Multiple sequence alignment - TraesCS3A01G184600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G184600 chr3A 100.000 2576 0 0 1 2576 215485140 215482565 0.000000e+00 4758
1 TraesCS3A01G184600 chr7D 96.439 983 33 2 917 1898 86146780 86147761 0.000000e+00 1620
2 TraesCS3A01G184600 chr3D 94.354 921 44 5 1 916 175424592 175423675 0.000000e+00 1406
3 TraesCS3A01G184600 chr3D 91.679 685 53 4 1895 2576 175423691 175423008 0.000000e+00 946
4 TraesCS3A01G184600 chr3D 74.211 729 157 27 61 765 153859693 153858972 2.520000e-70 276
5 TraesCS3A01G184600 chr3D 75.327 535 98 24 341 847 88350103 88349575 2.580000e-55 226
6 TraesCS3A01G184600 chr5D 89.181 989 98 9 917 1900 561594292 561595276 0.000000e+00 1225
7 TraesCS3A01G184600 chr5D 83.232 990 155 10 917 1902 88178146 88179128 0.000000e+00 898
8 TraesCS3A01G184600 chr4D 88.945 986 104 5 917 1899 91068079 91067096 0.000000e+00 1212
9 TraesCS3A01G184600 chr2D 88.438 986 98 8 917 1899 29828561 29829533 0.000000e+00 1175
10 TraesCS3A01G184600 chr2A 88.134 986 111 6 917 1899 756353131 756352149 0.000000e+00 1168
11 TraesCS3A01G184600 chrUn 87.815 993 102 11 917 1904 94832845 94831867 0.000000e+00 1146
12 TraesCS3A01G184600 chrUn 87.159 989 100 11 917 1902 306064365 306065329 0.000000e+00 1098
13 TraesCS3A01G184600 chr2B 87.260 989 99 11 917 1902 691515907 691516871 0.000000e+00 1103
14 TraesCS3A01G184600 chr2B 75.907 386 87 6 56 437 21228299 21228682 2.620000e-45 193
15 TraesCS3A01G184600 chr3B 90.962 686 33 13 1893 2576 254782366 254781708 0.000000e+00 896
16 TraesCS3A01G184600 chr3B 95.035 564 22 5 351 912 254829431 254828872 0.000000e+00 881
17 TraesCS3A01G184600 chr3B 96.043 278 9 2 93 368 254836788 254836511 3.910000e-123 451
18 TraesCS3A01G184600 chr3B 74.298 712 151 24 61 747 227139880 227140584 3.270000e-69 272
19 TraesCS3A01G184600 chr3B 95.699 93 4 0 1 93 254837442 254837350 1.600000e-32 150
20 TraesCS3A01G184600 chr6A 85.986 421 58 1 917 1337 573525824 573525405 1.410000e-122 449
21 TraesCS3A01G184600 chr6A 81.006 537 100 2 1375 1910 573516520 573515985 2.370000e-115 425
22 TraesCS3A01G184600 chr1A 73.836 451 103 13 27 469 451376816 451376373 5.700000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G184600 chr3A 215482565 215485140 2575 True 4758.0 4758 100.0000 1 2576 1 chr3A.!!$R1 2575
1 TraesCS3A01G184600 chr7D 86146780 86147761 981 False 1620.0 1620 96.4390 917 1898 1 chr7D.!!$F1 981
2 TraesCS3A01G184600 chr3D 175423008 175424592 1584 True 1176.0 1406 93.0165 1 2576 2 chr3D.!!$R3 2575
3 TraesCS3A01G184600 chr3D 153858972 153859693 721 True 276.0 276 74.2110 61 765 1 chr3D.!!$R2 704
4 TraesCS3A01G184600 chr3D 88349575 88350103 528 True 226.0 226 75.3270 341 847 1 chr3D.!!$R1 506
5 TraesCS3A01G184600 chr5D 561594292 561595276 984 False 1225.0 1225 89.1810 917 1900 1 chr5D.!!$F2 983
6 TraesCS3A01G184600 chr5D 88178146 88179128 982 False 898.0 898 83.2320 917 1902 1 chr5D.!!$F1 985
7 TraesCS3A01G184600 chr4D 91067096 91068079 983 True 1212.0 1212 88.9450 917 1899 1 chr4D.!!$R1 982
8 TraesCS3A01G184600 chr2D 29828561 29829533 972 False 1175.0 1175 88.4380 917 1899 1 chr2D.!!$F1 982
9 TraesCS3A01G184600 chr2A 756352149 756353131 982 True 1168.0 1168 88.1340 917 1899 1 chr2A.!!$R1 982
10 TraesCS3A01G184600 chrUn 94831867 94832845 978 True 1146.0 1146 87.8150 917 1904 1 chrUn.!!$R1 987
11 TraesCS3A01G184600 chrUn 306064365 306065329 964 False 1098.0 1098 87.1590 917 1902 1 chrUn.!!$F1 985
12 TraesCS3A01G184600 chr2B 691515907 691516871 964 False 1103.0 1103 87.2600 917 1902 1 chr2B.!!$F2 985
13 TraesCS3A01G184600 chr3B 254781708 254782366 658 True 896.0 896 90.9620 1893 2576 1 chr3B.!!$R1 683
14 TraesCS3A01G184600 chr3B 254828872 254829431 559 True 881.0 881 95.0350 351 912 1 chr3B.!!$R2 561
15 TraesCS3A01G184600 chr3B 254836511 254837442 931 True 300.5 451 95.8710 1 368 2 chr3B.!!$R3 367
16 TraesCS3A01G184600 chr3B 227139880 227140584 704 False 272.0 272 74.2980 61 747 1 chr3B.!!$F1 686
