Multiple sequence alignment - TraesCS3A01G183800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G183800 chr3A 100.000 4204 0 0 1 4204 213255379 213259582 0.000000e+00 7764.0
1 TraesCS3A01G183800 chr3A 93.898 508 19 7 1 503 128107777 128108277 0.000000e+00 756.0
2 TraesCS3A01G183800 chr3A 97.701 348 7 1 156 503 213250678 213251024 7.780000e-167 597.0
3 TraesCS3A01G183800 chr3A 84.715 543 62 14 3653 4183 727312315 727312848 1.340000e-144 523.0
4 TraesCS3A01G183800 chr3A 91.573 356 18 7 153 503 128103091 128103439 8.170000e-132 481.0
5 TraesCS3A01G183800 chr3A 91.525 59 3 2 3369 3426 416504767 416504824 3.480000e-11 80.5
6 TraesCS3A01G183800 chr3D 90.912 3499 191 64 744 4180 174455105 174458538 0.000000e+00 4582.0
7 TraesCS3A01G183800 chr3D 87.625 501 55 7 1529 2029 584112475 584111982 3.650000e-160 575.0
8 TraesCS3A01G183800 chr3D 93.220 59 3 1 3373 3430 309913829 309913887 7.490000e-13 86.1
9 TraesCS3A01G183800 chr3B 90.731 3377 207 56 730 4067 252956653 252959962 0.000000e+00 4405.0
10 TraesCS3A01G183800 chr3B 83.575 207 19 9 536 729 798974253 798974457 3.340000e-41 180.0
11 TraesCS3A01G183800 chr3B 93.220 59 3 1 3373 3430 411425832 411425774 7.490000e-13 86.1
12 TraesCS3A01G183800 chr5B 84.758 1076 121 26 987 2044 446010246 446009196 0.000000e+00 1038.0
13 TraesCS3A01G183800 chr5B 82.381 1067 129 21 995 2044 447207097 447206073 0.000000e+00 874.0
14 TraesCS3A01G183800 chr5B 83.171 719 99 14 2326 3043 447205420 447204723 4.580000e-179 638.0
15 TraesCS3A01G183800 chr5B 88.780 508 49 5 1522 2029 446411986 446412485 2.150000e-172 616.0
16 TraesCS3A01G183800 chr5B 86.564 521 70 0 2523 3043 446413464 446413984 3.650000e-160 575.0
17 TraesCS3A01G183800 chr5B 87.451 510 30 17 1 509 690484582 690484106 1.320000e-154 556.0
18 TraesCS3A01G183800 chr5B 86.047 473 49 9 995 1453 446411462 446411931 3.780000e-135 492.0
19 TraesCS3A01G183800 chr5B 93.060 317 20 2 154 469 690489209 690488894 2.960000e-126 462.0
20 TraesCS3A01G183800 chr5B 92.727 55 4 0 2169 2223 446009032 446008978 3.480000e-11 80.5
21 TraesCS3A01G183800 chr5B 92.727 55 4 0 2169 2223 447205574 447205520 3.480000e-11 80.5
22 TraesCS3A01G183800 chr5A 84.659 1069 125 30 995 2041 476072857 476073908 0.000000e+00 1029.0
23 TraesCS3A01G183800 chr5A 91.211 512 32 8 1 509 29773322 29772821 0.000000e+00 684.0
24 TraesCS3A01G183800 chr5A 90.625 352 20 8 154 503 29777970 29777630 4.950000e-124 455.0
25 TraesCS3A01G183800 chr5A 91.667 60 5 0 2169 2228 476074046 476074105 2.690000e-12 84.2
26 TraesCS3A01G183800 chr5D 83.471 726 103 14 2326 3043 374296780 374297496 0.000000e+00 660.0
27 TraesCS3A01G183800 chr5D 88.550 524 52 5 1522 2045 374295958 374296473 2.760000e-176 628.0
28 TraesCS3A01G183800 chr5D 86.704 534 67 2 3641 4170 480971155 480971688 1.300000e-164 590.0
29 TraesCS3A01G183800 chr5D 85.501 469 51 9 995 1449 374295430 374295895 1.370000e-129 473.0
30 TraesCS3A01G183800 chr5D 92.000 50 4 0 2169 2218 374296641 374296690 2.100000e-08 71.3
31 TraesCS3A01G183800 chr2A 91.364 440 36 2 1 439 30729005 30728567 6.010000e-168 601.0
32 TraesCS3A01G183800 chr2A 85.083 543 70 10 3649 4184 10633045 10632507 1.030000e-150 544.0
33 TraesCS3A01G183800 chr4D 87.380 523 61 3 3641 4158 502028468 502028990 2.800000e-166 595.0
34 TraesCS3A01G183800 chr4D 85.475 537 63 12 3653 4182 138762688 138762160 2.860000e-151 545.0
35 TraesCS3A01G183800 chr6D 86.188 543 72 2 3641 4180 10432856 10433398 6.060000e-163 584.0
36 TraesCS3A01G183800 chr4A 83.971 549 79 7 3641 4183 246716553 246717098 6.230000e-143 518.0
37 TraesCS3A01G183800 chr2B 86.081 467 57 6 1 462 43825624 43825161 2.920000e-136 496.0
38 TraesCS3A01G183800 chr2B 84.500 200 29 1 531 730 592799598 592799795 3.320000e-46 196.0
39 TraesCS3A01G183800 chrUn 83.433 501 80 2 1529 2029 86286137 86286634 2.960000e-126 462.0
40 TraesCS3A01G183800 chrUn 86.322 329 42 2 1118 1443 86285713 86286041 5.170000e-94 355.0
41 TraesCS3A01G183800 chrUn 83.333 210 24 6 532 733 33036078 33036284 2.580000e-42 183.0
42 TraesCS3A01G183800 chr7A 81.594 527 87 8 1529 2049 221741288 221740766 1.080000e-115 427.0
43 TraesCS3A01G183800 chr7A 93.103 58 3 1 3374 3430 61865630 61865573 2.690000e-12 84.2
44 TraesCS3A01G183800 chr7D 86.866 335 41 2 1118 1449 208656645 208656311 5.130000e-99 372.0
45 TraesCS3A01G183800 chr1A 87.019 208 13 8 535 730 52841396 52841601 5.470000e-54 222.0
46 TraesCS3A01G183800 chr1A 86.070 201 19 6 537 730 492022863 492023061 1.530000e-49 207.0
47 TraesCS3A01G183800 chr1A 90.323 62 4 2 3370 3430 264217484 264217544 3.480000e-11 80.5
48 TraesCS3A01G183800 chr6A 86.070 201 14 7 536 729 108254763 108254570 1.980000e-48 204.0
49 TraesCS3A01G183800 chr6A 86.154 195 15 8 538 730 433940869 433940685 2.560000e-47 200.0
50 TraesCS3A01G183800 chr1B 84.834 211 20 6 532 730 491731769 491731979 7.130000e-48 202.0
51 TraesCS3A01G183800 chr7B 82.828 198 28 3 535 726 583569423 583569620 5.590000e-39 172.0
52 TraesCS3A01G183800 chr1D 93.103 58 2 2 3379 3435 366680806 366680750 2.690000e-12 84.2
53 TraesCS3A01G183800 chr4B 91.525 59 4 1 3373 3430 621424798 621424740 3.480000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G183800 chr3A 213255379 213259582 4203 False 7764.000000 7764 100.000000 1 4204 1 chr3A.!!$F4 4203
1 TraesCS3A01G183800 chr3A 128107777 128108277 500 False 756.000000 756 93.898000 1 503 1 chr3A.!!$F2 502
2 TraesCS3A01G183800 chr3A 727312315 727312848 533 False 523.000000 523 84.715000 3653 4183 1 chr3A.!!$F6 530
3 TraesCS3A01G183800 chr3D 174455105 174458538 3433 False 4582.000000 4582 90.912000 744 4180 1 chr3D.!!$F1 3436
4 TraesCS3A01G183800 chr3B 252956653 252959962 3309 False 4405.000000 4405 90.731000 730 4067 1 chr3B.!!$F1 3337
5 TraesCS3A01G183800 chr5B 446411462 446413984 2522 False 561.000000 616 87.130333 995 3043 3 chr5B.!!$F1 2048
6 TraesCS3A01G183800 chr5B 446008978 446010246 1268 True 559.250000 1038 88.742500 987 2223 2 chr5B.!!$R3 1236
7 TraesCS3A01G183800 chr5B 447204723 447207097 2374 True 530.833333 874 86.093000 995 3043 3 chr5B.!!$R4 2048
8 TraesCS3A01G183800 chr5A 29772821 29773322 501 True 684.000000 684 91.211000 1 509 1 chr5A.!!$R1 508
9 TraesCS3A01G183800 chr5A 476072857 476074105 1248 False 556.600000 1029 88.163000 995 2228 2 chr5A.!!$F1 1233
10 TraesCS3A01G183800 chr5D 480971155 480971688 533 False 590.000000 590 86.704000 3641 4170 1 chr5D.!!$F1 529
11 TraesCS3A01G183800 chr5D 374295430 374297496 2066 False 458.075000 660 87.380500 995 3043 4 chr5D.!!$F2 2048
12 TraesCS3A01G183800 chr2A 10632507 10633045 538 True 544.000000 544 85.083000 3649 4184 1 chr2A.!!$R1 535
13 TraesCS3A01G183800 chr4D 502028468 502028990 522 False 595.000000 595 87.380000 3641 4158 1 chr4D.!!$F1 517
14 TraesCS3A01G183800 chr4D 138762160 138762688 528 True 545.000000 545 85.475000 3653 4182 1 chr4D.!!$R1 529
15 TraesCS3A01G183800 chr6D 10432856 10433398 542 False 584.000000 584 86.188000 3641 4180 1 chr6D.!!$F1 539
16 TraesCS3A01G183800 chr4A 246716553 246717098 545 False 518.000000 518 83.971000 3641 4183 1 chr4A.!!$F1 542
17 TraesCS3A01G183800 chrUn 86285713 86286634 921 False 408.500000 462 84.877500 1118 2029 2 chrUn.!!$F2 911
18 TraesCS3A01G183800 chr7A 221740766 221741288 522 True 427.000000 427 81.594000 1529 2049 1 chr7A.!!$R2 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 523 0.036010 GAACCTGCTCTTGCTAGGCA 60.036 55.0 9.94 9.94 39.46 4.75 F
540 541 0.036765 CACCAGGGAAAATCGGACGA 60.037 55.0 0.00 0.00 0.00 4.20 F
708 709 0.106708 GGAGCACCGATGGAAGCATA 59.893 55.0 7.52 0.00 31.94 3.14 F
724 725 0.548031 CATAAGGAGGGAGCAGGCAA 59.452 55.0 0.00 0.00 0.00 4.52 F
2356 3410 0.678950 TTGTGCTGTGGATGACGAGA 59.321 50.0 0.00 0.00 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2486 3540 0.179073 ATATCCAGTGAGCACGTGCC 60.179 55.000 35.51 26.08 43.38 5.01 R
2492 3546 3.305608 CGATACAGCATATCCAGTGAGCA 60.306 47.826 0.00 0.00 0.00 4.26 R
2540 3598 3.135348 TGGGGATTATGAAGAGCAGAGTG 59.865 47.826 0.00 0.00 0.00 3.51 R
2858 3916 2.993008 GGGACCATGAGCAGCAGA 59.007 61.111 0.00 0.00 0.00 4.26 R
4098 5208 0.179468 AAGCACACCCTAACACACGT 59.821 50.000 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 3.907474 TCAAATCCAGTAGTGGTTCAGGA 59.093 43.478 16.36 6.57 45.28 3.86
141 142 4.494091 AATCCAGTAGTGGTTCAGGATG 57.506 45.455 16.36 0.00 45.28 3.51
255 256 3.883180 GTGGTTTGTGCGTGCCGT 61.883 61.111 0.00 0.00 0.00 5.68
256 257 3.882013 TGGTTTGTGCGTGCCGTG 61.882 61.111 0.00 0.00 0.00 4.94
269 270 3.812019 CCGTGCGCGAGTAGGAGT 61.812 66.667 23.45 0.00 41.33 3.85
270 271 2.466982 CCGTGCGCGAGTAGGAGTA 61.467 63.158 23.45 0.00 41.33 2.59
271 272 1.011019 CGTGCGCGAGTAGGAGTAG 60.011 63.158 16.08 0.00 41.33 2.57
272 273 1.355916 GTGCGCGAGTAGGAGTAGG 59.644 63.158 12.10 0.00 0.00 3.18
273 274 1.094073 GTGCGCGAGTAGGAGTAGGA 61.094 60.000 12.10 0.00 0.00 2.94
274 275 0.814410 TGCGCGAGTAGGAGTAGGAG 60.814 60.000 12.10 0.00 0.00 3.69
