Multiple sequence alignment - TraesCS3A01G183600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G183600 chr3A 100.000 6764 0 0 1 6764 212774985 212768222 0.000000e+00 12491.0
1 TraesCS3A01G183600 chr3B 94.037 5903 258 43 1 5846 252869241 252863376 0.000000e+00 8865.0
2 TraesCS3A01G183600 chr3B 94.368 657 31 6 5839 6492 252857340 252856687 0.000000e+00 1003.0
3 TraesCS3A01G183600 chr3B 85.714 238 7 12 6494 6731 252856482 252856272 6.830000e-55 226.0
4 TraesCS3A01G183600 chr3D 93.310 5889 280 47 1 5831 174081790 174075958 0.000000e+00 8588.0
5 TraesCS3A01G183600 chr3D 93.884 654 28 6 5843 6492 174075815 174075170 0.000000e+00 976.0
6 TraesCS3A01G183600 chr3D 92.887 239 14 3 6494 6731 174074985 174074749 1.810000e-90 344.0
7 TraesCS3A01G183600 chrUn 93.884 654 28 6 5843 6492 220585847 220585202 0.000000e+00 976.0
8 TraesCS3A01G183600 chrUn 94.660 412 14 4 5421 5831 220586394 220585990 3.440000e-177 632.0
9 TraesCS3A01G183600 chrUn 92.887 239 14 3 6494 6731 220585017 220584781 1.810000e-90 344.0
10 TraesCS3A01G183600 chr7D 92.442 172 8 3 4851 5022 500775622 500775456 2.440000e-59 241.0
11 TraesCS3A01G183600 chr2A 91.160 181 10 4 4851 5031 184561319 184561145 2.440000e-59 241.0
12 TraesCS3A01G183600 chr2D 91.860 172 10 2 4851 5022 387193861 387193694 3.150000e-58 237.0
13 TraesCS3A01G183600 chr5A 90.449 178 11 4 4844 5021 653299611 653299440 5.280000e-56 230.0
14 TraesCS3A01G183600 chr5D 90.395 177 12 2 4845 5021 461072592 461072763 1.900000e-55 228.0
15 TraesCS3A01G183600 chr1B 89.130 184 10 6 4843 5026 67537433 67537606 3.180000e-53 220.0
16 TraesCS3A01G183600 chr5B 86.869 198 17 7 4854 5051 536228706 536228894 5.310000e-51 213.0
17 TraesCS3A01G183600 chr2B 93.548 62 4 0 1894 1955 62444522 62444583 7.220000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G183600 chr3A 212768222 212774985 6763 True 12491.000000 12491 100.000000 1 6764 1 chr3A.!!$R1 6763
1 TraesCS3A01G183600 chr3B 252863376 252869241 5865 True 8865.000000 8865 94.037000 1 5846 1 chr3B.!!$R1 5845
2 TraesCS3A01G183600 chr3B 252856272 252857340 1068 True 614.500000 1003 90.041000 5839 6731 2 chr3B.!!$R2 892
3 TraesCS3A01G183600 chr3D 174074749 174081790 7041 True 3302.666667 8588 93.360333 1 6731 3 chr3D.!!$R1 6730
4 TraesCS3A01G183600 chrUn 220584781 220586394 1613 True 650.666667 976 93.810333 5421 6731 3 chrUn.!!$R1 1310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 982 0.529555 ACGCCCATGTTTTGTGCAAC 60.530 50.000 0.00 0.0 37.35 4.17 F
1635 1651 0.540133 TCATTTCTGCTTGCCTGCCA 60.540 50.000 0.00 0.0 0.00 4.92 F
2582 2605 1.202533 CGAGGGGATGCTTCATTACGT 60.203 52.381 1.64 0.0 0.00 3.57 F
3017 3050 1.091537 GATCTCTATCGAGGAGCCCG 58.908 60.000 11.81 0.0 37.86 6.13 F
4429 4473 0.478072 TGGTCATCCCACTGCACTTT 59.522 50.000 0.00 0.0 38.72 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2865 2897 0.957395 AAGAGTGCAGTCCATTGCCG 60.957 55.000 18.04 0.0 43.43 5.69 R
3017 3050 0.909623 ACCATGTACCTGTAGGCACC 59.090 55.000 0.00 0.0 39.32 5.01 R
4056 4100 2.009051 CACCATTCATGCAGTCGCTAA 58.991 47.619 0.00 0.0 39.64 3.09 R
4679 4738 1.115326 AGCCCCTGAACAAAGTTGCC 61.115 55.000 0.00 0.0 0.00 4.52 R
6342 6544 0.606604 ACCCCGAGTACATGACACAC 59.393 55.000 0.00 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.207791 ACTCCCGATTCAGCCATCTT 58.792 50.000 0.00 0.00 0.00 2.40
131 133 1.338020 CTTTCTTGCGGCCTTTCAAGT 59.662 47.619 21.05 0.00 40.27 3.16
132 134 0.667993 TTCTTGCGGCCTTTCAAGTG 59.332 50.000 21.05 5.94 40.27 3.16
275 277 5.564063 CGGGGTTCCACTTTCAAGTTTTATC 60.564 44.000 0.00 0.00 37.08 1.75
277 279 6.294564 GGGGTTCCACTTTCAAGTTTTATCTC 60.295 42.308 0.00 0.00 37.08 2.75
285 287 8.006590 CACTTTCAAGTTTTATCTCTCTTGACG 58.993 37.037 6.05 4.20 43.48 4.35