17 TraesCS3A01G184600 chr6A 573515985 573516520 535 True 425.0 425 81.0060 1375 1910 1 chr6A.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 1281 0.037326 TAGCGATGATGATTCCCGGC 60.037 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 3095 0.032952 GGTGTAGTCACTGAACGCCA 59.967 55.0 5.55 0.0 42.2 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 4.991153 TGTCTAGCATACTTCTGGACAG 57.009 45.455 5.32 0.00 43.81 3.51
190 756 1.763968 AGCACTAGTGGCTCACGATA 58.236 50.000 23.95 0.00 36.81 2.92
435 1003 7.686438 TCAGTGAAAGTATGTAAATGCATGT 57.314 32.000 0.00 0.00 0.00 3.21
439 1007 8.742777 AGTGAAAGTATGTAAATGCATGTTGAT 58.257 29.630 0.00 0.00 0.00 2.57
449 1017 9.346005 TGTAAATGCATGTTGATATCTTCAGAT 57.654 29.630 0.00 0.00 35.27 2.90
458 1026 6.017960 TTGATATCTTCAGATGCGGAGCCA 62.018 45.833 3.98 0.00 45.41 4.75
459 1027 7.261853 TTGATATCTTCAGATGCGGAGCCAT 62.262 44.000 3.98 0.00 45.41 4.40
516 1084 6.088085 GTGTTGTTTAATCTCAAATTGCTCGG 59.912 38.462 0.00 0.00 0.00 4.63
545 1113 1.337071 TCAGGTAAAGCGATAGGAGCG 59.663 52.381 0.00 0.00 40.04 5.03
563 1131 4.201208 AGCGCACATAAATTTCTCATCG 57.799 40.909 11.47 0.00 0.00 3.84
577 1145 2.154462 CTCATCGGGAGTTGCAAAGTT 58.846 47.619 0.00 0.00 38.90 2.66
594 1162 4.830826 AAGTTCCTAAGTTTCTTTGCCG 57.169 40.909 0.00 0.00 0.00 5.69
605 1173 4.803613 AGTTTCTTTGCCGTGACAAATTTC 59.196 37.500 0.00 0.00 38.76 2.17
608 1176 0.312416 TTGCCGTGACAAATTTCGGG 59.688 50.000 15.42 2.66 42.71 5.14
618 1186 6.472808 CGTGACAAATTTCGGGTTTAAGAAAA 59.527 34.615 0.00 0.00 39.42 2.29
708 1278 1.625818 AGGGTAGCGATGATGATTCCC 59.374 52.381 0.00 0.00 0.00 3.97
709 1279 1.673033 GGGTAGCGATGATGATTCCCG 60.673 57.143 0.00 0.00 0.00 5.14
710 1280 1.673033 GGTAGCGATGATGATTCCCGG 60.673 57.143 0.00 0.00 0.00 5.73
711 1281 0.037326 TAGCGATGATGATTCCCGGC 60.037 55.000 0.00 0.00 0.00 6.13
712 1282 1.597854 GCGATGATGATTCCCGGCA 60.598 57.895 0.00 0.00 0.00 5.69
713 1283 1.165907 GCGATGATGATTCCCGGCAA 61.166 55.000 0.00 0.00 0.00 4.52
714 1284 0.588252 CGATGATGATTCCCGGCAAC 59.412 55.000 0.00 0.00 0.00 4.17
715 1285 1.679139 GATGATGATTCCCGGCAACA 58.321 50.000 0.00 0.00 0.00 3.33
716 1286 2.023673 GATGATGATTCCCGGCAACAA 58.976 47.619 0.00 0.00 0.00 2.83
717 1287 1.173043 TGATGATTCCCGGCAACAAC 58.827 50.000 0.00 0.00 0.00 3.32
718 1288 0.098728 GATGATTCCCGGCAACAACG 59.901 55.000 0.00 0.00 0.00 4.10
719 1289 1.933115 ATGATTCCCGGCAACAACGC 61.933 55.000 0.00 0.00 0.00 4.84
720 1290 2.596046 ATTCCCGGCAACAACGCA 60.596 55.556 0.00 0.00 0.00 5.24
721 1291 2.527547 GATTCCCGGCAACAACGCAG 62.528 60.000 0.00 0.00 0.00 5.18
722 1292 3.758973 TTCCCGGCAACAACGCAGA 62.759 57.895 0.00 0.00 0.00 4.26
723 1293 3.283684 CCCGGCAACAACGCAGAA 61.284 61.111 0.00 0.00 0.00 3.02
724 1294 2.718731 CCGGCAACAACGCAGAAA 59.281 55.556 0.00 0.00 0.00 2.52
725 1295 1.064946 CCGGCAACAACGCAGAAAA 59.935 52.632 0.00 0.00 0.00 2.29
726 1296 0.318614 CCGGCAACAACGCAGAAAAT 60.319 50.000 0.00 0.00 0.00 1.82
727 1297 0.777631 CGGCAACAACGCAGAAAATG 59.222 50.000 0.00 0.00 0.00 2.32
728 1298 1.139163 GGCAACAACGCAGAAAATGG 58.861 50.000 0.00 0.00 0.00 3.16
729 1299 1.537990 GGCAACAACGCAGAAAATGGT 60.538 47.619 0.00 0.00 0.00 3.55
730 1300 2.200899 GCAACAACGCAGAAAATGGTT 58.799 42.857 0.00 0.00 0.00 3.67
731 1301 2.033832 GCAACAACGCAGAAAATGGTTG 60.034 45.455 0.00 0.00 41.76 3.77
732 1302 3.443037 CAACAACGCAGAAAATGGTTGA 58.557 40.909 9.46 0.00 40.04 3.18
733 1303 4.050553 CAACAACGCAGAAAATGGTTGAT 58.949 39.130 9.46 0.00 40.04 2.57
734 1304 4.320608 ACAACGCAGAAAATGGTTGATT 57.679 36.364 9.46 0.00 40.04 2.57
735 1305 5.446143 ACAACGCAGAAAATGGTTGATTA 57.554 34.783 9.46 0.00 40.04 1.75
736 1306 5.219633 ACAACGCAGAAAATGGTTGATTAC 58.780 37.500 9.46 0.00 40.04 1.89
747 1317 2.089201 GGTTGATTACCTTTGACCCGG 58.911 52.381 0.00 0.00 44.10 5.73
748 1318 1.471287 GTTGATTACCTTTGACCCGGC 59.529 52.381 0.00 0.00 0.00 6.13
749 1319 0.988832 TGATTACCTTTGACCCGGCT 59.011 50.000 0.00 0.00 0.00 5.52
