Multiple sequence alignment - TraesCS3A01G182700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G182700 chr3A 100.000 3955 0 0 1 3955 212091082 212087128 0.000000e+00 7304
1 TraesCS3A01G182700 chr3A 90.494 263 24 1 420 681 319962337 319962599 2.930000e-91 346
2 TraesCS3A01G182700 chr3B 94.305 1791 67 12 1649 3413 252358427 252356646 0.000000e+00 2710
3 TraesCS3A01G182700 chr3B 93.576 825 36 8 803 1623 252359416 252358605 0.000000e+00 1214
4 TraesCS3A01G182700 chr3B 90.076 262 25 1 420 681 377115145 377115405 4.900000e-89 339
5 TraesCS3A01G182700 chr3B 91.566 249 12 2 3413 3661 252356581 252356342 6.330000e-88 335
6 TraesCS3A01G182700 chr3B 94.286 210 6 1 3721 3924 252356340 252356131 2.290000e-82 316
7 TraesCS3A01G182700 chr3D 95.279 1525 50 8 1622 3131 173617584 173616067 0.000000e+00 2398
8 TraesCS3A01G182700 chr3D 91.196 1647 85 17 1 1623 173619318 173617708 0.000000e+00 2183
9 TraesCS3A01G182700 chr3D 88.561 542 25 16 3149 3660 173615795 173615261 1.210000e-174 623
10 TraesCS3A01G182700 chr3D 97.549 204 5 0 3721 3924 173615258 173615055 2.260000e-92 350
11 TraesCS3A01G182700 chr7A 90.734 259 22 2 423 681 14921996 14921740 1.050000e-90 344
12 TraesCS3A01G182700 chr7D 90.698 258 21 3 423 679 579964213 579963958 1.360000e-89 340
13 TraesCS3A01G182700 chr5D 90.114 263 24 2 420 681 451067404 451067143 1.360000e-89 340
14 TraesCS3A01G182700 chr5D 90.000 260 26 0 423 682 132472891 132472632 1.760000e-88 337
15 TraesCS3A01G182700 chr5D 86.495 311 35 4 380 690 7560002 7559699 6.330000e-88 335
16 TraesCS3A01G182700 chr5D 96.875 64 2 0 3657 3720 505361960 505361897 1.500000e-19 108
17 TraesCS3A01G182700 chr2A 89.552 268 23 3 423 690 49496270 49496008 6.330000e-88 335
18 TraesCS3A01G182700 chr2A 82.353 357 56 5 1 351 564613736 564614091 1.790000e-78 303
19 TraesCS3A01G182700 chr2A 94.118 68 4 0 3653 3720 659096318 659096385 1.940000e-18 104
20 TraesCS3A01G182700 chr6A 80.000 360 61 9 1 352 11128317 11128673 5.070000e-64 255
21 TraesCS3A01G182700 chr6A 79.778 361 60 12 1 352 10350234 10349878 2.360000e-62 250
22 TraesCS3A01G182700 chr6A 79.778 361 60 12 1 352 10354681 10354325 2.360000e-62 250
23 TraesCS3A01G182700 chr2B 80.000 355 64 5 3 351 513249966 513249613 5.070000e-64 255
24 TraesCS3A01G182700 chrUn 79.778 361 60 12 1 352 315895287 315894931 2.360000e-62 250
25 TraesCS3A01G182700 chrUn 79.778 361 60 12 1 352 315906114 315905758 2.360000e-62 250
26 TraesCS3A01G182700 chrUn 79.778 361 60 12 1 352 323249437 323249793 2.360000e-62 250
27 TraesCS3A01G182700 chr5A 95.455 66 3 0 3655 3720 248535324 248535389 5.410000e-19 106
28 TraesCS3A01G182700 chr5A 94.118 68 4 0 3653 3720 428970085 428970152 1.940000e-18 104
29 TraesCS3A01G182700 chr1D 96.825 63 2 0 3658 3720 216133336 216133274 5.410000e-19 106
30 TraesCS3A01G182700 chr1A 96.825 63 2 0 3658 3720 50284391 50284453 5.410000e-19 106
31 TraesCS3A01G182700 chr6D 95.385 65 3 0 3656 3720 25851373 25851309 1.940000e-18 104
32 TraesCS3A01G182700 chr1B 94.118 68 4 0 3653 3720 492329967 492329900 1.940000e-18 104
33 TraesCS3A01G182700 chr4A 91.781 73 6 0 3648 3720 574539876 574539948 6.990000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G182700 chr3A 212087128 212091082 3954 True 7304.00 7304 100.00000 1 3955 1 chr3A.!!$R1 3954
1 TraesCS3A01G182700 chr3B 252356131 252359416 3285 True 1143.75 2710 93.43325 803 3924 4 chr3B.!!$R1 3121
2 TraesCS3A01G182700 chr3D 173615055 173619318 4263 True 1388.50 2398 93.14625 1 3924 4 chr3D.!!$R1 3923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 332 0.179145 ACGATAGGCACGAGAAACCG 60.179 55.0 0.0 0.0 43.77 4.44 F
1212 1240 0.404040 ACGTCATGTTCAACCCCCAT 59.596 50.0 0.0 0.0 0.00 4.00 F