275 276 1.508808 GCGCGAGTAGGAGTAGGAGG 61.509 65.000 12.10 0.00 0.00 4.30
276 277 0.179051 CGCGAGTAGGAGTAGGAGGT 60.179 60.000 0.00 0.00 0.00 3.85
277 278 1.310904 GCGAGTAGGAGTAGGAGGTG 58.689 60.000 0.00 0.00 0.00 4.00
278 279 1.134159 GCGAGTAGGAGTAGGAGGTGA 60.134 57.143 0.00 0.00 0.00 4.02
279 280 2.563702 CGAGTAGGAGTAGGAGGTGAC 58.436 57.143 0.00 0.00 0.00 3.67
280 281 2.745812 CGAGTAGGAGTAGGAGGTGACC 60.746 59.091 0.00 0.00 0.00 4.02
281 282 1.212441 AGTAGGAGTAGGAGGTGACCG 59.788 57.143 0.00 0.00 34.73 4.79
282 283 0.106819 TAGGAGTAGGAGGTGACCGC 60.107 60.000 0.00 0.00 34.73 5.68
283 284 2.772691 GGAGTAGGAGGTGACCGCG 61.773 68.421 0.00 0.00 34.73 6.46
284 285 2.754658 AGTAGGAGGTGACCGCGG 60.755 66.667 26.86 26.86 34.73 6.46
285 286 3.066814 GTAGGAGGTGACCGCGGT 61.067 66.667 34.89 34.89 34.73 5.68
286 287 3.066190 TAGGAGGTGACCGCGGTG 61.066 66.667 39.65 8.53 34.73 4.94
287 288 3.572447 TAGGAGGTGACCGCGGTGA 62.572 63.158 39.65 28.20 34.73 4.02
288 289 4.436998 GGAGGTGACCGCGGTGAG 62.437 72.222 39.65 7.13 0.00 3.51
299 300 4.379243 CGGTGAGCACGCCCTCTT 62.379 66.667 8.23 0.00 43.10 2.85
300 301 2.435059 GGTGAGCACGCCCTCTTC 60.435 66.667 1.76 0.00 40.47 2.87
301 302 2.811317 GTGAGCACGCCCTCTTCG 60.811 66.667 4.79 0.00 33.02 3.79
302 303 3.303135 TGAGCACGCCCTCTTCGT 61.303 61.111 4.79 0.00 41.28 3.85
307 308 2.049433 ACGCCCTCTTCGTGAACG 60.049 61.111 0.00 0.00 38.88 3.95
308 309 2.049433 CGCCCTCTTCGTGAACGT 60.049 61.111 2.37 0.00 40.80 3.99
309 310 2.372690 CGCCCTCTTCGTGAACGTG 61.373 63.158 2.37 0.00 40.80 4.49
310 311 2.027625 GCCCTCTTCGTGAACGTGG 61.028 63.158 2.37 2.17 40.80 4.94
311 312 1.374252 CCCTCTTCGTGAACGTGGG 60.374 63.158 2.37 7.07 40.80 4.61
312 313 1.663739 CCTCTTCGTGAACGTGGGA 59.336 57.895 2.37 0.00 40.80 4.37
313 314 0.246635 CCTCTTCGTGAACGTGGGAT 59.753 55.000 2.37 0.00 40.80 3.85
314 315 1.350193 CTCTTCGTGAACGTGGGATG 58.650 55.000 2.37 0.00 40.80 3.51
315 316 0.037697 TCTTCGTGAACGTGGGATGG 60.038 55.000 2.37 0.00 40.80 3.51
316 317 1.635663 CTTCGTGAACGTGGGATGGC 61.636 60.000 2.37 0.00 40.80 4.40
317 318 2.358125 CGTGAACGTGGGATGGCA 60.358 61.111 0.00 0.00 34.11 4.92
318 319 2.677003 CGTGAACGTGGGATGGCAC 61.677 63.158 0.00 0.00 34.11 5.01
323 324 3.487202 CGTGGGATGGCACGTTCG 61.487 66.667 0.00 0.00 39.64 3.95
324 325 2.047655 GTGGGATGGCACGTTCGA 60.048 61.111 0.00 0.00 0.00 3.71
325 326 1.669760 GTGGGATGGCACGTTCGAA 60.670 57.895 0.00 0.00 0.00 3.71
326 327 1.375396 TGGGATGGCACGTTCGAAG 60.375 57.895 0.00 0.00 0.00 3.79
327 328 2.106683 GGGATGGCACGTTCGAAGG 61.107 63.158 15.90 15.90 0.00 3.46
328 329 1.079405 GGATGGCACGTTCGAAGGA 60.079 57.895 23.56 2.18 0.00 3.36
329 330 0.672401 GGATGGCACGTTCGAAGGAA 60.672 55.000 23.56 7.20 0.00 3.36
336 337 4.785767 GTTCGAAGGAACGGGGTT 57.214 55.556 0.00 0.00 42.78 4.11
337 338 2.241171 GTTCGAAGGAACGGGGTTG 58.759 57.895 0.00 0.00 42.78 3.77
338 339 0.533531 GTTCGAAGGAACGGGGTTGT 60.534 55.000 0.00 0.00 42.78 3.32
339 340 0.533308 TTCGAAGGAACGGGGTTGTG 60.533 55.000 0.00 0.00 0.00 3.33
340 341 1.964373 CGAAGGAACGGGGTTGTGG 60.964 63.158 0.00 0.00 0.00 4.17
341 342 2.203437 AAGGAACGGGGTTGTGGC 60.203 61.111 0.00 0.00 0.00 5.01
342 343 4.636435 AGGAACGGGGTTGTGGCG 62.636 66.667 0.00 0.00 0.00 5.69
343 344 4.941309 GGAACGGGGTTGTGGCGT 62.941 66.667 0.00 0.00 0.00 5.68
344 345 3.656045 GAACGGGGTTGTGGCGTG 61.656 66.667 0.00 0.00 0.00 5.34
349 350 3.361977 GGGTTGTGGCGTGCGAAT 61.362 61.111 0.00 0.00 0.00 3.34
350 351 2.175811 GGTTGTGGCGTGCGAATC 59.824 61.111 0.00 0.00 0.00 2.52
351 352 2.202171 GTTGTGGCGTGCGAATCG 60.202 61.111 0.00 0.00 0.00 3.34
352 353 3.418913 TTGTGGCGTGCGAATCGG 61.419 61.111 4.35 0.00 0.00 4.18
353 354 4.673298 TGTGGCGTGCGAATCGGT 62.673 61.111 4.35 0.00 0.00 4.69
354 355 3.849953 GTGGCGTGCGAATCGGTC 61.850 66.667 4.35 0.00 0.00 4.79
362 363 2.882876 CGAATCGGTCGGGACAGT 59.117 61.111 0.00 0.00 46.45 3.55
363 364 1.214589 CGAATCGGTCGGGACAGTT 59.785 57.895 0.00 0.00 46.45 3.16
364 365 1.076533 CGAATCGGTCGGGACAGTTG 61.077 60.000 0.00 0.00 46.45 3.16
365 366 0.037605 GAATCGGTCGGGACAGTTGT 60.038 55.000 0.75 0.00 0.00 3.32
366 367 0.395312 AATCGGTCGGGACAGTTGTT 59.605 50.000 0.75 0.00 0.00 2.83
367 368 0.320421 ATCGGTCGGGACAGTTGTTG 60.320 55.000 0.75 0.00 0.00 3.33
368 369 2.604174 CGGTCGGGACAGTTGTTGC 61.604 63.158 0.75 0.00 0.00 4.17
369 370 2.258726 GGTCGGGACAGTTGTTGCC 61.259 63.158 0.75 0.00 0.00 4.52
370 371 1.227853 GTCGGGACAGTTGTTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
371 372 0.818040 GTCGGGACAGTTGTTGCCTT 60.818 55.000 0.00 0.00 0.00 4.35
372 373 0.759959 TCGGGACAGTTGTTGCCTTA 59.240 50.000 0.00 0.00 0.00 2.69
373 374 0.872388 CGGGACAGTTGTTGCCTTAC 59.128 55.000 0.00 0.00 0.00 2.34
374 375 1.542547 CGGGACAGTTGTTGCCTTACT 60.543 52.381 0.00 0.00 0.00 2.24
375 376 1.880027 GGGACAGTTGTTGCCTTACTG 59.120 52.381 0.00 0.00 43.72 2.74
376 377 2.486548 GGGACAGTTGTTGCCTTACTGA 60.487 50.000 8.32 0.00 41.33 3.41
377 378 3.211045 GGACAGTTGTTGCCTTACTGAA 58.789 45.455 8.32 0.00 41.33 3.02
378 379 3.821033 GGACAGTTGTTGCCTTACTGAAT 59.179 43.478 8.32 0.00 41.33 2.57
379 380 5.001232 GGACAGTTGTTGCCTTACTGAATA 58.999 41.667 8.32 0.00 41.33 1.75
380 381 5.472137 GGACAGTTGTTGCCTTACTGAATAA 59.528 40.000 8.32 0.00 41.33 1.40
381 382 6.348540 GGACAGTTGTTGCCTTACTGAATAAG 60.349 42.308 8.32 0.00 41.33 1.73
382 383 6.296026 ACAGTTGTTGCCTTACTGAATAAGA 58.704 36.000 8.32 0.00 42.75 2.10
383 384 6.428159 ACAGTTGTTGCCTTACTGAATAAGAG 59.572 38.462 8.32 0.00 42.75 2.85
384 385 5.940470 AGTTGTTGCCTTACTGAATAAGAGG 59.060 40.000 0.00 0.00 42.75 3.69
385 386 5.755409 TGTTGCCTTACTGAATAAGAGGA 57.245 39.130 0.00 0.00 42.75 3.71
386 387 6.121776 TGTTGCCTTACTGAATAAGAGGAA 57.878 37.500 0.00 0.00 42.75 3.36
387 388 6.173339 TGTTGCCTTACTGAATAAGAGGAAG 58.827 40.000 0.00 0.00 42.75 3.46
388 389 6.013725 TGTTGCCTTACTGAATAAGAGGAAGA 60.014 38.462 0.00 0.00 42.75 2.87
389 390 6.227298 TGCCTTACTGAATAAGAGGAAGAG 57.773 41.667 0.00 0.00 42.75 2.85
390 391 5.958380 TGCCTTACTGAATAAGAGGAAGAGA 59.042 40.000 0.00 0.00 42.75 3.10
391 392 6.440647 TGCCTTACTGAATAAGAGGAAGAGAA 59.559 38.462 0.00 0.00 42.75 2.87
392 393 7.038302 TGCCTTACTGAATAAGAGGAAGAGAAA 60.038 37.037 0.00 0.00 42.75 2.52
393 394 7.824779 GCCTTACTGAATAAGAGGAAGAGAAAA 59.175 37.037 0.00 0.00 42.75 2.29
394 395 9.157104 CCTTACTGAATAAGAGGAAGAGAAAAC 57.843 37.037 0.00 0.00 42.75 2.43
395 396 8.758633 TTACTGAATAAGAGGAAGAGAAAACG 57.241 34.615 0.00 0.00 0.00 3.60
396 397 6.166982 ACTGAATAAGAGGAAGAGAAAACGG 58.833 40.000 0.00 0.00 0.00 4.44
397 398 6.014499 ACTGAATAAGAGGAAGAGAAAACGGA 60.014 38.462 0.00 0.00 0.00 4.69
398 399 6.765403 TGAATAAGAGGAAGAGAAAACGGAA 58.235 36.000 0.00 0.00 0.00 4.30
399 400 7.221450 TGAATAAGAGGAAGAGAAAACGGAAA 58.779 34.615 0.00 0.00 0.00 3.13
400 401 7.717875 TGAATAAGAGGAAGAGAAAACGGAAAA 59.282 33.333 0.00 0.00 0.00 2.29
401 402 8.459911 AATAAGAGGAAGAGAAAACGGAAAAA 57.540 30.769 0.00 0.00 0.00 1.94
402 403 6.378710 AAGAGGAAGAGAAAACGGAAAAAG 57.621 37.500 0.00 0.00 0.00 2.27
403 404 4.276183 AGAGGAAGAGAAAACGGAAAAAGC 59.724 41.667 0.00 0.00 0.00 3.51
404 405 3.951680 AGGAAGAGAAAACGGAAAAAGCA 59.048 39.130 0.00 0.00 0.00 3.91
405 406 4.401202 AGGAAGAGAAAACGGAAAAAGCAA 59.599 37.500 0.00 0.00 0.00 3.91
406 407 4.503007 GGAAGAGAAAACGGAAAAAGCAAC 59.497 41.667 0.00 0.00 0.00 4.17
407 408 4.712122 AGAGAAAACGGAAAAAGCAACA 57.288 36.364 0.00 0.00 0.00 3.33
408 409 5.066968 AGAGAAAACGGAAAAAGCAACAA 57.933 34.783 0.00 0.00 0.00 2.83
409 410 5.102313 AGAGAAAACGGAAAAAGCAACAAG 58.898 37.500 0.00 0.00 0.00 3.16
410 411 4.816392 AGAAAACGGAAAAAGCAACAAGT 58.184 34.783 0.00 0.00 0.00 3.16
411 412 5.234752 AGAAAACGGAAAAAGCAACAAGTT 58.765 33.333 0.00 0.00 0.00 2.66
412 413 4.919677 AAACGGAAAAAGCAACAAGTTG 57.080 36.364 8.53 8.53 43.14 3.16
413 414 3.586100 ACGGAAAAAGCAACAAGTTGT 57.414 38.095 13.82 1.64 42.31 3.32
414 415 3.249917 ACGGAAAAAGCAACAAGTTGTG 58.750 40.909 9.79 5.25 42.31 3.33
415 416 2.029124 CGGAAAAAGCAACAAGTTGTGC 59.971 45.455 9.79 14.63 42.31 4.57
416 417 2.029124 GGAAAAAGCAACAAGTTGTGCG 59.971 45.455 9.79 5.30 42.31 5.34
417 418 0.998669 AAAAGCAACAAGTTGTGCGC 59.001 45.000 18.47 18.47 42.31 6.09
418 419 0.173255 AAAGCAACAAGTTGTGCGCT 59.827 45.000 21.59 21.59 40.36 5.92
419 420 0.526096 AAGCAACAAGTTGTGCGCTG 60.526 50.000 25.67 15.07 38.50 5.18
420 421 2.579574 GCAACAAGTTGTGCGCTGC 61.580 57.895 18.72 16.08 42.31 5.25
421 422 2.024588 AACAAGTTGTGCGCTGCG 59.975 55.556 19.17 19.17 0.00 5.18
432 433 2.726912 CGCTGCGCAAAACCACTG 60.727 61.111 13.05 0.00 0.00 3.66
433 434 2.412937 GCTGCGCAAAACCACTGT 59.587 55.556 13.05 0.00 0.00 3.55
434 435 1.658409 GCTGCGCAAAACCACTGTC 60.658 57.895 13.05 0.00 0.00 3.51
435 436 2.024918 CTGCGCAAAACCACTGTCT 58.975 52.632 13.05 0.00 0.00 3.41
436 437 0.040958 CTGCGCAAAACCACTGTCTC 60.041 55.000 13.05 0.00 0.00 3.36
437 438 0.463654 TGCGCAAAACCACTGTCTCT 60.464 50.000 8.16 0.00 0.00 3.10
438 439 0.663153 GCGCAAAACCACTGTCTCTT 59.337 50.000 0.30 0.00 0.00 2.85
