Multiple sequence alignment - TraesCS3A01G185000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G185000 chr3A 100.000 2834 0 0 1 2834 216467699 216464866 0.000000e+00 5234.0
1 TraesCS3A01G185000 chr3A 95.763 118 5 0 2714 2831 515716764 515716881 1.040000e-44 191.0
2 TraesCS3A01G185000 chr3D 92.610 1962 110 15 736 2665 176527408 176525450 0.000000e+00 2787.0
3 TraesCS3A01G185000 chr3D 86.768 461 52 9 4 458 176580313 176579856 3.260000e-139 505.0
4 TraesCS3A01G185000 chr3D 86.758 219 17 8 505 713 176579857 176579641 1.700000e-57 233.0
5 TraesCS3A01G185000 chr3D 95.000 120 6 0 2715 2834 43505520 43505401 3.730000e-44 189.0
6 TraesCS3A01G185000 chr3B 96.622 1036 34 1 952 1987 255706465 255705431 0.000000e+00 1718.0
7 TraesCS3A01G185000 chr3B 89.873 632 53 6 2027 2649 255699552 255698923 0.000000e+00 802.0
8 TraesCS3A01G185000 chr3B 86.977 430 50 6 4 428 255834908 255834480 1.970000e-131 479.0
9 TraesCS3A01G185000 chr3B 96.000 125 5 0 767 891 255706949 255706825 1.330000e-48 204.0
10 TraesCS3A01G185000 chr5D 95.833 120 5 0 2714 2833 71878128 71878247 8.010000e-46 195.0
11 TraesCS3A01G185000 chr5D 95.000 120 6 0 2715 2834 190849665 190849546 3.730000e-44 189.0
12 TraesCS3A01G185000 chr1D 95.868 121 4 1 2715 2834 334072145 334072265 8.010000e-46 195.0
13 TraesCS3A01G185000 chr4D 95.763 118 4 1 2714 2831 315091884 315091768 3.730000e-44 189.0
14 TraesCS3A01G185000 chr7A 95.000 120 5 1 2715 2834 421695292 421695410 1.340000e-43 187.0
15 TraesCS3A01G185000 chr6D 95.000 120 4 1 2715 2834 104053531 104053648 1.340000e-43 187.0
16 TraesCS3A01G185000 chr5B 94.915 118 5 1 2713 2830 608624137 608624021 1.730000e-42 183.0
17 TraesCS3A01G185000 chr2B 89.362 47 5 0 199 245 734489186 734489232 3.050000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G185000 chr3A 216464866 216467699 2833 True 5234 5234 100.000 1 2834 1 chr3A.!!$R1 2833
1 TraesCS3A01G185000 chr3D 176525450 176527408 1958 True 2787 2787 92.610 736 2665 1 chr3D.!!$R2 1929
2 TraesCS3A01G185000 chr3D 176579641 176580313 672 True 369 505 86.763 4 713 2 chr3D.!!$R3 709
3 TraesCS3A01G185000 chr3B 255705431 255706949 1518 True 961 1718 96.311 767 1987 2 chr3B.!!$R3 1220
4 TraesCS3A01G185000 chr3B 255698923 255699552 629 True 802 802 89.873 2027 2649 1 chr3B.!!$R1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 468 0.035915 GGAGAGGAAAGTGAGCCCAC 60.036 60.0 0.0 0.0 43.50 4.61 F
466 472 0.111253 AGGAAAGTGAGCCCACAAGG 59.889 55.0 0.0 0.0 45.54 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 2091 0.743345 GTGCCCTCGGGATTGTACAC 60.743 60.000 6.08 0.0 37.5 2.90 R
2202 2539 1.965643 GTAGGTGTAGGTGGTGTGACA 59.034 52.381 0.00 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.369625 CTTCGTGTTGGGGTAGATGC 58.630 55.000 0.00 0.00 0.00 3.91
29 30 0.535335 TCGTGTTGGGGTAGATGCTC 59.465 55.000 0.00 0.00 0.00 4.26
34 35 2.435805 TGTTGGGGTAGATGCTCATCTC 59.564 50.000 14.97 7.86 44.37 2.75
35 36 2.703007 GTTGGGGTAGATGCTCATCTCT 59.297 50.000 14.97 0.00 44.37 3.10
42 43 4.280425 GGTAGATGCTCATCTCTGATGTCA 59.720 45.833 14.97 7.33 44.37 3.58
45 46 1.135721 TGCTCATCTCTGATGTCACCG 59.864 52.381 7.33 0.00 0.00 4.94
54 55 0.904649 TGATGTCACCGCCTTCATCT 59.095 50.000 0.00 0.00 37.93 2.90
67 68 3.077359 CCTTCATCTTTGACTGGTCACC 58.923 50.000 2.65 0.00 39.66 4.02
84 85 4.735132 CTCGGCCAGGTCGCGAAA 62.735 66.667 12.06 0.00 0.00 3.46
86 87 3.564027 CGGCCAGGTCGCGAAATC 61.564 66.667 12.06 3.48 0.00 2.17
97 98 4.830765 CGAAATCGCCCGGGCTGA 62.831 66.667 41.01 36.04 39.32 4.26
98 99 2.203209 GAAATCGCCCGGGCTGAT 60.203 61.111 41.01 36.49 39.32 2.90
117 120 0.888619 TCTCGAGAGTTTGGCGTCAT 59.111 50.000 12.08 0.00 0.00 3.06
132 135 0.599728 GTCATGCGAGATCCAGGAGC 60.600 60.000 0.00 0.00 0.00 4.70
149 152 2.435586 CAGCAGGAGCCGGTTCAG 60.436 66.667 20.67 12.66 43.56 3.02
186 190 2.456577 TCGGATCCATGAGTTGTCAGA 58.543 47.619 13.41 0.00 35.66 3.27
197 201 6.038603 CCATGAGTTGTCAGAGAAAGTCAAAA 59.961 38.462 0.00 0.00 38.77 2.44
202 206 8.917415 AGTTGTCAGAGAAAGTCAAAATTTTC 57.083 30.769 0.00 0.00 32.77 2.29
230 234 0.323633 CACCACCCATCTCATTGCCA 60.324 55.000 0.00 0.00 0.00 4.92
241 245 1.938577 CTCATTGCCAATGTCGAGGAG 59.061 52.381 16.55 2.59 39.87 3.69
271 275 2.636893 CCAAGAGGGATTCATCGAGGAT 59.363 50.000 0.00 0.00 40.01 3.24
305 309 1.154073 GAGGAAACCGACGAGTCCG 60.154 63.158 0.00 0.00 42.50 4.79
325 329 2.294074 GTAGGCAACCAACTGTCAACA 58.706 47.619 0.00 0.00 37.17 3.33
326 330 1.102978 AGGCAACCAACTGTCAACAC 58.897 50.000 0.00 0.00 37.17 3.32
327 331 0.248458 GGCAACCAACTGTCAACACG 60.248 55.000 0.00 0.00 0.00 4.49
328 332 0.248458 GCAACCAACTGTCAACACGG 60.248 55.000 0.00 0.00 34.67 4.94
329 333 0.248458 CAACCAACTGTCAACACGGC 60.248 55.000 0.00 0.00 31.07 5.68
330 334 0.678366 AACCAACTGTCAACACGGCA 60.678 50.000 0.00 0.00 31.07 5.69
331 335 1.355210 CCAACTGTCAACACGGCAC 59.645 57.895 0.00 0.00 31.07 5.01
334 338 2.111043 CTGTCAACACGGCACCCT 59.889 61.111 0.00 0.00 0.00 4.34
335 339 1.961277 CTGTCAACACGGCACCCTC 60.961 63.158 0.00 0.00 0.00 4.30
336 340 2.110213 GTCAACACGGCACCCTCA 59.890 61.111 0.00 0.00 0.00 3.86
337 341 2.110213 TCAACACGGCACCCTCAC 59.890 61.111 0.00 0.00 0.00 3.51
338 342 2.203139 CAACACGGCACCCTCACA 60.203 61.111 0.00 0.00 0.00 3.58
339 343 1.600636 CAACACGGCACCCTCACAT 60.601 57.895 0.00 0.00 0.00 3.21
349 354 0.837691 ACCCTCACATCAGTGGCAGA 60.838 55.000 0.00 0.00 45.91 4.26
356 361 2.676839 CACATCAGTGGCAGATGACTTC 59.323 50.000 19.92 0.00 44.34 3.01
359 364 1.618343 TCAGTGGCAGATGACTTCGAA 59.382 47.619 0.00 0.00 0.00 3.71