2660 2854 0.874390 TTTCAGGCATTGCAGACGTC 59.126 50.0 7.7 7.7 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2494 0.387622 CCACCATGCAAGCAAACTCG 60.388 55.000 0.0 0.0 0.00 4.18 R
2828 3022 1.079612 CGGAGTGCTGCACATCTCA 60.080 57.895 31.9 0.0 36.74 3.27 R
3666 4206 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.0 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.516386 CGTGGATCCACCGAAGACG 60.516 63.158 34.05 19.76 43.49 4.18
39 40 1.590147 GTGGATCCACCGAAGACGT 59.410 57.895 31.37 0.00 42.61 4.34
40 41 0.458025 GTGGATCCACCGAAGACGTC 60.458 60.000 31.37 7.70 42.61 4.34
41 42 0.611062 TGGATCCACCGAAGACGTCT 60.611 55.000 13.58 13.58 42.61 4.18
75 79 1.205893 GAGATCCGCCAGAGACAAACT 59.794 52.381 0.00 0.00 0.00 2.66
76 80 1.205893 AGATCCGCCAGAGACAAACTC 59.794 52.381 0.00 0.00 45.22 3.01
78 82 1.118965 TCCGCCAGAGACAAACTCCA 61.119 55.000 0.00 0.00 45.96 3.86
79 83 0.951040 CCGCCAGAGACAAACTCCAC 60.951 60.000 0.00 0.00 45.96 4.02
80 84 0.249868 CGCCAGAGACAAACTCCACA 60.250 55.000 0.00 0.00 45.96 4.17
81 85 1.230324 GCCAGAGACAAACTCCACAC 58.770 55.000 0.00 0.00 45.96 3.82
82 86 1.502231 CCAGAGACAAACTCCACACG 58.498 55.000 0.00 0.00 45.96 4.49
83 87 1.202533 CCAGAGACAAACTCCACACGT 60.203 52.381 0.00 0.00 45.96 4.49
84 88 2.128035 CAGAGACAAACTCCACACGTC 58.872 52.381 0.00 0.00 45.96 4.34
109 113 3.879295 CCGATGATGCTAGAAACACCATT 59.121 43.478 0.00 0.00 0.00 3.16
110 114 5.056480 CCGATGATGCTAGAAACACCATTA 58.944 41.667 0.00 0.00 0.00 1.90
155 159 5.289083 ACCTTATTCCATCTTCAGAGAGC 57.711 43.478 0.00 0.00 34.85 4.09
160 164 1.684386 CCATCTTCAGAGAGCCGCCT 61.684 60.000 0.00 0.00 34.85 5.52
163 167 0.900182 TCTTCAGAGAGCCGCCTTCA 60.900 55.000 0.00 0.00 0.00 3.02
179 183 2.333014 CTTCACCTCGACTTTCTGAGC 58.667 52.381 0.00 0.00 0.00 4.26
201 205 5.243060 AGCAGGACATAAACCCTAACAAAAC 59.757 40.000 0.00 0.00 0.00 2.43
210 214 9.981114 CATAAACCCTAACAAAACTCAAGAAAT 57.019 29.630 0.00 0.00 0.00 2.17
214 218 9.981114 AACCCTAACAAAACTCAAGAAATTATG 57.019 29.630 0.00 0.00 0.00 1.90
226 230 7.447238 ACTCAAGAAATTATGAAAAACCGGAGA 59.553 33.333 9.46 0.00 0.00 3.71
227 231 7.590279 TCAAGAAATTATGAAAAACCGGAGAC 58.410 34.615 9.46 0.00 0.00 3.36
233 237 0.399075 GAAAAACCGGAGACCTCCCA 59.601 55.000 9.46 0.00 46.96 4.37
236 240 2.976284 AAACCGGAGACCTCCCACCA 62.976 60.000 9.46 0.00 46.96 4.17
247 251 3.636231 CCCACCAGCAAGGGTCGA 61.636 66.667 0.04 0.00 43.89 4.20
248 252 2.429930 CCACCAGCAAGGGTCGAA 59.570 61.111 0.00 0.00 43.89 3.71
281 285 0.552848 CCATGGCCCTAAGACCACAT 59.447 55.000 0.00 0.00 39.19 3.21
287 291 2.483188 GGCCCTAAGACCACATAAGACG 60.483 54.545 0.00 0.00 0.00 4.18
290 294 3.068307 CCCTAAGACCACATAAGACGAGG 59.932 52.174 0.00 0.00 0.00 4.63
296 300 3.946558 GACCACATAAGACGAGGTAGACT 59.053 47.826 0.00 0.00 31.57 3.24
297 301 3.695060 ACCACATAAGACGAGGTAGACTG 59.305 47.826 0.00 0.00 0.00 3.51
298 302 3.066900 CCACATAAGACGAGGTAGACTGG 59.933 52.174 0.00 0.00 0.00 4.00
300 304 1.376543 TAAGACGAGGTAGACTGGCG 58.623 55.000 0.00 0.00 0.00 5.69
303 307 3.449227 CGAGGTAGACTGGCGGCA 61.449 66.667 12.58 12.58 0.00 5.69
305 309 3.724914 GAGGTAGACTGGCGGCAGC 62.725 68.421 36.06 27.39 44.18 5.25
328 332 0.179145 ACGATAGGCACGAGAAACCG 60.179 55.000 0.00 0.00 43.77 4.44
335 339 1.352156 GCACGAGAAACCGTAGCCAG 61.352 60.000 0.00 0.00 41.29 4.85
357 373 6.366630 CAGATGGTTCTCTTTCTTCGAAAAC 58.633 40.000 0.00 0.00 0.00 2.43
396 412 9.817809 TGTGGATGATGTAGTTTTTATCTCTAC 57.182 33.333 0.00 0.00 35.86 2.59
419 435 4.895668 ACTCAACGTAAGGTTCCCATTA 57.104 40.909 0.00 0.00 46.39 1.90
420 436 4.828829 ACTCAACGTAAGGTTCCCATTAG 58.171 43.478 0.00 0.00 46.39 1.73
422 438 5.189145 ACTCAACGTAAGGTTCCCATTAGAT 59.811 40.000 0.00 0.00 46.39 1.98
423 439 6.057321 TCAACGTAAGGTTCCCATTAGATT 57.943 37.500 0.00 0.00 46.39 2.40
424 440 6.110707 TCAACGTAAGGTTCCCATTAGATTC 58.889 40.000 0.00 0.00 46.39 2.52
