Multiple sequence alignment - TraesCS3A01G181700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G181700 chr3A 100.000 2449 0 0 1 2449 210126905 210124457 0.000000e+00 4523.0
1 TraesCS3A01G181700 chr7B 99.271 2059 13 1 1 2059 13054139 13052083 0.000000e+00 3718.0
2 TraesCS3A01G181700 chr7B 98.466 1499 21 1 1 1499 204459306 204460802 0.000000e+00 2639.0
3 TraesCS3A01G181700 chr7B 97.444 665 12 2 1565 2225 204460784 204461447 0.000000e+00 1129.0
4 TraesCS3A01G181700 chr3B 99.600 1499 4 1 1 1499 689987805 689986309 0.000000e+00 2734.0
5 TraesCS3A01G181700 chr3B 98.036 560 10 1 1563 2122 689986329 689985771 0.000000e+00 972.0
6 TraesCS3A01G181700 chr3B 93.514 185 12 0 2222 2406 250793936 250793752 2.400000e-70 276.0
7 TraesCS3A01G181700 chr3B 87.500 192 21 3 2212 2403 174120159 174120347 4.100000e-53 219.0
8 TraesCS3A01G181700 chr3B 98.305 59 1 0 1504 1562 479903667 479903609 1.200000e-18 104.0
9 TraesCS3A01G181700 chr3B 98.305 59 1 0 1504 1562 729209866 729209924 1.200000e-18 104.0
10 TraesCS3A01G181700 chr3B 90.164 61 4 2 2163 2222 241348816 241348875 7.260000e-11 78.7
11 TraesCS3A01G181700 chr2A 99.533 1499 5 1 1 1499 682560613 682559117 0.000000e+00 2728.0
12 TraesCS3A01G181700 chr2A 98.731 1497 16 2 1 1497 509973526 509972033 0.000000e+00 2656.0
13 TraesCS3A01G181700 chr2A 98.255 573 7 3 1563 2134 682559137 682558567 0.000000e+00 1000.0
14 TraesCS3A01G181700 chr2A 97.409 579 14 1 1563 2141 509972051 509971474 0.000000e+00 985.0
15 TraesCS3A01G181700 chr2A 98.305 59 1 0 1504 1562 28827446 28827388 1.200000e-18 104.0
16 TraesCS3A01G181700 chr2A 100.000 52 0 0 2174 2225 509971483 509971432 2.000000e-16 97.1
17 TraesCS3A01G181700 chr1B 99.199 1499 10 1 1 1499 222287284 222285788 0.000000e+00 2700.0
18 TraesCS3A01G181700 chr1B 97.942 583 11 1 1563 2145 222285808 222285227 0.000000e+00 1009.0
19 TraesCS3A01G181700 chr1B 98.305 59 1 0 1504 1562 159633597 159633539 1.200000e-18 104.0
20 TraesCS3A01G181700 chr1B 100.000 56 0 0 2170 2225 222285240 222285185 1.200000e-18 104.0
21 TraesCS3A01G181700 chr1B 95.312 64 2 1 1500 1563 626243745 626243807 1.550000e-17 100.0
22 TraesCS3A01G181700 chr1D 84.243 641 81 13 865 1496 440875019 440875648 7.490000e-170 606.0
23 TraesCS3A01G181700 chr1D 91.429 105 8 1 377 480 395982528 395982424 2.540000e-30 143.0
24 TraesCS3A01G181700 chr4D 83.008 665 91 13 841 1496 278289227 278289878 1.260000e-162 582.0
25 TraesCS3A01G181700 chr4D 88.360 189 19 3 2215 2403 497263292 497263477 8.810000e-55 224.0
26 TraesCS3A01G181700 chr4D 97.872 47 1 0 2403 2449 266953141 266953187 5.610000e-12 82.4
27 TraesCS3A01G181700 chr1A 82.946 645 89 14 865 1499 537147174 537146541 1.640000e-156 562.0
28 TraesCS3A01G181700 chr1A 92.233 103 7 1 378 479 213454634 213454736 7.060000e-31 145.0
29 TraesCS3A01G181700 chr7D 88.710 186 20 1 2222 2406 371272860 371272675 2.450000e-55 226.0
30 TraesCS3A01G181700 chr7D 86.667 195 19 7 2212 2403 12874182 12874372 2.470000e-50 209.0
31 TraesCS3A01G181700 chr7D 86.458 192 22 3 2212 2403 629440900 629441087 8.880000e-50 207.0
32 TraesCS3A01G181700 chr7D 92.381 105 7 1 377 480 19247902 19247798 5.460000e-32 148.0
33 TraesCS3A01G181700 chr7D 97.917 48 1 0 2402 2449 384446493 384446446 1.560000e-12 84.2
34 TraesCS3A01G181700 chr6D 88.398 181 19 2 2224 2403 355888395 355888574 1.470000e-52 217.0
35 TraesCS3A01G181700 chr6D 91.509 106 8 1 377 481 296691512 296691407 7.060000e-31 145.0
36 TraesCS3A01G181700 chr6D 91.429 105 8 1 377 480 255024656 255024552 2.540000e-30 143.0
37 TraesCS3A01G181700 chr6D 91.346 104 8 1 378 480 37415791 37415688 9.130000e-30 141.0
38 TraesCS3A01G181700 chr6D 96.226 53 0 2 2175 2226 366997786 366997735 4.340000e-13 86.1
39 TraesCS3A01G181700 chr7A 86.010 193 24 3 2212 2403 414171500 414171690 1.150000e-48 204.0