750 1320 2.189676 TGATTACCTTTGACCCGGCTA 58.810 47.619 0.00 0.00 0.00 3.93
751 1321 2.775384 TGATTACCTTTGACCCGGCTAT 59.225 45.455 0.00 0.00 0.00 2.97
752 1322 2.702592 TTACCTTTGACCCGGCTATG 57.297 50.000 0.00 0.00 0.00 2.23
753 1323 0.834612 TACCTTTGACCCGGCTATGG 59.165 55.000 0.00 0.00 0.00 2.74
754 1324 0.912487 ACCTTTGACCCGGCTATGGA 60.912 55.000 0.00 0.00 0.00 3.41
755 1325 0.474184 CCTTTGACCCGGCTATGGAT 59.526 55.000 0.00 0.00 0.00 3.41
756 1326 1.597742 CTTTGACCCGGCTATGGATG 58.402 55.000 0.00 0.00 0.00 3.51
757 1327 0.916086 TTTGACCCGGCTATGGATGT 59.084 50.000 0.00 0.00 0.00 3.06
758 1328 1.796017 TTGACCCGGCTATGGATGTA 58.204 50.000 0.00 0.00 0.00 2.29
759 1329 1.338107 TGACCCGGCTATGGATGTAG 58.662 55.000 0.00 0.00 0.00 2.74
760 1330 1.133294 TGACCCGGCTATGGATGTAGA 60.133 52.381 0.00 0.00 0.00 2.59
761 1331 2.180276 GACCCGGCTATGGATGTAGAT 58.820 52.381 0.00 0.00 0.00 1.98
762 1332 3.245479 TGACCCGGCTATGGATGTAGATA 60.245 47.826 0.00 0.00 0.00 1.98
763 1333 3.366396 ACCCGGCTATGGATGTAGATAG 58.634 50.000 0.00 0.00 0.00 2.08
764 1334 3.245658 ACCCGGCTATGGATGTAGATAGT 60.246 47.826 0.00 0.00 0.00 2.12
765 1335 3.131223 CCCGGCTATGGATGTAGATAGTG 59.869 52.174 0.00 0.00 0.00 2.74
766 1336 3.764434 CCGGCTATGGATGTAGATAGTGT 59.236 47.826 0.00 0.00 0.00 3.55
767 1337 4.220821 CCGGCTATGGATGTAGATAGTGTT 59.779 45.833 0.00 0.00 0.00 3.32
768 1338 5.403246 CGGCTATGGATGTAGATAGTGTTC 58.597 45.833 0.00 0.00 0.00 3.18
769 1339 5.048013 CGGCTATGGATGTAGATAGTGTTCA 60.048 44.000 0.00 0.00 0.00 3.18
770 1340 6.159988 GGCTATGGATGTAGATAGTGTTCAC 58.840 44.000 0.00 0.00 0.00 3.18
771 1341 6.159988 GCTATGGATGTAGATAGTGTTCACC 58.840 44.000 0.00 0.00 0.00 4.02
772 1342 6.015010 GCTATGGATGTAGATAGTGTTCACCT 60.015 42.308 0.00 0.00 0.00 4.00
773 1343 5.854010 TGGATGTAGATAGTGTTCACCTC 57.146 43.478 0.00 0.00 0.00 3.85
774 1344 5.519808 TGGATGTAGATAGTGTTCACCTCT 58.480 41.667 9.46 9.46 0.00 3.69
775 1345 5.958380 TGGATGTAGATAGTGTTCACCTCTT 59.042 40.000 9.69 0.00 0.00 2.85
776 1346 6.440647 TGGATGTAGATAGTGTTCACCTCTTT 59.559 38.462 9.69 0.06 0.00 2.52
777 1347 6.981559 GGATGTAGATAGTGTTCACCTCTTTC 59.018 42.308 9.69 6.49 0.00 2.62
778 1348 6.282199 TGTAGATAGTGTTCACCTCTTTCC 57.718 41.667 9.69 2.80 0.00 3.13
779 1349 4.828072 AGATAGTGTTCACCTCTTTCCC 57.172 45.455 0.00 0.00 0.00 3.97
780 1350 3.519913 AGATAGTGTTCACCTCTTTCCCC 59.480 47.826 0.00 0.00 0.00 4.81
781 1351 1.518367 AGTGTTCACCTCTTTCCCCA 58.482 50.000 0.00 0.00 0.00 4.96
782 1352 1.850345 AGTGTTCACCTCTTTCCCCAA 59.150 47.619 0.00 0.00 0.00 4.12
783 1353 2.158608 AGTGTTCACCTCTTTCCCCAAG 60.159 50.000 0.00 0.00 0.00 3.61
784 1354 1.144913 TGTTCACCTCTTTCCCCAAGG 59.855 52.381 0.00 0.00 36.21 3.61
785 1355 1.423921 GTTCACCTCTTTCCCCAAGGA 59.576 52.381 0.00 0.00 41.88 3.36
786 1356 2.041755 GTTCACCTCTTTCCCCAAGGAT 59.958 50.000 0.00 0.00 43.54 3.24
787 1357 1.635487 TCACCTCTTTCCCCAAGGATG 59.365 52.381 0.00 0.00 43.54 3.51
788 1358 1.635487 CACCTCTTTCCCCAAGGATGA 59.365 52.381 0.00 0.00 43.54 2.92
789 1359 1.636003 ACCTCTTTCCCCAAGGATGAC 59.364 52.381 0.00 0.00 43.54 3.06
790 1360 1.064389 CCTCTTTCCCCAAGGATGACC 60.064 57.143 0.00 0.00 43.54 4.02
801 1371 2.471815 AGGATGACCTTGGGTATCGA 57.528 50.000 0.00 0.00 45.36 3.59
802 1372 2.759355 AGGATGACCTTGGGTATCGAA 58.241 47.619 0.00 0.00 45.36 3.71
803 1373 2.434702 AGGATGACCTTGGGTATCGAAC 59.565 50.000 0.00 0.00 45.36 3.95
804 1374 4.765420 AGGATGACCTTGGGTATCGAACC 61.765 52.174 7.90 7.90 45.36 3.62
812 1382 2.496942 GGTATCGAACCCACGAGGA 58.503 57.895 0.00 0.00 45.22 3.71
813 1383 0.819582 GGTATCGAACCCACGAGGAA 59.180 55.000 0.00 0.00 45.22 3.36
814 1384 1.411612 GGTATCGAACCCACGAGGAAT 59.588 52.381 0.00 0.00 45.22 3.01
815 1385 2.159000 GGTATCGAACCCACGAGGAATT 60.159 50.000 0.00 0.00 45.22 2.17
816 1386 2.311124 ATCGAACCCACGAGGAATTC 57.689 50.000 0.00 3.23 45.22 2.17
817 1387 1.263356 TCGAACCCACGAGGAATTCT 58.737 50.000 5.23 0.00 39.89 2.40
818 1388 1.067142 TCGAACCCACGAGGAATTCTG 60.067 52.381 5.23 0.00 39.89 3.02