425 441 5.952347 ACGTAAGGTTCCCATTAGATTCT 57.048 39.130 0.00 0.00 46.39 2.40
426 442 5.915175 ACGTAAGGTTCCCATTAGATTCTC 58.085 41.667 0.00 0.00 46.39 2.87
427 443 5.424252 ACGTAAGGTTCCCATTAGATTCTCA 59.576 40.000 0.00 0.00 46.39 3.27
428 444 6.099845 ACGTAAGGTTCCCATTAGATTCTCAT 59.900 38.462 0.00 0.00 46.39 2.90
429 445 6.992715 CGTAAGGTTCCCATTAGATTCTCATT 59.007 38.462 0.00 0.00 0.00 2.57
430 446 7.499232 CGTAAGGTTCCCATTAGATTCTCATTT 59.501 37.037 0.00 0.00 0.00 2.32
431 447 7.888250 AAGGTTCCCATTAGATTCTCATTTC 57.112 36.000 0.00 0.00 0.00 2.17
432 448 6.973642 AGGTTCCCATTAGATTCTCATTTCA 58.026 36.000 0.00 0.00 0.00 2.69
433 449 6.830838 AGGTTCCCATTAGATTCTCATTTCAC 59.169 38.462 0.00 0.00 0.00 3.18
434 450 6.039829 GGTTCCCATTAGATTCTCATTTCACC 59.960 42.308 0.00 0.00 0.00 4.02
435 451 6.581388 TCCCATTAGATTCTCATTTCACCT 57.419 37.500 0.00 0.00 0.00 4.00
442 458 9.972106 ATTAGATTCTCATTTCACCTTTCTTCT 57.028 29.630 0.00 0.00 0.00 2.85
448 464 7.911651 TCTCATTTCACCTTTCTTCTCACTAT 58.088 34.615 0.00 0.00 0.00 2.12
450 466 7.106239 TCATTTCACCTTTCTTCTCACTATCC 58.894 38.462 0.00 0.00 0.00 2.59
507 523 9.778993 CAATCACCTCAATTTACTTACATTCTG 57.221 33.333 0.00 0.00 0.00 3.02
523 539 9.350357 CTTACATTCTGAATCAATTCCACTTTG 57.650 33.333 0.00 0.00 35.97 2.77
541 557 9.974980 TCCACTTTGATTTACTTACCAAATTTC 57.025 29.630 0.00 0.00 0.00 2.17
633 649 4.688879 TGACAGGTAAATCACAAGCTAACG 59.311 41.667 0.00 0.00 0.00 3.18
639 655 8.875803 CAGGTAAATCACAAGCTAACGTATTAA 58.124 33.333 0.00 0.00 0.00 1.40
664 680 9.964303 AAAATATTTATATCTCATTGCAACGCA 57.036 25.926 0.00 0.00 36.47 5.24
665 681 8.955061 AATATTTATATCTCATTGCAACGCAC 57.045 30.769 0.00 0.00 38.71 5.34
666 682 5.809719 TTTATATCTCATTGCAACGCACA 57.190 34.783 0.00 0.00 38.71 4.57
667 683 6.375945 TTTATATCTCATTGCAACGCACAT 57.624 33.333 0.00 0.00 38.71 3.21
684 700 5.049060 ACGCACATGCATTGTTCTAGTAAAA 60.049 36.000 0.00 0.00 42.21 1.52
817 838 2.548057 GAGTCAGCGTCAATGTCCAAAA 59.452 45.455 0.00 0.00 0.00 2.44
913 938 0.980423 AGAGAGAAAAGGCCTTCGCT 59.020 50.000 20.79 18.71 38.05 4.93
1212 1240 0.404040 ACGTCATGTTCAACCCCCAT 59.596 50.000 0.00 0.00 0.00 4.00
1308 1336 6.590234 TCTGCCTTCGCATTATAGATTAGA 57.410 37.500 0.00 0.00 46.11 2.10
1403 1431 6.323996 CCTCGAATAGGCCATATCCAAGTATA 59.676 42.308 5.01 0.00 38.97 1.47
1475 1503 5.695816 TGTGCATGTTATCTTTTCTTTTGCC 59.304 36.000 0.00 0.00 0.00 4.52
1661 1849 1.434696 CCTAGCTTGCAATTGGGCG 59.565 57.895 7.72 0.00 36.28 6.13
1833 2021 4.141846 TGAAGCAGAGATTGACCCTATGTC 60.142 45.833 0.00 0.00 44.72 3.06
2145 2339 9.090103 CCAGAGTTTTATATATCCACCACTCTA 57.910 37.037 10.40 0.00 38.11 2.43
2366 2560 3.431572 GCTTCACACTGCTCTTGTCTAAG 59.568 47.826 0.00 0.00 35.16 2.18
2526 2720 4.568359 AGTATGCGACATTGCTTGAACTAG 59.432 41.667 0.00 0.00 35.36 2.57
2632 2826 2.952245 CGGTCCAGAACGTCTCGT 59.048 61.111 0.00 0.00 43.97 4.18
2660 2854 0.874390 TTTCAGGCATTGCAGACGTC 59.126 50.000 7.70 7.70 0.00 4.34
2696 2890 5.581085 GGCGAGATTTGCTAAGAAACTTCTA 59.419 40.000 0.00 0.00 36.28 2.10
2700 2894 7.384439 AGATTTGCTAAGAAACTTCTAAGGC 57.616 36.000 0.00 0.00 36.28 4.35
2712 2906 1.203237 TCTAAGGCCAGCAGCACATA 58.797 50.000 5.01 0.00 46.50 2.29
2713 2907 1.770658 TCTAAGGCCAGCAGCACATAT 59.229 47.619 5.01 0.00 46.50 1.78
2814 3008 1.326548 GTTCTTGTGACAACTCGCGTT 59.673 47.619 5.77 0.00 0.00 4.84
2817 3011 1.855978 CTTGTGACAACTCGCGTTACA 59.144 47.619 5.77 0.00 31.75 2.41
2890 3084 0.965866 AGACGGCATCTCCAAGACGA 60.966 55.000 0.00 0.00 28.16 4.20
3023 3217 0.242825 CAAGTAGTCCGCACGGAGAA 59.757 55.000 12.96 0.17 46.16 2.87
3054 3249 1.131126 CTGCCCGTTTTGTGCTAGATG 59.869 52.381 0.00 0.00 0.00 2.90
3063 3258 5.049680 CGTTTTGTGCTAGATGGTTTAGTGT 60.050 40.000 0.00 0.00 0.00 3.55