362 367 2.826128 AGTGGCAGATGACTTCGAACTA 59.174 45.455 0.00 0.00 0.00 2.24
366 371 4.047822 GGCAGATGACTTCGAACTATGAG 58.952 47.826 0.00 0.00 0.00 2.90
369 374 6.266323 GCAGATGACTTCGAACTATGAGTTA 58.734 40.000 0.00 0.00 38.80 2.24
373 378 9.121658 AGATGACTTCGAACTATGAGTTATACA 57.878 33.333 0.00 0.00 38.80 2.29
383 388 7.432148 ACTATGAGTTATACATGGTGGACAA 57.568 36.000 0.00 0.00 37.87 3.18
389 394 2.871096 TACATGGTGGACAAGAACCC 57.129 50.000 0.00 0.00 35.44 4.11
425 430 2.401766 GGCAGTGGCACGGAGAATG 61.402 63.158 22.02 9.84 43.71 2.67
458 464 0.108567 GACGGGAGAGGAAAGTGAGC 60.109 60.000 0.00 0.00 0.00 4.26
459 465 1.219393 CGGGAGAGGAAAGTGAGCC 59.781 63.158 0.00 0.00 0.00 4.70
460 466 1.604915 GGGAGAGGAAAGTGAGCCC 59.395 63.158 0.00 0.00 0.00 5.19
461 467 1.201429 GGGAGAGGAAAGTGAGCCCA 61.201 60.000 0.00 0.00 34.25 5.36
462 468 0.035915 GGAGAGGAAAGTGAGCCCAC 60.036 60.000 0.00 0.00 43.50 4.61
463 469 0.687354 GAGAGGAAAGTGAGCCCACA 59.313 55.000 0.00 0.00 45.54 4.17
464 470 1.072331 GAGAGGAAAGTGAGCCCACAA 59.928 52.381 0.00 0.00 45.54 3.33
465 471 1.072965 AGAGGAAAGTGAGCCCACAAG 59.927 52.381 0.00 0.00 45.54 3.16
466 472 0.111253 AGGAAAGTGAGCCCACAAGG 59.889 55.000 0.00 0.00 45.54 3.61
477 483 3.935993 CCACAAGGGAGTCGTTCAT 57.064 52.632 0.00 0.00 40.01 2.57
478 484 1.726853 CCACAAGGGAGTCGTTCATC 58.273 55.000 0.00 0.00 40.01 2.92
479 485 1.276421 CCACAAGGGAGTCGTTCATCT 59.724 52.381 0.00 0.00 40.01 2.90
480 486 2.496070 CCACAAGGGAGTCGTTCATCTA 59.504 50.000 0.00 0.00 40.01 1.98
481 487 3.429547 CCACAAGGGAGTCGTTCATCTAG 60.430 52.174 0.00 0.00 40.01 2.43
482 488 3.193691 CACAAGGGAGTCGTTCATCTAGT 59.806 47.826 0.00 0.00 0.00 2.57
483 489 3.193691 ACAAGGGAGTCGTTCATCTAGTG 59.806 47.826 0.00 0.00 0.00 2.74
484 490 1.751924 AGGGAGTCGTTCATCTAGTGC 59.248 52.381 0.00 0.00 0.00 4.40
485 491 1.751924 GGGAGTCGTTCATCTAGTGCT 59.248 52.381 0.00 0.00 0.00 4.40
486 492 2.950309 GGGAGTCGTTCATCTAGTGCTA 59.050 50.000 0.00 0.00 0.00 3.49
487 493 3.243134 GGGAGTCGTTCATCTAGTGCTAC 60.243 52.174 0.00 0.00 0.00 3.58
488 494 3.377485 GGAGTCGTTCATCTAGTGCTACA 59.623 47.826 0.00 0.00 0.00 2.74
489 495 4.036971 GGAGTCGTTCATCTAGTGCTACAT 59.963 45.833 0.00 0.00 0.00 2.29
490 496 4.926244 AGTCGTTCATCTAGTGCTACATG 58.074 43.478 0.00 0.00 0.00 3.21
491 497 4.640647 AGTCGTTCATCTAGTGCTACATGA 59.359 41.667 0.00 0.00 0.00 3.07
492 498 5.300539 AGTCGTTCATCTAGTGCTACATGAT 59.699 40.000 0.00 0.00 0.00 2.45
493 499 5.400782 GTCGTTCATCTAGTGCTACATGATG 59.599 44.000 0.00 0.00 34.08 3.07
494 500 5.067805 TCGTTCATCTAGTGCTACATGATGT 59.932 40.000 2.65 2.65 34.28 3.06
495 501 5.174579 CGTTCATCTAGTGCTACATGATGTG 59.825 44.000 8.61 0.00 34.28 3.21
496 502 5.205759 TCATCTAGTGCTACATGATGTGG 57.794 43.478 8.61 6.43 34.28 4.17
497 503 4.895297 TCATCTAGTGCTACATGATGTGGA 59.105 41.667 13.38 0.00 34.28 4.02
498 504 5.541484 TCATCTAGTGCTACATGATGTGGAT 59.459 40.000 13.38 0.49 34.28 3.41
499 505 5.205759 TCTAGTGCTACATGATGTGGATG 57.794 43.478 13.38 0.00 29.57 3.51
500 506 3.920231 AGTGCTACATGATGTGGATGT 57.080 42.857 13.38 0.00 37.75 3.06
501 507 3.538591 AGTGCTACATGATGTGGATGTG 58.461 45.455 13.38 0.00 35.62 3.21
502 508 2.615447 GTGCTACATGATGTGGATGTGG 59.385 50.000 13.38 0.00 35.62 4.17
503 509 2.504996 TGCTACATGATGTGGATGTGGA 59.495 45.455 13.38 0.00 35.00 4.02
504 510 3.054508 TGCTACATGATGTGGATGTGGAA 60.055 43.478 13.38 0.00 35.00 3.53
505 511 3.562973 GCTACATGATGTGGATGTGGAAG 59.437 47.826 13.38 0.00 35.00 3.46
519 525 0.902531 TGGAAGGAGAACCGGATGTC 59.097 55.000 9.46 3.71 41.83 3.06
538 544 1.185315 CGGGTGCAGGGAATGAAATT 58.815 50.000 0.00 0.00 40.93 1.82
542 548 0.531657 TGCAGGGAATGAAATTGGCG 59.468 50.000 0.00 0.00 36.07 5.69
544 550 0.179103 CAGGGAATGAAATTGGCGGC 60.179 55.000 0.00 0.00 36.07 6.53
564 570 1.534729 GGCGATCAAAAAGTGAGGGT 58.465 50.000 0.00 0.00 40.43 4.34
566 572 2.151202 GCGATCAAAAAGTGAGGGTGA 58.849 47.619 0.00 0.00 40.43 4.02
580 596 1.082194 AGGGTGAGGAAGGGATAACCA 59.918 52.381 0.00 0.00 43.89 3.67
582 598 1.490910 GGTGAGGAAGGGATAACCAGG 59.509 57.143 0.00 0.00 43.89 4.45
585 601 1.141858 GAGGAAGGGATAACCAGGCAG 59.858 57.143 0.00 0.00 43.89 4.85
591 607 0.181350 GGATAACCAGGCAGGAGGTG 59.819 60.000 1.67 0.00 41.22 4.00
599 615 2.674220 GGCAGGAGGTGAGAAGGGG 61.674 68.421 0.00 0.00 0.00 4.79
602 618 1.362224 CAGGAGGTGAGAAGGGGAAA 58.638 55.000 0.00 0.00 0.00 3.13
648 664 1.490490 TGGAGATTGGAGGGGAAATCG 59.510 52.381 0.00 0.00 37.77 3.34
655 671 0.180642 GGAGGGGAAATCGGGAGTTC 59.819 60.000 0.49 0.49 34.94 3.01
657 673 1.490910 GAGGGGAAATCGGGAGTTCAT 59.509 52.381 10.54 0.00 37.16 2.57
660 676 3.722101 AGGGGAAATCGGGAGTTCATATT 59.278 43.478 10.54 0.00 37.16 1.28
695 711 7.745620 AGAAATGTCGAAATCAAGTTAACCT 57.254 32.000 0.88 0.00 0.00 3.50
726 742 6.765915 ATTATTCTTCAGCTGAGGAAAACC 57.234 37.500 35.80 0.00 42.21 3.27
727 743 2.568623 TCTTCAGCTGAGGAAAACCC 57.431 50.000 24.81 0.00 0.00 4.11
728 744 1.774254 TCTTCAGCTGAGGAAAACCCA 59.226 47.619 24.81 2.38 37.41 4.51
729 745 2.174639 TCTTCAGCTGAGGAAAACCCAA 59.825 45.455 24.81 1.62 37.41 4.12
730 746 2.746279 TCAGCTGAGGAAAACCCAAA 57.254 45.000 13.74 0.00 37.41 3.28
731 747 2.306847 TCAGCTGAGGAAAACCCAAAC 58.693 47.619 13.74 0.00 37.41 2.93
732 748 1.001378 CAGCTGAGGAAAACCCAAACG 60.001 52.381 8.42 0.00 37.41 3.60
733 749 1.029681 GCTGAGGAAAACCCAAACGT 58.970 50.000 0.00 0.00 37.41 3.99
734 750 1.407618 GCTGAGGAAAACCCAAACGTT 59.592 47.619 0.00 0.00 37.41 3.99
742 758 5.361571 AGGAAAACCCAAACGTTACTTTCAT 59.638 36.000 0.00 1.93 37.41 2.57