439 440 1.597937 GCGCAAAACCACTGTCTCTTG 60.598 52.381 0.30 0.00 0.00 3.02
440 441 1.670811 CGCAAAACCACTGTCTCTTGT 59.329 47.619 0.00 0.00 0.00 3.16
441 442 2.539547 CGCAAAACCACTGTCTCTTGTG 60.540 50.000 0.00 0.00 0.00 3.33
442 443 2.682856 GCAAAACCACTGTCTCTTGTGA 59.317 45.455 0.00 0.00 36.38 3.58
443 444 3.242870 GCAAAACCACTGTCTCTTGTGAG 60.243 47.826 0.00 0.00 41.51 3.51
444 445 3.914426 AAACCACTGTCTCTTGTGAGT 57.086 42.857 0.00 0.00 40.98 3.41
445 446 3.914426 AACCACTGTCTCTTGTGAGTT 57.086 42.857 0.00 0.00 40.98 3.01
446 447 3.460857 ACCACTGTCTCTTGTGAGTTC 57.539 47.619 0.00 0.00 40.98 3.01
447 448 2.766263 ACCACTGTCTCTTGTGAGTTCA 59.234 45.455 0.00 0.00 40.98 3.18
448 449 3.389329 ACCACTGTCTCTTGTGAGTTCAT 59.611 43.478 0.00 0.00 40.98 2.57
449 450 3.993081 CCACTGTCTCTTGTGAGTTCATC 59.007 47.826 0.00 0.00 40.98 2.92
450 451 3.672397 CACTGTCTCTTGTGAGTTCATCG 59.328 47.826 0.00 0.00 40.98 3.84
451 452 3.570125 ACTGTCTCTTGTGAGTTCATCGA 59.430 43.478 0.00 0.00 40.98 3.59
452 453 4.165036 CTGTCTCTTGTGAGTTCATCGAG 58.835 47.826 0.00 0.00 40.98 4.04
453 454 3.821033 TGTCTCTTGTGAGTTCATCGAGA 59.179 43.478 0.00 0.00 40.98 4.04
454 455 4.083057 TGTCTCTTGTGAGTTCATCGAGAG 60.083 45.833 15.50 15.50 40.98 3.20
455 456 3.119673 TCTCTTGTGAGTTCATCGAGAGC 60.120 47.826 16.20 0.00 40.98 4.09
456 457 1.916651 CTTGTGAGTTCATCGAGAGCG 59.083 52.381 0.00 0.00 39.35 5.03
457 458 6.435479 CTCTTGTGAGTTCATCGAGAGCGA 62.435 50.000 12.12 0.00 41.97 4.93
467 468 2.388310 TCGAGAGCGAGAGAAAGAGA 57.612 50.000 0.00 0.00 42.51 3.10
468 469 2.276201 TCGAGAGCGAGAGAAAGAGAG 58.724 52.381 0.00 0.00 42.51 3.20
469 470 2.093921 TCGAGAGCGAGAGAAAGAGAGA 60.094 50.000 0.00 0.00 42.51 3.10
470 471 2.285220 CGAGAGCGAGAGAAAGAGAGAG 59.715 54.545 0.00 0.00 40.82 3.20
471 472 3.531538 GAGAGCGAGAGAAAGAGAGAGA 58.468 50.000 0.00 0.00 0.00 3.10
472 473 3.535561 AGAGCGAGAGAAAGAGAGAGAG 58.464 50.000 0.00 0.00 0.00 3.20
473 474 3.197766 AGAGCGAGAGAAAGAGAGAGAGA 59.802 47.826 0.00 0.00 0.00 3.10
474 475 3.535561 AGCGAGAGAAAGAGAGAGAGAG 58.464 50.000 0.00 0.00 0.00 3.20
475 476 3.197766 AGCGAGAGAAAGAGAGAGAGAGA 59.802 47.826 0.00 0.00 0.00 3.10
476 477 3.557595 GCGAGAGAAAGAGAGAGAGAGAG 59.442 52.174 0.00 0.00 0.00 3.20
477 478 4.122776 CGAGAGAAAGAGAGAGAGAGAGG 58.877 52.174 0.00 0.00 0.00 3.69
478 479 4.455606 GAGAGAAAGAGAGAGAGAGAGGG 58.544 52.174 0.00 0.00 0.00 4.30
479 480 4.111577 AGAGAAAGAGAGAGAGAGAGGGA 58.888 47.826 0.00 0.00 0.00 4.20
480 481 4.540099 AGAGAAAGAGAGAGAGAGAGGGAA 59.460 45.833 0.00 0.00 0.00 3.97
481 482 4.600062 AGAAAGAGAGAGAGAGAGGGAAC 58.400 47.826 0.00 0.00 0.00 3.62
482 483 2.710096 AGAGAGAGAGAGAGGGAACG 57.290 55.000 0.00 0.00 0.00 3.95
483 484 2.193127 AGAGAGAGAGAGAGGGAACGA 58.807 52.381 0.00 0.00 0.00 3.85
484 485 2.170607 AGAGAGAGAGAGAGGGAACGAG 59.829 54.545 0.00 0.00 0.00 4.18
485 486 1.021968 GAGAGAGAGAGGGAACGAGC 58.978 60.000 0.00 0.00 0.00 5.03
486 487 0.746563 AGAGAGAGAGGGAACGAGCG 60.747 60.000 0.00 0.00 0.00 5.03
487 488 2.103340 GAGAGAGGGAACGAGCGC 59.897 66.667 0.00 0.00 0.00 5.92
488 489 3.743091 GAGAGAGGGAACGAGCGCG 62.743 68.421 8.75 8.75 44.79 6.86
489 490 4.856607 GAGAGGGAACGAGCGCGG 62.857 72.222 15.86 0.00 43.17 6.46
511 512 3.567308 TGCCTGACAGAACCTGCT 58.433 55.556 3.32 0.00 34.37 4.24
512 513 1.372683 TGCCTGACAGAACCTGCTC 59.627 57.895 3.32 0.00 34.37 4.26
513 514 1.123861 TGCCTGACAGAACCTGCTCT 61.124 55.000 3.32 0.00 34.37 4.09
514 515 0.036022 GCCTGACAGAACCTGCTCTT 59.964 55.000 3.32 0.00 34.37 2.85
515 516 1.805869 CCTGACAGAACCTGCTCTTG 58.194 55.000 3.32 0.00 34.37 3.02
516 517 1.155042 CTGACAGAACCTGCTCTTGC 58.845 55.000 0.00 0.00 34.37 4.01
517 518 0.761187 TGACAGAACCTGCTCTTGCT 59.239 50.000 0.00 0.00 40.48 3.91
518 519 1.970640 TGACAGAACCTGCTCTTGCTA 59.029 47.619 0.00 0.00 40.48 3.49
519 520 2.028658 TGACAGAACCTGCTCTTGCTAG 60.029 50.000 0.00 0.00 40.48 3.42
520 521 1.277557 ACAGAACCTGCTCTTGCTAGG 59.722 52.381 0.00 0.00 40.69 3.02
521 522 0.251634 AGAACCTGCTCTTGCTAGGC 59.748 55.000 0.00 0.00 39.46 3.93
522 523 0.036010 GAACCTGCTCTTGCTAGGCA 60.036 55.000 9.94 9.94 39.46 4.75
523 524 0.322008 AACCTGCTCTTGCTAGGCAC 60.322 55.000 7.10 0.00 38.71 5.01
524 525 1.451028 CCTGCTCTTGCTAGGCACC 60.451 63.158 7.10 0.00 38.71 5.01
525 526 1.297689 CTGCTCTTGCTAGGCACCA 59.702 57.895 7.10 0.00 38.71 4.17
526 527 0.743701 CTGCTCTTGCTAGGCACCAG 60.744 60.000 7.10 0.85 38.71 4.00
527 528 1.451028 GCTCTTGCTAGGCACCAGG 60.451 63.158 0.00 0.00 38.71 4.45
528 529 1.222936 CTCTTGCTAGGCACCAGGG 59.777 63.158 0.00 0.00 38.71 4.45
529 530 1.229496 TCTTGCTAGGCACCAGGGA 60.229 57.895 0.00 0.00 38.71 4.20
530 531 0.840288 TCTTGCTAGGCACCAGGGAA 60.840 55.000 0.00 0.00 38.71 3.97
531 532 0.038166 CTTGCTAGGCACCAGGGAAA 59.962 55.000 0.00 0.00 38.71 3.13
532 533 0.480690 TTGCTAGGCACCAGGGAAAA 59.519 50.000 0.00 0.00 38.71 2.29
533 534 0.704076 TGCTAGGCACCAGGGAAAAT 59.296 50.000 0.00 0.00 31.71 1.82
534 535 1.340991 TGCTAGGCACCAGGGAAAATC 60.341 52.381 0.00 0.00 31.71 2.17
535 536 1.668419 CTAGGCACCAGGGAAAATCG 58.332 55.000 0.00 0.00 0.00 3.34
536 537 0.254747 TAGGCACCAGGGAAAATCGG 59.745 55.000 0.00 0.00 0.00 4.18
537 538 1.001393 GGCACCAGGGAAAATCGGA 60.001 57.895 0.00 0.00 0.00 4.55
538 539 1.313091 GGCACCAGGGAAAATCGGAC 61.313 60.000 0.00 0.00 0.00 4.79
539 540 1.644786 GCACCAGGGAAAATCGGACG 61.645 60.000 0.00 0.00 0.00 4.79
540 541 0.036765 CACCAGGGAAAATCGGACGA 60.037 55.000 0.00 0.00 0.00 4.20
541 542 0.249398 ACCAGGGAAAATCGGACGAG 59.751 55.000 0.00 0.00 0.00 4.18
542 543 0.535335 CCAGGGAAAATCGGACGAGA 59.465 55.000 0.00 0.00 0.00 4.04
543 544 1.641577 CAGGGAAAATCGGACGAGAC 58.358 55.000 0.00 0.00 0.00 3.36
544 545 1.204941 CAGGGAAAATCGGACGAGACT 59.795 52.381 0.00 0.00 0.00 3.24
545 546 1.900486 AGGGAAAATCGGACGAGACTT 59.100 47.619 0.00 0.00 0.00 3.01
546 547 2.000447 GGGAAAATCGGACGAGACTTG 59.000 52.381 0.00 0.00 0.00 3.16
547 548 1.393883 GGAAAATCGGACGAGACTTGC 59.606 52.381 0.00 0.00 0.00 4.01
548 549 1.393883 GAAAATCGGACGAGACTTGCC 59.606 52.381 0.00 0.00 0.00 4.52
549 550 0.608640 AAATCGGACGAGACTTGCCT 59.391 50.000 0.00 0.00 0.00 4.75
550 551 0.108615 AATCGGACGAGACTTGCCTG 60.109 55.000 0.00 0.00 0.00 4.85
551 552 2.564553 ATCGGACGAGACTTGCCTGC 62.565 60.000 0.00 0.00 0.00 4.85
552 553 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
553 554 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
554 555 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
555 556 2.159819 GACGAGACTTGCCTGCTCCA 62.160 60.000 0.00 0.00 0.00 3.86
556 557 1.739562 CGAGACTTGCCTGCTCCAC 60.740 63.158 0.00 0.00 0.00 4.02
557 558 1.376553 GAGACTTGCCTGCTCCACC 60.377 63.158 0.00 0.00 0.00 4.61
558 559 2.743928 GACTTGCCTGCTCCACCG 60.744 66.667 0.00 0.00 0.00 4.94
559 560 4.335647 ACTTGCCTGCTCCACCGG 62.336 66.667 0.00 0.00 0.00 5.28
578 579 2.672996 GTGTGCCCATCCGTGCTT 60.673 61.111 0.00 0.00 0.00 3.91
579 580 2.359850 TGTGCCCATCCGTGCTTC 60.360 61.111 0.00 0.00 0.00 3.86
580 581 3.134127 GTGCCCATCCGTGCTTCC 61.134 66.667 0.00 0.00 0.00 3.46
581 582 4.776322 TGCCCATCCGTGCTTCCG 62.776 66.667 0.00 0.00 0.00 4.30
585 586 2.202690 CATCCGTGCTTCCGCGTA 60.203 61.111 4.92 0.00 43.11 4.42
586 587 2.202703 ATCCGTGCTTCCGCGTAC 60.203 61.111 4.92 0.00 43.11 3.67
587 588 4.764336 TCCGTGCTTCCGCGTACG 62.764 66.667 11.84 11.84 43.11 3.67
589 590 3.823421 CGTGCTTCCGCGTACGTG 61.823 66.667 21.58 21.58 39.95 4.49
590 591 3.475774 GTGCTTCCGCGTACGTGG 61.476 66.667 36.25 36.25 46.45 4.94
593 594 2.431942 CTTCCGCGTACGTGGCTT 60.432 61.111 36.93 0.00 44.84 4.35
594 595 2.726691 CTTCCGCGTACGTGGCTTG 61.727 63.158 36.93 25.35 44.84 4.01
595 596 3.210223 TTCCGCGTACGTGGCTTGA 62.210 57.895 36.93 21.05 44.84 3.02
596 597 2.495366 TTCCGCGTACGTGGCTTGAT 62.495 55.000 36.93 0.00 44.84 2.57
597 598 2.098233 CCGCGTACGTGGCTTGATT 61.098 57.895 32.68 0.00 39.06 2.57
598 599 1.632046 CCGCGTACGTGGCTTGATTT 61.632 55.000 32.68 0.00 39.06 2.17
599 600 0.518355 CGCGTACGTGGCTTGATTTG 60.518 55.000 20.84 0.00 33.53 2.32
600 601 0.793861 GCGTACGTGGCTTGATTTGA 59.206 50.000 17.90 0.00 0.00 2.69
601 602 1.396996 GCGTACGTGGCTTGATTTGAT 59.603 47.619 17.90 0.00 0.00 2.57
602 603 2.159572 GCGTACGTGGCTTGATTTGATT 60.160 45.455 17.90 0.00 0.00 2.57
603 604 3.062909 GCGTACGTGGCTTGATTTGATTA 59.937 43.478 17.90 0.00 0.00 1.75
604 605 4.782195 GCGTACGTGGCTTGATTTGATTAG 60.782 45.833 17.90 0.00 0.00 1.73
605 606 4.565166 CGTACGTGGCTTGATTTGATTAGA 59.435 41.667 7.22 0.00 0.00 2.10
606 607 5.062934 CGTACGTGGCTTGATTTGATTAGAA 59.937 40.000 7.22 0.00 0.00 2.10
607 608 5.296813 ACGTGGCTTGATTTGATTAGAAC 57.703 39.130 0.00 0.00 0.00 3.01
608 609 4.759693 ACGTGGCTTGATTTGATTAGAACA 59.240 37.500 0.00 0.00 0.00 3.18
609 610 5.240623 ACGTGGCTTGATTTGATTAGAACAA 59.759 36.000 0.00 0.00 0.00 2.83
610 611 6.148948 CGTGGCTTGATTTGATTAGAACAAA 58.851 36.000 0.00 0.00 40.62 2.83
611 612 6.640499 CGTGGCTTGATTTGATTAGAACAAAA 59.360 34.615 0.00 0.00 39.95 2.44
612 613 7.329226 CGTGGCTTGATTTGATTAGAACAAAAT 59.671 33.333 0.00 0.00 39.95 1.82