3065 3260 6.554334 TTTGTGCTAGATGGTTTAGTGTTC 57.446 37.500 0.00 0.00 0.00 3.18
3069 3264 5.122396 GTGCTAGATGGTTTAGTGTTCCTTG 59.878 44.000 0.00 0.00 0.00 3.61
3128 3337 8.240682 CGTAATTGAAATTGGTCTTAATCACCA 58.759 33.333 2.85 2.85 42.48 4.17
3135 3357 8.650143 AAATTGGTCTTAATCACCATTACTGT 57.350 30.769 7.15 0.00 43.66 3.55
3144 3366 6.683974 AATCACCATTACTGTTGCTGATAC 57.316 37.500 0.00 0.00 0.00 2.24
3280 3745 8.485392 ACAGGTTTTATTTATATGCATTGCCTT 58.515 29.630 3.54 0.00 0.00 4.35
3310 3775 2.079925 GCACTGAATCACTTCTCACCC 58.920 52.381 0.00 0.00 32.29 4.61
3389 3854 3.896888 TGCCAGACAATCTGTTTTCCATT 59.103 39.130 5.18 0.00 42.80 3.16
3393 3858 6.127647 GCCAGACAATCTGTTTTCCATTATGA 60.128 38.462 5.18 0.00 42.80 2.15
3398 3863 9.727627 GACAATCTGTTTTCCATTATGAAGATC 57.272 33.333 0.00 0.00 0.00 2.75
3399 3864 8.689972 ACAATCTGTTTTCCATTATGAAGATCC 58.310 33.333 0.00 0.00 0.00 3.36
3401 3866 8.827832 ATCTGTTTTCCATTATGAAGATCCAA 57.172 30.769 0.00 0.00 0.00 3.53
3477 4007 0.318441 TCGACAGAGAGGCACTTTGG 59.682 55.000 7.35 0.00 41.55 3.28
3507 4037 3.387397 ACTAAAACTGGTGTACGACTGC 58.613 45.455 0.00 0.00 0.00 4.40
3512 4042 3.887621 ACTGGTGTACGACTGCATAAT 57.112 42.857 0.00 0.00 0.00 1.28
3522 4052 2.483714 CGACTGCATAATACTGCCTGGT 60.484 50.000 0.00 0.00 41.58 4.00
3523 4053 3.243737 CGACTGCATAATACTGCCTGGTA 60.244 47.826 0.00 0.00 41.58 3.25
3524 4054 4.310769 GACTGCATAATACTGCCTGGTAG 58.689 47.826 10.48 10.48 41.58 3.18
3546 4076 0.179225 GACATACAAGCAACACGGCG 60.179 55.000 4.80 4.80 39.27 6.46
3612 4152 9.720769 ATTGCACAATTTTGTACTACTACTACT 57.279 29.630 0.00 0.00 39.91 2.57
3628 4168 7.678947 ACTACTACTACTACAAAGCTTCGAA 57.321 36.000 0.00 0.00 0.00 3.71
3656 4196 3.070015 ACGTATATTACCCGGGGAAACTG 59.930 47.826 25.54 14.48 0.00 3.16
3661 4201 0.116940 TACCCGGGGAAACTGGTACT 59.883 55.000 27.92 0.33 44.78 2.73
3662 4202 1.196766 ACCCGGGGAAACTGGTACTC 61.197 60.000 27.92 0.00 44.78 2.59
3663 4203 1.196104 CCCGGGGAAACTGGTACTCA 61.196 60.000 14.71 0.00 44.78 3.41
3664 4204 0.036671 CCGGGGAAACTGGTACTCAC 60.037 60.000 0.00 0.00 41.03 3.51
3665 4205 0.974383 CGGGGAAACTGGTACTCACT 59.026 55.000 0.00 0.00 0.00 3.41
3666 4206 1.067071 CGGGGAAACTGGTACTCACTC 60.067 57.143 0.00 0.00 0.00 3.51
3667 4207 1.278413 GGGGAAACTGGTACTCACTCC 59.722 57.143 0.00 0.00 0.00 3.85
3668 4208 1.067071 GGGAAACTGGTACTCACTCCG 60.067 57.143 0.00 0.00 0.00 4.63
3669 4209 1.617357 GGAAACTGGTACTCACTCCGT 59.383 52.381 0.00 0.00 0.00 4.69
3670 4210 2.036862 GGAAACTGGTACTCACTCCGTT 59.963 50.000 0.00 0.00 0.00 4.44
3671 4211 3.315418 GAAACTGGTACTCACTCCGTTC 58.685 50.000 0.00 0.00 0.00 3.95
3672 4212 1.254954 ACTGGTACTCACTCCGTTCC 58.745 55.000 0.00 0.00 0.00 3.62
3673 4213 1.254026 CTGGTACTCACTCCGTTCCA 58.746 55.000 0.00 0.00 32.07 3.53
3674 4214 1.616865 CTGGTACTCACTCCGTTCCAA 59.383 52.381 0.00 0.00 32.51 3.53
3675 4215 2.036733 CTGGTACTCACTCCGTTCCAAA 59.963 50.000 0.00 0.00 32.51 3.28
3676 4216 2.635915 TGGTACTCACTCCGTTCCAAAT 59.364 45.455 0.00 0.00 30.28 2.32
3677 4217 3.071892 TGGTACTCACTCCGTTCCAAATT 59.928 43.478 0.00 0.00 30.28 1.82
3678 4218 4.283978 TGGTACTCACTCCGTTCCAAATTA 59.716 41.667 0.00 0.00 30.28 1.40
3679 4219 4.628766 GGTACTCACTCCGTTCCAAATTAC 59.371 45.833 0.00 0.00 0.00 1.89
3680 4220 4.618920 ACTCACTCCGTTCCAAATTACT 57.381 40.909 0.00 0.00 0.00 2.24
3681 4221 4.566987 ACTCACTCCGTTCCAAATTACTC 58.433 43.478 0.00 0.00 0.00 2.59
3682 4222 3.581755 TCACTCCGTTCCAAATTACTCG 58.418 45.455 0.00 0.00 0.00 4.18
3683 4223 3.006110 TCACTCCGTTCCAAATTACTCGT 59.994 43.478 0.00 0.00 0.00 4.18
3684 4224 3.367025 CACTCCGTTCCAAATTACTCGTC 59.633 47.826 0.00 0.00 0.00 4.20
3685 4225 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3686 4226 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