747 763 6.009115 ACCCAAACGTTACTTTCATGATTC 57.991 37.500 0.00 0.00 0.00 2.52
753 769 5.547465 ACGTTACTTTCATGATTCCACTGA 58.453 37.500 0.00 0.00 0.00 3.41
757 773 7.330946 CGTTACTTTCATGATTCCACTGAAGTA 59.669 37.037 0.00 2.27 33.05 2.24
759 775 6.773638 ACTTTCATGATTCCACTGAAGTACT 58.226 36.000 0.00 0.00 33.05 2.73
823 839 9.816354 AAAGTCTAAGCAAAACAACATTTACAT 57.184 25.926 0.00 0.00 0.00 2.29
843 859 1.084289 GCGCCTTCCTATTTTCACGT 58.916 50.000 0.00 0.00 0.00 4.49
909 930 2.033194 CGCACGTCTCTTTTCCCCC 61.033 63.158 0.00 0.00 0.00 5.40
1107 1427 0.251165 CCACCAACATCCCCGTCTTT 60.251 55.000 0.00 0.00 0.00 2.52
1311 1631 3.965888 GAACCAGTTCCATGGCTCT 57.034 52.632 6.96 4.70 44.80 4.09
1376 1696 2.664851 CAGCGCCTTCCACGACAA 60.665 61.111 2.29 0.00 0.00 3.18
1382 1702 2.358247 CTTCCACGACAACCCGGG 60.358 66.667 22.25 22.25 0.00 5.73
1383 1703 2.843411 TTCCACGACAACCCGGGA 60.843 61.111 32.02 0.00 34.30 5.14
1724 2044 3.179265 GCTCACGTACATGCGCGT 61.179 61.111 8.43 0.00 42.45 6.01
1897 2219 5.590259 CGATTTGTTTTATCATCTCCCCAGT 59.410 40.000 0.00 0.00 0.00 4.00
1937 2259 5.047847 ACGTATGTGTGCATAGATTGTACC 58.952 41.667 0.00 0.00 39.94 3.34
2063 2400 6.420913 AATGTTATACATCCTAGGTTCGCT 57.579 37.500 9.08 0.00 37.97 4.93
2083 2420 2.667318 CGGAGCAAACACGCGTGAT 61.667 57.895 42.94 30.98 36.85 3.06
2110 2447 2.570442 TAGTTATGCGACGTCATGCA 57.430 45.000 18.40 18.40 46.51 3.96
2138 2475 0.179076 CACACACACCTCTGCTCACA 60.179 55.000 0.00 0.00 0.00 3.58
2198 2535 2.345641 CGCTCGAACGATTTTCTCATGT 59.654 45.455 1.02 0.00 34.06 3.21
2202 2539 6.088217 CGCTCGAACGATTTTCTCATGTATAT 59.912 38.462 1.02 0.00 34.06 0.86
2225 2567 1.275291 CACACCACCTACACCTACCTG 59.725 57.143 0.00 0.00 0.00 4.00
2242 2585 4.503741 ACCTGTCCATTTTTCGACAATG 57.496 40.909 8.87 8.87 38.48 2.82
2300 2643 2.033448 GTGCACCCCGGAATGTCA 59.967 61.111 5.22 0.45 0.00 3.58
2351 2697 4.778213 AAAAATCATCTCCAGATCCGGA 57.222 40.909 6.61 6.61 31.21 5.14
2421 2767 2.363406 GCCATCAAGCCCTTGCCT 60.363 61.111 3.18 0.00 40.24 4.75
2494 2841 2.104111 TCCTCGCTACCAATACCCAATG 59.896 50.000 0.00 0.00 0.00 2.82
2498 2845 3.131396 CGCTACCAATACCCAATGTCTC 58.869 50.000 0.00 0.00 0.00 3.36
2512 2859 1.305046 GTCTCCCTCCCCTCGTCAA 60.305 63.158 0.00 0.00 0.00 3.18
2524 2871 2.494059 CCTCGTCAATGTTTGGTCTGT 58.506 47.619 0.00 0.00 0.00 3.41
2541 2888 1.802715 GTGACATGTGCAATGCGGC 60.803 57.895 1.15 0.00 0.00 6.53
2542 2889 2.266627 TGACATGTGCAATGCGGCA 61.267 52.632 1.15 4.58 42.53 5.69
2593 2942 3.453717 AGTCACCATCATCATGCACTACT 59.546 43.478 0.00 0.00 0.00 2.57
2643 2992 0.396556 TAGCCATCTGAGTACCGCCA 60.397 55.000 0.00 0.00 0.00 5.69
2649 2998 1.262417 TCTGAGTACCGCCACATCAA 58.738 50.000 0.00 0.00 0.00 2.57
2651 3000 0.682292 TGAGTACCGCCACATCAACA 59.318 50.000 0.00 0.00 0.00 3.33
2665 3014 0.036388 TCAACAACCTCGCCATCTCC 60.036 55.000 0.00 0.00 0.00 3.71
2666 3015 1.026718 CAACAACCTCGCCATCTCCC 61.027 60.000 0.00 0.00 0.00 4.30
2667 3016 1.488705 AACAACCTCGCCATCTCCCA 61.489 55.000 0.00 0.00 0.00 4.37
2668 3017 1.450312 CAACCTCGCCATCTCCCAC 60.450 63.158 0.00 0.00 0.00 4.61
2669 3018 2.670148 AACCTCGCCATCTCCCACC 61.670 63.158 0.00 0.00 0.00 4.61
2670 3019 3.866582 CCTCGCCATCTCCCACCC 61.867 72.222 0.00 0.00 0.00 4.61
2671 3020 2.765807 CTCGCCATCTCCCACCCT 60.766 66.667 0.00 0.00 0.00 4.34
2672 3021 2.764128 TCGCCATCTCCCACCCTC 60.764 66.667 0.00 0.00 0.00 4.30
2673 3022 3.083349 CGCCATCTCCCACCCTCA 61.083 66.667 0.00 0.00 0.00 3.86
2674 3023 2.669133 CGCCATCTCCCACCCTCAA 61.669 63.158 0.00 0.00 0.00 3.02
2675 3024 1.225704 GCCATCTCCCACCCTCAAG 59.774 63.158 0.00 0.00 0.00 3.02
2676 3025 1.225704 CCATCTCCCACCCTCAAGC 59.774 63.158 0.00 0.00 0.00 4.01
2677 3026 1.277580 CCATCTCCCACCCTCAAGCT 61.278 60.000 0.00 0.00 0.00 3.74
2678 3027 0.179936 CATCTCCCACCCTCAAGCTC 59.820 60.000 0.00 0.00 0.00 4.09
2679 3028 0.985490 ATCTCCCACCCTCAAGCTCC 60.985 60.000 0.00 0.00 0.00 4.70
2680 3029 3.003173 TCCCACCCTCAAGCTCCG 61.003 66.667 0.00 0.00 0.00 4.63
2681 3030 3.322466 CCCACCCTCAAGCTCCGT 61.322 66.667 0.00 0.00 0.00 4.69
2682 3031 2.266055 CCACCCTCAAGCTCCGTC 59.734 66.667 0.00 0.00 0.00 4.79
2683 3032 2.125912 CACCCTCAAGCTCCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
2684 3033 2.600769 ACCCTCAAGCTCCGTCGT 60.601 61.111 0.00 0.00 0.00 4.34
2685 3034 2.125912 CCCTCAAGCTCCGTCGTG 60.126 66.667 0.00 0.00 0.00 4.35
2686 3035 2.651361 CCTCAAGCTCCGTCGTGT 59.349 61.111 0.00 0.00 0.00 4.49
2687 3036 1.444553 CCTCAAGCTCCGTCGTGTC 60.445 63.158 0.00 0.00 0.00 3.67
2688 3037 1.285950 CTCAAGCTCCGTCGTGTCA 59.714 57.895 0.00 0.00 0.00 3.58
2689 3038 0.109086 CTCAAGCTCCGTCGTGTCAT 60.109 55.000 0.00 0.00 0.00 3.06
2690 3039 0.109272 TCAAGCTCCGTCGTGTCATC 60.109 55.000 0.00 0.00 0.00 2.92
2691 3040 1.154016 AAGCTCCGTCGTGTCATCG 60.154 57.895 0.00 0.00 0.00 3.84
2692 3041 1.583495 AAGCTCCGTCGTGTCATCGA 61.583 55.000 0.00 0.00 37.51 3.59
2698 3047 3.976758 TCGTGTCATCGACCTCGT 58.023 55.556 0.00 0.00 40.80 4.18
2699 3048 1.792301 TCGTGTCATCGACCTCGTC 59.208 57.895 0.00 0.00 40.80 4.20
2700 3049 0.952010 TCGTGTCATCGACCTCGTCA 60.952 55.000 0.00 0.00 40.80 4.35
2701 3050 0.109919 CGTGTCATCGACCTCGTCAA 60.110 55.000 0.00 0.00 40.80 3.18
2702 3051 1.337821 GTGTCATCGACCTCGTCAAC 58.662 55.000 0.00 0.00 40.80 3.18
2703 3052 0.109919 TGTCATCGACCTCGTCAACG 60.110 55.000 0.00 0.00 40.80 4.10
2704 3053 0.109873 GTCATCGACCTCGTCAACGT 60.110 55.000 2.09 0.00 40.80 3.99
2705 3054 0.594602 TCATCGACCTCGTCAACGTT 59.405 50.000 0.00 0.00 40.80 3.99