613 614 9.638239 GTGGCTTGATTTGATTAGAACAAAATA 57.362 29.630 0.00 0.00 39.95 1.40
618 619 9.651913 TTGATTTGATTAGAACAAAATAAGGCC 57.348 29.630 0.00 0.00 39.95 5.19
619 620 9.034800 TGATTTGATTAGAACAAAATAAGGCCT 57.965 29.630 0.00 0.00 39.95 5.19
620 621 9.305925 GATTTGATTAGAACAAAATAAGGCCTG 57.694 33.333 5.69 0.00 39.95 4.85
621 622 8.415950 TTTGATTAGAACAAAATAAGGCCTGA 57.584 30.769 5.69 0.00 34.89 3.86
622 623 7.391148 TGATTAGAACAAAATAAGGCCTGAC 57.609 36.000 5.69 0.00 0.00 3.51
623 624 6.377146 TGATTAGAACAAAATAAGGCCTGACC 59.623 38.462 5.69 0.00 39.61 4.02
624 625 3.431415 AGAACAAAATAAGGCCTGACCC 58.569 45.455 5.69 0.00 40.58 4.46
625 626 2.231716 ACAAAATAAGGCCTGACCCC 57.768 50.000 5.69 0.00 40.58 4.95
626 627 1.102978 CAAAATAAGGCCTGACCCCG 58.897 55.000 5.69 0.00 40.58 5.73
627 628 0.683179 AAAATAAGGCCTGACCCCGC 60.683 55.000 5.69 0.00 40.58 6.13
628 629 2.567664 AAATAAGGCCTGACCCCGCC 62.568 60.000 5.69 0.00 46.09 6.13
635 636 3.012722 CTGACCCCGCCCCCTTAA 61.013 66.667 0.00 0.00 0.00 1.85
636 637 2.532199 TGACCCCGCCCCCTTAAA 60.532 61.111 0.00 0.00 0.00 1.52
637 638 2.144859 CTGACCCCGCCCCCTTAAAA 62.145 60.000 0.00 0.00 0.00 1.52
638 639 1.308666 GACCCCGCCCCCTTAAAAT 59.691 57.895 0.00 0.00 0.00 1.82
639 640 0.754217 GACCCCGCCCCCTTAAAATC 60.754 60.000 0.00 0.00 0.00 2.17
640 641 1.308326 CCCCGCCCCCTTAAAATCA 59.692 57.895 0.00 0.00 0.00 2.57
641 642 0.755327 CCCCGCCCCCTTAAAATCAG 60.755 60.000 0.00 0.00 0.00 2.90
642 643 0.755327 CCCGCCCCCTTAAAATCAGG 60.755 60.000 0.00 0.00 0.00 3.86
662 663 8.748179 ATCAGGGGATGATTAGATTAGAAAGA 57.252 34.615 0.00 0.00 46.97 2.52
663 664 8.567198 TCAGGGGATGATTAGATTAGAAAGAA 57.433 34.615 0.00 0.00 31.12 2.52
664 665 9.003145 TCAGGGGATGATTAGATTAGAAAGAAA 57.997 33.333 0.00 0.00 31.12 2.52
665 666 9.632638 CAGGGGATGATTAGATTAGAAAGAAAA 57.367 33.333 0.00 0.00 0.00 2.29
690 691 7.800155 AAAAACAACCATAAAATGAAGTGGG 57.200 32.000 0.00 0.00 36.05 4.61
691 692 6.739331 AAACAACCATAAAATGAAGTGGGA 57.261 33.333 0.00 0.00 36.05 4.37
692 693 5.982890 ACAACCATAAAATGAAGTGGGAG 57.017 39.130 0.00 0.00 36.05 4.30
693 694 4.220602 ACAACCATAAAATGAAGTGGGAGC 59.779 41.667 0.00 0.00 36.05 4.70
694 695 4.046286 ACCATAAAATGAAGTGGGAGCA 57.954 40.909 0.00 0.00 36.05 4.26
695 696 3.763897 ACCATAAAATGAAGTGGGAGCAC 59.236 43.478 0.00 0.00 36.05 4.40
696 697 3.131046 CCATAAAATGAAGTGGGAGCACC 59.869 47.826 0.00 0.00 40.81 5.01
697 698 1.247567 AAAATGAAGTGGGAGCACCG 58.752 50.000 0.00 0.00 44.64 4.94
698 699 0.400213 AAATGAAGTGGGAGCACCGA 59.600 50.000 0.00 0.00 44.64 4.69
699 700 0.620556 AATGAAGTGGGAGCACCGAT 59.379 50.000 0.00 0.00 44.64 4.18
700 701 0.107508 ATGAAGTGGGAGCACCGATG 60.108 55.000 0.00 0.00 44.64 3.84
701 702 1.450312 GAAGTGGGAGCACCGATGG 60.450 63.158 0.00 0.00 44.64 3.51
702 703 1.899437 GAAGTGGGAGCACCGATGGA 61.899 60.000 0.00 0.00 44.64 3.41
703 704 1.488705 AAGTGGGAGCACCGATGGAA 61.489 55.000 0.00 0.00 44.64 3.53
704 705 1.450312 GTGGGAGCACCGATGGAAG 60.450 63.158 0.00 0.00 44.64 3.46
705 706 2.514824 GGGAGCACCGATGGAAGC 60.515 66.667 0.00 0.00 36.97 3.86
706 707 2.268920 GGAGCACCGATGGAAGCA 59.731 61.111 7.52 0.00 31.94 3.91
707 708 1.153086 GGAGCACCGATGGAAGCAT 60.153 57.895 7.52 0.00 31.94 3.79
708 709 0.106708 GGAGCACCGATGGAAGCATA 59.893 55.000 7.52 0.00 31.94 3.14
709 710 1.475034 GGAGCACCGATGGAAGCATAA 60.475 52.381 7.52 0.00 31.94 1.90
710 711 1.869767 GAGCACCGATGGAAGCATAAG 59.130 52.381 7.52 0.00 31.94 1.73
711 712 0.947244 GCACCGATGGAAGCATAAGG 59.053 55.000 0.00 0.00 0.00 2.69
712 713 1.475034 GCACCGATGGAAGCATAAGGA 60.475 52.381 0.00 0.00 0.00 3.36
713 714 2.487934 CACCGATGGAAGCATAAGGAG 58.512 52.381 0.00 0.00 0.00 3.69
714 715 1.417890 ACCGATGGAAGCATAAGGAGG 59.582 52.381 0.00 0.00 0.00 4.30
715 716 1.271054 CCGATGGAAGCATAAGGAGGG 60.271 57.143 0.00 0.00 0.00 4.30
716 717 1.694150 CGATGGAAGCATAAGGAGGGA 59.306 52.381 0.00 0.00 0.00 4.20
717 718 2.289320 CGATGGAAGCATAAGGAGGGAG 60.289 54.545 0.00 0.00 0.00 4.30
718 719 0.839946 TGGAAGCATAAGGAGGGAGC 59.160 55.000 0.00 0.00 0.00 4.70
719 720 0.839946 GGAAGCATAAGGAGGGAGCA 59.160 55.000 0.00 0.00 0.00 4.26
720 721 1.202746 GGAAGCATAAGGAGGGAGCAG 60.203 57.143 0.00 0.00 0.00 4.24
721 722 0.842635 AAGCATAAGGAGGGAGCAGG 59.157 55.000 0.00 0.00 0.00 4.85
722 723 1.228094 GCATAAGGAGGGAGCAGGC 60.228 63.158 0.00 0.00 0.00 4.85
723 724 1.987807 GCATAAGGAGGGAGCAGGCA 61.988 60.000 0.00 0.00 0.00 4.75
724 725 0.548031 CATAAGGAGGGAGCAGGCAA 59.452 55.000 0.00 0.00 0.00 4.52
725 726 0.842635 ATAAGGAGGGAGCAGGCAAG 59.157 55.000 0.00 0.00 0.00 4.01
726 727 1.915078 TAAGGAGGGAGCAGGCAAGC 61.915 60.000 0.00 0.00 0.00 4.01
727 728 4.811364 GGAGGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
735 736 4.729918 CAGGCAAGCCGGGCTCTT 62.730 66.667 24.08 4.32 42.46 2.85
742 743 1.681486 AAGCCGGGCTCTTCTCTAGC 61.681 60.000 24.08 0.00 38.25 3.42
756 757 6.051717 TCTTCTCTAGCCACTTGAATATTGC 58.948 40.000 0.00 0.00 0.00 3.56
781 782 2.813179 CGTGGCGCCTTGTATGAGC 61.813 63.158 29.70 5.35 0.00 4.26
783 784 2.190578 GGCGCCTTGTATGAGCCT 59.809 61.111 22.15 0.00 44.06 4.58
793 799 4.813161 CCTTGTATGAGCCTATCACAGTTG 59.187 45.833 0.00 0.00 41.91 3.16
811 817 2.177394 TGCTCGCCATTTTGACTACA 57.823 45.000 0.00 0.00 0.00 2.74
812 818 2.076100 TGCTCGCCATTTTGACTACAG 58.924 47.619 0.00 0.00 0.00 2.74
813 819 2.076863 GCTCGCCATTTTGACTACAGT 58.923 47.619 0.00 0.00 0.00 3.55
814 820 3.259064 GCTCGCCATTTTGACTACAGTA 58.741 45.455 0.00 0.00 0.00 2.74
815 821 3.062234 GCTCGCCATTTTGACTACAGTAC 59.938 47.826 0.00 0.00 0.00 2.73
816 822 4.495422 CTCGCCATTTTGACTACAGTACT 58.505 43.478 0.00 0.00 0.00 2.73
912 923 3.306818 CGCGCCTATAAGAAAGACTACC 58.693 50.000 0.00 0.00 0.00 3.18
1395 1421 1.067821 GTCCTCGGTAGCTTCATCCTG 59.932 57.143 0.00 0.00 0.00 3.86
1621 1688 3.383505 CCATGTTCATCAGCATGTGGATT 59.616 43.478 0.00 0.00 40.42 3.01
1885 2024 2.503356 CACCTTTAGCTCCTGGATGTCT 59.497 50.000 0.00 0.00 0.00 3.41
1909 2048 3.636313 CTTCCCCGTCGCGCTTGTA 62.636 63.158 5.56 0.00 0.00 2.41
2073 3067 2.382882 TGGTCAAACCATGTTGCTTCA 58.617 42.857 0.00 0.00 44.79 3.02
2075 3069 2.100584 GGTCAAACCATGTTGCTTCACA 59.899 45.455 0.00 0.00 38.42 3.58
2124 3171 4.338400 GGCTTTCTGGTCAGTGTTAAACTT 59.662 41.667 0.00 0.00 36.83 2.66
2163 3213 2.816087 TGATGGCTGTTCTGCTTTCTTC 59.184 45.455 2.15 0.00 0.00 2.87
2214 3267 2.642154 TGGTTCTAGCCGTTTTTGGA 57.358 45.000 0.00 0.00 0.00 3.53
2228 3281 6.513720 GCCGTTTTTGGAGTATGTTTCTACAA 60.514 38.462 0.00 0.00 37.91 2.41
2232 3285 9.612620 GTTTTTGGAGTATGTTTCTACAATCTG 57.387 33.333 0.00 0.00 35.93 2.90
2233 3286 8.918202 TTTTGGAGTATGTTTCTACAATCTGT 57.082 30.769 0.00 0.00 35.93 3.41
2234 3287 8.918202 TTTGGAGTATGTTTCTACAATCTGTT 57.082 30.769 0.00 0.00 35.93 3.16
2236 3289 8.322906 TGGAGTATGTTTCTACAATCTGTTTG 57.677 34.615 0.00 0.00 37.91 2.93
2238 3291 9.431887 GGAGTATGTTTCTACAATCTGTTTGTA 57.568 33.333 10.08 10.08 46.75 2.41
2245 3298 9.821662 GTTTCTACAATCTGTTTGTATTGTACC 57.178 33.333 10.74 0.00 46.88 3.34
2247 3300 8.997621 TCTACAATCTGTTTGTATTGTACCTC 57.002 34.615 10.74 0.00 46.88 3.85
2248 3301 8.590204 TCTACAATCTGTTTGTATTGTACCTCA 58.410 33.333 10.74 0.00 46.88 3.86
2249 3302 9.214957 CTACAATCTGTTTGTATTGTACCTCAA 57.785 33.333 10.74 0.00 46.88 3.02
2252 3305 8.567948 CAATCTGTTTGTATTGTACCTCAAGTT 58.432 33.333 0.00 0.00 39.55 2.66
2255 3308 7.441157 TCTGTTTGTATTGTACCTCAAGTTCTG 59.559 37.037 0.00 0.00 39.55 3.02
2256 3309 7.276658 TGTTTGTATTGTACCTCAAGTTCTGA 58.723 34.615 0.00 0.00 39.55 3.27
2257 3310 7.771361 TGTTTGTATTGTACCTCAAGTTCTGAA 59.229 33.333 0.00 0.00 39.55 3.02
2258 3311 7.724305 TTGTATTGTACCTCAAGTTCTGAAC 57.276 36.000 12.54 12.54 39.55 3.18
2260 3313 4.764050 TTGTACCTCAAGTTCTGAACCA 57.236 40.909 16.48 2.71 32.17 3.67
2261 3314 4.764050 TGTACCTCAAGTTCTGAACCAA 57.236 40.909 16.48 2.40 32.17 3.67
2262 3315 5.105567 TGTACCTCAAGTTCTGAACCAAA 57.894 39.130 16.48 2.06 32.17 3.28
2263 3316 5.502079 TGTACCTCAAGTTCTGAACCAAAA 58.498 37.500 16.48 0.38 32.17 2.44
2286 3339 5.652994 AATTAACACGCCATTATGGTTGT 57.347 34.783 13.28 12.99 40.46 3.32
2356 3410 0.678950 TTGTGCTGTGGATGACGAGA 59.321 50.000 0.00 0.00 0.00 4.04
2462 3516 3.444916 CATGATCCTGCATGCAGTTTTC 58.555 45.455 38.22 30.33 42.15 2.29
2463 3517 1.469703 TGATCCTGCATGCAGTTTTCG 59.530 47.619 38.22 25.75 42.15 3.46
2472 3526 3.180387 GCATGCAGTTTTCGAGTTTTGAC 59.820 43.478 14.21 0.00 0.00 3.18
2482 3536 6.928979 TTTCGAGTTTTGACCAGACAAATA 57.071 33.333 0.00 0.00 39.09 1.40
2486 3540 6.073276 TCGAGTTTTGACCAGACAAATATGTG 60.073 38.462 0.00 0.00 40.74 3.21
2492 3546 2.083774 CCAGACAAATATGTGGCACGT 58.916 47.619 17.65 17.65 40.74 4.49
2507 3561 0.933097 CACGTGCTCACTGGATATGC 59.067 55.000 0.82 0.00 0.00 3.14
2508 3562 0.826715 ACGTGCTCACTGGATATGCT 59.173 50.000 0.00 0.00 0.00 3.79
2515 3569 3.305676 GCTCACTGGATATGCTGTATCGT 60.306 47.826 6.44 0.00 0.00 3.73
2540 3598 7.117523 GTCTTACTAATGCAGATCATGATGACC 59.882 40.741 14.30 0.00 35.13 4.02
2789 3847 0.955905 TCATCACGGAGTTCACGTCA 59.044 50.000 0.00 0.00 41.61 4.35