819 1389 1.087501 GAACCCACGAGGAATTCTGC 58.912 55.000 5.23 0.00 39.89 4.26
820 1390 0.693049 AACCCACGAGGAATTCTGCT 59.307 50.000 5.23 0.00 39.89 4.24
821 1391 1.568504 ACCCACGAGGAATTCTGCTA 58.431 50.000 5.23 0.00 39.89 3.49
822 1392 2.119495 ACCCACGAGGAATTCTGCTAT 58.881 47.619 5.23 0.00 39.89 2.97
823 1393 2.505819 ACCCACGAGGAATTCTGCTATT 59.494 45.455 5.23 0.00 39.89 1.73
824 1394 3.709653 ACCCACGAGGAATTCTGCTATTA 59.290 43.478 5.23 0.00 39.89 0.98
825 1395 4.202264 ACCCACGAGGAATTCTGCTATTAG 60.202 45.833 5.23 0.00 39.89 1.73
826 1396 4.310769 CCACGAGGAATTCTGCTATTAGG 58.689 47.826 5.23 0.00 36.89 2.69
827 1397 3.743396 CACGAGGAATTCTGCTATTAGGC 59.257 47.826 5.23 0.00 0.00 3.93
828 1398 3.388024 ACGAGGAATTCTGCTATTAGGCA 59.612 43.478 5.23 0.00 40.15 4.75
829 1399 4.141711 ACGAGGAATTCTGCTATTAGGCAA 60.142 41.667 5.23 0.00 41.94 4.52
830 1400 4.450419 CGAGGAATTCTGCTATTAGGCAAG 59.550 45.833 5.23 0.00 41.94 4.01
831 1401 4.723309 AGGAATTCTGCTATTAGGCAAGG 58.277 43.478 5.23 0.00 41.94 3.61
832 1402 4.413520 AGGAATTCTGCTATTAGGCAAGGA 59.586 41.667 5.23 0.00 41.94 3.36
833 1403 5.074239 AGGAATTCTGCTATTAGGCAAGGAT 59.926 40.000 5.23 0.00 41.94 3.24
834 1404 5.772169 GGAATTCTGCTATTAGGCAAGGATT 59.228 40.000 5.23 0.00 41.94 3.01
835 1405 6.072230 GGAATTCTGCTATTAGGCAAGGATTC 60.072 42.308 5.23 0.00 41.94 2.52
836 1406 5.372343 TTCTGCTATTAGGCAAGGATTCA 57.628 39.130 0.00 0.00 41.94 2.57
837 1407 5.372343 TCTGCTATTAGGCAAGGATTCAA 57.628 39.130 0.00 0.00 41.94 2.69
838 1408 5.371526 TCTGCTATTAGGCAAGGATTCAAG 58.628 41.667 0.00 0.00 41.94 3.02
839 1409 3.885297 TGCTATTAGGCAAGGATTCAAGC 59.115 43.478 0.00 0.00 39.43 4.01
840 1410 3.885297 GCTATTAGGCAAGGATTCAAGCA 59.115 43.478 0.00 0.00 0.00 3.91
841 1411 4.339247 GCTATTAGGCAAGGATTCAAGCAA 59.661 41.667 0.00 0.00 0.00 3.91
842 1412 4.996788 ATTAGGCAAGGATTCAAGCAAG 57.003 40.909 0.00 0.00 0.00 4.01
843 1413 0.893447 AGGCAAGGATTCAAGCAAGC 59.107 50.000 0.00 0.00 0.00 4.01
844 1414 0.893447 GGCAAGGATTCAAGCAAGCT 59.107 50.000 0.00 0.00 0.00 3.74
845 1415 2.094675 GGCAAGGATTCAAGCAAGCTA 58.905 47.619 0.00 0.00 0.00 3.32
846 1416 2.692041 GGCAAGGATTCAAGCAAGCTAT 59.308 45.455 0.00 0.00 0.00 2.97
847 1417 3.243334 GGCAAGGATTCAAGCAAGCTATC 60.243 47.826 0.00 0.00 0.00 2.08
848 1418 3.379372 GCAAGGATTCAAGCAAGCTATCA 59.621 43.478 0.00 0.00 0.00 2.15
849 1419 4.037684 GCAAGGATTCAAGCAAGCTATCAT 59.962 41.667 0.00 0.00 0.00 2.45
850 1420 5.451520 GCAAGGATTCAAGCAAGCTATCATT 60.452 40.000 0.00 0.00 0.00 2.57
851 1421 6.207213 CAAGGATTCAAGCAAGCTATCATTC 58.793 40.000 0.00 0.00 0.00 2.67
852 1422 5.692928 AGGATTCAAGCAAGCTATCATTCT 58.307 37.500 0.00 0.00 0.00 2.40
853 1423 6.127793 AGGATTCAAGCAAGCTATCATTCTT 58.872 36.000 0.00 0.00 0.00 2.52
854 1424 6.039493 AGGATTCAAGCAAGCTATCATTCTTG 59.961 38.462 0.00 0.00 41.79 3.02
855 1425 6.039047 GGATTCAAGCAAGCTATCATTCTTGA 59.961 38.462 6.20 0.00 41.50 3.02
856 1426 6.822667 TTCAAGCAAGCTATCATTCTTGAA 57.177 33.333 6.80 6.80 43.77 2.69
857 1427 6.822667 TCAAGCAAGCTATCATTCTTGAAA 57.177 33.333 6.20 0.00 41.50 2.69
858 1428 6.849502 TCAAGCAAGCTATCATTCTTGAAAG 58.150 36.000 6.20 0.00 41.50 2.62
859 1429 6.656270 TCAAGCAAGCTATCATTCTTGAAAGA 59.344 34.615 6.20 0.00 41.50 2.52
877 1447 9.670719 CTTGAAAGAAATTTCAGTTCTTAGACC 57.329 33.333 23.92 7.64 43.00 3.85
878 1448 7.861630 TGAAAGAAATTTCAGTTCTTAGACCG 58.138 34.615 23.92 0.00 43.00 4.79
879 1449 7.713507 TGAAAGAAATTTCAGTTCTTAGACCGA 59.286 33.333 23.92 8.47 43.00 4.69
880 1450 8.446599 AAAGAAATTTCAGTTCTTAGACCGAA 57.553 30.769 19.99 0.00 43.00 4.30
881 1451 8.446599 AAGAAATTTCAGTTCTTAGACCGAAA 57.553 30.769 19.99 3.45 42.22 3.46
882 1452 8.446599 AGAAATTTCAGTTCTTAGACCGAAAA 57.553 30.769 19.99 0.00 31.77 2.29
883 1453 8.899771 AGAAATTTCAGTTCTTAGACCGAAAAA 58.100 29.630 19.99 0.00 31.77 1.94
912 1482 9.778741 AGTAGTTGTGATTAAAACAGAGATCAA 57.221 29.630 0.00 0.00 31.01 2.57
1311 1881 0.329596 GTCTCACCAAGGGGAAGCAT 59.670 55.000 0.00 0.00 38.05 3.79