2706 3055 0.708370 CATCGACCTCGTCAACGTTG 59.292 55.000 22.35 22.35 40.80 4.10
2707 3056 0.313043 ATCGACCTCGTCAACGTTGT 59.687 50.000 26.47 7.37 40.80 3.32
2708 3057 0.317269 TCGACCTCGTCAACGTTGTC 60.317 55.000 26.47 20.33 40.80 3.18
2709 3058 1.273455 CGACCTCGTCAACGTTGTCC 61.273 60.000 26.47 17.21 40.80 4.02
2710 3059 0.031721 GACCTCGTCAACGTTGTCCT 59.968 55.000 26.47 5.87 40.80 3.85
2711 3060 0.031721 ACCTCGTCAACGTTGTCCTC 59.968 55.000 26.47 14.56 40.80 3.71
2712 3061 0.666577 CCTCGTCAACGTTGTCCTCC 60.667 60.000 26.47 10.47 40.80 4.30
2713 3062 0.666577 CTCGTCAACGTTGTCCTCCC 60.667 60.000 26.47 8.91 40.80 4.30
2714 3063 1.111116 TCGTCAACGTTGTCCTCCCT 61.111 55.000 26.47 0.00 40.80 4.20
2715 3064 0.944311 CGTCAACGTTGTCCTCCCTG 60.944 60.000 26.47 5.00 34.11 4.45
2716 3065 0.106149 GTCAACGTTGTCCTCCCTGT 59.894 55.000 26.47 0.00 0.00 4.00
2717 3066 1.342174 GTCAACGTTGTCCTCCCTGTA 59.658 52.381 26.47 1.47 0.00 2.74
2718 3067 1.616865 TCAACGTTGTCCTCCCTGTAG 59.383 52.381 26.47 0.00 0.00 2.74
2719 3068 0.974383 AACGTTGTCCTCCCTGTAGG 59.026 55.000 0.00 0.00 38.06 3.18
2730 3079 3.315765 CCTGTAGGGAAACGTTGCA 57.684 52.632 8.91 0.00 37.23 4.08
2731 3080 1.821216 CCTGTAGGGAAACGTTGCAT 58.179 50.000 8.91 0.00 37.23 3.96
2732 3081 1.468520 CCTGTAGGGAAACGTTGCATG 59.531 52.381 8.91 0.00 37.23 4.06
2733 3082 1.468520 CTGTAGGGAAACGTTGCATGG 59.531 52.381 8.91 0.00 0.00 3.66
2734 3083 1.072489 TGTAGGGAAACGTTGCATGGA 59.928 47.619 8.91 0.00 0.00 3.41
2735 3084 2.156098 GTAGGGAAACGTTGCATGGAA 58.844 47.619 8.91 0.00 0.00 3.53
2736 3085 1.698506 AGGGAAACGTTGCATGGAAA 58.301 45.000 8.91 0.00 0.00 3.13
2737 3086 2.035632 AGGGAAACGTTGCATGGAAAA 58.964 42.857 8.91 0.00 0.00 2.29
2738 3087 2.131972 GGGAAACGTTGCATGGAAAAC 58.868 47.619 8.91 0.00 0.00 2.43
2739 3088 2.482142 GGGAAACGTTGCATGGAAAACA 60.482 45.455 8.91 0.00 0.00 2.83
2740 3089 3.190874 GGAAACGTTGCATGGAAAACAA 58.809 40.909 8.91 0.00 0.00 2.83
2741 3090 3.619038 GGAAACGTTGCATGGAAAACAAA 59.381 39.130 8.91 0.00 0.00 2.83
2742 3091 4.093556 GGAAACGTTGCATGGAAAACAAAA 59.906 37.500 8.91 0.00 0.00 2.44
2743 3092 5.390991 GGAAACGTTGCATGGAAAACAAAAA 60.391 36.000 8.91 0.00 0.00 1.94
2774 3123 4.739046 GGAAACGCAAGATCTATCCATG 57.261 45.455 0.00 0.00 43.62 3.66
2775 3124 3.499918 GGAAACGCAAGATCTATCCATGG 59.500 47.826 4.97 4.97 43.62 3.66
2776 3125 4.380531 GAAACGCAAGATCTATCCATGGA 58.619 43.478 18.88 18.88 43.62 3.41
2777 3126 3.674528 ACGCAAGATCTATCCATGGAG 57.325 47.619 21.33 7.68 43.62 3.86
2778 3127 3.234353 ACGCAAGATCTATCCATGGAGA 58.766 45.455 21.33 15.39 43.62 3.71
2779 3128 3.837146 ACGCAAGATCTATCCATGGAGAT 59.163 43.478 21.33 17.64 43.62 2.75
2780 3129 4.182339 CGCAAGATCTATCCATGGAGATG 58.818 47.826 21.33 11.34 43.02 2.90
2781 3130 3.940221 GCAAGATCTATCCATGGAGATGC 59.060 47.826 21.33 17.34 32.47 3.91
2782 3131 4.565028 GCAAGATCTATCCATGGAGATGCA 60.565 45.833 21.39 6.23 32.47 3.96
2783 3132 5.746284 CAAGATCTATCCATGGAGATGCAT 58.254 41.667 21.33 0.00 32.47 3.96
2784 3133 6.631992 GCAAGATCTATCCATGGAGATGCATA 60.632 42.308 21.39 8.30 32.47 3.14
2785 3134 6.734502 AGATCTATCCATGGAGATGCATAG 57.265 41.667 21.33 15.06 33.17 2.23
2786 3135 4.750021 TCTATCCATGGAGATGCATAGC 57.250 45.455 21.33 0.00 32.28 2.97
2787 3136 4.098894 TCTATCCATGGAGATGCATAGCA 58.901 43.478 21.33 3.76 44.86 3.49
2788 3137 3.801307 ATCCATGGAGATGCATAGCAA 57.199 42.857 21.33 0.00 43.62 3.91
2789 3138 2.854963 TCCATGGAGATGCATAGCAAC 58.145 47.619 11.44 0.00 43.62 4.17
2790 3139 1.534163 CCATGGAGATGCATAGCAACG 59.466 52.381 5.56 0.00 43.62 4.10
2791 3140 2.486918 CATGGAGATGCATAGCAACGA 58.513 47.619 0.00 0.00 43.62 3.85
2792 3141 2.229675 TGGAGATGCATAGCAACGAG 57.770 50.000 0.00 0.00 43.62 4.18
2793 3142 1.756538 TGGAGATGCATAGCAACGAGA 59.243 47.619 0.00 0.00 43.62 4.04
2794 3143 2.223900 TGGAGATGCATAGCAACGAGAG 60.224 50.000 0.00 0.00 43.62 3.20
2795 3144 2.402305 GAGATGCATAGCAACGAGAGG 58.598 52.381 0.00 0.00 43.62 3.69
2796 3145 1.069823 AGATGCATAGCAACGAGAGGG 59.930 52.381 0.00 0.00 43.62 4.30
2797 3146 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
2798 3147 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
2799 3148 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2800 3149 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
2801 3150 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
2802 3151 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
2803 3152 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
2804 3153 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
2805 3154 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
2806 3155 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
2807 3156 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
2808 3157 0.322997 CGAGAGGGGAGAGTGTGTCT 60.323 60.000 0.00 0.00 38.71 3.41
2809 3158 1.065345 CGAGAGGGGAGAGTGTGTCTA 60.065 57.143 0.00 0.00 34.71 2.59
2810 3159 2.371306 GAGAGGGGAGAGTGTGTCTAC 58.629 57.143 0.00 0.00 34.71 2.59
2811 3160 1.096416 GAGGGGAGAGTGTGTCTACG 58.904 60.000 0.00 0.00 36.91 3.51
2812 3161 0.404812 AGGGGAGAGTGTGTCTACGT 59.595 55.000 0.00 0.00 36.91 3.57
2813 3162 1.632409 AGGGGAGAGTGTGTCTACGTA 59.368 52.381 0.00 0.00 36.91 3.57
2814 3163 1.742268 GGGGAGAGTGTGTCTACGTAC 59.258 57.143 0.00 0.00 36.91 3.67
2815 3164 1.742268 GGGAGAGTGTGTCTACGTACC 59.258 57.143 0.00 0.00 36.91 3.34
2816 3165 1.742268 GGAGAGTGTGTCTACGTACCC 59.258 57.143 0.00 0.00 34.71 3.69
2817 3166 2.617532 GGAGAGTGTGTCTACGTACCCT 60.618 54.545 0.00 0.00 34.71 4.34