40 TraesCS3A01G181700 chr7A 93.269 104 6 1 377 479 438212918 438212815 4.220000e-33 152.0
41 TraesCS3A01G181700 chr7A 90.625 64 4 2 2165 2228 61779303 61779242 1.560000e-12 84.2
42 TraesCS3A01G181700 chr5A 86.559 186 24 1 2222 2406 591622014 591621829 1.150000e-48 204.0
43 TraesCS3A01G181700 chr5A 94.231 104 5 1 377 479 460411016 460410913 9.070000e-35 158.0
44 TraesCS3A01G181700 chr5A 98.333 60 1 0 1504 1563 515082014 515081955 3.330000e-19 106.0
45 TraesCS3A01G181700 chr4A 94.231 104 5 1 377 479 146663888 146663785 9.070000e-35 158.0
46 TraesCS3A01G181700 chr4A 95.238 63 3 0 1504 1566 115566436 115566498 1.550000e-17 100.0
47 TraesCS3A01G181700 chr6A 92.523 107 7 1 378 483 601004505 601004611 4.220000e-33 152.0
48 TraesCS3A01G181700 chr6A 92.453 106 7 1 377 481 423315867 423315762 1.520000e-32 150.0
49 TraesCS3A01G181700 chr5D 92.308 104 7 1 377 479 80369649 80369546 1.960000e-31 147.0
50 TraesCS3A01G181700 chr4B 92.308 104 7 1 377 479 671670428 671670325 1.960000e-31 147.0
51 TraesCS3A01G181700 chr6B 98.305 59 1 0 1504 1562 187832433 187832491 1.200000e-18 104.0
52 TraesCS3A01G181700 chr6B 97.959 49 1 0 2177 2225 460917422 460917374 4.340000e-13 86.1
53 TraesCS3A01G181700 chr2D 96.154 52 1 1 2175 2226 476916341 476916291 1.560000e-12 84.2
54 TraesCS3A01G181700 chr3D 91.667 60 1 3 2177 2236 148337583 148337528 2.020000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G181700 chr3A 210124457 210126905 2448 True 4523.000000 4523 100.000000 1 2449 1 chr3A.!!$R1 2448
1 TraesCS3A01G181700 chr7B 13052083 13054139 2056 True 3718.000000 3718 99.271000 1 2059 1 chr7B.!!$R1 2058
2 TraesCS3A01G181700 chr7B 204459306 204461447 2141 False 1884.000000 2639 97.955000 1 2225 2 chr7B.!!$F1 2224
3 TraesCS3A01G181700 chr3B 689985771 689987805 2034 True 1853.000000 2734 98.818000 1 2122 2 chr3B.!!$R3 2121
4 TraesCS3A01G181700 chr2A 682558567 682560613 2046 True 1864.000000 2728 98.894000 1 2134 2 chr2A.!!$R3 2133
5 TraesCS3A01G181700 chr2A 509971432 509973526 2094 True 1246.033333 2656 98.713333 1 2225 3 chr2A.!!$R2 2224
6 TraesCS3A01G181700 chr1B 222285185 222287284 2099 True 1271.000000 2700 99.047000 1 2225 3 chr1B.!!$R2 2224
7 TraesCS3A01G181700 chr1D 440875019 440875648 629 False 606.000000 606 84.243000 865 1496 1 chr1D.!!$F1 631
8 TraesCS3A01G181700 chr4D 278289227 278289878 651 False 582.000000 582 83.008000 841 1496 1 chr4D.!!$F2 655
9 TraesCS3A01G181700 chr1A 537146541 537147174 633 True 562.000000 562 82.946000 865 1499 1 chr1A.!!$R1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 950 6.289064 ACAAGAAAGTTCTTATCAAGTCCGT 58.711 36.0 5.99 0.0 45.23 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2401 2506 0.25361 CCCGTTTGGCCAGGTATACA 59.746 55.0 5.11 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
573 574 6.884187 GTCTACGTGACAGCTTTCAATAAAA 58.116 36.000 3.65 0.00 44.73 1.52
574 575 7.349711 GTCTACGTGACAGCTTTCAATAAAAA 58.650 34.615 3.65 0.00 44.73 1.94
948 950 6.289064 ACAAGAAAGTTCTTATCAAGTCCGT 58.711 36.000 5.99 0.00 45.23 4.69
1495 1591 8.738106 TGTTGATACAAAGCAATATTCATGTGA 58.262 29.630 0.00 0.00 32.78 3.58
1496 1592 9.229784 GTTGATACAAAGCAATATTCATGTGAG 57.770 33.333 0.00 0.00 32.78 3.51
1497 1593 7.933396 TGATACAAAGCAATATTCATGTGAGG 58.067 34.615 0.00 0.00 0.00 3.86
1498 1594 5.002464 ACAAAGCAATATTCATGTGAGGC 57.998 39.130 0.00 0.00 0.00 4.70
1499 1595 4.463539 ACAAAGCAATATTCATGTGAGGCA 59.536 37.500 0.00 0.00 0.00 4.75
1500 1596 5.128171 ACAAAGCAATATTCATGTGAGGCAT 59.872 36.000 0.00 0.00 38.60 4.40
1508 1604 2.391226 ATGTGAGGCATGTGACCCT 58.609 52.632 0.00 0.00 36.26 4.34
1509 1605 0.700564 ATGTGAGGCATGTGACCCTT 59.299 50.000 0.00 0.00 36.26 3.95
1510 1606 0.036732 TGTGAGGCATGTGACCCTTC 59.963 55.000 0.00 0.00 0.00 3.46