3687 4227 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3688 4228 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
3689 4229 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
3690 4230 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3691 4231 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
3692 4232 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
3693 4233 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
3694 4234 4.092821 CCAAATTACTCGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
3695 4235 5.390461 CCAAATTACTCGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
3696 4236 6.250819 CAAATTACTCGTCGCAGAAATGAAT 58.749 36.000 0.00 0.00 39.69 2.57
3697 4237 7.398746 CAAATTACTCGTCGCAGAAATGAATA 58.601 34.615 0.00 0.00 39.69 1.75
3698 4238 7.715265 AATTACTCGTCGCAGAAATGAATAT 57.285 32.000 0.00 0.00 39.69 1.28
3699 4239 8.812147 AATTACTCGTCGCAGAAATGAATATA 57.188 30.769 0.00 0.00 39.69 0.86
3700 4240 8.988064 ATTACTCGTCGCAGAAATGAATATAT 57.012 30.769 0.00 0.00 39.69 0.86
3701 4241 6.936222 ACTCGTCGCAGAAATGAATATATC 57.064 37.500 0.00 0.00 39.69 1.63
3702 4242 6.682746 ACTCGTCGCAGAAATGAATATATCT 58.317 36.000 0.00 0.00 39.69 1.98
3703 4243 7.817641 ACTCGTCGCAGAAATGAATATATCTA 58.182 34.615 0.00 0.00 39.69 1.98
3704 4244 7.965655 ACTCGTCGCAGAAATGAATATATCTAG 59.034 37.037 0.00 0.00 39.69 2.43
3705 4245 8.040716 TCGTCGCAGAAATGAATATATCTAGA 57.959 34.615 0.00 0.00 39.69 2.43
3706 4246 8.512138 TCGTCGCAGAAATGAATATATCTAGAA 58.488 33.333 0.00 0.00 39.69 2.10
3707 4247 8.579600 CGTCGCAGAAATGAATATATCTAGAAC 58.420 37.037 0.00 0.00 39.69 3.01
3708 4248 9.632807 GTCGCAGAAATGAATATATCTAGAACT 57.367 33.333 0.00 0.00 39.69 3.01
3745 4285 0.609131 AAAGGGGGCAATGTCTCGTG 60.609 55.000 0.00 0.00 0.00 4.35
3759 4299 6.963049 ATGTCTCGTGGTACAATTTTAGTC 57.037 37.500 0.00 0.00 44.16 2.59
3933 4479 4.634703 TCACCGGCGTGCCATGTT 62.635 61.111 12.06 0.00 40.04 2.71
3934 4480 4.101790 CACCGGCGTGCCATGTTC 62.102 66.667 12.06 0.00 35.37 3.18
3937 4483 4.147322 CGGCGTGCCATGTTCGTC 62.147 66.667 12.06 0.00 35.37 4.20
3938 4484 4.147322 GGCGTGCCATGTTCGTCG 62.147 66.667 5.89 0.00 35.81 5.12
3939 4485 4.794241 GCGTGCCATGTTCGTCGC 62.794 66.667 0.00 0.00 37.17 5.19
3940 4486 3.112075 CGTGCCATGTTCGTCGCT 61.112 61.111 0.00 0.00 0.00 4.93
3941 4487 2.476051 GTGCCATGTTCGTCGCTG 59.524 61.111 0.00 0.00 0.00 5.18
3942 4488 2.741985 TGCCATGTTCGTCGCTGG 60.742 61.111 0.00 0.00 0.00 4.85
3943 4489 4.166011 GCCATGTTCGTCGCTGGC 62.166 66.667 10.66 10.66 46.54 4.85
3944 4490 3.499737 CCATGTTCGTCGCTGGCC 61.500 66.667 0.00 0.00 0.00 5.36
3945 4491 3.853330 CATGTTCGTCGCTGGCCG 61.853 66.667 0.00 0.00 38.61 6.13
3946 4492 4.373116 ATGTTCGTCGCTGGCCGT 62.373 61.111 0.00 0.00 38.35 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.140407 CTCGCGGGATTCGTTCAGAC 61.140 60.000 0.00 0.00 41.72 3.51
39 40 1.138883 CTCGCGGGATTCGTTCAGA 59.861 57.895 0.00 0.00 41.72 3.27
40 41 0.249073 ATCTCGCGGGATTCGTTCAG 60.249 55.000 17.66 0.00 41.72 3.02
41 42 0.248907 GATCTCGCGGGATTCGTTCA 60.249 55.000 24.71 0.00 41.72 3.18
75 79 0.683179 ATCATCGGAGGACGTGTGGA 60.683 55.000 0.00 0.00 44.69 4.02
76 80 0.528466 CATCATCGGAGGACGTGTGG 60.528 60.000 0.00 0.00 44.69 4.17
78 82 1.141881 GCATCATCGGAGGACGTGT 59.858 57.895 0.00 0.00 44.69 4.49
79 83 0.668535 TAGCATCATCGGAGGACGTG 59.331 55.000 0.00 0.00 44.69 4.49
80 84 0.955178 CTAGCATCATCGGAGGACGT 59.045 55.000 0.00 0.00 44.69 4.34
81 85 1.239347 TCTAGCATCATCGGAGGACG 58.761 55.000 0.00 0.00 46.11 4.79
82 86 3.181475 TGTTTCTAGCATCATCGGAGGAC 60.181 47.826 0.00 0.00 0.00 3.85
83 87 3.031013 TGTTTCTAGCATCATCGGAGGA 58.969 45.455 0.00 0.00 0.00 3.71
84 88 3.126831 GTGTTTCTAGCATCATCGGAGG 58.873 50.000 0.00 0.00 0.00 4.30
109 113 6.771934 TCTCTCCATCTAGTCTCCATTCTA 57.228 41.667 0.00 0.00 0.00 2.10