1468 2038 2.664185 CCGGAGCAGGCATGATCG 60.664 66.667 10.81 6.05 42.94 3.69
1520 2090 0.325296 TCCTGCAGGGAACTACGGAT 60.325 55.000 32.23 0.00 41.91 4.18
1591 2527 3.722908 TCTAGCACTGTAGTGGACTCT 57.277 47.619 13.41 4.96 45.72 3.24
1649 2597 4.809673 CACTACATGCGATATTAGCTCCA 58.190 43.478 0.00 0.00 35.28 3.86
1725 2673 5.030147 TGCCAGGAGGTAGAGAAATAAAGA 58.970 41.667 0.00 0.00 37.19 2.52
1727 2675 5.994668 GCCAGGAGGTAGAGAAATAAAGATG 59.005 44.000 0.00 0.00 37.19 2.90
1746 2694 6.662865 AGATGGTTCATGTATGTAGAGAGG 57.337 41.667 0.00 0.00 0.00 3.69
1752 2700 8.004801 TGGTTCATGTATGTAGAGAGGAGAATA 58.995 37.037 0.00 0.00 0.00 1.75
1754 2702 8.519526 GTTCATGTATGTAGAGAGGAGAATAGG 58.480 40.741 0.00 0.00 0.00 2.57
1800 2748 4.109766 CGGTAGAGTTCATAAACGCATGA 58.890 43.478 0.00 0.00 40.48 3.07
1926 2877 9.881649 GAGATCAAATACATGAAGATAGGCATA 57.118 33.333 0.00 0.00 32.06 3.14
1933 2884 4.042560 ACATGAAGATAGGCATAGGCATGT 59.957 41.667 0.15 0.00 43.71 3.21
1973 2924 8.894768 ACATTATAGTTGCACTTAGGATCTTC 57.105 34.615 0.00 0.00 0.00 2.87
1999 2950 8.236585 TCTTAATTTCCAATATGGTGATGTGG 57.763 34.615 0.00 0.00 39.03 4.17
2015 2966 7.047891 GGTGATGTGGTCTCAACAATTAGATA 58.952 38.462 0.00 0.00 30.48 1.98
2021 2972 5.669904 TGGTCTCAACAATTAGATATGGGGA 59.330 40.000 0.00 0.00 0.00 4.81
2046 2997 4.944317 TGCGTCCAAATAATATCACAACCA 59.056 37.500 0.00 0.00 0.00 3.67
2058 3009 9.693739 ATAATATCACAACCAATCAACAACCTA 57.306 29.630 0.00 0.00 0.00 3.08
2109 3060 0.531657 TACCGTCACATGGGGTTACG 59.468 55.000 0.00 0.00 44.58 3.18
2132 3083 7.270047 ACGTCGATTATTAAGGATTTCTCCAA 58.730 34.615 0.00 0.00 44.79 3.53
2144 3095 4.262592 GGATTTCTCCAAGCCAACACAATT 60.263 41.667 0.00 0.00 41.10 2.32
2255 3207 2.561478 ACGTGTCCCTGCACTTTATT 57.439 45.000 0.00 0.00 37.24 1.40
2302 3255 3.924576 AAAAAGTGCTCCCTGTGGT 57.075 47.368 0.00 0.00 0.00 4.16
2339 3292 1.144057 GCATGACGAAGGTCCGGAT 59.856 57.895 7.81 0.00 42.73 4.18
2340 3293 0.387929 GCATGACGAAGGTCCGGATA 59.612 55.000 7.81 0.00 42.73 2.59
2343 3296 1.039233 TGACGAAGGTCCGGATACCC 61.039 60.000 7.81 3.98 42.73 3.69
2368 3321 6.206048 CGTAAACCTCTCCTACATTTGGTTTT 59.794 38.462 12.20 0.00 42.79 2.43
2394 3347 6.708949 GGTTTGTGTGATTTTAGACTCCAGTA 59.291 38.462 0.00 0.00 0.00 2.74
2436 3389 5.524284 TGACCCACGTTGACAAAATATTTG 58.476 37.500 0.39 1.47 0.00 2.32
2441 3394 5.508153 CCACGTTGACAAAATATTTGGACCA 60.508 40.000 9.65 4.32 0.00 4.02
2517 3470 2.938838 AGGGTGAATCGTTTTGTTGGA 58.061 42.857 0.00 0.00 0.00 3.53
2554 3507 2.795329 CCAGCTAGGGTTGACATTTGT 58.205 47.619 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 6.401629 GGAGAAACCATCATGGGAAGACCA 62.402 50.000 9.04 0.00 46.11 4.02
354 921 1.199789 TGACGCATTGAAGTTGCATCC 59.800 47.619 0.00 0.00 40.14 3.51
435 1003 3.555795 GGCTCCGCATCTGAAGATATCAA 60.556 47.826 5.32 0.00 37.67 2.57
439 1007 1.413118 TGGCTCCGCATCTGAAGATA 58.587 50.000 0.00 0.00 32.63 1.98
449 1017 1.819208 CCAATTCGATGGCTCCGCA 60.819 57.895 0.00 0.00 32.78 5.69
516 1084 2.872245 TCGCTTTACCTGATATTGCTGC 59.128 45.455 0.00 0.00 0.00 5.25
545 1113 4.576463 ACTCCCGATGAGAAATTTATGTGC 59.424 41.667 8.65 0.00 44.42 4.57
563 1131 3.487372 ACTTAGGAACTTTGCAACTCCC 58.513 45.455 14.83 7.70 41.75 4.30
577 1145 3.135994 GTCACGGCAAAGAAACTTAGGA 58.864 45.455 0.00 0.00 0.00 2.94
594 1162 7.758613 TTTTCTTAAACCCGAAATTTGTCAC 57.241 32.000 0.00 0.00 0.00 3.67
660 1228 7.012421 GCCAGGTGACTAAAGGTATTATTTCAG 59.988 40.741 0.00 0.00 40.21 3.02
661 1229 6.826741 GCCAGGTGACTAAAGGTATTATTTCA 59.173 38.462 0.00 0.00 40.21 2.69
662 1230 7.054751 AGCCAGGTGACTAAAGGTATTATTTC 58.945 38.462 0.00 0.00 40.21 2.17
663 1231 6.970191 AGCCAGGTGACTAAAGGTATTATTT 58.030 36.000 0.00 0.00 40.21 1.40
666 1234 5.601313 CCTAGCCAGGTGACTAAAGGTATTA 59.399 44.000 0.00 0.00 40.21 0.98
668 1236 3.967987 CCTAGCCAGGTGACTAAAGGTAT 59.032 47.826 0.00 0.00 40.21 2.73
678 1248 4.375406 GCTACCCTAGCCAGGTGA 57.625 61.111 0.00 0.00 45.95 4.02
708 1278 0.777631 CATTTTCTGCGTTGTTGCCG 59.222 50.000 0.00 0.00 0.00 5.69