293 295 2.724977 TCTCTCTTGACGCGATTGTT 57.275 45.000 15.93 0.00 0.00 2.83
307 309 4.271049 CGCGATTGTTTGAACTATGGATCT 59.729 41.667 0.00 0.00 0.00 2.75
315 317 3.473625 TGAACTATGGATCTGCAGCATG 58.526 45.455 9.47 5.05 40.87 4.06
327 329 1.229975 GCAGCATGTTTTGGGTTGGC 61.230 55.000 0.00 0.00 39.31 4.52
352 354 2.224646 GGAGAGCAAGGGGATGGATAAC 60.225 54.545 0.00 0.00 0.00 1.89
355 357 1.777272 AGCAAGGGGATGGATAACCTC 59.223 52.381 0.00 0.00 37.04 3.85
357 359 2.487986 GCAAGGGGATGGATAACCTCAG 60.488 54.545 0.00 0.00 37.04 3.35
390 392 4.504858 AGAAAGAACGGACGCAGATATTT 58.495 39.130 0.00 0.00 0.00 1.40
401 403 6.237279 CGGACGCAGATATTTTGTTCAATTTG 60.237 38.462 0.00 0.00 0.00 2.32
458 460 5.355596 GTGTGGACATAGGAGAAGAGAATG 58.644 45.833 0.00 0.00 0.00 2.67
462 464 5.365025 TGGACATAGGAGAAGAGAATGAAGG 59.635 44.000 0.00 0.00 0.00 3.46
469 471 4.080863 GGAGAAGAGAATGAAGGCCACTTA 60.081 45.833 5.01 0.00 36.97 2.24
470 472 4.837972 AGAAGAGAATGAAGGCCACTTAC 58.162 43.478 5.01 0.00 36.97 2.34
475 477 5.663106 AGAGAATGAAGGCCACTTACATCTA 59.337 40.000 5.01 0.00 36.97 1.98
572 576 3.768406 TGCTTACACAAACAAACTGCAG 58.232 40.909 13.48 13.48 0.00 4.41
573 577 3.192422 TGCTTACACAAACAAACTGCAGT 59.808 39.130 15.25 15.25 0.00 4.40
578 582 5.090652 ACACAAACAAACTGCAGTATACG 57.909 39.130 22.01 11.24 0.00 3.06
584 588 1.861982 AACTGCAGTATACGGGGAGT 58.138 50.000 22.01 15.46 34.52 3.85
590 594 2.594131 CAGTATACGGGGAGTGGATCA 58.406 52.381 0.00 0.00 0.00 2.92
592 596 3.193691 CAGTATACGGGGAGTGGATCATC 59.806 52.174 0.00 0.00 0.00 2.92
600 604 3.575805 GGGAGTGGATCATCTCTCTTCT 58.424 50.000 13.46 0.00 0.00 2.85
605 609 4.079269 AGTGGATCATCTCTCTTCTCCTCA 60.079 45.833 0.00 0.00 0.00 3.86
623 627 7.560368 TCTCCTCAATCTTTTCTTACATCCTC 58.440 38.462 0.00 0.00 0.00 3.71
696 702 5.181748 TCTCCATTCTTCTCTTTTAGCTGC 58.818 41.667 0.00 0.00 0.00 5.25
710 716 2.926778 AGCTGCTGTCTCTGAACTTT 57.073 45.000 0.00 0.00 0.00 2.66
726 732 9.381033 CTCTGAACTTTCATCATATCTGTTTCT 57.619 33.333 0.00 0.00 36.46 2.52
764 771 4.375313 ACAGTTCTCTCTCCCCCATATTT 58.625 43.478 0.00 0.00 0.00 1.40
771 778 3.137176 TCTCTCCCCCATATTTTGAGCTG 59.863 47.826 0.00 0.00 0.00 4.24
779 786 7.069826 TCCCCCATATTTTGAGCTGAAATTTAG 59.930 37.037 0.00 0.00 0.00 1.85
780 787 7.069826 CCCCCATATTTTGAGCTGAAATTTAGA 59.930 37.037 0.00 0.00 0.00 2.10
783 790 9.512435 CCATATTTTGAGCTGAAATTTAGACAG 57.488 33.333 0.00 0.00 35.14 3.51
948 959 5.916318 TCAAATTGACAGCACATCCTTTTT 58.084 33.333 0.00 0.00 0.00 1.94
971 982 0.529555 ACGCCCATGTTTTGTGCAAC 60.530 50.000 0.00 0.00 37.35 4.17
998 1009 2.186826 AGGTTTGAGCACACACGCC 61.187 57.895 0.00 0.00 0.00 5.68
1086 1097 5.980715 GGCTAAAGTCTATCTGAAGTACTGC 59.019 44.000 0.00 0.00 0.00 4.40
1419 1431 5.459505 ACCTGCTACTGTAAGATCCACTAT 58.540 41.667 0.00 0.00 37.43 2.12
1496 1510 1.312371 GGCACATGCACCCGTTACAT 61.312 55.000 6.15 0.00 44.36 2.29
1511 1525 7.876068 CACCCGTTACATGTGTTAATATCCTAT 59.124 37.037 9.11 0.00 0.00 2.57
1617 1633 7.315142 TCATGAGTATGAAAAGCAACCAAATC 58.685 34.615 0.00 0.00 40.26 2.17
1634 1650 0.822164 ATCATTTCTGCTTGCCTGCC 59.178 50.000 0.00 0.00 0.00 4.85
1635 1651 0.540133 TCATTTCTGCTTGCCTGCCA 60.540 50.000 0.00 0.00 0.00 4.92
1678 1694 7.178573 AGAGCTAGTATAGTTATGCTGGATGA 58.821 38.462 5.11 0.00 41.93 2.92
1930 1952 5.506649 GCGAAGGACCTTTGTGTTTCATTTA 60.507 40.000 20.62 0.00 0.00 1.40
1974 1996 4.516698 AGTTGCAGTTGTGATGTAGAAAGG 59.483 41.667 0.00 0.00 0.00 3.11
1996 2018 8.650143 AAGGATGCGTGGGATTAAATAATTAT 57.350 30.769 0.00 0.00 0.00 1.28
2097 2120 6.884280 AGGACACCATTTTCTTAACTCTTG 57.116 37.500 0.00 0.00 0.00 3.02
2112 2135 8.774586 TCTTAACTCTTGTTACTTCAATTCTGC 58.225 33.333 0.00 0.00 38.26 4.26
2237 2260 7.232737 ACCATCTTAAAGTAAAGAAAACTGGGG 59.767 37.037 8.18 0.00 38.90 4.96