2879 3937 3.402681 CTGCTCATGGTCCCCGGT 61.403 66.667 0.00 0.00 0.00 5.28
3029 4087 0.526662 CAACTCTCGCCGTCCTACTT 59.473 55.000 0.00 0.00 0.00 2.24
3116 4174 1.986882 AAAAACTGCTGCCTACTGCT 58.013 45.000 0.00 0.00 41.07 4.24
3146 4204 3.102204 TGTACTTACTACTTGCTCCCCC 58.898 50.000 0.00 0.00 0.00 5.40
3330 4390 6.004574 GGAAGGAGTTCTCCTGTACATTTTT 58.995 40.000 20.29 3.27 40.59 1.94
3341 4401 7.656137 TCTCCTGTACATTTTTAGACAACAGAC 59.344 37.037 0.00 0.00 35.93 3.51
3343 4403 7.441157 TCCTGTACATTTTTAGACAACAGACTG 59.559 37.037 0.00 0.00 35.93 3.51
3346 4406 7.551262 TGTACATTTTTAGACAACAGACTGTGT 59.449 33.333 9.33 9.44 43.24 3.72
3405 4466 6.157211 TCCTTCGTCTCAAAATAAGTGTCTC 58.843 40.000 0.00 0.00 0.00 3.36
3408 4469 7.042051 CCTTCGTCTCAAAATAAGTGTCTCAAA 60.042 37.037 0.00 0.00 0.00 2.69
3409 4470 7.173863 TCGTCTCAAAATAAGTGTCTCAAAC 57.826 36.000 0.00 0.00 0.00 2.93
3423 4484 9.880157 AAGTGTCTCAAACTTAGTACAACTTTA 57.120 29.630 0.00 0.00 36.11 1.85
3453 4538 1.459450 TATTTTGGGACGCAAGGAGC 58.541 50.000 5.01 0.00 46.39 4.70
3523 4617 0.107017 CCCCTGTGCACTAGATTGGG 60.107 60.000 19.41 17.28 0.00 4.12
3528 4622 1.555075 TGTGCACTAGATTGGGACTCC 59.445 52.381 19.41 0.00 0.00 3.85
3534 4630 4.194640 CACTAGATTGGGACTCCACATTG 58.805 47.826 0.00 0.00 43.94 2.82
3553 4649 1.419762 TGCCTCATGTGGTTGTACACT 59.580 47.619 15.01 0.00 41.84 3.55
3581 4677 0.385473 CCCACGCACGTTTCAACATC 60.385 55.000 0.00 0.00 0.00 3.06
3596 4693 5.282055 TCAACATCTGTATGGATCACCTC 57.718 43.478 0.00 0.00 37.43 3.85
3597 4694 4.716287 TCAACATCTGTATGGATCACCTCA 59.284 41.667 0.00 0.00 37.43 3.86
3610 4707 2.684104 CCTCAGAGAGGGGTCGGA 59.316 66.667 5.13 0.00 45.43 4.55
3611 4708 1.454847 CCTCAGAGAGGGGTCGGAG 60.455 68.421 5.13 0.00 45.43 4.63
3628 4725 6.015688 GGGTCGGAGATGTGTACTGAATTATA 60.016 42.308 0.00 0.00 40.67 0.98
3693 4790 2.724454 AGATTCTTCTTCCTCGTCGGA 58.276 47.619 0.00 0.00 41.06 4.55
3737 4834 2.032054 TCTTCTTCTTTGTGCTGTTGCG 59.968 45.455 0.00 0.00 43.34 4.85
3738 4835 1.378531 TCTTCTTTGTGCTGTTGCGT 58.621 45.000 0.00 0.00 43.34 5.24
3743 4840 0.746204 TTTGTGCTGTTGCGTGAGGA 60.746 50.000 0.00 0.00 43.34 3.71
3750 4847 0.605319 TGTTGCGTGAGGAATGTCCC 60.605 55.000 0.00 0.00 45.26 4.46
3809 4909 4.227197 TGGATCCTAGTTCTCTTCCATCC 58.773 47.826 14.23 0.00 0.00 3.51
3913 5014 2.093973 TCTTTTTGGCACCGAAGCAAAA 60.094 40.909 0.00 0.00 35.70 2.44
4074 5184 1.698506 TGCTGGTTGTTTTAGGGTGG 58.301 50.000 0.00 0.00 0.00 4.61
4080 5190 3.181448 TGGTTGTTTTAGGGTGGTCTCTC 60.181 47.826 0.00 0.00 0.00 3.20
4091 5201 6.593759 AGGGTGGTCTCTCTTATTCTAGTA 57.406 41.667 0.00 0.00 0.00 1.82
4119 5229 1.808512 CGTGTGTTAGGGTGTGCTTGA 60.809 52.381 0.00 0.00 0.00 3.02
4198 5308 1.780503 AAAAAGTTGCCAGACCAGCT 58.219 45.000 0.00 0.00 0.00 4.24
4199 5309 1.035139 AAAAGTTGCCAGACCAGCTG 58.965 50.000 6.78 6.78 44.49 4.24
4200 5310 1.458639 AAAGTTGCCAGACCAGCTGC 61.459 55.000 8.66 0.00 43.50 5.25
4201 5311 2.595463 GTTGCCAGACCAGCTGCA 60.595 61.111 8.66 0.00 43.50 4.41
4202 5312 2.281970 TTGCCAGACCAGCTGCAG 60.282 61.111 10.11 10.11 43.50 4.41
4203 5313 3.124051 TTGCCAGACCAGCTGCAGT 62.124 57.895 16.64 0.81 43.50 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 4.862641 AACTAACATTGCCTCCCTACAT 57.137 40.909 0.00 0.00 0.00 2.29
141 142 5.356190 GGTTTAACTAACATTGCCTCCCTAC 59.644 44.000 0.00 0.00 38.55 3.18
255 256 0.814410 CTCCTACTCCTACTCGCGCA 60.814 60.000 8.75 0.00 0.00 6.09
256 257 1.508808 CCTCCTACTCCTACTCGCGC 61.509 65.000 0.00 0.00 0.00 6.86
257 258 0.179051 ACCTCCTACTCCTACTCGCG 60.179 60.000 0.00 0.00 0.00 5.87
258 259 1.134159 TCACCTCCTACTCCTACTCGC 60.134 57.143 0.00 0.00 0.00 5.03
259 260 2.563702 GTCACCTCCTACTCCTACTCG 58.436 57.143 0.00 0.00 0.00 4.18
260 261 2.745812 CGGTCACCTCCTACTCCTACTC 60.746 59.091 0.00 0.00 0.00 2.59
261 262 1.212441 CGGTCACCTCCTACTCCTACT 59.788 57.143 0.00 0.00 0.00 2.57
262 263 1.677942 CGGTCACCTCCTACTCCTAC 58.322 60.000 0.00 0.00 0.00 3.18
263 264 0.106819 GCGGTCACCTCCTACTCCTA 60.107 60.000 0.00 0.00 0.00 2.94
264 265 1.380112 GCGGTCACCTCCTACTCCT 60.380 63.158 0.00 0.00 0.00 3.69
265 266 2.772691 CGCGGTCACCTCCTACTCC 61.773 68.421 0.00 0.00 0.00 3.85
266 267 2.772691 CCGCGGTCACCTCCTACTC 61.773 68.421 19.50 0.00 0.00 2.59
267 268 2.754658 CCGCGGTCACCTCCTACT 60.755 66.667 19.50 0.00 0.00 2.57
268 269 3.066814 ACCGCGGTCACCTCCTAC 61.067 66.667 28.70 0.00 0.00 3.18
269 270 3.066190 CACCGCGGTCACCTCCTA 61.066 66.667 31.80 0.00 0.00 2.94
270 271 4.988716 TCACCGCGGTCACCTCCT 62.989 66.667 31.80 0.00 0.00 3.69
271 272 4.436998 CTCACCGCGGTCACCTCC 62.437 72.222 31.80 0.00 0.00 4.30
282 283 4.379243 AAGAGGGCGTGCTCACCG 62.379 66.667 0.00 0.00 0.00 4.94
283 284 2.435059 GAAGAGGGCGTGCTCACC 60.435 66.667 0.00 0.00 0.00 4.02
284 285 2.811317 CGAAGAGGGCGTGCTCAC 60.811 66.667 0.00 0.00 0.00 3.51
285 286 3.303135 ACGAAGAGGGCGTGCTCA 61.303 61.111 0.00 0.00 40.94 4.26
290 291 2.049433 CGTTCACGAAGAGGGCGT 60.049 61.111 0.00 0.00 43.67 5.68
291 292 2.049433 ACGTTCACGAAGAGGGCG 60.049 61.111 6.30 0.00 43.02 6.13
292 293 2.027625 CCACGTTCACGAAGAGGGC 61.028 63.158 6.30 0.00 43.02 5.19
293 294 1.374252 CCCACGTTCACGAAGAGGG 60.374 63.158 6.30 7.77 43.02 4.30
294 295 0.246635 ATCCCACGTTCACGAAGAGG 59.753 55.000 6.30 2.58 43.02 3.69
295 296 1.350193 CATCCCACGTTCACGAAGAG 58.650 55.000 6.30 0.00 43.02 2.85
296 297 0.037697 CCATCCCACGTTCACGAAGA 60.038 55.000 6.30 0.04 43.02 2.87
297 298 1.635663 GCCATCCCACGTTCACGAAG 61.636 60.000 6.30 0.00 43.02 3.79
298 299 1.669760 GCCATCCCACGTTCACGAA 60.670 57.895 6.30 0.00 43.02 3.85
299 300 2.047655 GCCATCCCACGTTCACGA 60.048 61.111 6.30 0.00 43.02 4.35
300 301 2.358125 TGCCATCCCACGTTCACG 60.358 61.111 0.00 0.00 46.33 4.35
301 302 3.263941 GTGCCATCCCACGTTCAC 58.736 61.111 0.00 0.00 0.00 3.18
307 308 1.635663 CTTCGAACGTGCCATCCCAC 61.636 60.000 0.00 0.00 0.00 4.61
308 309 1.375396 CTTCGAACGTGCCATCCCA 60.375 57.895 0.00 0.00 0.00 4.37
309 310 2.106683 CCTTCGAACGTGCCATCCC 61.107 63.158 0.00 0.00 0.00 3.85
310 311 0.672401 TTCCTTCGAACGTGCCATCC 60.672 55.000 0.00 0.00 0.00 3.51
311 312 0.442699 GTTCCTTCGAACGTGCCATC 59.557 55.000 0.00 0.00 39.14 3.51
312 313 2.540145 GTTCCTTCGAACGTGCCAT 58.460 52.632 0.00 0.00 39.14 4.40
313 314 4.036977 GTTCCTTCGAACGTGCCA 57.963 55.556 0.00 0.00 39.14 4.92
319 320 0.533531 ACAACCCCGTTCCTTCGAAC 60.534 55.000 0.00 0.00 44.24 3.95
320 321 0.533308 CACAACCCCGTTCCTTCGAA 60.533 55.000 0.00 0.00 0.00 3.71
321 322 1.070105 CACAACCCCGTTCCTTCGA 59.930 57.895 0.00 0.00 0.00 3.71
322 323 1.964373 CCACAACCCCGTTCCTTCG 60.964 63.158 0.00 0.00 0.00 3.79
323 324 2.265904 GCCACAACCCCGTTCCTTC 61.266 63.158 0.00 0.00 0.00 3.46
324 325 2.203437 GCCACAACCCCGTTCCTT 60.203 61.111 0.00 0.00 0.00 3.36
325 326 4.636435 CGCCACAACCCCGTTCCT 62.636 66.667 0.00 0.00 0.00 3.36
326 327 4.941309 ACGCCACAACCCCGTTCC 62.941 66.667 0.00 0.00 0.00 3.62
327 328 3.656045 CACGCCACAACCCCGTTC 61.656 66.667 0.00 0.00 32.18 3.95
332 333 3.322706 GATTCGCACGCCACAACCC 62.323 63.158 0.00 0.00 0.00 4.11
333 334 2.175811 GATTCGCACGCCACAACC 59.824 61.111 0.00 0.00 0.00 3.77
334 335 2.202171 CGATTCGCACGCCACAAC 60.202 61.111 0.00 0.00 0.00 3.32
335 336 3.418913 CCGATTCGCACGCCACAA 61.419 61.111 0.00 0.00 0.00 3.33
336 337 4.673298 ACCGATTCGCACGCCACA 62.673 61.111 0.00 0.00 0.00 4.17
337 338 3.849953 GACCGATTCGCACGCCAC 61.850 66.667 0.00 0.00 0.00 5.01
346 347 0.037605 ACAACTGTCCCGACCGATTC 60.038 55.000 0.00 0.00 0.00 2.52
347 348 0.395312 AACAACTGTCCCGACCGATT 59.605 50.000 0.00 0.00 0.00 3.34
348 349 0.320421 CAACAACTGTCCCGACCGAT 60.320 55.000 0.00 0.00 0.00 4.18
349 350 1.068417 CAACAACTGTCCCGACCGA 59.932 57.895 0.00 0.00 0.00 4.69
350 351 2.604174 GCAACAACTGTCCCGACCG 61.604 63.158 0.00 0.00 0.00 4.79
351 352 2.258726 GGCAACAACTGTCCCGACC 61.259 63.158 0.00 0.00 0.00 4.79
352 353 0.818040 AAGGCAACAACTGTCCCGAC 60.818 55.000 0.00 0.00 41.41 4.79
353 354 0.759959 TAAGGCAACAACTGTCCCGA 59.240 50.000 0.00 0.00 41.41 5.14
354 355 0.872388 GTAAGGCAACAACTGTCCCG 59.128 55.000 0.00 0.00 41.41 5.14
355 356 1.880027 CAGTAAGGCAACAACTGTCCC 59.120 52.381 0.00 0.00 43.82 4.46
356 357 2.846193 TCAGTAAGGCAACAACTGTCC 58.154 47.619 7.37 0.00 46.89 4.02
357 358 6.426937 TCTTATTCAGTAAGGCAACAACTGTC 59.573 38.462 7.37 0.00 46.89 3.51
358 359 6.296026 TCTTATTCAGTAAGGCAACAACTGT 58.704 36.000 7.37 0.00 46.89 3.55
360 361 5.940470 CCTCTTATTCAGTAAGGCAACAACT 59.060 40.000 0.00 0.00 40.21 3.16
361 362 5.938125 TCCTCTTATTCAGTAAGGCAACAAC 59.062 40.000 0.00 0.00 40.21 3.32
362 363 6.121776 TCCTCTTATTCAGTAAGGCAACAA 57.878 37.500 0.00 0.00 40.21 2.83
363 364 5.755409 TCCTCTTATTCAGTAAGGCAACA 57.245 39.130 0.00 0.00 40.21 3.33
364 365 6.407202 TCTTCCTCTTATTCAGTAAGGCAAC 58.593 40.000 0.00 0.00 40.21 4.17
365 366 6.440647 TCTCTTCCTCTTATTCAGTAAGGCAA 59.559 38.462 0.00 0.00 40.21 4.52
366 367 5.958380 TCTCTTCCTCTTATTCAGTAAGGCA 59.042 40.000 0.00 0.00 40.21 4.75
367 368 6.472686 TCTCTTCCTCTTATTCAGTAAGGC 57.527 41.667 0.00 0.00 40.21 4.35