110 114 5.661503 TCTCTCCATCTAGTCTCCATTCT 57.338 43.478 0.00 0.00 0.00 2.40
116 120 7.039993 GGAATAAGGTTCTCTCCATCTAGTCTC 60.040 44.444 0.00 0.00 0.00 3.36
155 159 1.004918 AAAGTCGAGGTGAAGGCGG 60.005 57.895 0.00 0.00 0.00 6.13
160 164 1.686587 TGCTCAGAAAGTCGAGGTGAA 59.313 47.619 0.00 0.00 0.00 3.18
163 167 0.605589 CCTGCTCAGAAAGTCGAGGT 59.394 55.000 0.00 0.00 0.00 3.85
179 183 6.488683 TGAGTTTTGTTAGGGTTTATGTCCTG 59.511 38.462 0.00 0.00 34.75 3.86
201 205 7.750903 GTCTCCGGTTTTTCATAATTTCTTGAG 59.249 37.037 0.00 0.00 0.00 3.02
210 214 3.946606 GGAGGTCTCCGGTTTTTCATAA 58.053 45.455 0.00 0.00 40.36 1.90
211 215 3.622166 GGAGGTCTCCGGTTTTTCATA 57.378 47.619 0.00 0.00 40.36 2.15
226 230 3.260100 CCCTTGCTGGTGGGAGGT 61.260 66.667 0.00 0.00 46.15 3.85
227 231 3.260100 ACCCTTGCTGGTGGGAGG 61.260 66.667 4.93 0.00 46.15 4.30
233 237 0.693049 AGATTTCGACCCTTGCTGGT 59.307 50.000 0.00 0.00 42.79 4.00
236 240 2.803492 GCGATAGATTTCGACCCTTGCT 60.803 50.000 0.00 0.00 41.62 3.91
247 251 1.229428 CATGGTGGCGCGATAGATTT 58.771 50.000 12.10 0.00 39.76 2.17
248 252 0.603707 CCATGGTGGCGCGATAGATT 60.604 55.000 12.10 0.00 39.76 2.40
281 285 1.376543 CGCCAGTCTACCTCGTCTTA 58.623 55.000 0.00 0.00 0.00 2.10
287 291 2.496817 CTGCCGCCAGTCTACCTC 59.503 66.667 0.00 0.00 34.31 3.85
290 294 2.815647 GTGCTGCCGCCAGTCTAC 60.816 66.667 0.00 0.00 41.26 2.59
297 301 4.865761 TATCGTCGTGCTGCCGCC 62.866 66.667 0.00 0.00 34.43 6.13
298 302 3.323136 CTATCGTCGTGCTGCCGC 61.323 66.667 0.00 0.00 0.00 6.53
300 304 2.962253 GCCTATCGTCGTGCTGCC 60.962 66.667 0.00 0.00 0.00 4.85
303 307 2.102357 CGTGCCTATCGTCGTGCT 59.898 61.111 0.00 0.00 0.00 4.40
305 309 0.098200 TTCTCGTGCCTATCGTCGTG 59.902 55.000 0.00 0.00 0.00 4.35
307 311 1.189403 GTTTCTCGTGCCTATCGTCG 58.811 55.000 0.00 0.00 0.00 5.12
309 313 0.179145 CGGTTTCTCGTGCCTATCGT 60.179 55.000 0.00 0.00 0.00 3.73
310 314 0.179145 ACGGTTTCTCGTGCCTATCG 60.179 55.000 0.00 0.00 42.21 2.92
311 315 2.728922 CTACGGTTTCTCGTGCCTATC 58.271 52.381 0.00 0.00 43.70 2.08
312 316 1.202382 GCTACGGTTTCTCGTGCCTAT 60.202 52.381 0.00 0.00 43.70 2.57
313 317 0.171903 GCTACGGTTTCTCGTGCCTA 59.828 55.000 0.00 0.00 43.70 3.93
328 332 4.479786 AGAAAGAGAACCATCTGGCTAC 57.520 45.455 0.00 0.00 39.32 3.58
335 339 5.374898 CGTTTTCGAAGAAAGAGAACCATC 58.625 41.667 0.00 0.00 45.90 3.51
370 386 9.817809 GTAGAGATAAAAACTACATCATCCACA 57.182 33.333 0.00 0.00 37.17 4.17
401 417 8.061237 TGAGAATCTAATGGGAACCTTACGTTG 61.061 40.741 0.00 0.00 44.30 4.10
419 435 7.390162 GTGAGAAGAAAGGTGAAATGAGAATCT 59.610 37.037 0.00 0.00 34.92 2.40
420 436 7.390162 AGTGAGAAGAAAGGTGAAATGAGAATC 59.610 37.037 0.00 0.00 0.00 2.52
422 438 6.595682 AGTGAGAAGAAAGGTGAAATGAGAA 58.404 36.000 0.00 0.00 0.00 2.87
423 439 6.179906 AGTGAGAAGAAAGGTGAAATGAGA 57.820 37.500 0.00 0.00 0.00 3.27
424 440 7.279758 GGATAGTGAGAAGAAAGGTGAAATGAG 59.720 40.741 0.00 0.00 0.00 2.90
425 441 7.106239 GGATAGTGAGAAGAAAGGTGAAATGA 58.894 38.462 0.00 0.00 0.00 2.57
426 442 6.317391 GGGATAGTGAGAAGAAAGGTGAAATG 59.683 42.308 0.00 0.00 0.00 2.32
427 443 6.216456 AGGGATAGTGAGAAGAAAGGTGAAAT 59.784 38.462 0.00 0.00 0.00 2.17
428 444 5.548056 AGGGATAGTGAGAAGAAAGGTGAAA 59.452 40.000 0.00 0.00 0.00 2.69
429 445 5.094387 AGGGATAGTGAGAAGAAAGGTGAA 58.906 41.667 0.00 0.00 0.00 3.18
430 446 4.689062 AGGGATAGTGAGAAGAAAGGTGA 58.311 43.478 0.00 0.00 0.00 4.02
431 447 5.423886 GAAGGGATAGTGAGAAGAAAGGTG 58.576 45.833 0.00 0.00 0.00 4.00
432 448 4.160626 CGAAGGGATAGTGAGAAGAAAGGT 59.839 45.833 0.00 0.00 0.00 3.50
433 449 4.160626 ACGAAGGGATAGTGAGAAGAAAGG 59.839 45.833 0.00 0.00 0.00 3.11
434 450 5.331876 ACGAAGGGATAGTGAGAAGAAAG 57.668 43.478 0.00 0.00 0.00 2.62
435 451 4.159879 GGACGAAGGGATAGTGAGAAGAAA 59.840 45.833 0.00 0.00 0.00 2.52