1511 1607 0.678048 GTGAGGCATGTGACCCTTCC 60.678 60.000 0.00 0.00 0.00 3.46
1512 1608 1.077429 GAGGCATGTGACCCTTCCC 60.077 63.158 0.00 0.00 0.00 3.97
1513 1609 2.043953 GGCATGTGACCCTTCCCC 60.044 66.667 0.00 0.00 0.00 4.81
1514 1610 2.763215 GCATGTGACCCTTCCCCA 59.237 61.111 0.00 0.00 0.00 4.96
1515 1611 1.379044 GCATGTGACCCTTCCCCAG 60.379 63.158 0.00 0.00 0.00 4.45
1516 1612 1.852157 GCATGTGACCCTTCCCCAGA 61.852 60.000 0.00 0.00 0.00 3.86
1517 1613 0.035056 CATGTGACCCTTCCCCAGAC 60.035 60.000 0.00 0.00 0.00 3.51
1518 1614 1.208165 ATGTGACCCTTCCCCAGACC 61.208 60.000 0.00 0.00 0.00 3.85
1519 1615 2.204090 TGACCCTTCCCCAGACCC 60.204 66.667 0.00 0.00 0.00 4.46
1520 1616 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1521 1617 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1522 1618 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1523 1619 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1524 1620 3.322466 CTTCCCCAGACCCTGCGT 61.322 66.667 0.00 0.00 0.00 5.24
1525 1621 1.987855 CTTCCCCAGACCCTGCGTA 60.988 63.158 0.00 0.00 0.00 4.42
1526 1622 1.536907 TTCCCCAGACCCTGCGTAA 60.537 57.895 0.00 0.00 0.00 3.18
1527 1623 1.550130 TTCCCCAGACCCTGCGTAAG 61.550 60.000 0.00 0.00 43.44 2.34
1545 1641 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
1546 1642 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
1547 1643 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
1548 1644 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
1549 1645 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
1550 1646 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
1551 1647 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
1552 1648 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
1553 1649 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
1577 1673 6.888105 CCCCCTTTTAAAGCAATATTCATGT 58.112 36.000 0.00 0.00 0.00 3.21
1578 1674 6.762661 CCCCCTTTTAAAGCAATATTCATGTG 59.237 38.462 0.00 0.00 0.00 3.21
1659 1755 4.839121 TGGGCGAGTATTTTACAAGTCAT 58.161 39.130 0.00 0.00 0.00 3.06
1977 2073 2.621407 CCCAACTCTACCCATGCAACAT 60.621 50.000 0.00 0.00 0.00 2.71
2130 2227 7.229306 ACATGACATTGTTGTTGAGTTACTCAT 59.771 33.333 16.28 0.00 40.39 2.90
2225 2330 3.364764 GCACGGGCGTTCTACTAGTATAG 60.365 52.174 2.33 0.00 46.50 1.31
2226 2331 4.060900 CACGGGCGTTCTACTAGTATAGA 58.939 47.826 2.33 0.00 42.77 1.98
2227 2332 4.152045 CACGGGCGTTCTACTAGTATAGAG 59.848 50.000 2.33 0.00 42.77 2.43
2228 2333 3.683822 CGGGCGTTCTACTAGTATAGAGG 59.316 52.174 2.33 0.18 42.77 3.69
2229 2334 4.009002 GGGCGTTCTACTAGTATAGAGGG 58.991 52.174 2.33 0.00 42.77 4.30
2230 2335 4.506448 GGGCGTTCTACTAGTATAGAGGGT 60.506 50.000 2.33 0.00 42.77 4.34
2231 2336 5.069318 GGCGTTCTACTAGTATAGAGGGTT 58.931 45.833 2.33 0.00 42.77 4.11
2232 2337 5.534278 GGCGTTCTACTAGTATAGAGGGTTT 59.466 44.000 2.33 0.00 42.77 3.27
2233 2338 6.712547 GGCGTTCTACTAGTATAGAGGGTTTA 59.287 42.308 2.33 0.00 42.77 2.01
2234 2339 7.308288 GGCGTTCTACTAGTATAGAGGGTTTAC 60.308 44.444 2.33 0.00 42.77 2.01
2235 2340 7.227512 GCGTTCTACTAGTATAGAGGGTTTACA 59.772 40.741 2.33 0.00 42.77 2.41
2236 2341 9.282569 CGTTCTACTAGTATAGAGGGTTTACAT 57.717 37.037 2.33 0.00 42.77 2.29
2248 2353 7.839680 AGAGGGTTTACATGATTTTTCACTT 57.160 32.000 0.00 0.00 0.00 3.16
2249 2354 8.250143 AGAGGGTTTACATGATTTTTCACTTT 57.750 30.769 0.00 0.00 0.00 2.66
2250 2355 8.360390 AGAGGGTTTACATGATTTTTCACTTTC 58.640 33.333 0.00 0.00 0.00 2.62
2251 2356 8.017418 AGGGTTTACATGATTTTTCACTTTCA 57.983 30.769 0.00 0.00 0.00 2.69
2252 2357 8.482128 AGGGTTTACATGATTTTTCACTTTCAA 58.518 29.630 0.00 0.00 0.00 2.69
2253 2358 9.103861 GGGTTTACATGATTTTTCACTTTCAAA 57.896 29.630 0.00 0.00 0.00 2.69
2298 2403 8.827177 TTATAGAACTTGGCTTGTATATTCCG 57.173 34.615 0.00 0.00 0.00 4.30
2299 2404 5.353394 AGAACTTGGCTTGTATATTCCGA 57.647 39.130 0.00 0.00 0.00 4.55