2818 3167 2.677337 GAGAGTGTGTCTACGTACCCTC 59.323 54.545 0.00 0.00 34.71 4.30
2819 3168 1.396301 GAGTGTGTCTACGTACCCTCG 59.604 57.143 0.00 0.00 0.00 4.63
2820 3169 1.160137 GTGTGTCTACGTACCCTCGT 58.840 55.000 0.00 0.00 45.97 4.18
2821 3170 2.028112 AGTGTGTCTACGTACCCTCGTA 60.028 50.000 0.00 0.00 43.80 3.43
2827 3176 3.890527 ACGTACCCTCGTAGACCAT 57.109 52.632 0.00 0.00 42.35 3.55
2829 3178 3.281727 ACGTACCCTCGTAGACCATAA 57.718 47.619 0.00 0.00 42.35 1.90
2830 3179 3.209410 ACGTACCCTCGTAGACCATAAG 58.791 50.000 0.00 0.00 42.35 1.73
2831 3180 3.209410 CGTACCCTCGTAGACCATAAGT 58.791 50.000 0.00 0.00 0.00 2.24
2832 3181 3.003068 CGTACCCTCGTAGACCATAAGTG 59.997 52.174 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.604604 CCCAACACGAAGGTCACATT 58.395 50.000 0.00 0.00 0.00 2.71
1 2 0.250727 CCCCAACACGAAGGTCACAT 60.251 55.000 0.00 0.00 0.00 3.21
2 3 1.147376 CCCCAACACGAAGGTCACA 59.853 57.895 0.00 0.00 0.00 3.58
27 28 1.537776 GGCGGTGACATCAGAGATGAG 60.538 57.143 13.46 1.80 0.00 2.90
29 30 0.463204 AGGCGGTGACATCAGAGATG 59.537 55.000 5.50 5.50 0.00 2.90
34 35 1.134580 AGATGAAGGCGGTGACATCAG 60.135 52.381 0.00 0.00 40.74 2.90
35 36 0.904649 AGATGAAGGCGGTGACATCA 59.095 50.000 0.00 0.00 40.74 3.07
42 43 1.611673 CCAGTCAAAGATGAAGGCGGT 60.612 52.381 0.00 0.00 37.30 5.68
45 46 2.485814 GTGACCAGTCAAAGATGAAGGC 59.514 50.000 1.23 0.00 41.85 4.35
54 55 1.070786 GCCGAGGTGACCAGTCAAA 59.929 57.895 3.63 0.00 41.85 2.69
67 68 4.735132 TTTCGCGACCTGGCCGAG 62.735 66.667 9.15 2.48 0.00 4.63
90 91 0.457851 AAACTCTCGAGATCAGCCCG 59.542 55.000 17.03 4.74 0.00 6.13
91 92 1.472376 CCAAACTCTCGAGATCAGCCC 60.472 57.143 17.03 0.00 0.00 5.19
94 95 1.135257 ACGCCAAACTCTCGAGATCAG 60.135 52.381 17.03 7.13 0.00 2.90
96 97 1.135373 TGACGCCAAACTCTCGAGATC 60.135 52.381 17.03 8.49 0.00 2.75
97 98 0.888619 TGACGCCAAACTCTCGAGAT 59.111 50.000 17.03 0.00 0.00 2.75
98 99 0.888619 ATGACGCCAAACTCTCGAGA 59.111 50.000 15.70 15.70 0.00 4.04
117 120 3.086391 GCTGCTCCTGGATCTCGCA 62.086 63.158 7.94 7.94 0.00 5.10
120 123 1.047596 TCCTGCTGCTCCTGGATCTC 61.048 60.000 0.00 0.00 0.00 2.75
126 129 4.834453 CGGCTCCTGCTGCTCCTG 62.834 72.222 0.00 0.00 38.88 3.86
132 135 2.435586 CTGAACCGGCTCCTGCTG 60.436 66.667 0.00 0.00 44.81 4.41
149 152 4.046938 TCCGATCTAACATTGAGTCTGC 57.953 45.455 0.00 0.00 0.00 4.26
186 190 5.451381 GGTGGGTCGAAAATTTTGACTTTCT 60.451 40.000 21.44 0.00 33.21 2.52
197 201 0.538746 GTGGTGGGTGGGTCGAAAAT 60.539 55.000 0.00 0.00 0.00 1.82
230 234 1.748493 GAGAGTGAGCTCCTCGACATT 59.252 52.381 19.96 8.02 42.59 2.71
241 245 2.983512 TCCCTCTTGGAGAGTGAGC 58.016 57.895 4.43 0.00 40.72 4.26
253 257 1.622811 GCATCCTCGATGAATCCCTCT 59.377 52.381 5.82 0.00 42.09 3.69
260 264 2.497273 TGTCTTCTGCATCCTCGATGAA 59.503 45.455 5.82 0.00 42.09 2.57
271 275 0.907486 CCTCCTCCATGTCTTCTGCA 59.093 55.000 0.00 0.00 0.00 4.41
305 309 2.032924 GTGTTGACAGTTGGTTGCCTAC 59.967 50.000 0.00 0.00 0.00 3.18
312 316 1.078072 TGCCGTGTTGACAGTTGGT 60.078 52.632 0.00 0.00 0.00 3.67
313 317 1.355210 GTGCCGTGTTGACAGTTGG 59.645 57.895 0.00 0.00 0.00 3.77
318 322 2.110213 GAGGGTGCCGTGTTGACA 59.890 61.111 0.00 0.00 0.00 3.58
319 323 2.110213 TGAGGGTGCCGTGTTGAC 59.890 61.111 0.00 0.00 0.00 3.18
325 329 2.217038 ACTGATGTGAGGGTGCCGT 61.217 57.895 0.00 0.00 0.00 5.68
326 330 1.742880 CACTGATGTGAGGGTGCCG 60.743 63.158 0.00 0.00 46.55 5.69
327 331 1.377725 CCACTGATGTGAGGGTGCC 60.378 63.158 0.00 0.00 46.55 5.01
328 332 2.042831 GCCACTGATGTGAGGGTGC 61.043 63.158 0.00 0.00 46.55 5.01
329 333 0.675837 CTGCCACTGATGTGAGGGTG 60.676 60.000 0.00 0.00 46.55 4.61
330 334 0.837691 TCTGCCACTGATGTGAGGGT 60.838 55.000 0.00 0.00 46.55 4.34
331 335 0.545171 ATCTGCCACTGATGTGAGGG 59.455 55.000 0.00 0.00 46.55 4.30
334 338 1.904537 AGTCATCTGCCACTGATGTGA 59.095 47.619 12.35 0.00 46.55 3.58
335 339 2.398252 AGTCATCTGCCACTGATGTG 57.602 50.000 12.35 0.00 39.63 3.21
336 340 2.676176 CGAAGTCATCTGCCACTGATGT 60.676 50.000 12.35 0.00 39.63 3.06
337 341 1.931841 CGAAGTCATCTGCCACTGATG 59.068 52.381 7.83 7.83 39.87 3.07
338 342 1.827344 TCGAAGTCATCTGCCACTGAT 59.173 47.619 0.00 0.00 0.00 2.90
339 343 1.256812 TCGAAGTCATCTGCCACTGA 58.743 50.000 0.00 0.00 0.00 3.41
349 354 9.684448 CATGTATAACTCATAGTTCGAAGTCAT 57.316 33.333 9.20 0.00 39.51 3.06
356 361 6.641314 GTCCACCATGTATAACTCATAGTTCG 59.359 42.308 0.00 0.00 39.51 3.95
359 364 7.344612 TCTTGTCCACCATGTATAACTCATAGT 59.655 37.037 0.00 0.00 0.00 2.12
362 367 6.560003 TCTTGTCCACCATGTATAACTCAT 57.440 37.500 0.00 0.00 0.00 2.90
366 371 4.638865 GGGTTCTTGTCCACCATGTATAAC 59.361 45.833 0.00 0.00 34.36 1.89
369 374 2.025321 GGGGTTCTTGTCCACCATGTAT 60.025 50.000 0.00 0.00 34.36 2.29
373 378 0.112412 GTGGGGTTCTTGTCCACCAT 59.888 55.000 0.00 0.00 43.65 3.55
383 388 1.153756 CCTTGGCTTGTGGGGTTCT 59.846 57.895 0.00 0.00 0.00 3.01
389 394 3.058160 CCGAGCCTTGGCTTGTGG 61.058 66.667 23.05 17.35 0.00 4.17
408 413 0.745845 ATCATTCTCCGTGCCACTGC 60.746 55.000 0.00 0.00 38.26 4.40
409 414 1.293924 GATCATTCTCCGTGCCACTG 58.706 55.000 0.00 0.00 0.00 3.66
417 422 1.954382 TGTACTCGGGATCATTCTCCG 59.046 52.381 0.00 1.32 44.59 4.63
422 427 2.035961 CCGTCATGTACTCGGGATCATT 59.964 50.000 0.00 0.00 40.49 2.57
425 430 3.867723 CCGTCATGTACTCGGGATC 57.132 57.895 0.00 0.00 40.49 3.36
459 465 1.276421 AGATGAACGACTCCCTTGTGG 59.724 52.381 0.00 0.00 0.00 4.17
460 466 2.751166 AGATGAACGACTCCCTTGTG 57.249 50.000 0.00 0.00 0.00 3.33
461 467 3.193691 CACTAGATGAACGACTCCCTTGT 59.806 47.826 0.00 0.00 0.00 3.16
462 468 3.775202 CACTAGATGAACGACTCCCTTG 58.225 50.000 0.00 0.00 0.00 3.61