368 369 9.157104 GTTTTCTCTTCCTCTTATTCAGTAAGG 57.843 37.037 0.00 0.00 40.21 2.69
369 370 8.865001 CGTTTTCTCTTCCTCTTATTCAGTAAG 58.135 37.037 0.00 0.00 40.99 2.34
370 371 7.817962 CCGTTTTCTCTTCCTCTTATTCAGTAA 59.182 37.037 0.00 0.00 0.00 2.24
371 372 7.177921 TCCGTTTTCTCTTCCTCTTATTCAGTA 59.822 37.037 0.00 0.00 0.00 2.74
372 373 6.014499 TCCGTTTTCTCTTCCTCTTATTCAGT 60.014 38.462 0.00 0.00 0.00 3.41
373 374 6.398918 TCCGTTTTCTCTTCCTCTTATTCAG 58.601 40.000 0.00 0.00 0.00 3.02
374 375 6.354794 TCCGTTTTCTCTTCCTCTTATTCA 57.645 37.500 0.00 0.00 0.00 2.57
375 376 7.668525 TTTCCGTTTTCTCTTCCTCTTATTC 57.331 36.000 0.00 0.00 0.00 1.75
376 377 8.459911 TTTTTCCGTTTTCTCTTCCTCTTATT 57.540 30.769 0.00 0.00 0.00 1.40
377 378 7.308649 GCTTTTTCCGTTTTCTCTTCCTCTTAT 60.309 37.037 0.00 0.00 0.00 1.73
378 379 6.017357 GCTTTTTCCGTTTTCTCTTCCTCTTA 60.017 38.462 0.00 0.00 0.00 2.10
379 380 5.221067 GCTTTTTCCGTTTTCTCTTCCTCTT 60.221 40.000 0.00 0.00 0.00 2.85
380 381 4.276183 GCTTTTTCCGTTTTCTCTTCCTCT 59.724 41.667 0.00 0.00 0.00 3.69
381 382 4.036380 TGCTTTTTCCGTTTTCTCTTCCTC 59.964 41.667 0.00 0.00 0.00 3.71
382 383 3.951680 TGCTTTTTCCGTTTTCTCTTCCT 59.048 39.130 0.00 0.00 0.00 3.36
383 384 4.301637 TGCTTTTTCCGTTTTCTCTTCC 57.698 40.909 0.00 0.00 0.00 3.46
384 385 5.099575 TGTTGCTTTTTCCGTTTTCTCTTC 58.900 37.500 0.00 0.00 0.00 2.87
385 386 5.066968 TGTTGCTTTTTCCGTTTTCTCTT 57.933 34.783 0.00 0.00 0.00 2.85
386 387 4.712122 TGTTGCTTTTTCCGTTTTCTCT 57.288 36.364 0.00 0.00 0.00 3.10
387 388 4.862574 ACTTGTTGCTTTTTCCGTTTTCTC 59.137 37.500 0.00 0.00 0.00 2.87
388 389 4.816392 ACTTGTTGCTTTTTCCGTTTTCT 58.184 34.783 0.00 0.00 0.00 2.52
389 390 5.107259 ACAACTTGTTGCTTTTTCCGTTTTC 60.107 36.000 12.76 0.00 0.00 2.29
390 391 4.752604 ACAACTTGTTGCTTTTTCCGTTTT 59.247 33.333 12.76 0.00 0.00 2.43
391 392 4.151512 CACAACTTGTTGCTTTTTCCGTTT 59.848 37.500 12.76 0.00 0.00 3.60
392 393 3.677596 CACAACTTGTTGCTTTTTCCGTT 59.322 39.130 12.76 0.00 0.00 4.44
393 394 3.249917 CACAACTTGTTGCTTTTTCCGT 58.750 40.909 12.76 0.00 0.00 4.69
394 395 2.029124 GCACAACTTGTTGCTTTTTCCG 59.971 45.455 12.76 0.00 0.00 4.30
395 396 2.029124 CGCACAACTTGTTGCTTTTTCC 59.971 45.455 12.76 0.00 0.00 3.13
396 397 2.534742 GCGCACAACTTGTTGCTTTTTC 60.535 45.455 12.76 0.00 0.00 2.29
397 398 1.393196 GCGCACAACTTGTTGCTTTTT 59.607 42.857 12.76 0.00 0.00 1.94
398 399 0.998669 GCGCACAACTTGTTGCTTTT 59.001 45.000 12.76 0.00 0.00 2.27
399 400 0.173255 AGCGCACAACTTGTTGCTTT 59.827 45.000 11.47 0.00 36.46 3.51
400 401 0.526096 CAGCGCACAACTTGTTGCTT 60.526 50.000 11.47 0.00 37.39 3.91
401 402 1.064621 CAGCGCACAACTTGTTGCT 59.935 52.632 11.47 11.11 39.29 3.91
402 403 2.579574 GCAGCGCACAACTTGTTGC 61.580 57.895 11.47 2.91 31.45 4.17
403 404 2.287965 CGCAGCGCACAACTTGTTG 61.288 57.895 11.47 11.44 0.00 3.33
404 405 2.024588 CGCAGCGCACAACTTGTT 59.975 55.556 11.47 0.00 0.00 2.83
417 418 0.040958 GAGACAGTGGTTTTGCGCAG 60.041 55.000 11.31 0.00 0.00 5.18
418 419 0.463654 AGAGACAGTGGTTTTGCGCA 60.464 50.000 5.66 5.66 0.00 6.09
419 420 0.663153 AAGAGACAGTGGTTTTGCGC 59.337 50.000 0.00 0.00 0.00 6.09
420 421 1.670811 ACAAGAGACAGTGGTTTTGCG 59.329 47.619 0.00 0.00 0.00 4.85
421 422 2.682856 TCACAAGAGACAGTGGTTTTGC 59.317 45.455 0.00 0.00 36.43 3.68
422 423 3.941483 ACTCACAAGAGACAGTGGTTTTG 59.059 43.478 0.00 0.00 44.98 2.44
423 424 4.222124 ACTCACAAGAGACAGTGGTTTT 57.778 40.909 0.00 0.00 44.98 2.43
424 425 3.914426 ACTCACAAGAGACAGTGGTTT 57.086 42.857 0.00 0.00 44.98 3.27
425 426 3.197766 TGAACTCACAAGAGACAGTGGTT 59.802 43.478 0.00 0.00 44.98 3.67
426 427 2.766263 TGAACTCACAAGAGACAGTGGT 59.234 45.455 0.00 0.00 44.98 4.16
427 428 3.459232 TGAACTCACAAGAGACAGTGG 57.541 47.619 0.00 0.00 44.98 4.00
428 429 3.672397 CGATGAACTCACAAGAGACAGTG 59.328 47.826 0.00 0.00 44.98 3.66
429 430 3.570125 TCGATGAACTCACAAGAGACAGT 59.430 43.478 0.00 0.00 44.98 3.55
430 431 4.083057 TCTCGATGAACTCACAAGAGACAG 60.083 45.833 0.00 0.00 44.98 3.51
431 432 3.821033 TCTCGATGAACTCACAAGAGACA 59.179 43.478 0.00 0.45 44.98 3.41
432 433 4.411327 CTCTCGATGAACTCACAAGAGAC 58.589 47.826 0.00 0.00 44.98 3.36
433 434 3.119673 GCTCTCGATGAACTCACAAGAGA 60.120 47.826 14.45 11.77 44.98 3.10
434 435 4.270258 CGCTCTCGATGAACTCACAAGAG 61.270 52.174 9.10 9.10 42.21 2.85
435 436 2.414691 CGCTCTCGATGAACTCACAAGA 60.415 50.000 0.00 0.00 38.10 3.02
436 437 1.916651 CGCTCTCGATGAACTCACAAG 59.083 52.381 0.00 0.00 38.10 3.16
437 438 1.539827 TCGCTCTCGATGAACTCACAA 59.460 47.619 0.00 0.00 40.21 3.33
438 439 1.131315 CTCGCTCTCGATGAACTCACA 59.869 52.381 0.00 0.00 44.56 3.58
439 440 1.398739 TCTCGCTCTCGATGAACTCAC 59.601 52.381 0.00 0.00 44.56 3.51
440 441 1.668237 CTCTCGCTCTCGATGAACTCA 59.332 52.381 0.00 0.00 44.56 3.41
441 442 1.937223 TCTCTCGCTCTCGATGAACTC 59.063 52.381 0.00 0.00 44.56 3.01
442 443 2.031258 TCTCTCGCTCTCGATGAACT 57.969 50.000 0.00 0.00 44.56 3.01
443 444 2.834574 TTCTCTCGCTCTCGATGAAC 57.165 50.000 0.00 0.00 44.56 3.18
444 445 3.010420 TCTTTCTCTCGCTCTCGATGAA 58.990 45.455 0.00 0.00 44.56 2.57
445 446 2.611751 CTCTTTCTCTCGCTCTCGATGA 59.388 50.000 0.00 0.00 44.56 2.92
446 447 2.611751 TCTCTTTCTCTCGCTCTCGATG 59.388 50.000 0.00 0.00 44.56 3.84
447 448 2.872245 CTCTCTTTCTCTCGCTCTCGAT 59.128 50.000 0.00 0.00 44.56 3.59
448 449 2.093921 TCTCTCTTTCTCTCGCTCTCGA 60.094 50.000 0.00 0.00 43.28 4.04
449 450 2.276201 TCTCTCTTTCTCTCGCTCTCG 58.724 52.381 0.00 0.00 0.00 4.04
450 451 3.531538 TCTCTCTCTTTCTCTCGCTCTC 58.468 50.000 0.00 0.00 0.00 3.20
451 452 3.197766 TCTCTCTCTCTTTCTCTCGCTCT 59.802 47.826 0.00 0.00 0.00 4.09
452 453 3.531538 TCTCTCTCTCTTTCTCTCGCTC 58.468 50.000 0.00 0.00 0.00 5.03
453 454 3.197766 TCTCTCTCTCTCTTTCTCTCGCT 59.802 47.826 0.00 0.00 0.00 4.93
454 455 3.531538 TCTCTCTCTCTCTTTCTCTCGC 58.468 50.000 0.00 0.00 0.00 5.03
455 456 4.122776 CCTCTCTCTCTCTCTTTCTCTCG 58.877 52.174 0.00 0.00 0.00 4.04
456 457 4.164221 TCCCTCTCTCTCTCTCTTTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
457 458 4.111577 TCCCTCTCTCTCTCTCTTTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
458 459 4.503714 TCCCTCTCTCTCTCTCTTTCTC 57.496 50.000 0.00 0.00 0.00 2.87
459 460 4.600062 GTTCCCTCTCTCTCTCTCTTTCT 58.400 47.826 0.00 0.00 0.00 2.52
460 461 3.377172 CGTTCCCTCTCTCTCTCTCTTTC 59.623 52.174 0.00 0.00 0.00 2.62
461 462 3.009695 TCGTTCCCTCTCTCTCTCTCTTT 59.990 47.826 0.00 0.00 0.00 2.52
462 463 2.574369 TCGTTCCCTCTCTCTCTCTCTT 59.426 50.000 0.00 0.00 0.00 2.85
463 464 2.170607 CTCGTTCCCTCTCTCTCTCTCT 59.829 54.545 0.00 0.00 0.00 3.10
464 465 2.561569 CTCGTTCCCTCTCTCTCTCTC 58.438 57.143 0.00 0.00 0.00 3.20
465 466 1.408266 GCTCGTTCCCTCTCTCTCTCT 60.408 57.143 0.00 0.00 0.00 3.10
466 467 1.021968 GCTCGTTCCCTCTCTCTCTC 58.978 60.000 0.00 0.00 0.00 3.20
467 468 0.746563 CGCTCGTTCCCTCTCTCTCT 60.747 60.000 0.00 0.00 0.00 3.10
468 469 1.725066 CGCTCGTTCCCTCTCTCTC 59.275 63.158 0.00 0.00 0.00 3.20
469 470 2.411504 GCGCTCGTTCCCTCTCTCT 61.412 63.158 0.00 0.00 0.00 3.10
470 471 2.103340 GCGCTCGTTCCCTCTCTC 59.897 66.667 0.00 0.00 0.00 3.20
471 472 3.816524 CGCGCTCGTTCCCTCTCT 61.817 66.667 5.56 0.00 0.00 3.10
472 473 4.856607 CCGCGCTCGTTCCCTCTC 62.857 72.222 5.56 0.00 0.00 3.20
489 490 3.426568 GTTCTGTCAGGCAGCCGC 61.427 66.667 5.55 0.94 44.66 6.53
490 491 2.743928 GGTTCTGTCAGGCAGCCG 60.744 66.667 5.55 0.83 44.66 5.52
491 492 1.673665 CAGGTTCTGTCAGGCAGCC 60.674 63.158 1.84 1.84 44.66 4.85
492 493 2.331132 GCAGGTTCTGTCAGGCAGC 61.331 63.158 0.00 0.00 44.66 5.25
493 494 0.673022 GAGCAGGTTCTGTCAGGCAG 60.673 60.000 0.00 0.00 46.34 4.85
494 495 1.123861 AGAGCAGGTTCTGTCAGGCA 61.124 55.000 0.00 0.00 33.43 4.75
495 496 0.036022 AAGAGCAGGTTCTGTCAGGC 59.964 55.000 0.00 0.00 33.43 4.85
496 497 1.805869 CAAGAGCAGGTTCTGTCAGG 58.194 55.000 0.00 0.00 33.43 3.86
497 498 1.155042 GCAAGAGCAGGTTCTGTCAG 58.845 55.000 0.00 0.00 41.58 3.51
498 499 0.761187 AGCAAGAGCAGGTTCTGTCA 59.239 50.000 0.00 0.00 45.49 3.58
499 500 2.615869 CTAGCAAGAGCAGGTTCTGTC 58.384 52.381 0.00 0.00 45.49 3.51
500 501 1.277557 CCTAGCAAGAGCAGGTTCTGT 59.722 52.381 0.00 0.00 45.49 3.41
501 502 2.011046 GCCTAGCAAGAGCAGGTTCTG 61.011 57.143 0.00 0.00 45.49 3.02
502 503 0.251634 GCCTAGCAAGAGCAGGTTCT 59.748 55.000 0.00 0.00 45.49 3.01
503 504 0.036010 TGCCTAGCAAGAGCAGGTTC 60.036 55.000 0.00 0.00 45.49 3.62
504 505 0.322008 GTGCCTAGCAAGAGCAGGTT 60.322 55.000 0.00 0.00 45.49 3.50
505 506 1.298014 GTGCCTAGCAAGAGCAGGT 59.702 57.895 0.00 0.00 45.49 4.00
506 507 1.451028 GGTGCCTAGCAAGAGCAGG 60.451 63.158 0.00 0.00 45.49 4.85
507 508 0.743701 CTGGTGCCTAGCAAGAGCAG 60.744 60.000 0.00 0.00 45.49 4.24
508 509 1.297689 CTGGTGCCTAGCAAGAGCA 59.702 57.895 0.00 0.00 45.49 4.26
509 510 1.451028 CCTGGTGCCTAGCAAGAGC 60.451 63.158 0.00 0.00 41.47 4.09
510 511 1.222936 CCCTGGTGCCTAGCAAGAG 59.777 63.158 0.00 0.00 41.47 2.85
511 512 0.840288 TTCCCTGGTGCCTAGCAAGA 60.840 55.000 0.00 0.00 41.47 3.02
512 513 0.038166 TTTCCCTGGTGCCTAGCAAG 59.962 55.000 0.00 0.00 41.47 4.01
513 514 0.480690 TTTTCCCTGGTGCCTAGCAA 59.519 50.000 0.00 0.00 41.47 3.91