2300 2405 5.930135 AGAACTTGGCTTGTATATTCCGAT 58.070 37.500 0.00 0.00 0.00 4.18
2301 2406 5.760253 AGAACTTGGCTTGTATATTCCGATG 59.240 40.000 0.00 0.00 0.00 3.84
2302 2407 5.290493 ACTTGGCTTGTATATTCCGATGA 57.710 39.130 0.00 0.00 0.00 2.92
2303 2408 5.057149 ACTTGGCTTGTATATTCCGATGAC 58.943 41.667 0.00 0.00 0.00 3.06
2304 2409 3.649073 TGGCTTGTATATTCCGATGACG 58.351 45.455 0.00 0.00 39.43 4.35
2305 2410 3.319689 TGGCTTGTATATTCCGATGACGA 59.680 43.478 0.00 0.00 42.66 4.20
2306 2411 3.921021 GGCTTGTATATTCCGATGACGAG 59.079 47.826 0.00 0.00 42.66 4.18
2307 2412 3.365220 GCTTGTATATTCCGATGACGAGC 59.635 47.826 0.00 0.00 42.66 5.03
2308 2413 4.799678 CTTGTATATTCCGATGACGAGCT 58.200 43.478 0.00 0.00 42.66 4.09
2309 2414 4.848562 TGTATATTCCGATGACGAGCTT 57.151 40.909 0.00 0.00 42.66 3.74
2310 2415 4.795268 TGTATATTCCGATGACGAGCTTC 58.205 43.478 0.00 0.00 42.66 3.86
2311 2416 2.795175 TATTCCGATGACGAGCTTCC 57.205 50.000 0.00 0.00 42.66 3.46
2312 2417 1.115467 ATTCCGATGACGAGCTTCCT 58.885 50.000 0.00 0.00 42.66 3.36
2313 2418 0.895530 TTCCGATGACGAGCTTCCTT 59.104 50.000 0.00 0.00 42.66 3.36
2314 2419 1.758936 TCCGATGACGAGCTTCCTTA 58.241 50.000 0.00 0.00 42.66 2.69
2315 2420 2.097036 TCCGATGACGAGCTTCCTTAA 58.903 47.619 0.00 0.00 42.66 1.85
2316 2421 2.494471 TCCGATGACGAGCTTCCTTAAA 59.506 45.455 0.00 0.00 42.66 1.52
2317 2422 3.132289 TCCGATGACGAGCTTCCTTAAAT 59.868 43.478 0.00 0.00 42.66 1.40
2318 2423 3.246226 CCGATGACGAGCTTCCTTAAATG 59.754 47.826 0.00 0.00 42.66 2.32
2319 2424 3.302740 CGATGACGAGCTTCCTTAAATGC 60.303 47.826 0.00 0.00 42.66 3.56
2320 2425 3.334583 TGACGAGCTTCCTTAAATGCT 57.665 42.857 0.00 0.00 38.59 3.79
2321 2426 3.262420 TGACGAGCTTCCTTAAATGCTC 58.738 45.455 0.00 0.00 45.79 4.26
2324 2429 3.935027 GAGCTTCCTTAAATGCTCGAC 57.065 47.619 0.00 0.00 41.67 4.20
2325 2430 2.271800 AGCTTCCTTAAATGCTCGACG 58.728 47.619 0.00 0.00 0.00 5.12
2326 2431 2.000447 GCTTCCTTAAATGCTCGACGT 59.000 47.619 0.00 0.00 0.00 4.34
2327 2432 2.029365 GCTTCCTTAAATGCTCGACGTC 59.971 50.000 5.18 5.18 0.00 4.34
2328 2433 3.512680 CTTCCTTAAATGCTCGACGTCT 58.487 45.455 14.70 0.00 0.00 4.18
2329 2434 3.587797 TCCTTAAATGCTCGACGTCTT 57.412 42.857 14.70 2.23 0.00 3.01
2330 2435 3.508762 TCCTTAAATGCTCGACGTCTTC 58.491 45.455 14.70 2.88 0.00 2.87
2331 2436 3.057104 TCCTTAAATGCTCGACGTCTTCA 60.057 43.478 14.70 8.72 0.00 3.02
2332 2437 3.865745 CCTTAAATGCTCGACGTCTTCAT 59.134 43.478 14.70 10.63 0.00 2.57
2333 2438 4.259970 CCTTAAATGCTCGACGTCTTCATG 60.260 45.833 14.70 0.00 0.00 3.07
2334 2439 2.654749 AATGCTCGACGTCTTCATGA 57.345 45.000 14.70 1.81 0.00 3.07
2335 2440 2.200792 ATGCTCGACGTCTTCATGAG 57.799 50.000 14.70 12.92 0.00 2.90
2336 2441 2.283254 GCTCGACGTCTTCATGAGC 58.717 57.895 21.23 21.23 44.37 4.26
2337 2442 3.702478 CTCGACGTCTTCATGAGCA 57.298 52.632 14.70 0.00 0.00 4.26
2338 2443 1.982612 CTCGACGTCTTCATGAGCAA 58.017 50.000 14.70 0.00 0.00 3.91
2339 2444 1.916651 CTCGACGTCTTCATGAGCAAG 59.083 52.381 14.70 0.00 0.00 4.01
2340 2445 0.368227 CGACGTCTTCATGAGCAAGC 59.632 55.000 14.70 0.00 0.00 4.01
2341 2446 1.432514 GACGTCTTCATGAGCAAGCA 58.567 50.000 8.70 0.00 0.00 3.91
2342 2447 1.800586 GACGTCTTCATGAGCAAGCAA 59.199 47.619 8.70 0.00 0.00 3.91
2343 2448 1.802960 ACGTCTTCATGAGCAAGCAAG 59.197 47.619 0.00 0.00 0.00 4.01
2344 2449 1.802960 CGTCTTCATGAGCAAGCAAGT 59.197 47.619 0.00 0.00 0.00 3.16
2345 2450 2.225019 CGTCTTCATGAGCAAGCAAGTT 59.775 45.455 0.00 0.00 0.00 2.66
2346 2451 3.562505 GTCTTCATGAGCAAGCAAGTTG 58.437 45.455 0.00 0.00 39.41 3.16
2347 2452 3.251729 GTCTTCATGAGCAAGCAAGTTGA 59.748 43.478 7.16 0.00 38.60 3.18
2348 2453 3.884693 TCTTCATGAGCAAGCAAGTTGAA 59.115 39.130 7.16 0.00 38.60 2.69
2349 2454 4.521639 TCTTCATGAGCAAGCAAGTTGAAT 59.478 37.500 7.16 0.00 38.60 2.57
2350 2455 5.706833 TCTTCATGAGCAAGCAAGTTGAATA 59.293 36.000 7.16 0.00 38.60 1.75