463 469 2.166664 GCACTAGATGAACGACTCCCTT 59.833 50.000 0.00 0.00 0.00 3.95
464 470 1.751924 GCACTAGATGAACGACTCCCT 59.248 52.381 0.00 0.00 0.00 4.20
465 471 1.751924 AGCACTAGATGAACGACTCCC 59.248 52.381 0.00 0.00 0.00 4.30
466 472 3.377485 TGTAGCACTAGATGAACGACTCC 59.623 47.826 0.00 0.00 0.00 3.85
467 473 4.617808 TGTAGCACTAGATGAACGACTC 57.382 45.455 0.00 0.00 0.00 3.36
468 474 4.640647 TCATGTAGCACTAGATGAACGACT 59.359 41.667 13.43 0.00 41.14 4.18
469 475 4.921547 TCATGTAGCACTAGATGAACGAC 58.078 43.478 13.43 0.00 41.14 4.34
470 476 5.067805 ACATCATGTAGCACTAGATGAACGA 59.932 40.000 18.14 0.34 45.12 3.85
471 477 5.174579 CACATCATGTAGCACTAGATGAACG 59.825 44.000 18.14 14.90 45.12 3.95
472 478 5.464722 CCACATCATGTAGCACTAGATGAAC 59.535 44.000 18.14 0.00 45.12 3.18
473 479 5.363580 TCCACATCATGTAGCACTAGATGAA 59.636 40.000 18.14 2.79 45.12 2.57
474 480 4.895297 TCCACATCATGTAGCACTAGATGA 59.105 41.667 16.96 16.96 45.73 2.92
475 481 5.205759 TCCACATCATGTAGCACTAGATG 57.794 43.478 8.18 8.18 41.28 2.90
476 482 5.306419 ACATCCACATCATGTAGCACTAGAT 59.694 40.000 0.00 0.00 32.48 1.98
477 483 4.651045 ACATCCACATCATGTAGCACTAGA 59.349 41.667 0.00 0.00 32.48 2.43
478 484 4.748600 CACATCCACATCATGTAGCACTAG 59.251 45.833 0.00 0.00 32.48 2.57
479 485 4.443315 CCACATCCACATCATGTAGCACTA 60.443 45.833 0.00 0.00 32.48 2.74
480 486 3.538591 CACATCCACATCATGTAGCACT 58.461 45.455 0.00 0.00 32.48 4.40
481 487 2.615447 CCACATCCACATCATGTAGCAC 59.385 50.000 0.00 0.00 32.48 4.40
482 488 2.504996 TCCACATCCACATCATGTAGCA 59.495 45.455 0.00 0.00 32.48 3.49
483 489 3.198409 TCCACATCCACATCATGTAGC 57.802 47.619 0.00 0.00 32.48 3.58
484 490 4.132336 CCTTCCACATCCACATCATGTAG 58.868 47.826 0.00 0.00 32.48 2.74
485 491 3.779738 TCCTTCCACATCCACATCATGTA 59.220 43.478 0.00 0.00 32.48 2.29
486 492 2.577563 TCCTTCCACATCCACATCATGT 59.422 45.455 0.00 0.00 34.67 3.21
487 493 3.118149 TCTCCTTCCACATCCACATCATG 60.118 47.826 0.00 0.00 0.00 3.07
488 494 3.117745 TCTCCTTCCACATCCACATCAT 58.882 45.455 0.00 0.00 0.00 2.45
489 495 2.550175 TCTCCTTCCACATCCACATCA 58.450 47.619 0.00 0.00 0.00 3.07
490 496 3.274288 GTTCTCCTTCCACATCCACATC 58.726 50.000 0.00 0.00 0.00 3.06
491 497 2.025887 GGTTCTCCTTCCACATCCACAT 60.026 50.000 0.00 0.00 0.00 3.21
492 498 1.351017 GGTTCTCCTTCCACATCCACA 59.649 52.381 0.00 0.00 0.00 4.17
493 499 1.676014 CGGTTCTCCTTCCACATCCAC 60.676 57.143 0.00 0.00 0.00 4.02
494 500 0.613260 CGGTTCTCCTTCCACATCCA 59.387 55.000 0.00 0.00 0.00 3.41
495 501 0.107654 CCGGTTCTCCTTCCACATCC 60.108 60.000 0.00 0.00 0.00 3.51
496 502 0.902531 TCCGGTTCTCCTTCCACATC 59.097 55.000 0.00 0.00 0.00 3.06
497 503 1.210478 CATCCGGTTCTCCTTCCACAT 59.790 52.381 0.00 0.00 0.00 3.21
498 504 0.613260 CATCCGGTTCTCCTTCCACA 59.387 55.000 0.00 0.00 0.00 4.17
499 505 0.613777 ACATCCGGTTCTCCTTCCAC 59.386 55.000 0.00 0.00 0.00 4.02
500 506 0.902531 GACATCCGGTTCTCCTTCCA 59.097 55.000 0.00 0.00 0.00 3.53
501 507 0.179108 CGACATCCGGTTCTCCTTCC 60.179 60.000 0.00 0.00 33.91 3.46
502 508 3.347411 CGACATCCGGTTCTCCTTC 57.653 57.895 0.00 0.00 33.91 3.46
519 525 1.135024 CAATTTCATTCCCTGCACCCG 60.135 52.381 0.00 0.00 0.00 5.28
542 548 0.179189 CTCACTTTTTGATCGCCGCC 60.179 55.000 0.00 0.00 32.17 6.13
544 550 0.447801 CCCTCACTTTTTGATCGCCG 59.552 55.000 0.00 0.00 32.17 6.46
564 570 1.213296 GCCTGGTTATCCCTTCCTCA 58.787 55.000 0.00 0.00 0.00 3.86
566 572 1.216990 CTGCCTGGTTATCCCTTCCT 58.783 55.000 0.00 0.00 0.00 3.36
580 596 1.614824 CCCTTCTCACCTCCTGCCT 60.615 63.158 0.00 0.00 0.00 4.75
582 598 1.201429 TTCCCCTTCTCACCTCCTGC 61.201 60.000 0.00 0.00 0.00 4.85
585 601 0.621082 CCTTTCCCCTTCTCACCTCC 59.379 60.000 0.00 0.00 0.00 4.30
591 607 4.075682 CAGTTCTTTCCTTTCCCCTTCTC 58.924 47.826 0.00 0.00 0.00 2.87
599 615 3.092301 CCCATCCCAGTTCTTTCCTTTC 58.908 50.000 0.00 0.00 0.00 2.62
602 618 1.636003 GACCCATCCCAGTTCTTTCCT 59.364 52.381 0.00 0.00 0.00 3.36
706 722 3.181429 TGGGTTTTCCTCAGCTGAAGAAT 60.181 43.478 24.71 0.00 40.46 2.40
709 725 2.276732 TGGGTTTTCCTCAGCTGAAG 57.723 50.000 18.85 12.38 40.46 3.02
711 727 2.306847 GTTTGGGTTTTCCTCAGCTGA 58.693 47.619 17.19 17.19 40.46 4.26
712 728 1.001378 CGTTTGGGTTTTCCTCAGCTG 60.001 52.381 7.63 7.63 40.46 4.24
713 729 1.318576 CGTTTGGGTTTTCCTCAGCT 58.681 50.000 0.00 0.00 40.46 4.24
714 730 1.029681 ACGTTTGGGTTTTCCTCAGC 58.970 50.000 0.00 0.00 40.46 4.26
715 731 3.881089 AGTAACGTTTGGGTTTTCCTCAG 59.119 43.478 5.91 0.00 40.46 3.35
716 732 3.888583 AGTAACGTTTGGGTTTTCCTCA 58.111 40.909 5.91 0.00 40.46 3.86
717 733 4.906065 AAGTAACGTTTGGGTTTTCCTC 57.094 40.909 5.91 0.00 40.46 3.71
718 734 4.705991 TGAAAGTAACGTTTGGGTTTTCCT 59.294 37.500 5.91 0.00 40.46 3.36
719 735 4.996344 TGAAAGTAACGTTTGGGTTTTCC 58.004 39.130 5.91 0.00 39.75 3.13
720 736 6.267070 TCATGAAAGTAACGTTTGGGTTTTC 58.733 36.000 5.91 10.20 0.00 2.29
721 737 6.210287 TCATGAAAGTAACGTTTGGGTTTT 57.790 33.333 5.91 0.61 0.00 2.43
722 738 5.838531 TCATGAAAGTAACGTTTGGGTTT 57.161 34.783 5.91 1.26 0.00 3.27
723 739 6.399639 AATCATGAAAGTAACGTTTGGGTT 57.600 33.333 5.91 0.00 0.00 4.11
724 740 5.048294 GGAATCATGAAAGTAACGTTTGGGT 60.048 40.000 5.91 0.00 0.00 4.51
725 741 5.048364 TGGAATCATGAAAGTAACGTTTGGG 60.048 40.000 5.91 0.00 0.00 4.12
726 742 5.856455 GTGGAATCATGAAAGTAACGTTTGG 59.144 40.000 5.91 0.00 0.00 3.28
727 743 6.578545 CAGTGGAATCATGAAAGTAACGTTTG 59.421 38.462 5.91 0.00 0.00 2.93
728 744 6.485313 TCAGTGGAATCATGAAAGTAACGTTT 59.515 34.615 5.91 0.00 0.00 3.60
729 745 5.995282 TCAGTGGAATCATGAAAGTAACGTT 59.005 36.000 5.88 5.88 0.00 3.99