2238 2261 7.232737 CCATCTTAAAGTAAAGAAAACTGGGGT 59.767 37.037 0.00 0.00 38.90 4.95
2270 2293 3.617263 GGTGATCACTCCGTAACATTGAC 59.383 47.826 24.50 0.00 0.00 3.18
2299 2322 5.639757 TCATTATGTTTGCAAGGAATCACG 58.360 37.500 0.00 0.00 0.00 4.35
2397 2420 8.844244 ACAATACTTCTATTTCTGGATTCATGC 58.156 33.333 0.00 0.00 0.00 4.06
2401 2424 6.888632 ACTTCTATTTCTGGATTCATGCACTT 59.111 34.615 0.00 0.00 0.00 3.16
2408 2431 4.517832 TCTGGATTCATGCACTTATGATGC 59.482 41.667 0.00 0.00 43.68 3.91
2417 2440 1.260825 CACTTATGATGCAGCTGCTCG 59.739 52.381 36.61 19.93 42.66 5.03
2452 2475 5.303165 AGTAGTTTAGTGTTACCACAAGCC 58.697 41.667 0.00 0.00 44.39 4.35
2459 2482 2.488153 GTGTTACCACAAGCCAGATTCC 59.512 50.000 0.00 0.00 41.44 3.01
2463 2486 1.992557 ACCACAAGCCAGATTCCCTTA 59.007 47.619 0.00 0.00 0.00 2.69
2506 2529 3.454812 TGGCTCCTACCATCTTCCTAAAC 59.545 47.826 0.00 0.00 33.75 2.01
2518 2541 6.553100 CCATCTTCCTAAACTATCCTCTCACT 59.447 42.308 0.00 0.00 0.00 3.41
2521 2544 7.415086 TCTTCCTAAACTATCCTCTCACTTCT 58.585 38.462 0.00 0.00 0.00 2.85
2522 2545 7.340743 TCTTCCTAAACTATCCTCTCACTTCTG 59.659 40.741 0.00 0.00 0.00 3.02
2533 2556 4.221703 CCTCTCACTTCTGTTGGACTACAT 59.778 45.833 0.00 0.00 0.00 2.29
2579 2602 2.503765 TCAACGAGGGGATGCTTCATTA 59.496 45.455 1.64 0.00 0.00 1.90
2582 2605 1.202533 CGAGGGGATGCTTCATTACGT 60.203 52.381 1.64 0.00 0.00 3.57
2641 2664 7.787725 AAAATAATATTCAGTCAGGTCCGAC 57.212 36.000 0.00 5.92 36.08 4.79
2865 2897 9.503427 GTTTGTTTGCTCTATTACATGGAATAC 57.497 33.333 6.25 0.00 0.00 1.89
2905 2938 3.605634 TGATGGTTACTTCGGGATGTTG 58.394 45.455 0.00 0.00 0.00 3.33
2977 3010 3.053320 TCCAGGAGCATCTAACTCTCTGA 60.053 47.826 0.00 0.00 35.88 3.27
3017 3050 1.091537 GATCTCTATCGAGGAGCCCG 58.908 60.000 11.81 0.00 37.86 6.13
3049 3082 4.480537 AGGTACATGGTTGGGGAATAATCA 59.519 41.667 0.00 0.00 0.00 2.57
3079 3112 5.520376 ACAAAAGTTCCTCCACAAATGAG 57.480 39.130 0.00 0.00 0.00 2.90
3083 3116 2.026822 AGTTCCTCCACAAATGAGCGAT 60.027 45.455 0.00 0.00 0.00 4.58
3091 3124 2.743664 CACAAATGAGCGATGAAGGTGA 59.256 45.455 0.00 0.00 0.00 4.02
3093 3126 3.189287 ACAAATGAGCGATGAAGGTGAAC 59.811 43.478 0.00 0.00 0.00 3.18
3119 3152 1.781025 TTGGCGAGTTTGTTCCAGCG 61.781 55.000 0.00 0.00 0.00 5.18
3166 3199 4.993705 AAAATTCCCTCTCAGTGGTACA 57.006 40.909 0.00 0.00 0.00 2.90
3180 3213 7.016153 TCAGTGGTACATTAACTTTGATCCT 57.984 36.000 0.00 0.00 44.52 3.24
3203 3236 8.475639 TCCTGTTGATACTTGTCTATTAAGGTC 58.524 37.037 0.00 0.00 0.00 3.85
3295 3328 5.163364 TGTGTTGCATATTTTGGTTGGAACT 60.163 36.000 7.79 0.00 40.85 3.01
3298 3331 3.323115 TGCATATTTTGGTTGGAACTGCA 59.677 39.130 0.00 0.00 34.98 4.41
3300 3333 2.507339 ATTTTGGTTGGAACTGCACG 57.493 45.000 0.00 0.00 0.00 5.34
3329 3362 7.256048 GGGATGCTTCCAATGAAATTATCATCA 60.256 37.037 19.49 0.00 43.66 3.07
3340 3373 2.602257 TTATCATCACTGTCGGCAGG 57.398 50.000 22.98 10.55 46.62 4.85
3509 3553 4.783621 TCCGAGCCATGGCAGTGC 62.784 66.667 37.18 21.54 44.88 4.40
3653 3697 5.130350 TCTTCTTGTCACCGGAAATTCTTT 58.870 37.500 9.46 0.00 0.00 2.52
3670 3714 9.813446 GAAATTCTTTTCCGATACTTAGTCCTA 57.187 33.333 0.00 0.00 36.09 2.94
3728 3772 7.288810 TGAGGTCATTTGTGAAAGCTAAAAT 57.711 32.000 0.00 0.00 0.00 1.82
3752 3796 4.859326 GTGTCAGTAAAAGGCATGGCACA 61.859 47.826 22.64 11.17 45.30 4.57
4029 4073 5.973565 CACTTCCACTTTTCTCATTTGTCAC 59.026 40.000 0.00 0.00 0.00 3.67
4101 4145 4.154347 GGCCCCGCTGTCTCTGAG 62.154 72.222 0.00 0.00 0.00 3.35
4120 4164 7.568738 TCTCTGAGATGGACCCTATGAAAATTA 59.431 37.037 2.58 0.00 0.00 1.40
4295 4339 2.076863 AGCGGTCTAGTTGTTGATTGC 58.923 47.619 0.00 0.00 0.00 3.56
4392 4436 7.338449 TGGTGTTAAGTTTAGGCATTATCCTTC 59.662 37.037 0.00 0.00 37.66 3.46
4426 4470 0.883833 CTTTGGTCATCCCACTGCAC 59.116 55.000 0.00 0.00 45.19 4.57