2351 2456 5.300969 TCATGAGCAAGCAAGTTGAATAC 57.699 39.130 7.16 0.00 38.60 1.89
2352 2457 4.761227 TCATGAGCAAGCAAGTTGAATACA 59.239 37.500 7.16 0.00 38.60 2.29
2353 2458 4.488126 TGAGCAAGCAAGTTGAATACAC 57.512 40.909 7.16 0.00 38.60 2.90
2354 2459 3.882288 TGAGCAAGCAAGTTGAATACACA 59.118 39.130 7.16 0.00 38.60 3.72
2355 2460 4.222114 GAGCAAGCAAGTTGAATACACAC 58.778 43.478 7.16 0.00 38.60 3.82
2356 2461 3.885297 AGCAAGCAAGTTGAATACACACT 59.115 39.130 7.16 0.00 38.60 3.55
2357 2462 4.023707 AGCAAGCAAGTTGAATACACACTC 60.024 41.667 7.16 0.00 38.60 3.51
2358 2463 4.261155 GCAAGCAAGTTGAATACACACTCA 60.261 41.667 7.16 0.00 38.60 3.41
2359 2464 5.563475 GCAAGCAAGTTGAATACACACTCAT 60.563 40.000 7.16 0.00 38.60 2.90
2360 2465 6.441274 CAAGCAAGTTGAATACACACTCATT 58.559 36.000 7.16 0.00 38.60 2.57
2361 2466 6.639632 AGCAAGTTGAATACACACTCATTT 57.360 33.333 7.16 0.00 0.00 2.32
2362 2467 7.744087 AGCAAGTTGAATACACACTCATTTA 57.256 32.000 7.16 0.00 0.00 1.40
2363 2468 8.165239 AGCAAGTTGAATACACACTCATTTAA 57.835 30.769 7.16 0.00 0.00 1.52
2364 2469 8.796475 AGCAAGTTGAATACACACTCATTTAAT 58.204 29.630 7.16 0.00 0.00 1.40
2365 2470 9.410556 GCAAGTTGAATACACACTCATTTAATT 57.589 29.630 7.16 0.00 0.00 1.40
2377 2482 9.803130 CACACTCATTTAATTTCATATAGAGCG 57.197 33.333 0.00 0.00 0.00 5.03
2378 2483 8.499162 ACACTCATTTAATTTCATATAGAGCGC 58.501 33.333 0.00 0.00 0.00 5.92
2379 2484 8.715998 CACTCATTTAATTTCATATAGAGCGCT 58.284 33.333 11.27 11.27 0.00 5.92
2380 2485 9.277783 ACTCATTTAATTTCATATAGAGCGCTT 57.722 29.630 13.26 4.13 0.00 4.68
2383 2488 9.882996 CATTTAATTTCATATAGAGCGCTTTCA 57.117 29.630 13.26 0.00 0.00 2.69
2387 2492 8.607441 AATTTCATATAGAGCGCTTTCATACA 57.393 30.769 13.26 0.00 0.00 2.29
2388 2493 8.783833 ATTTCATATAGAGCGCTTTCATACAT 57.216 30.769 13.26 0.00 0.00 2.29
2389 2494 8.607441 TTTCATATAGAGCGCTTTCATACATT 57.393 30.769 13.26 0.00 0.00 2.71
2390 2495 8.607441 TTCATATAGAGCGCTTTCATACATTT 57.393 30.769 13.26 0.00 0.00 2.32
2391 2496 9.705290 TTCATATAGAGCGCTTTCATACATTTA 57.295 29.630 13.26 0.00 0.00 1.40
2392 2497 9.875691 TCATATAGAGCGCTTTCATACATTTAT 57.124 29.630 13.26 0.00 0.00 1.40
2395 2500 6.473397 AGAGCGCTTTCATACATTTATAGC 57.527 37.500 13.26 0.00 0.00 2.97
2396 2501 6.226787 AGAGCGCTTTCATACATTTATAGCT 58.773 36.000 13.26 0.00 0.00 3.32
2397 2502 6.367422 AGAGCGCTTTCATACATTTATAGCTC 59.633 38.462 13.26 0.00 44.35 4.09
2398 2503 6.226787 AGCGCTTTCATACATTTATAGCTCT 58.773 36.000 2.64 0.00 0.00 4.09
2399 2504 7.378966 AGCGCTTTCATACATTTATAGCTCTA 58.621 34.615 2.64 0.00 0.00 2.43
2400 2505 7.543868 AGCGCTTTCATACATTTATAGCTCTAG 59.456 37.037 2.64 0.00 0.00 2.43
2401 2506 7.329717 GCGCTTTCATACATTTATAGCTCTAGT 59.670 37.037 0.00 0.00 0.00 2.57
2402 2507 8.642885 CGCTTTCATACATTTATAGCTCTAGTG 58.357 37.037 0.00 0.00 0.00 2.74
2403 2508 9.482627 GCTTTCATACATTTATAGCTCTAGTGT 57.517 33.333 0.00 0.00 0.00 3.55
2411 2516 9.026121 ACATTTATAGCTCTAGTGTATACCTGG 57.974 37.037 0.00 0.00 0.00 4.45
2412 2517 7.463961 TTTATAGCTCTAGTGTATACCTGGC 57.536 40.000 0.00 4.65 0.00 4.85
2413 2518 2.599677 AGCTCTAGTGTATACCTGGCC 58.400 52.381 0.00 0.00 0.00 5.36
2414 2519 2.091278 AGCTCTAGTGTATACCTGGCCA 60.091 50.000 4.71 4.71 0.00 5.36
2415 2520 2.698797 GCTCTAGTGTATACCTGGCCAA 59.301 50.000 7.01 0.00 0.00 4.52
2416 2521 3.134081 GCTCTAGTGTATACCTGGCCAAA 59.866 47.826 7.01 0.00 0.00 3.28
2417 2522 4.694339 CTCTAGTGTATACCTGGCCAAAC 58.306 47.826 7.01 0.69 0.00 2.93
2418 2523 2.396590 AGTGTATACCTGGCCAAACG 57.603 50.000 7.01 0.00 0.00 3.60
2419 2524 1.065709 AGTGTATACCTGGCCAAACGG 60.066 52.381 7.01 7.56 0.00 4.44
2420 2525 0.253610 TGTATACCTGGCCAAACGGG 59.746 55.000 7.01 7.12 42.81 5.28
2429 2534 3.361977 CCAAACGGGCCGGTTCTG 61.362 66.667 29.21 18.26 33.19 3.02
2430 2535 3.361977 CAAACGGGCCGGTTCTGG 61.362 66.667 29.21 12.75 33.19 3.86