514 515 0.704076 ATTTTCCCTGGTGCCTAGCA 59.296 50.000 0.00 0.00 35.60 3.49
515 516 1.393603 GATTTTCCCTGGTGCCTAGC 58.606 55.000 0.00 0.00 0.00 3.42
516 517 1.668419 CGATTTTCCCTGGTGCCTAG 58.332 55.000 0.00 0.00 0.00 3.02
517 518 0.254747 CCGATTTTCCCTGGTGCCTA 59.745 55.000 0.00 0.00 0.00 3.93
518 519 1.000896 CCGATTTTCCCTGGTGCCT 60.001 57.895 0.00 0.00 0.00 4.75
519 520 1.001393 TCCGATTTTCCCTGGTGCC 60.001 57.895 0.00 0.00 0.00 5.01
520 521 1.644786 CGTCCGATTTTCCCTGGTGC 61.645 60.000 0.00 0.00 0.00 5.01
521 522 0.036765 TCGTCCGATTTTCCCTGGTG 60.037 55.000 0.00 0.00 0.00 4.17
522 523 0.249398 CTCGTCCGATTTTCCCTGGT 59.751 55.000 0.00 0.00 0.00 4.00
523 524 0.535335 TCTCGTCCGATTTTCCCTGG 59.465 55.000 0.00 0.00 0.00 4.45
524 525 1.204941 AGTCTCGTCCGATTTTCCCTG 59.795 52.381 0.00 0.00 0.00 4.45
525 526 1.558233 AGTCTCGTCCGATTTTCCCT 58.442 50.000 0.00 0.00 0.00 4.20
526 527 2.000447 CAAGTCTCGTCCGATTTTCCC 59.000 52.381 0.00 0.00 0.00 3.97
527 528 1.393883 GCAAGTCTCGTCCGATTTTCC 59.606 52.381 0.00 0.00 0.00 3.13
528 529 1.393883 GGCAAGTCTCGTCCGATTTTC 59.606 52.381 0.00 0.00 0.00 2.29
529 530 1.002087 AGGCAAGTCTCGTCCGATTTT 59.998 47.619 0.00 0.00 0.00 1.82
530 531 0.608640 AGGCAAGTCTCGTCCGATTT 59.391 50.000 0.00 0.00 0.00 2.17
531 532 0.108615 CAGGCAAGTCTCGTCCGATT 60.109 55.000 0.00 0.00 0.00 3.34
532 533 1.513158 CAGGCAAGTCTCGTCCGAT 59.487 57.895 0.00 0.00 0.00 4.18
533 534 2.962569 CAGGCAAGTCTCGTCCGA 59.037 61.111 0.00 0.00 0.00 4.55
534 535 2.811317 GCAGGCAAGTCTCGTCCG 60.811 66.667 0.00 0.00 0.00 4.79
535 536 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
536 537 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
537 538 2.210013 TGGAGCAGGCAAGTCTCGT 61.210 57.895 0.00 0.00 0.00 4.18
538 539 1.739562 GTGGAGCAGGCAAGTCTCG 60.740 63.158 0.00 0.00 0.00 4.04
539 540 1.376553 GGTGGAGCAGGCAAGTCTC 60.377 63.158 0.00 0.00 0.00 3.36
540 541 2.753029 GGTGGAGCAGGCAAGTCT 59.247 61.111 0.00 0.00 0.00 3.24
541 542 2.743928 CGGTGGAGCAGGCAAGTC 60.744 66.667 0.00 0.00 0.00 3.01
542 543 4.335647 CCGGTGGAGCAGGCAAGT 62.336 66.667 0.00 0.00 0.00 3.16
561 562 2.672996 AAGCACGGATGGGCACAC 60.673 61.111 0.00 0.00 0.00 3.82
562 563 2.359850 GAAGCACGGATGGGCACA 60.360 61.111 0.00 0.00 0.00 4.57
563 564 3.134127 GGAAGCACGGATGGGCAC 61.134 66.667 0.00 0.00 0.00 5.01
564 565 4.776322 CGGAAGCACGGATGGGCA 62.776 66.667 0.00 0.00 0.00 5.36
576 577 2.431942 AAGCCACGTACGCGGAAG 60.432 61.111 25.84 6.98 43.45 3.46
577 578 2.495366 ATCAAGCCACGTACGCGGAA 62.495 55.000 25.84 7.91 43.45 4.30
578 579 2.495366 AATCAAGCCACGTACGCGGA 62.495 55.000 25.84 0.00 43.45 5.54
579 580 1.632046 AAATCAAGCCACGTACGCGG 61.632 55.000 17.94 17.94 43.45 6.46
580 581 0.518355 CAAATCAAGCCACGTACGCG 60.518 55.000 16.72 3.53 44.93 6.01
581 582 0.793861 TCAAATCAAGCCACGTACGC 59.206 50.000 16.72 0.00 0.00 4.42
582 583 3.740044 AATCAAATCAAGCCACGTACG 57.260 42.857 15.01 15.01 0.00 3.67
583 584 6.128391 TGTTCTAATCAAATCAAGCCACGTAC 60.128 38.462 0.00 0.00 0.00 3.67
584 585 5.935206 TGTTCTAATCAAATCAAGCCACGTA 59.065 36.000 0.00 0.00 0.00 3.57
585 586 4.759693 TGTTCTAATCAAATCAAGCCACGT 59.240 37.500 0.00 0.00 0.00 4.49
586 587 5.295431 TGTTCTAATCAAATCAAGCCACG 57.705 39.130 0.00 0.00 0.00 4.94
587 588 7.945033 TTTTGTTCTAATCAAATCAAGCCAC 57.055 32.000 0.00 0.00 35.25 5.01
592 593 9.651913 GGCCTTATTTTGTTCTAATCAAATCAA 57.348 29.630 0.00 0.00 35.25 2.57
593 594 9.034800 AGGCCTTATTTTGTTCTAATCAAATCA 57.965 29.630 0.00 0.00 35.25 2.57
594 595 9.305925 CAGGCCTTATTTTGTTCTAATCAAATC 57.694 33.333 0.00 0.00 35.25 2.17
595 596 9.034800 TCAGGCCTTATTTTGTTCTAATCAAAT 57.965 29.630 0.00 0.00 35.25 2.32
596 597 8.303876 GTCAGGCCTTATTTTGTTCTAATCAAA 58.696 33.333 0.00 0.00 33.76 2.69
597 598 7.093945 GGTCAGGCCTTATTTTGTTCTAATCAA 60.094 37.037 0.00 0.00 0.00 2.57
598 599 6.377146 GGTCAGGCCTTATTTTGTTCTAATCA 59.623 38.462 0.00 0.00 0.00 2.57
599 600 6.183360 GGGTCAGGCCTTATTTTGTTCTAATC 60.183 42.308 0.00 0.00 37.43 1.75
600 601 5.656859 GGGTCAGGCCTTATTTTGTTCTAAT 59.343 40.000 0.00 0.00 37.43 1.73
601 602 5.014202 GGGTCAGGCCTTATTTTGTTCTAA 58.986 41.667 0.00 0.00 37.43 2.10
602 603 4.569015 GGGGTCAGGCCTTATTTTGTTCTA 60.569 45.833 0.00 0.00 37.43 2.10
603 604 3.431415 GGGTCAGGCCTTATTTTGTTCT 58.569 45.455 0.00 0.00 37.43 3.01
604 605 2.496070 GGGGTCAGGCCTTATTTTGTTC 59.504 50.000 0.00 0.00 37.43 3.18
605 606 2.536066 GGGGTCAGGCCTTATTTTGTT 58.464 47.619 0.00 0.00 37.43 2.83
606 607 1.615919 CGGGGTCAGGCCTTATTTTGT 60.616 52.381 0.00 0.00 37.43 2.83
607 608 1.102978 CGGGGTCAGGCCTTATTTTG 58.897 55.000 0.00 0.00 37.43 2.44
608 609 0.683179 GCGGGGTCAGGCCTTATTTT 60.683 55.000 0.00 0.00 37.43 1.82
609 610 1.076995 GCGGGGTCAGGCCTTATTT 60.077 57.895 0.00 0.00 37.43 1.40
610 611 2.595655 GCGGGGTCAGGCCTTATT 59.404 61.111 0.00 0.00 37.43 1.40
611 612 3.489513 GGCGGGGTCAGGCCTTAT 61.490 66.667 0.00 0.00 45.93 1.73
618 619 2.144859 TTTTAAGGGGGCGGGGTCAG 62.145 60.000 0.00 0.00 0.00 3.51
619 620 1.511316 ATTTTAAGGGGGCGGGGTCA 61.511 55.000 0.00 0.00 0.00 4.02
620 621 0.754217 GATTTTAAGGGGGCGGGGTC 60.754 60.000 0.00 0.00 0.00 4.46
621 622 1.308666 GATTTTAAGGGGGCGGGGT 59.691 57.895 0.00 0.00 0.00 4.95
622 623 0.755327 CTGATTTTAAGGGGGCGGGG 60.755 60.000 0.00 0.00 0.00 5.73
623 624 0.755327 CCTGATTTTAAGGGGGCGGG 60.755 60.000 0.00 0.00 0.00 6.13
624 625 2.807247 CCTGATTTTAAGGGGGCGG 58.193 57.895 0.00 0.00 0.00 6.13
637 638 8.748179 TCTTTCTAATCTAATCATCCCCTGAT 57.252 34.615 0.00 0.00 46.87 2.90
638 639 8.567198 TTCTTTCTAATCTAATCATCCCCTGA 57.433 34.615 0.00 0.00 38.53 3.86
639 640 9.632638 TTTTCTTTCTAATCTAATCATCCCCTG 57.367 33.333 0.00 0.00 0.00 4.45
666 667 7.569240 TCCCACTTCATTTTATGGTTGTTTTT 58.431 30.769 0.00 0.00 0.00 1.94
667 668 7.130681 TCCCACTTCATTTTATGGTTGTTTT 57.869 32.000 0.00 0.00 0.00 2.43
668 669 6.739331 TCCCACTTCATTTTATGGTTGTTT 57.261 33.333 0.00 0.00 0.00 2.83
669 670 5.279456 GCTCCCACTTCATTTTATGGTTGTT 60.279 40.000 0.00 0.00 0.00 2.83
670 671 4.220602 GCTCCCACTTCATTTTATGGTTGT 59.779 41.667 0.00 0.00 0.00 3.32
671 672 4.220382 TGCTCCCACTTCATTTTATGGTTG 59.780 41.667 0.00 0.00 0.00 3.77
672 673 4.220602 GTGCTCCCACTTCATTTTATGGTT 59.779 41.667 0.00 0.00 38.93 3.67
673 674 3.763897 GTGCTCCCACTTCATTTTATGGT 59.236 43.478 0.00 0.00 38.93 3.55
674 675 3.131046 GGTGCTCCCACTTCATTTTATGG 59.869 47.826 0.00 0.00 41.75 2.74
675 676 3.181497 CGGTGCTCCCACTTCATTTTATG 60.181 47.826 0.00 0.00 41.75 1.90
676 677 3.016736 CGGTGCTCCCACTTCATTTTAT 58.983 45.455 0.00 0.00 41.75 1.40
677 678 2.039216 TCGGTGCTCCCACTTCATTTTA 59.961 45.455 0.00 0.00 41.75 1.52
678 679 1.202879 TCGGTGCTCCCACTTCATTTT 60.203 47.619 0.00 0.00 41.75 1.82
679 680 0.400213 TCGGTGCTCCCACTTCATTT 59.600 50.000 0.00 0.00 41.75 2.32
680 681 0.620556 ATCGGTGCTCCCACTTCATT 59.379 50.000 0.00 0.00 41.75 2.57
681 682 0.107508 CATCGGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 41.75 2.57
682 683 1.296392 CATCGGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 41.75 3.02
683 684 1.450312 CCATCGGTGCTCCCACTTC 60.450 63.158 0.00 0.00 41.75 3.01
684 685 1.488705 TTCCATCGGTGCTCCCACTT 61.489 55.000 0.00 0.00 41.75 3.16
685 686 1.903877 CTTCCATCGGTGCTCCCACT 61.904 60.000 0.00 0.00 41.75 4.00
686 687 1.450312 CTTCCATCGGTGCTCCCAC 60.450 63.158 0.00 0.00 41.32 4.61
687 688 2.989639 CTTCCATCGGTGCTCCCA 59.010 61.111 0.00 0.00 0.00 4.37
688 689 2.514824 GCTTCCATCGGTGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
689 690 0.106708 TATGCTTCCATCGGTGCTCC 59.893 55.000 0.00 0.00 32.85 4.70
690 691 1.869767 CTTATGCTTCCATCGGTGCTC 59.130 52.381 0.00 0.00 32.85 4.26
691 692 1.475751 CCTTATGCTTCCATCGGTGCT 60.476 52.381 0.00 0.00 32.85 4.40
692 693 0.947244 CCTTATGCTTCCATCGGTGC 59.053 55.000 0.00 0.00 32.85 5.01
693 694 2.487934 CTCCTTATGCTTCCATCGGTG 58.512 52.381 0.00 0.00 32.85 4.94
694 695 1.417890 CCTCCTTATGCTTCCATCGGT 59.582 52.381 0.00 0.00 32.85 4.69
695 696 1.271054 CCCTCCTTATGCTTCCATCGG 60.271 57.143 0.00 0.00 32.85 4.18
696 697 1.694150 TCCCTCCTTATGCTTCCATCG 59.306 52.381 0.00 0.00 32.85 3.84
697 698 2.551938 GCTCCCTCCTTATGCTTCCATC 60.552 54.545 0.00 0.00 32.85 3.51
698 699 1.423161 GCTCCCTCCTTATGCTTCCAT 59.577 52.381 0.00 0.00 35.44 3.41
699 700 0.839946 GCTCCCTCCTTATGCTTCCA 59.160 55.000 0.00 0.00 0.00 3.53
700 701 0.839946 TGCTCCCTCCTTATGCTTCC 59.160 55.000 0.00 0.00 0.00 3.46
701 702 1.202746 CCTGCTCCCTCCTTATGCTTC 60.203 57.143 0.00 0.00 0.00 3.86
702 703 0.842635 CCTGCTCCCTCCTTATGCTT 59.157 55.000 0.00 0.00 0.00 3.91
703 704 1.704007 GCCTGCTCCCTCCTTATGCT 61.704 60.000 0.00 0.00 0.00 3.79
704 705 1.228094 GCCTGCTCCCTCCTTATGC 60.228 63.158 0.00 0.00 0.00 3.14
705 706 0.548031 TTGCCTGCTCCCTCCTTATG 59.452 55.000 0.00 0.00 0.00 1.90
706 707 0.842635 CTTGCCTGCTCCCTCCTTAT 59.157 55.000 0.00 0.00 0.00 1.73
707 708 1.915078 GCTTGCCTGCTCCCTCCTTA 61.915 60.000 0.00 0.00 0.00 2.69
708 709 3.085223 CTTGCCTGCTCCCTCCTT 58.915 61.111 0.00 0.00 0.00 3.36
709 710 3.726144 GCTTGCCTGCTCCCTCCT 61.726 66.667 0.00 0.00 0.00 3.69