4429 4473 0.478072 TGGTCATCCCACTGCACTTT 59.522 50.000 0.00 0.00 38.72 2.66
4456 4500 4.275936 GCGGCACCTCATTATAGTTTGAAT 59.724 41.667 0.00 0.00 0.00 2.57
4506 4550 8.956426 CCTATTTCTCTGACTGGAGAGATATAC 58.044 40.741 8.86 0.00 46.27 1.47
4520 4564 9.045223 TGGAGAGATATACGATGTCAAATTTTG 57.955 33.333 2.59 2.59 0.00 2.44
4582 4626 3.449018 ACAGGAGAGACACTATCGCATTT 59.551 43.478 0.00 0.00 0.00 2.32
4679 4738 4.673441 CTGGTAACTTATCTGACCTGTCG 58.327 47.826 0.00 0.00 32.87 4.35
4785 4844 8.983702 TGTACCTAACTTCATTTGTTTAACCT 57.016 30.769 0.00 0.00 0.00 3.50
4833 4894 6.977213 TGTTTAGTAAAAGATGTCCTTTGGC 58.023 36.000 0.00 0.00 43.90 4.52
4885 4946 8.591072 CCCTCCGTTCCTAAATATATGTCTTTA 58.409 37.037 0.00 0.00 0.00 1.85
4979 5040 7.907389 ACATCCGTATGTAGTCCATATTGAAT 58.093 34.615 0.00 0.00 44.66 2.57
4980 5041 7.819415 ACATCCGTATGTAGTCCATATTGAATG 59.181 37.037 0.00 0.00 44.66 2.67
4981 5042 7.533289 TCCGTATGTAGTCCATATTGAATGA 57.467 36.000 0.00 0.00 38.29 2.57
4982 5043 7.958088 TCCGTATGTAGTCCATATTGAATGAA 58.042 34.615 0.00 0.00 38.29 2.57
4983 5044 8.425703 TCCGTATGTAGTCCATATTGAATGAAA 58.574 33.333 0.00 0.00 38.29 2.69
5062 5123 5.868801 CCTGTAAATTTTCCGACATTGCAAT 59.131 36.000 5.99 5.99 0.00 3.56
5079 5140 3.004629 TGCAATGAACTGTCATGTTCCAC 59.995 43.478 10.66 0.00 44.02 4.02
5145 5210 9.920946 ATATAAAATACAAGGACAGACCATGTT 57.079 29.630 5.11 0.00 46.61 2.71
5252 5318 2.514458 ATAGTTTGGACTGGGCAAGG 57.486 50.000 0.00 0.00 36.60 3.61
5294 5360 2.158842 GCTTGTAGATGCTGGAGGATGT 60.159 50.000 0.00 0.00 0.00 3.06
5347 5413 5.817816 GGACCATTGATTCCTACAGTTACTG 59.182 44.000 11.21 11.21 37.52 2.74
5433 5500 3.554934 ACTGACTTGTTTTCAGATGCCA 58.445 40.909 6.37 0.00 42.81 4.92
5464 5531 9.859427 TTTAGAATCATTATTGAGTTGCCTTTG 57.141 29.630 0.00 0.00 34.73 2.77
5479 5546 4.697514 TGCCTTTGTAGCTATCATCTCAC 58.302 43.478 0.00 0.00 0.00 3.51
5502 5569 3.527507 AAGGCTCCGGATCTATGAGTA 57.472 47.619 3.57 0.00 0.00 2.59
5503 5570 3.080300 AGGCTCCGGATCTATGAGTAG 57.920 52.381 3.57 0.00 0.00 2.57
5538 5605 5.393135 CCACGATGTAGTTGAGTATGACTGT 60.393 44.000 0.00 0.00 0.00 3.55
5563 5630 9.962783 GTGTCTTAGGATCATATACGTTAGTTT 57.037 33.333 0.00 0.00 0.00 2.66
5609 5676 1.192428 AGAATCTGGTCGGTGGTACC 58.808 55.000 4.43 4.43 37.53 3.34
5768 5835 7.128234 ACAATTTGGATAAAGCCTAATGCAT 57.872 32.000 0.00 0.00 44.83 3.96
5771 5838 8.362639 CAATTTGGATAAAGCCTAATGCATAGT 58.637 33.333 0.00 0.00 44.83 2.12
5772 5839 6.882610 TTGGATAAAGCCTAATGCATAGTG 57.117 37.500 0.00 0.00 44.83 2.74
5847 6046 9.836076 TCTCGTCTTTGTCCGTTATATATATTG 57.164 33.333 0.00 0.00 0.00 1.90
5876 6075 2.394930 TTATCGCTTTGCAGTGCCTA 57.605 45.000 13.72 0.00 0.00 3.93
5958 6157 3.821421 AGCCCCTGTACTAGAAAATCG 57.179 47.619 0.00 0.00 0.00 3.34
5985 6184 8.198109 GTGAGCCAGATTGTTAGATACTCTTTA 58.802 37.037 0.00 0.00 0.00 1.85
6005 6204 6.861055 TCTTTACATTTTTGAAACATCTCGCC 59.139 34.615 0.00 0.00 0.00 5.54
6034 6233 5.086104 TCTTGCTTAGAAATAGGAACGCT 57.914 39.130 0.00 0.00 0.00 5.07
6043 6242 1.853963 ATAGGAACGCTGACCTCAGT 58.146 50.000 4.26 0.00 45.45 3.41
6242 6444 2.251600 GCAGAGGCAAGGTTCACAG 58.748 57.895 0.00 0.00 40.72 3.66
6313 6515 6.767902 TGAAATCTGTTAAGGGATAGATGCAC 59.232 38.462 0.00 0.00 30.77 4.57
6314 6516 4.322080 TCTGTTAAGGGATAGATGCACG 57.678 45.455 0.00 0.00 0.00 5.34
6315 6517 3.958147 TCTGTTAAGGGATAGATGCACGA 59.042 43.478 0.00 0.00 0.00 4.35
6342 6544 7.041098 AGTCTGCTGTGTTAGAATACCAAAAAG 60.041 37.037 0.00 0.00 0.00 2.27
6363 6568 0.179145 GTGTCATGTACTCGGGGTCG 60.179 60.000 0.00 0.00 37.82 4.79
6421 6626 9.896645 AGTTCTTCATGCTATCTCTATTTTTGA 57.103 29.630 0.00 0.00 0.00 2.69
6426 6631 9.671279 TTCATGCTATCTCTATTTTTGAAGTGA 57.329 29.630 0.00 0.00 0.00 3.41
6429 6634 7.923888 TGCTATCTCTATTTTTGAAGTGATGC 58.076 34.615 0.00 0.00 30.76 3.91