2431 2536 3.881104 AAACGGGCCGGTTCTGGT 61.881 61.111 31.78 10.44 27.02 4.00
2432 2537 4.636435 AACGGGCCGGTTCTGGTG 62.636 66.667 31.78 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
573 574 4.217118 CAGTTCAATTGAGGCTTAGTGCTT 59.783 41.667 8.41 0.00 42.39 3.91
574 575 3.755378 CAGTTCAATTGAGGCTTAGTGCT 59.245 43.478 8.41 0.00 42.39 4.40
1495 1591 2.616458 GGGGAAGGGTCACATGCCT 61.616 63.158 0.00 0.00 0.00 4.75
1496 1592 2.043953 GGGGAAGGGTCACATGCC 60.044 66.667 0.00 0.00 0.00 4.40
1497 1593 1.379044 CTGGGGAAGGGTCACATGC 60.379 63.158 0.00 0.00 0.00 4.06
1498 1594 0.035056 GTCTGGGGAAGGGTCACATG 60.035 60.000 0.00 0.00 0.00 3.21
1499 1595 1.208165 GGTCTGGGGAAGGGTCACAT 61.208 60.000 0.00 0.00 0.00 3.21
1500 1596 1.846124 GGTCTGGGGAAGGGTCACA 60.846 63.158 0.00 0.00 0.00 3.58
1501 1597 2.603652 GGGTCTGGGGAAGGGTCAC 61.604 68.421 0.00 0.00 0.00 3.67
1502 1598 2.204090 GGGTCTGGGGAAGGGTCA 60.204 66.667 0.00 0.00 0.00 4.02
1503 1599 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1504 1600 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1505 1601 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
1506 1602 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
1507 1603 1.550130 TTACGCAGGGTCTGGGGAAG 61.550 60.000 14.76 0.00 46.52 3.46
1508 1604 1.536907 TTACGCAGGGTCTGGGGAA 60.537 57.895 14.76 10.46 46.52 3.97
1509 1605 1.987855 CTTACGCAGGGTCTGGGGA 60.988 63.158 14.76 5.03 46.52 4.81
1510 1606 2.584608 CTTACGCAGGGTCTGGGG 59.415 66.667 14.76 0.00 46.52 4.96
1512 1608 2.509336 CGCTTACGCAGGGTCTGG 60.509 66.667 0.00 0.00 35.30 3.86
1513 1609 2.509336 CCGCTTACGCAGGGTCTG 60.509 66.667 0.00 0.00 38.22 3.51
1514 1610 3.771160 CCCGCTTACGCAGGGTCT 61.771 66.667 11.33 0.00 41.79 3.85
1515 1611 3.718210 CTCCCGCTTACGCAGGGTC 62.718 68.421 16.64 0.00 44.78 4.46
1516 1612 3.771160 CTCCCGCTTACGCAGGGT 61.771 66.667 16.64 0.00 44.78 4.34
1518 1614 2.782222 TAGCTCCCGCTTACGCAGG 61.782 63.158 0.00 0.00 46.47 4.85
1519 1615 1.589196 GTAGCTCCCGCTTACGCAG 60.589 63.158 0.00 0.00 46.47 5.18
1520 1616 1.672854 ATGTAGCTCCCGCTTACGCA 61.673 55.000 0.00 0.00 46.47 5.24
1521 1617 1.067582 ATGTAGCTCCCGCTTACGC 59.932 57.895 0.00 0.00 46.47 4.42
1522 1618 1.215655 GCATGTAGCTCCCGCTTACG 61.216 60.000 0.00 0.00 46.47 3.18
1523 1619 0.179084 TGCATGTAGCTCCCGCTTAC 60.179 55.000 0.00 0.00 46.47 2.34
1524 1620 0.179084 GTGCATGTAGCTCCCGCTTA 60.179 55.000 0.00 0.00 46.47 3.09
1525 1621 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1527 1623 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
1528 1624 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
1529 1625 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
1530 1626 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
1531 1627 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
1532 1628 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
1533 1629 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
1534 1630 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
1535 1631 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
1553 1649 6.762661 CACATGAATATTGCTTTAAAAGGGGG 59.237 38.462 0.00 0.00 0.00 5.40
1554 1650 7.555087 TCACATGAATATTGCTTTAAAAGGGG 58.445 34.615 0.00 0.00 0.00 4.79
1555 1651 7.707893 CCTCACATGAATATTGCTTTAAAAGGG 59.292 37.037 0.00 0.00 0.00 3.95
1556 1652 7.223387 GCCTCACATGAATATTGCTTTAAAAGG 59.777 37.037 0.00 0.00 0.00 3.11
1557 1653 7.223387 GGCCTCACATGAATATTGCTTTAAAAG 59.777 37.037 0.00 0.00 0.00 2.27
1558 1654 7.041107 GGCCTCACATGAATATTGCTTTAAAA 58.959 34.615 0.00 0.00 0.00 1.52
1559 1655 6.380846 AGGCCTCACATGAATATTGCTTTAAA 59.619 34.615 0.00 0.00 0.00 1.52
1560 1656 5.893255 AGGCCTCACATGAATATTGCTTTAA 59.107 36.000 0.00 0.00 0.00 1.52
1561 1657 5.448654 AGGCCTCACATGAATATTGCTTTA 58.551 37.500 0.00 0.00 0.00 1.85