710 711 4.811364 GGCTTGCCTGCTCCCTCC 62.811 72.222 4.11 0.00 0.00 4.30
718 719 4.729918 AAGAGCCCGGCTTGCCTG 62.730 66.667 14.70 2.99 39.88 4.85
719 720 4.416738 GAAGAGCCCGGCTTGCCT 62.417 66.667 14.70 2.98 39.88 4.75
720 721 4.416738 AGAAGAGCCCGGCTTGCC 62.417 66.667 14.70 5.60 39.88 4.52
721 722 1.961180 TAGAGAAGAGCCCGGCTTGC 61.961 60.000 14.70 6.20 39.88 4.01
722 723 0.103937 CTAGAGAAGAGCCCGGCTTG 59.896 60.000 14.70 0.00 39.88 4.01
723 724 1.681486 GCTAGAGAAGAGCCCGGCTT 61.681 60.000 14.70 0.00 39.88 4.35
724 725 2.131067 GCTAGAGAAGAGCCCGGCT 61.131 63.158 13.16 13.16 43.88 5.52
725 726 2.419620 GCTAGAGAAGAGCCCGGC 59.580 66.667 0.00 0.00 33.60 6.13
735 736 4.141937 ACGCAATATTCAAGTGGCTAGAGA 60.142 41.667 0.00 0.00 0.00 3.10
742 743 2.030457 GTCGGACGCAATATTCAAGTGG 59.970 50.000 0.00 0.00 0.00 4.00
781 782 0.108186 TGGCGAGCAACTGTGATAGG 60.108 55.000 0.00 0.00 0.00 2.57
783 784 2.401583 AATGGCGAGCAACTGTGATA 57.598 45.000 0.00 0.00 0.00 2.15
793 799 2.076863 ACTGTAGTCAAAATGGCGAGC 58.923 47.619 0.00 0.00 0.00 5.03
811 817 4.127171 CACAGTGCTGGTTTACAAGTACT 58.873 43.478 2.56 2.56 34.19 2.73
812 818 3.303791 GCACAGTGCTGGTTTACAAGTAC 60.304 47.826 18.92 0.00 40.96 2.73
813 819 2.875933 GCACAGTGCTGGTTTACAAGTA 59.124 45.455 18.92 0.00 40.96 2.24
814 820 1.676006 GCACAGTGCTGGTTTACAAGT 59.324 47.619 18.92 0.00 40.96 3.16
815 821 1.334059 CGCACAGTGCTGGTTTACAAG 60.334 52.381 23.15 0.00 42.25 3.16
816 822 0.660488 CGCACAGTGCTGGTTTACAA 59.340 50.000 23.15 0.00 42.25 2.41
892 903 3.069158 TGGGTAGTCTTTCTTATAGGCGC 59.931 47.826 0.00 0.00 0.00 6.53
893 904 4.931661 TGGGTAGTCTTTCTTATAGGCG 57.068 45.455 0.00 0.00 0.00 5.52
894 905 5.821470 GGTTTGGGTAGTCTTTCTTATAGGC 59.179 44.000 0.00 0.00 0.00 3.93
895 906 7.196637 AGGTTTGGGTAGTCTTTCTTATAGG 57.803 40.000 0.00 0.00 0.00 2.57
896 907 9.516546 AAAAGGTTTGGGTAGTCTTTCTTATAG 57.483 33.333 0.00 0.00 0.00 1.31
1467 1493 2.904319 TCAAGTAATCGTTCGTTCGACG 59.096 45.455 6.81 3.10 42.56 5.12
1468 1494 4.614284 TCTTCAAGTAATCGTTCGTTCGAC 59.386 41.667 6.81 0.00 42.56 4.20
1621 1688 2.899838 GTGCAGGGCGTGTTGTGA 60.900 61.111 9.16 0.00 0.00 3.58
2073 3067 1.768275 TGACCACTGACCAGAACATGT 59.232 47.619 3.76 0.00 0.00 3.21
2075 3069 2.439507 AGTTGACCACTGACCAGAACAT 59.560 45.455 3.76 0.00 32.83 2.71
2078 3072 2.398588 AGAGTTGACCACTGACCAGAA 58.601 47.619 3.76 0.00 35.01 3.02
2080 3086 2.874701 CAAAGAGTTGACCACTGACCAG 59.125 50.000 0.00 0.00 35.01 4.00
2124 3171 9.725019 CAGCCATCAGATAACAGGTTAATAATA 57.275 33.333 0.00 0.00 0.00 0.98
2163 3213 2.825836 GCCATTGGACCTGCGGAG 60.826 66.667 6.95 0.00 0.00 4.63
2228 3281 8.157476 AGAACTTGAGGTACAATACAAACAGAT 58.843 33.333 0.00 0.00 37.88 2.90
2232 3285 7.724305 TCAGAACTTGAGGTACAATACAAAC 57.276 36.000 0.00 0.00 37.88 2.93
2233 3286 7.227910 GGTTCAGAACTTGAGGTACAATACAAA 59.772 37.037 13.13 0.00 37.07 2.83
2234 3287 6.708949 GGTTCAGAACTTGAGGTACAATACAA 59.291 38.462 13.13 0.00 37.07 2.41
2236 3289 6.228258 TGGTTCAGAACTTGAGGTACAATAC 58.772 40.000 13.13 0.00 37.07 1.89
2237 3290 6.428083 TGGTTCAGAACTTGAGGTACAATA 57.572 37.500 13.13 0.00 37.07 1.90
2238 3291 5.304686 TGGTTCAGAACTTGAGGTACAAT 57.695 39.130 13.13 0.00 37.07 2.71
2240 3293 4.764050 TTGGTTCAGAACTTGAGGTACA 57.236 40.909 13.13 0.00 37.07 2.90
2241 3294 6.445357 TTTTTGGTTCAGAACTTGAGGTAC 57.555 37.500 13.13 0.00 37.07 3.34
2261 3314 6.931840 ACAACCATAATGGCGTGTTAATTTTT 59.068 30.769 0.00 0.00 42.67 1.94
2262 3315 6.459923 ACAACCATAATGGCGTGTTAATTTT 58.540 32.000 0.00 0.00 42.67 1.82
2263 3316 6.031751 ACAACCATAATGGCGTGTTAATTT 57.968 33.333 0.00 0.00 42.67 1.82
2265 3318 4.947388 AGACAACCATAATGGCGTGTTAAT 59.053 37.500 0.00 0.00 42.67 1.40
2266 3319 4.328536 AGACAACCATAATGGCGTGTTAA 58.671 39.130 0.00 0.00 42.67 2.01
2267 3320 3.945346 AGACAACCATAATGGCGTGTTA 58.055 40.909 0.00 0.00 42.67 2.41
2269 3322 2.489938 AGACAACCATAATGGCGTGT 57.510 45.000 0.00 0.00 42.67 4.49
2271 3324 5.189928 TCAATAAGACAACCATAATGGCGT 58.810 37.500 0.00 0.00 42.67 5.68
2272 3325 5.749596 TCAATAAGACAACCATAATGGCG 57.250 39.130 0.00 0.00 42.67 5.69
2279 3332 9.995003 TTTATTTTTGCTCAATAAGACAACCAT 57.005 25.926 0.00 0.00 29.79 3.55
2282 3335 9.176181 TCGTTTATTTTTGCTCAATAAGACAAC 57.824 29.630 0.00 0.00 29.79 3.32
2286 3339 9.393249 CACTTCGTTTATTTTTGCTCAATAAGA 57.607 29.630 0.00 0.00 29.79 2.10
2323 3377 1.948721 GCACAATTAGGCCCTGCACC 61.949 60.000 0.00 0.00 0.00 5.01
2324 3378 0.967380 AGCACAATTAGGCCCTGCAC 60.967 55.000 0.00 0.00 0.00 4.57
2356 3410 0.389948 GGATGTCGTTCGTCAGGCTT 60.390 55.000 0.00 0.00 34.01 4.35
2449 3503 3.114809 CAAAACTCGAAAACTGCATGCA 58.885 40.909 21.29 21.29 0.00 3.96
2453 3507 2.750166 TGGTCAAAACTCGAAAACTGCA 59.250 40.909 0.00 0.00 0.00 4.41
2462 3516 6.079763 CACATATTTGTCTGGTCAAAACTCG 58.920 40.000 0.00 0.00 40.05 4.18
2463 3517 6.381801 CCACATATTTGTCTGGTCAAAACTC 58.618 40.000 0.00 0.00 40.05 3.01
2472 3526 2.083774 ACGTGCCACATATTTGTCTGG 58.916 47.619 0.00 0.00 32.34 3.86
2482 3536 1.962822 CAGTGAGCACGTGCCACAT 60.963 57.895 38.96 28.74 41.46 3.21
2486 3540 0.179073 ATATCCAGTGAGCACGTGCC 60.179 55.000 35.51 26.08 43.38 5.01
2492 3546 3.305608 CGATACAGCATATCCAGTGAGCA 60.306 47.826 0.00 0.00 0.00 4.26
2507 3561 7.363431 TGATCTGCATTAGTAAGACGATACAG 58.637 38.462 0.00 0.00 0.00 2.74
2508 3562 7.272037 TGATCTGCATTAGTAAGACGATACA 57.728 36.000 0.00 0.00 0.00 2.29
2515 3569 7.157347 GGTCATCATGATCTGCATTAGTAAGA 58.843 38.462 4.86 0.00 34.15 2.10
2540 3598 3.135348 TGGGGATTATGAAGAGCAGAGTG 59.865 47.826 0.00 0.00 0.00 3.51
2858 3916 2.993008 GGGACCATGAGCAGCAGA 59.007 61.111 0.00 0.00 0.00 4.26
3029 4087 6.958192 AGTTAACTTGGATACCTAGAGTTGGA 59.042 38.462 1.12 0.00 33.13 3.53
3065 4123 4.415881 TGGTCAGTGTTAATGTCAGTGT 57.584 40.909 0.00 0.00 37.47 3.55
3116 4174 3.698289 AGTAGTAAGTACAGGAGCAGCA 58.302 45.455 0.00 0.00 33.55 4.41
3146 4204 5.039333 CCTGCACAAGACAAAGAGAAAAAG 58.961 41.667 0.00 0.00 0.00 2.27
3260 4320 2.310538 CCTGTTCTTTCCAGGCAAAGT 58.689 47.619 9.79 0.00 42.81 2.66
3330 4390 5.872963 TCCTACTACACAGTCTGTTGTCTA 58.127 41.667 1.67 0.00 39.29 2.59
3341 4401 6.698380 ACAACCTAAACATCCTACTACACAG 58.302 40.000 0.00 0.00 0.00 3.66
3343 4403 7.834803 AGTACAACCTAAACATCCTACTACAC 58.165 38.462 0.00 0.00 0.00 2.90
3346 4406 9.925545 TGATAGTACAACCTAAACATCCTACTA 57.074 33.333 0.00 0.00 0.00 1.82
3375 4435 9.582431 CACTTATTTTGAGACGAAGGAGTATTA 57.418 33.333 0.00 0.00 0.00 0.98
3377 4437 7.612677 ACACTTATTTTGAGACGAAGGAGTAT 58.387 34.615 0.00 0.00 0.00 2.12
3384 4444 7.494625 AGTTTGAGACACTTATTTTGAGACGAA 59.505 33.333 0.00 0.00 0.00 3.85
3423 4484 7.633193 TGCGTCCCAAAATAAATGTTAGTAT 57.367 32.000 0.00 0.00 0.00 2.12
3426 4487 5.804979 CCTTGCGTCCCAAAATAAATGTTAG 59.195 40.000 0.00 0.00 31.94 2.34
3430 4491 4.423732 CTCCTTGCGTCCCAAAATAAATG 58.576 43.478 0.00 0.00 31.94 2.32
3446 4531 6.691508 TGCTATACATAGTGTATGCTCCTTG 58.308 40.000 11.74 0.00 42.93 3.61
3453 4538 8.607441 ATGGTGTTTGCTATACATAGTGTATG 57.393 34.615 11.74 4.71 42.93 2.39
3516 4610 1.341383 GGCAATGTGGAGTCCCAATCT 60.341 52.381 6.74 0.00 45.59 2.40
3523 4617 2.119801 ACATGAGGCAATGTGGAGTC 57.880 50.000 0.00 0.00 39.32 3.36
3534 4630 1.806542 CAGTGTACAACCACATGAGGC 59.193 52.381 9.34 0.00 37.82 4.70
3553 4649 1.963855 CGTGCGTGGGATTGGAACA 60.964 57.895 0.00 0.00 0.00 3.18
3581 4677 3.573538 CCTCTCTGAGGTGATCCATACAG 59.426 52.174 4.59 0.00 44.25 2.74
3596 4693 0.396417 ACATCTCCGACCCCTCTCTG 60.396 60.000 0.00 0.00 0.00 3.35
3597 4694 0.396417 CACATCTCCGACCCCTCTCT 60.396 60.000 0.00 0.00 0.00 3.10
3628 4725 5.198965 CCATCCAAGGACATCTGAGAAATT 58.801 41.667 0.00 0.00 0.00 1.82
3635 4732 1.409241 CCACCCATCCAAGGACATCTG 60.409 57.143 0.00 0.00 0.00 2.90
3693 4790 9.657419 AAGAAAGAACAACAACAGAAAATCATT 57.343 25.926 0.00 0.00 0.00 2.57
3737 4834 0.804989 CAAAGCGGGACATTCCTCAC 59.195 55.000 0.00 0.00 36.57 3.51
3738 4835 0.960364 GCAAAGCGGGACATTCCTCA 60.960 55.000 0.00 0.00 36.57 3.86
3743 4840 3.061848 CGGGCAAAGCGGGACATT 61.062 61.111 0.00 0.00 0.00 2.71
3785 4882 4.338795 TGGAAGAGAACTAGGATCCAGT 57.661 45.455 15.82 12.42 33.30 4.00
3786 4883 4.283212 GGATGGAAGAGAACTAGGATCCAG 59.717 50.000 15.82 11.76 40.06 3.86
3787 4884 4.227197 GGATGGAAGAGAACTAGGATCCA 58.773 47.826 15.82 0.00 40.90 3.41
3809 4909 1.270839 CCACTATATGTGCCCCTTCCG 60.271 57.143 0.00 0.00 44.92 4.30
3913 5014 1.304713 CATGCTGCTCCCCCACTTT 60.305 57.895 0.00 0.00 0.00 2.66
4091 5201 4.273969 CACACCCTAACACACGTGTAAAAT 59.726 41.667 22.90 10.17 44.13 1.82
4097 5207 0.531974 AGCACACCCTAACACACGTG 60.532 55.000 15.48 15.48 0.00 4.49
4098 5208 0.179468 AAGCACACCCTAACACACGT 59.821 50.000 0.00 0.00 0.00 4.49
4119 5229 9.106070 GACATAATACAAAGTTCTTAACCCGAT 57.894 33.333 0.00 0.00 0.00 4.18
4184 5294 2.595463 TGCAGCTGGTCTGGCAAC 60.595 61.111 17.12 0.00 43.06 4.17
4185 5295 2.281970 CTGCAGCTGGTCTGGCAA 60.282 61.111 17.12 0.00 43.06 4.52
4186 5296 3.563224 ACTGCAGCTGGTCTGGCA 61.563 61.111 17.12 4.78 43.06 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.