6434 6639 5.492895 TCTATTTTTGAAGTGATGCCCGTA 58.507 37.500 0.00 0.00 0.00 4.02
6452 6657 2.731451 CGTATTGTGTATGATCTGGCCG 59.269 50.000 0.00 0.00 0.00 6.13
6457 6662 1.933853 GTGTATGATCTGGCCGTTGTC 59.066 52.381 0.00 0.00 0.00 3.18
6492 6697 2.581409 AAATACGCGTCGAGGCCG 60.581 61.111 18.63 19.35 37.07 6.13
6493 6698 3.055080 AAATACGCGTCGAGGCCGA 62.055 57.895 18.63 12.25 43.35 5.54
6579 6995 3.545228 CGCACAATGACGTTTACAAGTGT 60.545 43.478 0.00 0.00 33.32 3.55
6590 7007 4.448210 GTTTACAAGTGTGGACTGGAGAA 58.552 43.478 0.00 0.00 30.61 2.87
6599 7016 4.819630 GTGTGGACTGGAGAACACAATAAA 59.180 41.667 0.00 0.00 44.41 1.40
6600 7017 5.049405 GTGTGGACTGGAGAACACAATAAAG 60.049 44.000 0.00 0.00 44.41 1.85
6601 7018 5.063880 GTGGACTGGAGAACACAATAAAGT 58.936 41.667 0.00 0.00 34.16 2.66
6603 7020 6.708949 GTGGACTGGAGAACACAATAAAGTAA 59.291 38.462 0.00 0.00 34.16 2.24
6604 7021 7.390718 GTGGACTGGAGAACACAATAAAGTAAT 59.609 37.037 0.00 0.00 34.16 1.89
6606 7023 7.390718 GGACTGGAGAACACAATAAAGTAATGT 59.609 37.037 0.00 0.00 0.00 2.71
6690 7107 7.813852 AAAGATCGTGTCAATGTTCTAGTAC 57.186 36.000 0.00 0.00 0.00 2.73
6696 7113 6.093219 TCGTGTCAATGTTCTAGTACCTACTC 59.907 42.308 0.00 0.00 37.73 2.59
6709 7126 8.549731 TCTAGTACCTACTCAGTATATCATGGG 58.450 40.741 0.00 0.00 37.73 4.00
6737 7154 8.745149 AGAGTATCCTATGTCTCTAGGTTAGA 57.255 38.462 0.00 0.00 39.51 2.10
6738 7155 8.599792 AGAGTATCCTATGTCTCTAGGTTAGAC 58.400 40.741 3.64 3.64 39.51 2.59
6739 7156 8.514533 AGTATCCTATGTCTCTAGGTTAGACT 57.485 38.462 10.46 1.43 43.13 3.24
6740 7157 8.951541 AGTATCCTATGTCTCTAGGTTAGACTT 58.048 37.037 10.46 7.39 43.13 3.01
6744 7161 9.406113 TCCTATGTCTCTAGGTTAGACTTAAAC 57.594 37.037 10.46 0.00 43.13 2.01
6745 7162 8.344098 CCTATGTCTCTAGGTTAGACTTAAACG 58.656 40.741 10.46 0.00 43.13 3.60
6746 7163 5.947443 TGTCTCTAGGTTAGACTTAAACGC 58.053 41.667 10.46 0.00 43.13 4.84
6747 7164 5.709164 TGTCTCTAGGTTAGACTTAAACGCT 59.291 40.000 10.46 0.00 43.13 5.07
6748 7165 6.128063 TGTCTCTAGGTTAGACTTAAACGCTC 60.128 42.308 10.46 0.00 43.13 5.03
6749 7166 6.093909 GTCTCTAGGTTAGACTTAAACGCTCT 59.906 42.308 3.41 0.00 40.21 4.09
6750 7167 6.658391 TCTCTAGGTTAGACTTAAACGCTCTT 59.342 38.462 0.00 0.00 31.56 2.85
6751 7168 7.826252 TCTCTAGGTTAGACTTAAACGCTCTTA 59.174 37.037 0.00 0.00 31.56 2.10
6752 7169 8.517062 TCTAGGTTAGACTTAAACGCTCTTAT 57.483 34.615 0.00 0.00 31.56 1.73
6753 7170 9.618890 TCTAGGTTAGACTTAAACGCTCTTATA 57.381 33.333 0.00 0.00 31.56 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.544691 GACGTACAGGCAGGAAGAGAA 59.455 52.381 0.00 0.00 0.00 2.87
131 133 3.131326 CGTCTCCGCCATTAACACA 57.869 52.632 0.00 0.00 0.00 3.72
165 167 3.744719 CCGCGTCTCCGTTCCAGA 61.745 66.667 4.92 0.00 36.15 3.86
275 277 2.731451 TCAAACAATCGCGTCAAGAGAG 59.269 45.455 5.77 0.00 30.65 3.20
277 279 3.059597 AGTTCAAACAATCGCGTCAAGAG 60.060 43.478 5.77 0.00 0.00 2.85
285 287 5.505286 CAGATCCATAGTTCAAACAATCGC 58.495 41.667 0.00 0.00 0.00 4.58
293 295 3.632643 TGCTGCAGATCCATAGTTCAA 57.367 42.857 20.43 0.00 0.00 2.69
307 309 0.106335 CCAACCCAAAACATGCTGCA 59.894 50.000 4.13 4.13 0.00 4.41
315 317 4.656117 CCGCCGCCAACCCAAAAC 62.656 66.667 0.00 0.00 0.00 2.43
337 339 3.048600 TCTGAGGTTATCCATCCCCTTG 58.951 50.000 0.00 0.00 35.89 3.61
352 354 4.535781 TCTTTCTCTCTCCATCTCTGAGG 58.464 47.826 4.59 0.00 0.00 3.86
355 357 4.439974 CCGTTCTTTCTCTCTCCATCTCTG 60.440 50.000 0.00 0.00 0.00 3.35
357 359 3.697045 TCCGTTCTTTCTCTCTCCATCTC 59.303 47.826 0.00 0.00 0.00 2.75
390 392 6.347725 CCAAAAACACGAACCAAATTGAACAA 60.348 34.615 0.00 0.00 0.00 2.83
401 403 2.287393 AACAGCCAAAAACACGAACC 57.713 45.000 0.00 0.00 0.00 3.62
424 426 3.526931 ATGTCCACACGAATCACCTAG 57.473 47.619 0.00 0.00 0.00 3.02