709 1279 1.139163 CCATTTTCTGCGTTGTTGCC 58.861 50.000 0.00 0.00 0.00 4.52
710 1280 1.851658 ACCATTTTCTGCGTTGTTGC 58.148 45.000 0.00 0.00 0.00 4.17
711 1281 3.443037 TCAACCATTTTCTGCGTTGTTG 58.557 40.909 0.00 0.00 37.34 3.33
712 1282 3.791973 TCAACCATTTTCTGCGTTGTT 57.208 38.095 0.00 0.00 37.34 2.83
713 1283 4.320608 AATCAACCATTTTCTGCGTTGT 57.679 36.364 0.00 0.00 37.34 3.32
714 1284 5.745653 GTAATCAACCATTTTCTGCGTTG 57.254 39.130 0.00 0.00 37.37 4.10
728 1298 1.471287 GCCGGGTCAAAGGTAATCAAC 59.529 52.381 2.18 0.00 0.00 3.18
729 1299 1.353022 AGCCGGGTCAAAGGTAATCAA 59.647 47.619 0.00 0.00 0.00 2.57
730 1300 0.988832 AGCCGGGTCAAAGGTAATCA 59.011 50.000 0.00 0.00 0.00 2.57
731 1301 2.994186 TAGCCGGGTCAAAGGTAATC 57.006 50.000 10.79 0.00 0.00 1.75
732 1302 2.158667 CCATAGCCGGGTCAAAGGTAAT 60.159 50.000 10.79 0.00 0.00 1.89
733 1303 1.210967 CCATAGCCGGGTCAAAGGTAA 59.789 52.381 10.79 0.00 0.00 2.85
734 1304 0.834612 CCATAGCCGGGTCAAAGGTA 59.165 55.000 10.79 0.00 0.00 3.08
735 1305 0.912487 TCCATAGCCGGGTCAAAGGT 60.912 55.000 10.79 0.00 0.00 3.50
736 1306 0.474184 ATCCATAGCCGGGTCAAAGG 59.526 55.000 10.79 8.41 0.00 3.11
737 1307 1.134098 ACATCCATAGCCGGGTCAAAG 60.134 52.381 10.79 0.00 0.00 2.77
738 1308 0.916086 ACATCCATAGCCGGGTCAAA 59.084 50.000 10.79 0.00 0.00 2.69
739 1309 1.691976 CTACATCCATAGCCGGGTCAA 59.308 52.381 10.79 0.00 0.00 3.18
740 1310 1.133294 TCTACATCCATAGCCGGGTCA 60.133 52.381 10.79 0.00 0.00 4.02
741 1311 1.629043 TCTACATCCATAGCCGGGTC 58.371 55.000 10.79 0.00 0.00 4.46
742 1312 2.327325 ATCTACATCCATAGCCGGGT 57.673 50.000 12.58 12.58 0.00 5.28
743 1313 3.131223 CACTATCTACATCCATAGCCGGG 59.869 52.174 2.18 0.00 0.00 5.73
744 1314 3.764434 ACACTATCTACATCCATAGCCGG 59.236 47.826 0.00 0.00 0.00 6.13
745 1315 5.048013 TGAACACTATCTACATCCATAGCCG 60.048 44.000 0.00 0.00 0.00 5.52
746 1316 6.159988 GTGAACACTATCTACATCCATAGCC 58.840 44.000 0.00 0.00 0.00 3.93
747 1317 6.015010 AGGTGAACACTATCTACATCCATAGC 60.015 42.308 4.96 0.00 0.00 2.97
748 1318 7.450014 AGAGGTGAACACTATCTACATCCATAG 59.550 40.741 4.96 0.00 0.00 2.23
749 1319 7.298374 AGAGGTGAACACTATCTACATCCATA 58.702 38.462 4.96 0.00 0.00 2.74
750 1320 6.139671 AGAGGTGAACACTATCTACATCCAT 58.860 40.000 4.96 0.00 0.00 3.41
751 1321 5.519808 AGAGGTGAACACTATCTACATCCA 58.480 41.667 4.96 0.00 0.00 3.41
752 1322 6.472686 AAGAGGTGAACACTATCTACATCC 57.527 41.667 4.96 0.00 30.85 3.51
753 1323 6.981559 GGAAAGAGGTGAACACTATCTACATC 59.018 42.308 4.96 7.99 30.85 3.06
754 1324 6.127026 GGGAAAGAGGTGAACACTATCTACAT 60.127 42.308 4.96 1.10 30.85 2.29
755 1325 5.187186 GGGAAAGAGGTGAACACTATCTACA 59.813 44.000 4.96 0.00 30.85 2.74
756 1326 5.395435 GGGGAAAGAGGTGAACACTATCTAC 60.395 48.000 4.96 6.94 30.85 2.59
757 1327 4.715297 GGGGAAAGAGGTGAACACTATCTA 59.285 45.833 4.96 0.00 30.85 1.98
758 1328 3.519913 GGGGAAAGAGGTGAACACTATCT 59.480 47.826 4.96 6.24 0.00 1.98
759 1329 3.263425 TGGGGAAAGAGGTGAACACTATC 59.737 47.826 4.96 4.26 0.00 2.08
760 1330 3.256704 TGGGGAAAGAGGTGAACACTAT 58.743 45.455 4.96 0.00 0.00 2.12
761 1331 2.696775 TGGGGAAAGAGGTGAACACTA 58.303 47.619 4.96 0.00 0.00 2.74
762 1332 1.518367 TGGGGAAAGAGGTGAACACT 58.482 50.000 4.96 0.00 0.00 3.55
763 1333 2.230660 CTTGGGGAAAGAGGTGAACAC 58.769 52.381 0.00 0.00 38.24 3.32
764 1334 1.144913 CCTTGGGGAAAGAGGTGAACA 59.855 52.381 0.00 0.00 38.24 3.18
765 1335 1.423921 TCCTTGGGGAAAGAGGTGAAC 59.576 52.381 0.00 0.00 38.93 3.18
766 1336 1.827792 TCCTTGGGGAAAGAGGTGAA 58.172 50.000 0.00 0.00 38.93 3.18
767 1337 1.635487 CATCCTTGGGGAAAGAGGTGA 59.365 52.381 0.00 0.00 45.78 4.02
768 1338 1.635487 TCATCCTTGGGGAAAGAGGTG 59.365 52.381 0.00 0.00 45.78 4.00
769 1339 1.636003 GTCATCCTTGGGGAAAGAGGT 59.364 52.381 0.00 0.00 45.78 3.85
770 1340 1.064389 GGTCATCCTTGGGGAAAGAGG 60.064 57.143 0.00 0.00 45.78 3.69
771 1341 1.918957 AGGTCATCCTTGGGGAAAGAG 59.081 52.381 0.00 0.00 45.78 2.85
772 1342 2.059756 AGGTCATCCTTGGGGAAAGA 57.940 50.000 0.00 0.00 45.78 2.52