442 458 1.829222 GGTTGGACGAAGGGATAGTGA 59.171 52.381 0.00 0.00 0.00 3.41
448 464 1.133363 TGAAAGGTTGGACGAAGGGA 58.867 50.000 0.00 0.00 0.00 4.20
450 466 2.504367 ACATGAAAGGTTGGACGAAGG 58.496 47.619 0.00 0.00 0.00 3.46
516 532 9.981114 AGAAATTTGGTAAGTAAATCAAAGTGG 57.019 29.630 0.00 0.00 33.45 4.00
639 655 9.398170 GTGCGTTGCAATGAGATATAAATATTT 57.602 29.630 22.81 5.89 41.47 1.40
652 668 1.658673 TGCATGTGCGTTGCAATGA 59.341 47.368 22.81 1.64 46.48 2.57
661 677 4.598406 TTACTAGAACAATGCATGTGCG 57.402 40.909 0.00 0.00 43.05 5.34
817 838 4.647424 TTCTTTGGCAAGAAAACATCGT 57.353 36.364 0.00 0.00 44.56 3.73
883 908 4.094739 GCCTTTTCTCTCTTCAGATTCAGC 59.905 45.833 0.00 0.00 0.00 4.26
913 938 9.621629 TTTTTCTTACTGACAAGACAATCCTTA 57.378 29.630 0.00 0.00 34.31 2.69
1308 1336 6.205658 GCTTCAGACCTTTCTCTTGTAAATGT 59.794 38.462 0.00 0.00 0.00 2.71
1475 1503 7.493320 CCAACTGAATCCAAACATAATTCCATG 59.507 37.037 0.00 0.00 0.00 3.66
1642 1830 1.142531 GCCCAATTGCAAGCTAGGC 59.857 57.895 14.44 14.44 0.00 3.93
1833 2021 7.171630 AGTGAGTCCCTAAACTTGTATACAG 57.828 40.000 5.56 3.51 0.00 2.74
2150 2344 8.286800 TGCAACAATGTTCATAACTGTTAGTAC 58.713 33.333 6.40 4.87 31.19 2.73
2151 2345 8.384607 TGCAACAATGTTCATAACTGTTAGTA 57.615 30.769 6.40 0.00 31.19 1.82
2152 2346 7.013274 ACTGCAACAATGTTCATAACTGTTAGT 59.987 33.333 6.40 0.00 31.19 2.24
2153 2347 7.362662 ACTGCAACAATGTTCATAACTGTTAG 58.637 34.615 6.40 0.00 31.19 2.34
2300 2494 0.387622 CCACCATGCAAGCAAACTCG 60.388 55.000 0.00 0.00 0.00 4.18
2511 2705 5.135508 ACGAGTACTAGTTCAAGCAATGT 57.864 39.130 0.00 0.00 0.00 2.71
2526 2720 3.309954 GGATTGAAAGCATGGACGAGTAC 59.690 47.826 0.00 0.00 0.00 2.73
2555 2749 3.059461 CACCAACATTGCAAATCAAGTGC 60.059 43.478 1.71 0.00 42.55 4.40
2606 2800 1.837051 TTCTGGACCGTGCCTCAGT 60.837 57.895 0.00 0.00 0.00 3.41
2627 2821 3.007506 TGCCTGAAAACATAGGAACGAGA 59.992 43.478 0.00 0.00 36.11 4.04
2632 2826 3.831333 TGCAATGCCTGAAAACATAGGAA 59.169 39.130 1.53 0.00 36.11 3.36
2696 2890 1.396653 GAATATGTGCTGCTGGCCTT 58.603 50.000 3.32 0.00 40.92 4.35
2700 2894 1.168407 CCCCGAATATGTGCTGCTGG 61.168 60.000 0.00 0.00 0.00 4.85
2712 2906 2.670148 GGACACTGCTCCCCCGAAT 61.670 63.158 0.00 0.00 0.00 3.34
2713 2907 3.319198 GGACACTGCTCCCCCGAA 61.319 66.667 0.00 0.00 0.00 4.30
2828 3022 1.079612 CGGAGTGCTGCACATCTCA 60.080 57.895 31.90 0.00 36.74 3.27
2890 3084 2.037772 ACTGAGAGCTCGTTGTTTCCAT 59.962 45.455 8.37 0.00 0.00 3.41
3054 3249 4.454847 GCTAGAACCAAGGAACACTAAACC 59.545 45.833 0.00 0.00 0.00 3.27
3063 3258 9.778741 CATATAACTAATGCTAGAACCAAGGAA 57.221 33.333 0.00 0.00 0.00 3.36
3065 3260 8.993121 CACATATAACTAATGCTAGAACCAAGG 58.007 37.037 0.00 0.00 0.00 3.61
3069 3264 9.726438 ATTCCACATATAACTAATGCTAGAACC 57.274 33.333 0.00 0.00 0.00 3.62
3108 3317 8.739039 CAGTAATGGTGATTAAGACCAATTTCA 58.261 33.333 12.03 0.00 46.57 2.69
3135 3357 7.824289 AGCTAAAGAACATAACTGTATCAGCAA 59.176 33.333 0.00 0.00 33.36 3.91
3280 3745 2.028658 GTGATTCAGTGCTCCTCTCACA 60.029 50.000 0.00 0.00 36.93 3.58
3310 3775 3.571828 AGGTCTCACATATCGGACAGATG 59.428 47.826 0.00 0.00 40.40 2.90
3389 3854 6.012745 TGAGATCGATCCTTGGATCTTCATA 58.987 40.000 21.66 11.88 44.57 2.15
3393 3858 4.222336 AGTGAGATCGATCCTTGGATCTT 58.778 43.478 21.66 12.84 44.57 2.40
3398 3863 2.208431 GCAAGTGAGATCGATCCTTGG 58.792 52.381 28.68 17.99 34.51 3.61
3399 3864 2.897436 TGCAAGTGAGATCGATCCTTG 58.103 47.619 26.01 26.01 36.47 3.61
3401 3866 3.305950 GCTATGCAAGTGAGATCGATCCT 60.306 47.826 21.66 9.21 0.00 3.24
3477 4007 4.711399 ACACCAGTTTTAGTAACTCCCAC 58.289 43.478 0.00 0.00 0.00 4.61
3507 4037 6.650427 TGTCTACTACCAGGCAGTATTATG 57.350 41.667 0.00 0.00 0.00 1.90
3512 4042 5.120054 TGTATGTCTACTACCAGGCAGTA 57.880 43.478 0.00 0.00 32.72 2.74
3522 4052 4.740268 CCGTGTTGCTTGTATGTCTACTA 58.260 43.478 0.00 0.00 0.00 1.82
