01
3057 3101 2.693591 CAGCTGAATACTCCCTCCGTAA 59.306 50.000 8.42 0.00 0.00 3.18
3058 3102 2.307768 CAGCTGAATACTCCCTCCGTA 58.692 52.381 8.42 0.00 0.00 4.02
3059 3103 1.115467 CAGCTGAATACTCCCTCCGT 58.885 55.000 8.42 0.00 0.00 4.69
3060 3104 1.115467 ACAGCTGAATACTCCCTCCG 58.885 55.000 23.35 0.00 0.00 4.63
3061 3105 2.911484 CAACAGCTGAATACTCCCTCC 58.089 52.381 23.35 0.00 0.00 4.30
3062 3106 2.093235 AGCAACAGCTGAATACTCCCTC 60.093 50.000 23.35 0.00 37.19 4.30
3063 3107 1.912043 AGCAACAGCTGAATACTCCCT 59.088 47.619 23.35 1.87 37.19 4.20
3064 3108 2.409948 AGCAACAGCTGAATACTCCC 57.590 50.000 23.35 0.00 37.19 4.30
3065 3109 4.331168 CAGTAAGCAACAGCTGAATACTCC 59.669 45.833 23.35 3.12 38.93 3.85
3066 3110 5.171476 TCAGTAAGCAACAGCTGAATACTC 58.829 41.667 23.35 5.12 38.93 2.59
3067 3111 5.152623 TCAGTAAGCAACAGCTGAATACT 57.847 39.130 23.35 16.22 38.93 2.12
3068 3112 5.163814 CCTTCAGTAAGCAACAGCTGAATAC 60.164 44.000 23.35 14.37 43.96 1.89
3069 3113 4.937620 CCTTCAGTAAGCAACAGCTGAATA 59.062 41.667 23.35 2.75 43.96 1.75
3070 3114 3.755378 CCTTCAGTAAGCAACAGCTGAAT 59.245 43.478 23.35 5.76 43.96 2.57
3075 3119 4.065789 AGTTACCTTCAGTAAGCAACAGC 58.934 43.478 0.00 0.00 41.63 4.40
3134 3179 2.400399 CCTTCAAGCACTGCAAATGTG 58.600 47.619 3.30 0.37 38.36 3.21
3288 3333 6.264832 GGATACAATTTCATCGTTGCATCAA 58.735 36.000 0.00 0.00 32.32 2.57
3330 3377 6.112734 ACAATCTCACAGCGAACCAATATTA 58.887 36.000 0.00 0.00 0.00 0.98
3354 3401 7.606456 GGTGACCACAAACTGAAAATAGAGATA 59.394 37.037 0.00 0.00 0.00 1.98
3431 3479 3.821033 CCAGTTTAGTTTGGTTGCTAGCT 59.179 43.478 17.23 0.00 0.00 3.32
3457 3505 2.474712 GTTGCTAGCGACGTTGCC 59.525 61.111 24.15 9.77 34.65 4.52
3525 3573 2.041701 AGTTTGGTTTCCATGCAGCTT 58.958 42.857 0.00 0.00 31.53 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.