781 1351 6.206135 GGTTCGATACCCAAGGTCATCCTT 62.206 50.000 5.71 0.00 45.02 3.36
782 1352 4.765420 GGTTCGATACCCAAGGTCATCCT 61.765 52.174 5.71 0.00 42.83 3.24
783 1353 2.484947 GGTTCGATACCCAAGGTCATCC 60.485 54.545 5.71 0.00 41.43 3.51
784 1354 2.835027 GGTTCGATACCCAAGGTCATC 58.165 52.381 5.71 0.00 41.43 2.92
794 1364 0.819582 TTCCTCGTGGGTTCGATACC 59.180 55.000 3.23 7.90 46.99 2.73
795 1365 2.884894 ATTCCTCGTGGGTTCGATAC 57.115 50.000 3.23 0.00 39.12 2.24
796 1366 3.028850 AGAATTCCTCGTGGGTTCGATA 58.971 45.455 0.65 0.00 39.12 2.92
797 1367 1.831736 AGAATTCCTCGTGGGTTCGAT 59.168 47.619 0.65 0.00 39.12 3.59
798 1368 1.067142 CAGAATTCCTCGTGGGTTCGA 60.067 52.381 0.65 0.00 35.23 3.71
799 1369 1.359848 CAGAATTCCTCGTGGGTTCG 58.640 55.000 0.65 2.94 35.23 3.95
800 1370 1.087501 GCAGAATTCCTCGTGGGTTC 58.912 55.000 0.65 8.71 36.25 3.62
801 1371 0.693049 AGCAGAATTCCTCGTGGGTT 59.307 50.000 0.65 0.00 36.25 4.11
802 1372 1.568504 TAGCAGAATTCCTCGTGGGT 58.431 50.000 0.65 0.00 36.25 4.51
803 1373 2.918712 ATAGCAGAATTCCTCGTGGG 57.081 50.000 0.65 0.00 0.00 4.61
804 1374 4.310769 CCTAATAGCAGAATTCCTCGTGG 58.689 47.826 0.65 0.00 0.00 4.94
805 1375 3.743396 GCCTAATAGCAGAATTCCTCGTG 59.257 47.826 0.65 0.00 0.00 4.35
806 1376 3.388024 TGCCTAATAGCAGAATTCCTCGT 59.612 43.478 0.65 0.00 38.00 4.18
807 1377 3.995199 TGCCTAATAGCAGAATTCCTCG 58.005 45.455 0.65 0.00 38.00 4.63
808 1378 4.759183 CCTTGCCTAATAGCAGAATTCCTC 59.241 45.833 0.65 0.00 45.13 3.71
809 1379 4.413520 TCCTTGCCTAATAGCAGAATTCCT 59.586 41.667 0.65 0.00 45.13 3.36
810 1380 4.718961 TCCTTGCCTAATAGCAGAATTCC 58.281 43.478 0.65 0.00 45.13 3.01
811 1381 6.488006 TGAATCCTTGCCTAATAGCAGAATTC 59.512 38.462 0.00 0.00 45.13 2.17
812 1382 6.367983 TGAATCCTTGCCTAATAGCAGAATT 58.632 36.000 0.00 0.00 45.13 2.17
813 1383 5.945310 TGAATCCTTGCCTAATAGCAGAAT 58.055 37.500 0.00 0.00 45.13 2.40
814 1384 5.372343 TGAATCCTTGCCTAATAGCAGAA 57.628 39.130 0.00 0.00 45.13 3.02
815 1385 5.371526 CTTGAATCCTTGCCTAATAGCAGA 58.628 41.667 0.00 0.00 45.13 4.26
816 1386 4.023365 GCTTGAATCCTTGCCTAATAGCAG 60.023 45.833 0.00 0.00 45.13 4.24
817 1387 3.885297 GCTTGAATCCTTGCCTAATAGCA 59.115 43.478 0.00 0.00 42.17 3.49
818 1388 3.885297 TGCTTGAATCCTTGCCTAATAGC 59.115 43.478 0.00 0.00 0.00 2.97
819 1389 5.506982 GCTTGCTTGAATCCTTGCCTAATAG 60.507 44.000 0.00 0.00 0.00 1.73
820 1390 4.339247 GCTTGCTTGAATCCTTGCCTAATA 59.661 41.667 0.00 0.00 0.00 0.98
821 1391 3.131755 GCTTGCTTGAATCCTTGCCTAAT 59.868 43.478 0.00 0.00 0.00 1.73
822 1392 2.493278 GCTTGCTTGAATCCTTGCCTAA 59.507 45.455 0.00 0.00 0.00 2.69
823 1393 2.094675 GCTTGCTTGAATCCTTGCCTA 58.905 47.619 0.00 0.00 0.00 3.93
824 1394 0.893447 GCTTGCTTGAATCCTTGCCT 59.107 50.000 0.00 0.00 0.00 4.75
825 1395 0.893447 AGCTTGCTTGAATCCTTGCC 59.107 50.000 0.00 0.00 0.00 4.52
826 1396 3.379372 TGATAGCTTGCTTGAATCCTTGC 59.621 43.478 0.00 0.00 0.00 4.01
827 1397 5.769484 ATGATAGCTTGCTTGAATCCTTG 57.231 39.130 0.00 0.00 0.00 3.61
828 1398 6.127793 AGAATGATAGCTTGCTTGAATCCTT 58.872 36.000 0.00 0.00 0.00 3.36
829 1399 5.692928 AGAATGATAGCTTGCTTGAATCCT 58.307 37.500 0.00 0.00 0.00 3.24
830 1400 6.039047 TCAAGAATGATAGCTTGCTTGAATCC 59.961 38.462 13.42 0.00 40.89 3.01
831 1401 7.024340 TCAAGAATGATAGCTTGCTTGAATC 57.976 36.000 13.42 0.00 40.89 2.52
832 1402 7.400599 TTCAAGAATGATAGCTTGCTTGAAT 57.599 32.000 20.50 0.00 43.39 2.57
833 1403 6.822667 TTCAAGAATGATAGCTTGCTTGAA 57.177 33.333 20.50 20.50 44.97 2.69
834 1404 6.656270 TCTTTCAAGAATGATAGCTTGCTTGA 59.344 34.615 12.11 12.11 40.89 3.02
835 1405 6.849502 TCTTTCAAGAATGATAGCTTGCTTG 58.150 36.000 8.04 8.04 40.89 4.01
836 1406 7.458409 TTCTTTCAAGAATGATAGCTTGCTT 57.542 32.000 0.00 0.00 39.95 3.91
837 1407 7.458409 TTTCTTTCAAGAATGATAGCTTGCT 57.542 32.000 2.83 0.00 43.92 3.91
838 1408 8.699283 AATTTCTTTCAAGAATGATAGCTTGC 57.301 30.769 2.83 0.00 43.92 4.01
853 1423 7.713507 TCGGTCTAAGAACTGAAATTTCTTTCA 59.286 33.333 23.64 7.26 46.53 2.69
854 1424 8.084590 TCGGTCTAAGAACTGAAATTTCTTTC 57.915 34.615 18.64 18.41 39.77 2.62