1562 1658 4.284178 AGGCCTCACATGAATATTGCTTT 58.716 39.130 0.00 0.00 0.00 3.51
1563 1659 3.887716 GAGGCCTCACATGAATATTGCTT 59.112 43.478 28.43 0.00 0.00 3.91
1564 1660 3.117776 TGAGGCCTCACATGAATATTGCT 60.118 43.478 32.00 0.00 34.14 3.91
1565 1661 3.216800 TGAGGCCTCACATGAATATTGC 58.783 45.455 32.00 0.80 34.14 3.56
1577 1673 6.614694 TTAGTTTACATTAGTGAGGCCTCA 57.385 37.500 32.00 32.00 37.24 3.86
1578 1674 7.328737 TCTTTAGTTTACATTAGTGAGGCCTC 58.671 38.462 26.78 26.78 0.00 4.70
1659 1755 9.378551 GTATGGTCAGACATAAACTAAACATCA 57.621 33.333 2.17 0.00 35.29 3.07
2225 2330 8.141268 TGAAAGTGAAAAATCATGTAAACCCTC 58.859 33.333 0.00 0.00 0.00 4.30
2226 2331 8.017418 TGAAAGTGAAAAATCATGTAAACCCT 57.983 30.769 0.00 0.00 0.00 4.34
2227 2332 8.655651 TTGAAAGTGAAAAATCATGTAAACCC 57.344 30.769 0.00 0.00 0.00 4.11
2272 2377 9.436957 CGGAATATACAAGCCAAGTTCTATAAT 57.563 33.333 0.00 0.00 0.00 1.28
2273 2378 8.644216 TCGGAATATACAAGCCAAGTTCTATAA 58.356 33.333 0.00 0.00 0.00 0.98
2274 2379 8.185506 TCGGAATATACAAGCCAAGTTCTATA 57.814 34.615 0.00 0.00 0.00 1.31
2275 2380 7.062749 TCGGAATATACAAGCCAAGTTCTAT 57.937 36.000 0.00 0.00 0.00 1.98
2276 2381 6.474140 TCGGAATATACAAGCCAAGTTCTA 57.526 37.500 0.00 0.00 0.00 2.10
2277 2382 5.353394 TCGGAATATACAAGCCAAGTTCT 57.647 39.130 0.00 0.00 0.00 3.01
2278 2383 5.758296 TCATCGGAATATACAAGCCAAGTTC 59.242 40.000 0.00 0.00 0.00 3.01
2279 2384 5.527582 GTCATCGGAATATACAAGCCAAGTT 59.472 40.000 0.00 0.00 0.00 2.66
2280 2385 5.057149 GTCATCGGAATATACAAGCCAAGT 58.943 41.667 0.00 0.00 0.00 3.16
2281 2386 4.150627 CGTCATCGGAATATACAAGCCAAG 59.849 45.833 0.00 0.00 0.00 3.61
2282 2387 4.055360 CGTCATCGGAATATACAAGCCAA 58.945 43.478 0.00 0.00 0.00 4.52
2283 2388 3.319689 TCGTCATCGGAATATACAAGCCA 59.680 43.478 0.00 0.00 37.69 4.75
2284 2389 3.909430 TCGTCATCGGAATATACAAGCC 58.091 45.455 0.00 0.00 37.69 4.35
2285 2390 3.365220 GCTCGTCATCGGAATATACAAGC 59.635 47.826 0.00 0.00 37.69 4.01
2286 2391 4.799678 AGCTCGTCATCGGAATATACAAG 58.200 43.478 0.00 0.00 37.69 3.16
2287 2392 4.848562 AGCTCGTCATCGGAATATACAA 57.151 40.909 0.00 0.00 37.69 2.41
2288 2393 4.321008 GGAAGCTCGTCATCGGAATATACA 60.321 45.833 0.00 0.00 37.69 2.29
2289 2394 4.082679 AGGAAGCTCGTCATCGGAATATAC 60.083 45.833 0.00 0.00 37.69 1.47
2290 2395 4.079970 AGGAAGCTCGTCATCGGAATATA 58.920 43.478 0.00 0.00 37.69 0.86
2291 2396 2.894126 AGGAAGCTCGTCATCGGAATAT 59.106 45.455 0.00 0.00 37.69 1.28
2292 2397 2.307768 AGGAAGCTCGTCATCGGAATA 58.692 47.619 0.00 0.00 37.69 1.75
2293 2398 1.115467 AGGAAGCTCGTCATCGGAAT 58.885 50.000 0.00 0.00 37.69 3.01
2294 2399 0.895530 AAGGAAGCTCGTCATCGGAA 59.104 50.000 0.00 0.00 37.69 4.30
2295 2400 1.758936 TAAGGAAGCTCGTCATCGGA 58.241 50.000 0.00 0.00 37.69 4.55
2296 2401 2.579207 TTAAGGAAGCTCGTCATCGG 57.421 50.000 0.00 0.00 37.69 4.18
2297 2402 3.302740 GCATTTAAGGAAGCTCGTCATCG 60.303 47.826 0.00 0.00 38.55 3.84
2298 2403 3.873952 AGCATTTAAGGAAGCTCGTCATC 59.126 43.478 0.00 0.00 30.05 2.92
2299 2404 3.873952 GAGCATTTAAGGAAGCTCGTCAT 59.126 43.478 0.00 0.00 43.27 3.06
2300 2405 3.262420 GAGCATTTAAGGAAGCTCGTCA 58.738 45.455 0.00 0.00 43.27 4.35
2301 2406 3.935027 GAGCATTTAAGGAAGCTCGTC 57.065 47.619 0.00 0.00 43.27 4.20
2305 2410 2.271800 CGTCGAGCATTTAAGGAAGCT 58.728 47.619 0.00 0.00 40.60 3.74
2306 2411 2.000447 ACGTCGAGCATTTAAGGAAGC 59.000 47.619 0.00 0.00 0.00 3.86
2307 2412 3.512680 AGACGTCGAGCATTTAAGGAAG 58.487 45.455 10.46 0.00 0.00 3.46
2308 2413 3.587797 AGACGTCGAGCATTTAAGGAA 57.412 42.857 10.46 0.00 0.00 3.36
2309 2414 3.057104 TGAAGACGTCGAGCATTTAAGGA 60.057 43.478 10.46 0.00 0.00 3.36
2310 2415 3.250744 TGAAGACGTCGAGCATTTAAGG 58.749 45.455 10.46 0.00 0.00 2.69
2311 2416 4.562789 TCATGAAGACGTCGAGCATTTAAG 59.437 41.667 10.46 4.00 0.00 1.85
2312 2417 4.490743 TCATGAAGACGTCGAGCATTTAA 58.509 39.130 10.46 0.00 0.00 1.52