730 746 5.547465 TCAGTGGAATCATGAAAGTAACGT 58.453 37.500 0.00 0.00 0.00 3.99
731 747 6.147821 ACTTCAGTGGAATCATGAAAGTAACG 59.852 38.462 0.00 0.00 32.87 3.18
732 748 7.440523 ACTTCAGTGGAATCATGAAAGTAAC 57.559 36.000 0.00 0.00 32.87 2.50
733 749 8.375506 AGTACTTCAGTGGAATCATGAAAGTAA 58.624 33.333 11.88 0.00 32.87 2.24
734 750 7.907389 AGTACTTCAGTGGAATCATGAAAGTA 58.093 34.615 0.00 3.92 32.87 2.24
742 758 3.427573 TCGGAGTACTTCAGTGGAATCA 58.572 45.455 1.17 0.00 31.34 2.57
747 763 5.103000 CAGTTAATCGGAGTACTTCAGTGG 58.897 45.833 1.17 0.00 0.00 4.00
753 769 6.208994 ACAGAAGACAGTTAATCGGAGTACTT 59.791 38.462 0.00 0.00 0.00 2.24
757 773 5.470047 AACAGAAGACAGTTAATCGGAGT 57.530 39.130 0.00 0.00 0.00 3.85
759 775 6.073980 CGAAAAACAGAAGACAGTTAATCGGA 60.074 38.462 0.00 0.00 34.07 4.55
823 839 1.083489 CGTGAAAATAGGAAGGCGCA 58.917 50.000 10.83 0.00 0.00 6.09
878 899 3.728373 GTGCGGTTGGGGAGGGAT 61.728 66.667 0.00 0.00 0.00 3.85
1200 1520 3.007635 GAGAATTGGGAACGAACGGAAT 58.992 45.455 0.00 0.00 0.00 3.01
1361 1681 3.723348 GGTTGTCGTGGAAGGCGC 61.723 66.667 0.00 0.00 0.00 6.53
1538 1858 1.437986 GTCGGCTCGTCCATAAGCT 59.562 57.895 0.00 0.00 38.58 3.74
1542 1862 2.125326 CCAGGTCGGCTCGTCCATA 61.125 63.158 11.82 0.00 37.51 2.74
1543 1863 3.461773 CCAGGTCGGCTCGTCCAT 61.462 66.667 11.82 0.00 37.51 3.41
1611 1931 3.878519 CGCTCGTCCTCCTCCGTC 61.879 72.222 0.00 0.00 0.00 4.79
1771 2091 0.743345 GTGCCCTCGGGATTGTACAC 60.743 60.000 6.08 0.00 37.50 2.90
1897 2219 9.701098 ACACATACGTAAAATAAACAGAGAAGA 57.299 29.630 0.00 0.00 0.00 2.87
2063 2400 4.595538 ACGCGTGTTTGCTCCGGA 62.596 61.111 12.93 2.93 0.00 5.14
2083 2420 6.947903 TGACGTCGCATAACTATTTTTGTA 57.052 33.333 11.62 0.00 0.00 2.41
2110 2447 2.439507 AGAGGTGTGTGTGGAGATTTGT 59.560 45.455 0.00 0.00 0.00 2.83
2198 2535 4.616553 AGGTGTAGGTGGTGTGACATATA 58.383 43.478 0.00 0.00 0.00 0.86
2202 2539 1.965643 GTAGGTGTAGGTGGTGTGACA 59.034 52.381 0.00 0.00 0.00 3.58
2225 2567 3.900941 AGCACATTGTCGAAAAATGGAC 58.099 40.909 20.35 13.86 38.98 4.02
2337 2683 2.203771 GGCGTCCGGATCTGGAGAT 61.204 63.158 24.22 0.00 39.14 2.75
2338 2684 2.833582 GGCGTCCGGATCTGGAGA 60.834 66.667 24.22 0.00 39.14 3.71
2469 2815 2.094130 GGGTATTGGTAGCGAGGATAGC 60.094 54.545 0.00 0.00 36.79 2.97
2494 2841 0.688087 ATTGACGAGGGGAGGGAGAC 60.688 60.000 0.00 0.00 0.00 3.36
2498 2845 0.328258 AAACATTGACGAGGGGAGGG 59.672 55.000 0.00 0.00 0.00 4.30
2512 2859 2.294233 GCACATGTCACAGACCAAACAT 59.706 45.455 0.00 0.00 32.73 2.71
2524 2871 2.202703 CTGCCGCATTGCACATGTCA 62.203 55.000 9.69 0.00 36.04 3.58
2541 2888 2.015227 AAACAACAAGGGTGGCGCTG 62.015 55.000 7.64 0.00 0.00 5.18
2542 2889 1.756561 AAACAACAAGGGTGGCGCT 60.757 52.632 7.64 0.00 0.00 5.92
2553 2902 3.382227 TGACTCTCTACGGTCAAACAACA 59.618 43.478 0.00 0.00 39.16 3.33
2555 2904 3.243636 GGTGACTCTCTACGGTCAAACAA 60.244 47.826 0.00 0.00 42.88 2.83
2593 2942 2.499205 CATCGCGGCCTCAACCTA 59.501 61.111 6.13 0.00 0.00 3.08
2643 2992 1.003580 AGATGGCGAGGTTGTTGATGT 59.996 47.619 0.00 0.00 0.00 3.06
2649 2998 1.918293 TGGGAGATGGCGAGGTTGT 60.918 57.895 0.00 0.00 0.00 3.32
2651 3000 2.670148 GGTGGGAGATGGCGAGGTT 61.670 63.158 0.00 0.00 0.00 3.50
2665 3014 2.266055 GACGGAGCTTGAGGGTGG 59.734 66.667 0.00 0.00 0.00 4.61
2666 3015 2.125912 CGACGGAGCTTGAGGGTG 60.126 66.667 0.00 0.00 0.00 4.61
2667 3016 2.600769 ACGACGGAGCTTGAGGGT 60.601 61.111 0.00 0.00 0.00 4.34
2668 3017 2.125912 CACGACGGAGCTTGAGGG 60.126 66.667 0.00 0.00 0.00 4.30
2669 3018 1.444553 GACACGACGGAGCTTGAGG 60.445 63.158 0.00 0.00 0.00 3.86
2670 3019 0.109086 ATGACACGACGGAGCTTGAG 60.109 55.000 0.00 0.00 0.00 3.02
2671 3020 0.109272 GATGACACGACGGAGCTTGA 60.109 55.000 0.00 0.00 0.00 3.02
2672 3021 1.406219 CGATGACACGACGGAGCTTG 61.406 60.000 0.00 0.00 35.09 4.01
2673 3022 1.154016 CGATGACACGACGGAGCTT 60.154 57.895 0.00 0.00 35.09 3.74
2674 3023 2.038837 TCGATGACACGACGGAGCT 61.039 57.895 0.00 0.00 37.37 4.09
2675 3024 2.483745 TCGATGACACGACGGAGC 59.516 61.111 0.00 0.00 37.37 4.70
2681 3030 0.952010 TGACGAGGTCGATGACACGA 60.952 55.000 17.44 0.00 43.02 4.35
2682 3031 0.109919 TTGACGAGGTCGATGACACG 60.110 55.000 6.35 11.83 43.02 4.49
2683 3032 1.337821 GTTGACGAGGTCGATGACAC 58.662 55.000 6.35 0.00 43.02 3.67
2684 3033 0.109919 CGTTGACGAGGTCGATGACA 60.110 55.000 6.35 0.00 43.02 3.58
2685 3034 0.109873 ACGTTGACGAGGTCGATGAC 60.110 55.000 10.87 0.72 43.02 3.06
2686 3035 0.594602 AACGTTGACGAGGTCGATGA 59.405 50.000 10.87 0.00 43.02 2.92
2687 3036 0.708370 CAACGTTGACGAGGTCGATG 59.292 55.000 23.90 1.73 43.02 3.84
2688 3037 0.313043 ACAACGTTGACGAGGTCGAT 59.687 50.000 33.66 5.05 43.02 3.59
2689 3038 0.317269 GACAACGTTGACGAGGTCGA 60.317 55.000 33.66 0.00 43.02 4.20
2690 3039 1.273455 GGACAACGTTGACGAGGTCG 61.273 60.000 33.66 5.07 42.25 4.79
2691 3040 0.031721 AGGACAACGTTGACGAGGTC 59.968 55.000 33.66 18.87 43.02 3.85
2692 3041 0.031721 GAGGACAACGTTGACGAGGT 59.968 55.000 33.66 11.05 43.02 3.85
2693 3042 0.666577 GGAGGACAACGTTGACGAGG 60.667 60.000 33.66 7.43 43.02 4.63
2694 3043 0.666577 GGGAGGACAACGTTGACGAG 60.667 60.000 33.66 8.22 43.02 4.18
2695 3044 1.111116 AGGGAGGACAACGTTGACGA 61.111 55.000 33.66 0.00 43.02 4.20
2696 3045 0.944311 CAGGGAGGACAACGTTGACG 60.944 60.000 33.66 9.02 46.33 4.35
2697 3046 0.106149 ACAGGGAGGACAACGTTGAC 59.894 55.000 33.66 26.67 0.00 3.18
2698 3047 1.616865 CTACAGGGAGGACAACGTTGA 59.383 52.381 33.66 7.04 0.00 3.18
2699 3048 1.337823 CCTACAGGGAGGACAACGTTG 60.338 57.143 26.20 26.20 39.15 4.10