855 1425 8.446599 TTCGGTCTAAGAACTGAAATTTCTTT 57.553 30.769 18.64 11.66 39.77 2.52
856 1426 8.446599 TTTCGGTCTAAGAACTGAAATTTCTT 57.553 30.769 18.64 6.09 45.20 2.52
886 1456 9.778741 TTGATCTCTGTTTTAATCACAACTACT 57.221 29.630 0.00 0.00 0.00 2.57
892 1462 9.513906 TGGTATTTGATCTCTGTTTTAATCACA 57.486 29.630 0.00 0.00 0.00 3.58
893 1463 9.774742 GTGGTATTTGATCTCTGTTTTAATCAC 57.225 33.333 0.00 0.00 0.00 3.06
894 1464 9.739276 AGTGGTATTTGATCTCTGTTTTAATCA 57.261 29.630 0.00 0.00 0.00 2.57
897 1467 8.792633 CCAAGTGGTATTTGATCTCTGTTTTAA 58.207 33.333 0.00 0.00 0.00 1.52
898 1468 7.393234 CCCAAGTGGTATTTGATCTCTGTTTTA 59.607 37.037 0.00 0.00 0.00 1.52
899 1469 6.209391 CCCAAGTGGTATTTGATCTCTGTTTT 59.791 38.462 0.00 0.00 0.00 2.43
900 1470 5.711976 CCCAAGTGGTATTTGATCTCTGTTT 59.288 40.000 0.00 0.00 0.00 2.83
901 1471 5.256474 CCCAAGTGGTATTTGATCTCTGTT 58.744 41.667 0.00 0.00 0.00 3.16
902 1472 4.848357 CCCAAGTGGTATTTGATCTCTGT 58.152 43.478 0.00 0.00 0.00 3.41
1096 1666 3.551496 CTTGGGCAAGCCACTCCGA 62.551 63.158 13.87 0.00 37.98 4.55
1311 1881 2.355310 GGGGACAATCGTATCAACCACA 60.355 50.000 0.00 0.00 0.00 4.17
1468 2038 1.155424 TCACCGGTTTCGCTGTGAAC 61.155 55.000 2.97 0.00 35.66 3.18
1591 2527 3.190327 CGTTTCCATCACAATAGGCAACA 59.810 43.478 0.00 0.00 41.41 3.33
1649 2597 1.251527 AACGAGATCTGTCCGGCACT 61.252 55.000 0.00 0.00 0.00 4.40
1725 2673 6.377080 TCTCCTCTCTACATACATGAACCAT 58.623 40.000 0.00 0.00 0.00 3.55
1727 2675 6.716934 TTCTCCTCTCTACATACATGAACC 57.283 41.667 0.00 0.00 0.00 3.62
1746 2694 6.459923 CAAGATAGTGGCTTACCCTATTCTC 58.540 44.000 0.00 0.00 32.62 2.87
1752 2700 1.139058 CGCAAGATAGTGGCTTACCCT 59.861 52.381 0.00 0.00 43.02 4.34
1754 2702 2.596904 TCGCAAGATAGTGGCTTACC 57.403 50.000 0.00 0.00 45.01 2.85
1800 2748 1.077501 CCGATCCCAGCCACACAAT 60.078 57.895 0.00 0.00 0.00 2.71
1824 2772 3.884037 ACACAAATCTGGGACCTTCTT 57.116 42.857 0.00 0.00 0.00 2.52
1827 2775 3.814316 GCCTTACACAAATCTGGGACCTT 60.814 47.826 0.00 0.00 0.00 3.50
1911 2861 4.395231 CACATGCCTATGCCTATCTTCATG 59.605 45.833 0.00 0.00 37.85 3.07
1917 2867 2.304180 AGTCCACATGCCTATGCCTATC 59.696 50.000 0.00 0.00 37.85 2.08
1926 2877 4.634012 TGTAAGTAAAGTCCACATGCCT 57.366 40.909 0.00 0.00 0.00 4.75
1973 2924 8.355169 CCACATCACCATATTGGAAATTAAGAG 58.645 37.037 0.00 0.00 40.96 2.85
1987 2938 4.632327 TTGTTGAGACCACATCACCATA 57.368 40.909 0.00 0.00 0.00 2.74
1999 2950 7.308830 GCATTCCCCATATCTAATTGTTGAGAC 60.309 40.741 0.00 0.00 0.00 3.36
2015 2966 2.746279 TATTTGGACGCATTCCCCAT 57.254 45.000 0.00 0.00 45.17 4.00
2021 2972 6.096141 TGGTTGTGATATTATTTGGACGCATT 59.904 34.615 0.00 0.00 0.00 3.56
2046 2997 4.894784 ACTCACGATGTAGGTTGTTGATT 58.105 39.130 0.00 0.00 0.00 2.57
2058 3009 4.801330 TTGGACAATAGACTCACGATGT 57.199 40.909 0.00 0.00 0.00 3.06
2109 3060 7.308049 GGCTTGGAGAAATCCTTAATAATCGAC 60.308 40.741 0.00 0.00 0.00 4.20
2144 3095 0.032952 GGTGTAGTCACTGAACGCCA 59.967 55.000 5.55 0.00 42.20 5.69
2151 3102 4.161189 AGGAATCATGAGGTGTAGTCACTG 59.839 45.833 0.09 0.00 43.41 3.66
2197 3148 4.881850 CGCCTATGAAAGTAAGGATTGGTT 59.118 41.667 0.00 0.00 31.64 3.67
2339 3292 3.737559 TGTAGGAGAGGTTTACGGGTA 57.262 47.619 0.00 0.00 0.00 3.69
2340 3293 2.610438 TGTAGGAGAGGTTTACGGGT 57.390 50.000 0.00 0.00 0.00 5.28
2343 3296 4.828829 ACCAAATGTAGGAGAGGTTTACG 58.171 43.478 0.00 0.00 0.00 3.18
2345 3298 6.492087 CCAAAACCAAATGTAGGAGAGGTTTA 59.508 38.462 7.70 0.00 45.59 2.01
2368 3321 5.441500 TGGAGTCTAAAATCACACAAACCA 58.558 37.500 0.00 0.00 0.00 3.67
2394 3347 6.043706 TGGGTCATTAAATTTGTCCAAACCAT 59.956 34.615 0.00 0.00 32.51 3.55
2412 3365 5.975693 AATATTTTGTCAACGTGGGTCAT 57.024 34.783 0.00 0.00 0.00 3.06
2441 3394 4.331717 CGCCTTTAAATGTGTAGACCGAAT 59.668 41.667 0.00 0.00 0.00 3.34
2451 3404 4.804108 TCACCAAATCGCCTTTAAATGTG 58.196 39.130 0.00 0.00 0.00 3.21
2554 3507 3.458872 CTGCAATCTAGGCGGTTCA 57.541 52.632 0.00 0.00 32.96 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.