431 433 4.023980 TCTTCTCCTATGTCCACACGAAT 58.976 43.478 0.00 0.00 0.00 3.34
458 460 4.833390 ACTTGTAGATGTAAGTGGCCTTC 58.167 43.478 3.32 0.00 35.91 3.46
462 464 4.473477 AGGACTTGTAGATGTAAGTGGC 57.527 45.455 0.00 0.00 37.27 5.01
527 530 9.352784 GCATGCAACATTATTACTGTAGAAAAA 57.647 29.630 14.21 0.00 0.00 1.94
538 541 8.084684 TGTTTGTGTAAGCATGCAACATTATTA 58.915 29.630 23.49 8.77 0.00 0.98
539 542 6.927936 TGTTTGTGTAAGCATGCAACATTATT 59.072 30.769 23.49 9.68 0.00 1.40
540 543 6.453943 TGTTTGTGTAAGCATGCAACATTAT 58.546 32.000 23.49 0.00 0.00 1.28
549 552 4.111198 TGCAGTTTGTTTGTGTAAGCATG 58.889 39.130 0.00 0.00 0.00 4.06
572 576 3.432378 AGATGATCCACTCCCCGTATAC 58.568 50.000 0.00 0.00 0.00 1.47
573 577 3.333980 AGAGATGATCCACTCCCCGTATA 59.666 47.826 11.08 0.00 34.13 1.47
578 582 2.397044 AGAGAGATGATCCACTCCCC 57.603 55.000 11.66 5.77 34.13 4.81
584 588 4.533001 TGAGGAGAAGAGAGATGATCCA 57.467 45.455 0.00 0.00 0.00 3.41
590 594 7.738437 AGAAAAGATTGAGGAGAAGAGAGAT 57.262 36.000 0.00 0.00 0.00 2.75
592 596 8.310382 TGTAAGAAAAGATTGAGGAGAAGAGAG 58.690 37.037 0.00 0.00 0.00 3.20
600 604 7.502060 AGAGGATGTAAGAAAAGATTGAGGA 57.498 36.000 0.00 0.00 0.00 3.71
605 609 9.593565 AAAAGGAAGAGGATGTAAGAAAAGATT 57.406 29.630 0.00 0.00 0.00 2.40
667 671 8.611757 GCTAAAAGAGAAGAATGGAGAAGAATC 58.388 37.037 0.00 0.00 0.00 2.52
696 702 7.980662 ACAGATATGATGAAAGTTCAGAGACAG 59.019 37.037 0.00 0.00 41.08 3.51
735 742 2.834549 GGGAGAGAGAACTGTTCCATCA 59.165 50.000 16.48 0.00 35.38 3.07
771 778 9.578439 AGCAAATTGAATAGCTGTCTAAATTTC 57.422 29.630 0.00 0.00 35.72 2.17
779 786 5.338365 CCTGAAGCAAATTGAATAGCTGTC 58.662 41.667 0.00 0.00 37.41 3.51
780 787 4.381292 GCCTGAAGCAAATTGAATAGCTGT 60.381 41.667 0.00 0.00 42.97 4.40
819 830 6.034898 GGCATATGTGAAGAAAATGTTTTCCG 59.965 38.462 13.10 0.00 45.84 4.30
866 877 8.548877 ACTCTAATTAGCAACCTCTTATTTCCA 58.451 33.333 7.67 0.00 0.00 3.53
895 906 9.130661 TCTCATTTGAACAAGAAAGGAAACATA 57.869 29.630 0.00 0.00 0.00 2.29
898 909 8.190784 TCTTCTCATTTGAACAAGAAAGGAAAC 58.809 33.333 0.00 0.00 0.00 2.78
906 917 9.687210 CAATTTGATCTTCTCATTTGAACAAGA 57.313 29.630 0.00 4.80 32.83 3.02
971 982 2.260844 TGCTCAAACCTGAGGAACAG 57.739 50.000 4.99 0.00 45.99 3.16
998 1009 3.623060 CGTTCCACTGAAGATACCCATTG 59.377 47.826 0.00 0.00 0.00 2.82
1086 1097 2.501723 ACCATCCTTAGTACTGCACAGG 59.498 50.000 5.39 5.82 0.00 4.00
1098 1109 0.331278 CCAGGGCAACACCATCCTTA 59.669 55.000 0.00 0.00 42.05 2.69
1320 1331 4.629634 TGACATACACCATTAGAAGCGTTG 59.370 41.667 0.00 0.00 0.00 4.10
1321 1332 4.827692 TGACATACACCATTAGAAGCGTT 58.172 39.130 0.00 0.00 0.00 4.84
1322 1333 4.465632 TGACATACACCATTAGAAGCGT 57.534 40.909 0.00 0.00 0.00 5.07
1324 1335 7.497249 AGAAGAATGACATACACCATTAGAAGC 59.503 37.037 0.00 0.00 33.57 3.86
1366 1378 3.018149 ACAGCCGACAAGGTTAAACAAA 58.982 40.909 0.00 0.00 43.70 2.83
1419 1431 4.817318 AAAGAAAAGGAAACTGTGGCAA 57.183 36.364 0.00 0.00 42.68 4.52
1617 1633 0.535335 ATGGCAGGCAAGCAGAAATG 59.465 50.000 0.00 0.00 35.83 2.32
1634 1650 1.542915 CTTGCTGGTTCCAGGAACATG 59.457 52.381 29.89 22.18 43.54 3.21
1635 1651 1.425066 TCTTGCTGGTTCCAGGAACAT 59.575 47.619 29.89 0.00 43.54 2.71
1665 1681 3.628942 TGCATGAGTTCATCCAGCATAAC 59.371 43.478 0.00 0.00 33.61 1.89
1806 1827 8.715998 CATAATCAGGTTTATGTACAGCAGATC 58.284 37.037 0.33 0.00 35.67 2.75
1815 1836 6.125719 TGGCAAGCATAATCAGGTTTATGTA 58.874 36.000 10.26 0.00 40.27 2.29
1898 1920 1.963172 AAGGTCCTTCGCGTTTTCTT 58.037 45.000 5.77 1.27 0.00 2.52
1908 1930 8.764287 CAATTAAATGAAACACAAAGGTCCTTC 58.236 33.333 4.10 0.00 0.00 3.46
1930 1952 9.521503 GCAACTTTAAACTCTCTCTTTTCAATT 57.478 29.630 0.00 0.00 0.00 2.32
1955 1977 4.437930 GCATCCTTTCTACATCACAACTGC 60.438 45.833 0.00 0.00 0.00 4.40
2031 2053 1.133025 GTCGGCAGCTGCATTACAAAT 59.867 47.619 37.63 0.00 44.36 2.32