3523 4053 3.585862 CCGTGTTGCTTGTATGTCTACT 58.414 45.455 0.00 0.00 0.00 2.57
3524 4054 2.093783 GCCGTGTTGCTTGTATGTCTAC 59.906 50.000 0.00 0.00 0.00 2.59
3546 4076 3.620488 TGAAACCATAGCCAGAATCCAC 58.380 45.455 0.00 0.00 0.00 4.02
3607 4147 6.812160 CCAATTCGAAGCTTTGTAGTAGTAGT 59.188 38.462 13.49 0.00 0.00 2.73
3608 4148 6.812160 ACCAATTCGAAGCTTTGTAGTAGTAG 59.188 38.462 13.49 0.09 0.00 2.57
3609 4149 6.694447 ACCAATTCGAAGCTTTGTAGTAGTA 58.306 36.000 13.49 0.00 0.00 1.82
3610 4150 5.548406 ACCAATTCGAAGCTTTGTAGTAGT 58.452 37.500 13.49 0.00 0.00 2.73
3611 4151 6.237490 CGTACCAATTCGAAGCTTTGTAGTAG 60.237 42.308 13.49 0.00 0.00 2.57
3612 4152 5.574055 CGTACCAATTCGAAGCTTTGTAGTA 59.426 40.000 13.49 6.74 0.00 1.82
3613 4153 4.387862 CGTACCAATTCGAAGCTTTGTAGT 59.612 41.667 13.49 0.20 0.00 2.73
3628 4168 3.515104 CCCCGGGTAATATACGTACCAAT 59.485 47.826 21.85 0.00 42.51 3.16
3656 4196 2.825861 TTTGGAACGGAGTGAGTACC 57.174 50.000 0.00 0.00 45.00 3.34
3661 4201 3.006110 ACGAGTAATTTGGAACGGAGTGA 59.994 43.478 0.00 0.00 45.00 3.41
3662 4202 3.323243 ACGAGTAATTTGGAACGGAGTG 58.677 45.455 0.00 0.00 45.00 3.51
3664 4204 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3665 4205 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
3666 4206 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
3667 4207 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3668 4208 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
3669 4209 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
3670 4210 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
3671 4211 4.092821 TCATTTCTGCGACGAGTAATTTGG 59.907 41.667 0.00 0.00 0.00 3.28
3672 4212 5.203358 TCATTTCTGCGACGAGTAATTTG 57.797 39.130 0.00 0.00 0.00 2.32
3673 4213 5.856126 TTCATTTCTGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
3674 4214 7.715265 ATATTCATTTCTGCGACGAGTAATT 57.285 32.000 0.00 0.00 0.00 1.40
3675 4215 8.988064 ATATATTCATTTCTGCGACGAGTAAT 57.012 30.769 0.00 0.00 0.00 1.89
3676 4216 8.297426 AGATATATTCATTTCTGCGACGAGTAA 58.703 33.333 0.00 0.00 0.00 2.24
3677 4217 7.817641 AGATATATTCATTTCTGCGACGAGTA 58.182 34.615 0.00 0.00 0.00 2.59
3678 4218 6.682746 AGATATATTCATTTCTGCGACGAGT 58.317 36.000 0.00 0.00 0.00 4.18
3679 4219 8.178313 TCTAGATATATTCATTTCTGCGACGAG 58.822 37.037 0.00 0.00 0.00 4.18
3680 4220 8.040716 TCTAGATATATTCATTTCTGCGACGA 57.959 34.615 0.00 0.00 0.00 4.20
3681 4221 8.579600 GTTCTAGATATATTCATTTCTGCGACG 58.420 37.037 0.00 0.00 0.00 5.12
3682 4222 9.632807 AGTTCTAGATATATTCATTTCTGCGAC 57.367 33.333 0.00 0.00 0.00 5.19
3699 4239 8.578151 GGGACGAGATGTATTTTAGTTCTAGAT 58.422 37.037 0.00 0.00 0.00 1.98
3700 4240 7.558807 TGGGACGAGATGTATTTTAGTTCTAGA 59.441 37.037 0.00 0.00 0.00 2.43
3701 4241 7.713750 TGGGACGAGATGTATTTTAGTTCTAG 58.286 38.462 0.00 0.00 0.00 2.43
3702 4242 7.649533 TGGGACGAGATGTATTTTAGTTCTA 57.350 36.000 0.00 0.00 0.00 2.10
3703 4243 6.540438 TGGGACGAGATGTATTTTAGTTCT 57.460 37.500 0.00 0.00 0.00 3.01
3704 4244 7.201617 CCTTTGGGACGAGATGTATTTTAGTTC 60.202 40.741 0.00 0.00 33.58 3.01
3705 4245 6.598064 CCTTTGGGACGAGATGTATTTTAGTT 59.402 38.462 0.00 0.00 33.58 2.24
3706 4246 6.113411 CCTTTGGGACGAGATGTATTTTAGT 58.887 40.000 0.00 0.00 33.58 2.24
3707 4247 6.604735 CCTTTGGGACGAGATGTATTTTAG 57.395 41.667 0.00 0.00 33.58 1.85
3745 4285 5.310451 TGGGTGTGAGACTAAAATTGTACC 58.690 41.667 0.00 0.00 0.00 3.34
3924 4470 2.476051 CAGCGACGAACATGGCAC 59.524 61.111 0.00 0.00 0.00 5.01
3925 4471 2.741985 CCAGCGACGAACATGGCA 60.742 61.111 0.00 0.00 0.00 4.92
3927 4473 3.499737 GGCCAGCGACGAACATGG 61.500 66.667 0.00 1.56 35.84 3.66
3928 4474 3.853330 CGGCCAGCGACGAACATG 61.853 66.667 2.24 0.00 0.00 3.21
3929 4475 4.373116 ACGGCCAGCGACGAACAT 62.373 61.111 2.24 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.