2700 3049 0.974383 CCTACAGGGAGGACAACGTT 59.026 55.000 0.00 0.00 39.15 3.99
2701 3050 2.667348 CCTACAGGGAGGACAACGT 58.333 57.895 0.00 0.00 39.15 3.99
2712 3061 1.468520 CATGCAACGTTTCCCTACAGG 59.531 52.381 0.00 0.00 0.00 4.00
2713 3062 1.468520 CCATGCAACGTTTCCCTACAG 59.531 52.381 0.00 0.00 0.00 2.74
2714 3063 1.072489 TCCATGCAACGTTTCCCTACA 59.928 47.619 0.00 0.00 0.00 2.74
2715 3064 1.816074 TCCATGCAACGTTTCCCTAC 58.184 50.000 0.00 0.00 0.00 3.18
2716 3065 2.570415 TTCCATGCAACGTTTCCCTA 57.430 45.000 0.00 0.00 0.00 3.53
2717 3066 1.698506 TTTCCATGCAACGTTTCCCT 58.301 45.000 0.00 0.00 0.00 4.20
2718 3067 2.131972 GTTTTCCATGCAACGTTTCCC 58.868 47.619 0.00 0.00 0.00 3.97
2719 3068 2.815478 TGTTTTCCATGCAACGTTTCC 58.185 42.857 0.00 0.00 0.00 3.13
2720 3069 4.849111 TTTGTTTTCCATGCAACGTTTC 57.151 36.364 0.00 0.00 0.00 2.78
2721 3070 5.613358 TTTTTGTTTTCCATGCAACGTTT 57.387 30.435 0.00 0.00 0.00 3.60
2742 3091 7.758495 AGATCTTGCGTTTCCGTATAATTTTT 58.242 30.769 0.00 0.00 36.15 1.94
2743 3092 7.316544 AGATCTTGCGTTTCCGTATAATTTT 57.683 32.000 0.00 0.00 36.15 1.82
2744 3093 6.920569 AGATCTTGCGTTTCCGTATAATTT 57.079 33.333 0.00 0.00 36.15 1.82
2745 3094 7.331193 GGATAGATCTTGCGTTTCCGTATAATT 59.669 37.037 0.00 0.00 36.15 1.40
2746 3095 6.812160 GGATAGATCTTGCGTTTCCGTATAAT 59.188 38.462 0.00 0.00 36.15 1.28
2747 3096 6.154445 GGATAGATCTTGCGTTTCCGTATAA 58.846 40.000 0.00 0.00 36.15 0.98
2748 3097 5.242171 TGGATAGATCTTGCGTTTCCGTATA 59.758 40.000 0.00 0.00 36.15 1.47
2749 3098 4.038763 TGGATAGATCTTGCGTTTCCGTAT 59.961 41.667 0.00 0.00 36.15 3.06
2750 3099 3.382227 TGGATAGATCTTGCGTTTCCGTA 59.618 43.478 0.00 0.00 36.15 4.02
2751 3100 2.167693 TGGATAGATCTTGCGTTTCCGT 59.832 45.455 0.00 0.00 36.15 4.69
2752 3101 2.821546 TGGATAGATCTTGCGTTTCCG 58.178 47.619 0.00 0.00 37.07 4.30
2753 3102 3.499918 CCATGGATAGATCTTGCGTTTCC 59.500 47.826 5.56 0.00 0.00 3.13
2754 3103 4.380531 TCCATGGATAGATCTTGCGTTTC 58.619 43.478 11.44 0.00 0.00 2.78
2755 3104 4.101585 TCTCCATGGATAGATCTTGCGTTT 59.898 41.667 16.63 0.00 0.00 3.60
2756 3105 3.643320 TCTCCATGGATAGATCTTGCGTT 59.357 43.478 16.63 0.00 0.00 4.84
2757 3106 3.234353 TCTCCATGGATAGATCTTGCGT 58.766 45.455 16.63 0.00 0.00 5.24
2758 3107 3.949842 TCTCCATGGATAGATCTTGCG 57.050 47.619 16.63 0.00 0.00 4.85
2759 3108 3.940221 GCATCTCCATGGATAGATCTTGC 59.060 47.826 16.63 12.79 29.93 4.01
2760 3109 5.161943 TGCATCTCCATGGATAGATCTTG 57.838 43.478 16.63 6.79 29.93 3.02
2767 3116 4.582869 GTTGCTATGCATCTCCATGGATA 58.417 43.478 16.63 8.92 41.14 2.59
2768 3117 3.418995 GTTGCTATGCATCTCCATGGAT 58.581 45.455 16.63 1.02 43.17 3.41
2769 3118 2.807837 CGTTGCTATGCATCTCCATGGA 60.808 50.000 15.27 15.27 38.76 3.41
2770 3119 1.534163 CGTTGCTATGCATCTCCATGG 59.466 52.381 4.97 4.97 38.76 3.66
2771 3120 2.479275 CTCGTTGCTATGCATCTCCATG 59.521 50.000 0.19 0.00 38.76 3.66
2772 3121 2.366590 TCTCGTTGCTATGCATCTCCAT 59.633 45.455 0.19 0.00 38.76 3.41
2773 3122 1.756538 TCTCGTTGCTATGCATCTCCA 59.243 47.619 0.19 0.00 38.76 3.86
2774 3123 2.402305 CTCTCGTTGCTATGCATCTCC 58.598 52.381 0.19 0.00 38.76 3.71
2775 3124 2.402305 CCTCTCGTTGCTATGCATCTC 58.598 52.381 0.19 0.00 38.76 2.75
2776 3125 1.069823 CCCTCTCGTTGCTATGCATCT 59.930 52.381 0.19 0.00 38.76 2.90
2777 3126 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
2778 3127 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
2779 3128 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
2780 3129 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
2781 3130 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
2782 3131 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2783 3132 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
2784 3133 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
2785 3134 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
2786 3135 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
2787 3136 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
2788 3137 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
2789 3138 0.322997 AGACACACTCTCCCCTCTCG 60.323 60.000 0.00 0.00 0.00 4.04
2790 3139 2.371306 GTAGACACACTCTCCCCTCTC 58.629 57.143 0.00 0.00 0.00 3.20
2791 3140 1.340211 CGTAGACACACTCTCCCCTCT 60.340 57.143 0.00 0.00 0.00 3.69
2792 3141 1.096416 CGTAGACACACTCTCCCCTC 58.904 60.000 0.00 0.00 0.00 4.30
2793 3142 0.404812 ACGTAGACACACTCTCCCCT 59.595 55.000 0.00 0.00 0.00 4.79
2794 3143 1.742268 GTACGTAGACACACTCTCCCC 59.258 57.143 0.00 0.00 0.00 4.81
2795 3144 1.742268 GGTACGTAGACACACTCTCCC 59.258 57.143 0.00 0.00 0.00 4.30
2796 3145 1.742268 GGGTACGTAGACACACTCTCC 59.258 57.143 0.00 0.00 0.00 3.71
2797 3146 2.677337 GAGGGTACGTAGACACACTCTC 59.323 54.545 10.55 4.79 41.06 3.20
2798 3147 2.709213 GAGGGTACGTAGACACACTCT 58.291 52.381 10.55 0.00 41.06 3.24
2799 3148 1.396301 CGAGGGTACGTAGACACACTC 59.604 57.143 8.17 8.17 40.93 3.51
2800 3149 1.271054 ACGAGGGTACGTAGACACACT 60.271 52.381 0.00 0.00 44.72 3.55
2801 3150 1.160137 ACGAGGGTACGTAGACACAC 58.840 55.000 0.00 0.00 44.72 3.82
2802 3151 2.760634 TACGAGGGTACGTAGACACA 57.239 50.000 0.00 0.00 44.72 3.72
2808 3157 4.141711 ACTTATGGTCTACGAGGGTACGTA 60.142 45.833 0.00 0.00 44.72 3.57
2810 3159 3.003068 CACTTATGGTCTACGAGGGTACG 59.997 52.174 0.00 0.00 39.31 3.67
2811 3160 3.317430 CCACTTATGGTCTACGAGGGTAC 59.683 52.174 0.00 0.00 41.64 3.34
2812 3161 3.559069 CCACTTATGGTCTACGAGGGTA 58.441 50.000 0.00 0.00 41.64 3.69
2813 3162 2.385803 CCACTTATGGTCTACGAGGGT 58.614 52.381 0.00 0.00 41.64 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.