2035 2057 1.298157 TGTGTCGGCAGCTGCATTAC 61.298 55.000 37.63 29.36 44.36 1.89
2087 2109 7.742089 CGCAGAATTGAAGTAACAAGAGTTAAG 59.258 37.037 0.00 0.00 41.58 1.85
2090 2112 5.527582 ACGCAGAATTGAAGTAACAAGAGTT 59.472 36.000 0.00 0.00 41.74 3.01
2097 2120 4.483476 AACCACGCAGAATTGAAGTAAC 57.517 40.909 0.00 0.00 0.00 2.50
2112 2135 3.303881 TCTCAGATGACAGAAACCACG 57.696 47.619 0.00 0.00 0.00 4.94
2237 2260 3.003480 GAGTGATCACCTTGGCAGTTAC 58.997 50.000 22.21 0.00 0.00 2.50
2238 2261 2.027192 GGAGTGATCACCTTGGCAGTTA 60.027 50.000 22.21 0.00 0.00 2.24
2270 2293 9.121517 GATTCCTTGCAAACATAATGATAATCG 57.878 33.333 0.00 0.00 0.00 3.34
2397 2420 1.260825 CGAGCAGCTGCATCATAAGTG 59.739 52.381 38.24 15.31 45.16 3.16
2401 2424 1.952635 CGCGAGCAGCTGCATCATA 60.953 57.895 38.24 0.00 45.59 2.15
2417 2440 2.134201 AAACTACTTTGCAAAGCCGC 57.866 45.000 33.72 0.00 39.63 6.53
2463 2486 9.489084 GAGCCAAAAGGTATCTAAACAATTTTT 57.511 29.630 0.00 0.00 0.00 1.94
2477 2500 3.460825 AGATGGTAGGAGCCAAAAGGTA 58.539 45.455 0.00 0.00 42.48 3.08
2486 2509 6.295405 GGATAGTTTAGGAAGATGGTAGGAGC 60.295 46.154 0.00 0.00 0.00 4.70
2506 2529 4.709397 AGTCCAACAGAAGTGAGAGGATAG 59.291 45.833 0.00 0.00 0.00 2.08
2521 2544 9.295825 ACTGAAATCATAAAATGTAGTCCAACA 57.704 29.630 0.00 0.00 0.00 3.33
2522 2545 9.774742 GACTGAAATCATAAAATGTAGTCCAAC 57.225 33.333 0.00 0.00 0.00 3.77
2579 2602 2.096248 TGTCCCAAAAGCTTTTCACGT 58.904 42.857 21.45 0.00 0.00 4.49
2582 2605 3.831911 CCCTATGTCCCAAAAGCTTTTCA 59.168 43.478 21.45 16.12 0.00 2.69
2641 2664 2.494073 GGTGAGCTCGGGATAGGAATAG 59.506 54.545 9.64 0.00 0.00 1.73
2865 2897 0.957395 AAGAGTGCAGTCCATTGCCG 60.957 55.000 18.04 0.00 43.43 5.69
2977 3010 4.469657 TCTTGCTGACCTGTAAAACCAAT 58.530 39.130 0.00 0.00 0.00 3.16
3017 3050 0.909623 ACCATGTACCTGTAGGCACC 59.090 55.000 0.00 0.00 39.32 5.01
3049 3082 3.288092 GGAGGAACTTTTGTTGTCTGGT 58.712 45.455 0.00 0.00 43.66 4.00
3091 3124 4.929819 ACAAACTCGCCAAATAAAGGTT 57.070 36.364 0.00 0.00 0.00 3.50
3093 3126 4.234574 GGAACAAACTCGCCAAATAAAGG 58.765 43.478 0.00 0.00 0.00 3.11
3166 3199 9.520515 ACAAGTATCAACAGGATCAAAGTTAAT 57.479 29.630 0.00 0.00 37.44 1.40
3180 3213 7.123098 TCCGACCTTAATAGACAAGTATCAACA 59.877 37.037 0.00 0.00 0.00 3.33
3329 3362 1.476007 AAGAGCTTCCTGCCGACAGT 61.476 55.000 0.00 0.00 42.81 3.55
3340 3373 3.233684 ACCGCTACAACTAAGAGCTTC 57.766 47.619 0.00 0.00 33.91 3.86
3494 3538 3.047718 CTTGCACTGCCATGGCTCG 62.048 63.158 35.53 27.27 42.51 5.03
3509 3553 4.861102 AGAAAGCTTCCAATTCCACTTG 57.139 40.909 0.00 0.00 0.00 3.16
3546 3590 2.756760 TCGTCCGCCCATATAGATAACC 59.243 50.000 0.00 0.00 0.00 2.85
3621 3665 5.713389 TCCGGTGACAAGAAGAGTAATAAGA 59.287 40.000 0.00 0.00 0.00 2.10
3653 3697 5.010719 CCAGCAATAGGACTAAGTATCGGAA 59.989 44.000 0.00 0.00 0.00 4.30
3670 3714 6.769512 AGATATTTGTACCGTATCCAGCAAT 58.230 36.000 0.00 0.00 0.00 3.56
3671 3715 6.169557 AGATATTTGTACCGTATCCAGCAA 57.830 37.500 0.00 0.00 0.00 3.91
3728 3772 2.513753 CCATGCCTTTTACTGACACCA 58.486 47.619 0.00 0.00 0.00 4.17
3752 3796 8.246430 TGAAAGTATAATAGATGTTCCCTCGT 57.754 34.615 0.00 0.00 0.00 4.18
3788 3832 4.701171 AGTAGAAACGAGTAGGAACAGGAG 59.299 45.833 0.00 0.00 0.00 3.69
3997 4041 2.262423 AAAGTGGAAGTGTCTCCTGC 57.738 50.000 0.00 0.00 36.35 4.85
4056 4100 2.009051 CACCATTCATGCAGTCGCTAA 58.991 47.619 0.00 0.00 39.64 3.09
4139 4183 6.487299 AAGTGGGCTACTAATTCCTCTTAG 57.513 41.667 3.17 0.00 39.18 2.18
4295 4339 9.814899 TGCATAATAACCAAAAGAAACATATGG 57.185 29.630 7.80 0.00 37.19 2.74
4342 4386 9.396022 CCACATACTAATACAACCTTCAAGAAT 57.604 33.333 0.00 0.00 0.00 2.40
4426 4470 4.836125 ATAATGAGGTGCCGCAATAAAG 57.164 40.909 0.00 0.00 0.00 1.85
4429 4473 4.617253 ACTATAATGAGGTGCCGCAATA 57.383 40.909 0.00 0.00 0.00 1.90
4456 4500 6.216868 GGATAGGAAGGTAGGGGCATATTTTA 59.783 42.308 0.00 0.00 0.00 1.52
4461 4505 2.733637 AGGATAGGAAGGTAGGGGCATA 59.266 50.000 0.00 0.00 0.00 3.14
4520 4564 6.147164 GGGCTTAAAATGGCTTTGTTTTAGTC 59.853 38.462 0.00 0.00 33.02 2.59
4524 4568 4.786425 TGGGCTTAAAATGGCTTTGTTTT 58.214 34.783 0.00 0.00 0.00 2.43
4679 4738 1.115326 AGCCCCTGAACAAAGTTGCC 61.115 55.000 0.00 0.00 0.00 4.52
4953 5014 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
4995 5056 6.522946 ACTCCCTCCGTTTCTAAATATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
5131 5196 5.505181 AGAAACATAACATGGTCTGTCCT 57.495 39.130 1.80 0.90 36.98 3.85
5182 5248 8.405531 CAAATGGATATGAGAACCATAAAACGT 58.594 33.333 0.00 0.00 42.59 3.99
5252 5318 1.398390 CACGGCAGATTTGGTCTAAGC 59.602 52.381 0.00 0.00 34.69 3.09
5294 5360 6.206634 AGGATACGAAAGAATCAAGCAAAACA 59.793 34.615 0.00 0.00 46.39 2.83
5347 5413 5.689383 TGAGTTGCAGAACAAAGAATACC 57.311 39.130 0.00 0.00 40.82 2.73
5464 5531 6.279513 AGCCTTATGTGAGATGATAGCTAC 57.720 41.667 0.00 0.00 0.00 3.58
5479 5546 3.766591 ACTCATAGATCCGGAGCCTTATG 59.233 47.826 17.84 18.08 31.88 1.90
5502 5569 8.692710 TCAACTACATCGTGGTAATATTTCTCT 58.307 33.333 0.00 0.00 0.00 3.10
5503 5570 8.867112 TCAACTACATCGTGGTAATATTTCTC 57.133 34.615 0.00 0.00 0.00 2.87
5563 5630 2.978156 AGGTCTCAGCCATTTTTGGA 57.022 45.000 0.00 0.00 0.00 3.53
5791 5859 5.163416 ACACCAACCTTTTCCATTGAAGAAG 60.163 40.000 0.00 0.00 0.00 2.85
5847 6046 3.864583 TGCAAAGCGATAAATTGCCATTC 59.135 39.130 6.14 0.00 37.94 2.67
5958 6157 5.283457 AGTATCTAACAATCTGGCTCACC 57.717 43.478 0.00 0.00 0.00 4.02
5985 6184 4.582701 TGGCGAGATGTTTCAAAAATGT 57.417 36.364 0.00 0.00 0.00 2.71
6005 6204 9.727627 GTTCCTATTTCTAAGCAAGAATTCATG 57.272 33.333 8.44 7.31 43.75 3.07
6034 6233 0.608130 CAACCATCCGACTGAGGTCA 59.392 55.000 0.00 0.00 42.21 4.02
6043 6242 2.354729 CCCAAGCCAACCATCCGA 59.645 61.111 0.00 0.00 0.00 4.55
6049 6248 0.613012 AGAGAATGCCCAAGCCAACC 60.613 55.000 0.00 0.00 38.69 3.77
6230 6432 3.942130 AATTAAGCCTGTGAACCTTGC 57.058 42.857 0.00 0.00 0.00 4.01
6242 6444 3.438360 CTCATTCACCGCAAATTAAGCC 58.562 45.455 0.00 0.00 0.00 4.35
6280 6482 6.900194 TCCCTTAACAGATTTCATCCCTTAG 58.100 40.000 0.00 0.00 0.00 2.18
6313 6515 4.563184 GGTATTCTAACACAGCAGACTTCG 59.437 45.833 0.00 0.00 0.00 3.79
6314 6516 5.479306 TGGTATTCTAACACAGCAGACTTC 58.521 41.667 0.00 0.00 0.00 3.01
6315 6517 5.483685 TGGTATTCTAACACAGCAGACTT 57.516 39.130 0.00 0.00 0.00 3.01
6342 6544 0.606604 ACCCCGAGTACATGACACAC 59.393 55.000 0.00 0.00 0.00 3.82
6363 6568 6.747739 CACCATACGATGTACAGATATAGCAC 59.252 42.308 0.33 0.00 0.00 4.40
6421 6626 2.489938 ACACAATACGGGCATCACTT 57.510 45.000 0.00 0.00 0.00 3.16
6426 6631 4.318332 CAGATCATACACAATACGGGCAT 58.682 43.478 0.00 0.00 0.00 4.40
6429 6634 3.067106 GCCAGATCATACACAATACGGG 58.933 50.000 0.00 0.00 0.00 5.28
6434 6639 2.945008 CAACGGCCAGATCATACACAAT 59.055 45.455 2.24 0.00 0.00 2.71
6452 6657 0.109272 TCTGAGCATCCGACGACAAC 60.109 55.000 0.00 0.00 0.00 3.32
6457 6662 1.926561 TTGAATCTGAGCATCCGACG 58.073 50.000 0.00 0.00 28.86 5.12
6492 6697 7.762159 TCCCACACAAGAAAAACAAGTAAAATC 59.238 33.333 0.00 0.00 0.00 2.17
6493 6698 7.547722 GTCCCACACAAGAAAAACAAGTAAAAT 59.452 33.333 0.00 0.00 0.00 1.82
6494 6699 6.869388 GTCCCACACAAGAAAAACAAGTAAAA 59.131 34.615 0.00 0.00 0.00 1.52
6498 6914 4.086457 AGTCCCACACAAGAAAAACAAGT 58.914 39.130 0.00 0.00 0.00 3.16
6579 6995 5.304686 ACTTTATTGTGTTCTCCAGTCCA 57.695 39.130 0.00 0.00 0.00 4.02
6671 7088 5.942236 AGTAGGTACTAGAACATTGACACGA 59.058 40.000 0.00 0.00 44.14 4.35
6690 7107 6.427441 TCTAGCCCATGATATACTGAGTAGG 58.573 44.000 0.00 0.00 0.00 3.18
6696 7113 7.283625 GGATACTCTAGCCCATGATATACTG 57.716 44.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.