2313 2418 4.104696 TCATGAAGACGTCGAGCATTTA 57.895 40.909 10.46 3.55 0.00 1.40
2314 2419 2.926200 CTCATGAAGACGTCGAGCATTT 59.074 45.455 10.46 0.00 0.00 2.32
2315 2420 2.534298 CTCATGAAGACGTCGAGCATT 58.466 47.619 10.46 0.00 0.00 3.56
2316 2421 1.800655 GCTCATGAAGACGTCGAGCAT 60.801 52.381 27.08 20.35 46.55 3.79
2317 2422 0.456824 GCTCATGAAGACGTCGAGCA 60.457 55.000 27.08 19.28 46.55 4.26
2318 2423 2.283254 GCTCATGAAGACGTCGAGC 58.717 57.895 21.23 21.23 41.98 5.03
2319 2424 1.916651 CTTGCTCATGAAGACGTCGAG 59.083 52.381 10.46 11.17 0.00 4.04
2320 2425 1.982612 CTTGCTCATGAAGACGTCGA 58.017 50.000 10.46 0.00 0.00 4.20
2321 2426 0.368227 GCTTGCTCATGAAGACGTCG 59.632 55.000 10.46 0.00 0.00 5.12
2322 2427 1.432514 TGCTTGCTCATGAAGACGTC 58.567 50.000 7.70 7.70 0.00 4.34
2323 2428 1.802960 CTTGCTTGCTCATGAAGACGT 59.197 47.619 0.00 0.00 0.00 4.34
2324 2429 1.802960 ACTTGCTTGCTCATGAAGACG 59.197 47.619 0.00 0.00 0.00 4.18
2325 2430 3.251729 TCAACTTGCTTGCTCATGAAGAC 59.748 43.478 0.00 0.00 0.00 3.01
2326 2431 3.479489 TCAACTTGCTTGCTCATGAAGA 58.521 40.909 0.00 0.00 0.00 2.87
2327 2432 3.909776 TCAACTTGCTTGCTCATGAAG 57.090 42.857 0.00 0.00 0.00 3.02
2328 2433 4.859304 ATTCAACTTGCTTGCTCATGAA 57.141 36.364 0.00 0.00 0.00 2.57
2329 2434 4.761227 TGTATTCAACTTGCTTGCTCATGA 59.239 37.500 0.00 0.00 0.00 3.07
2330 2435 4.855388 GTGTATTCAACTTGCTTGCTCATG 59.145 41.667 0.00 0.00 0.00 3.07
2331 2436 4.520111 TGTGTATTCAACTTGCTTGCTCAT 59.480 37.500 0.00 0.00 0.00 2.90
2332 2437 3.882288 TGTGTATTCAACTTGCTTGCTCA 59.118 39.130 0.00 0.00 0.00 4.26
2333 2438 4.023707 AGTGTGTATTCAACTTGCTTGCTC 60.024 41.667 0.00 0.00 0.00 4.26
2334 2439 3.885297 AGTGTGTATTCAACTTGCTTGCT 59.115 39.130 0.00 0.00 0.00 3.91
2335 2440 4.222114 GAGTGTGTATTCAACTTGCTTGC 58.778 43.478 0.00 0.00 0.00 4.01
2336 2441 5.422666 TGAGTGTGTATTCAACTTGCTTG 57.577 39.130 0.00 0.00 0.00 4.01
2337 2442 6.639632 AATGAGTGTGTATTCAACTTGCTT 57.360 33.333 0.00 0.00 0.00 3.91
2338 2443 6.639632 AAATGAGTGTGTATTCAACTTGCT 57.360 33.333 0.00 0.00 0.00 3.91
2339 2444 8.970691 ATTAAATGAGTGTGTATTCAACTTGC 57.029 30.769 0.00 0.00 0.00 4.01
2351 2456 9.803130 CGCTCTATATGAAATTAAATGAGTGTG 57.197 33.333 0.00 0.00 0.00 3.82
2352 2457 8.499162 GCGCTCTATATGAAATTAAATGAGTGT 58.501 33.333 0.00 0.00 33.66 3.55
2353 2458 8.715998 AGCGCTCTATATGAAATTAAATGAGTG 58.284 33.333 2.64 0.00 34.08 3.51
2354 2459 8.839310 AGCGCTCTATATGAAATTAAATGAGT 57.161 30.769 2.64 0.00 0.00 3.41
2357 2462 9.882996 TGAAAGCGCTCTATATGAAATTAAATG 57.117 29.630 12.06 0.00 0.00 2.32
2361 2466 9.705290 TGTATGAAAGCGCTCTATATGAAATTA 57.295 29.630 12.06 0.00 0.00 1.40
2362 2467 8.607441 TGTATGAAAGCGCTCTATATGAAATT 57.393 30.769 12.06 0.00 0.00 1.82
2363 2468 8.783833 ATGTATGAAAGCGCTCTATATGAAAT 57.216 30.769 12.06 0.00 0.00 2.17
2364 2469 8.607441 AATGTATGAAAGCGCTCTATATGAAA 57.393 30.769 12.06 0.00 0.00 2.69
2365 2470 8.607441 AAATGTATGAAAGCGCTCTATATGAA 57.393 30.769 12.06 1.39 0.00 2.57
2366 2471 9.875691 ATAAATGTATGAAAGCGCTCTATATGA 57.124 29.630 12.06 2.04 0.00 2.15
2369 2474 9.302345 GCTATAAATGTATGAAAGCGCTCTATA 57.698 33.333 12.06 7.26 0.00 1.31
2370 2475 8.037758 AGCTATAAATGTATGAAAGCGCTCTAT 58.962 33.333 12.06 8.36 33.80 1.98
2371 2476 7.378966 AGCTATAAATGTATGAAAGCGCTCTA 58.621 34.615 12.06 0.00 33.80 2.43
2372 2477 6.226787 AGCTATAAATGTATGAAAGCGCTCT 58.773 36.000 12.06 0.00 33.80 4.09
2373 2478 6.367422 AGAGCTATAAATGTATGAAAGCGCTC 59.633 38.462 12.06 0.00 34.22 5.03
2374 2479 6.226787 AGAGCTATAAATGTATGAAAGCGCT 58.773 36.000 2.64 2.64 34.47 5.92
2375 2480 6.473397 AGAGCTATAAATGTATGAAAGCGC 57.527 37.500 0.00 0.00 33.80 5.92
2376 2481 8.642885 CACTAGAGCTATAAATGTATGAAAGCG 58.357 37.037 0.00 0.00 33.80 4.68
2377 2482 9.482627 ACACTAGAGCTATAAATGTATGAAAGC 57.517 33.333 0.00 0.00 0.00 3.51
2385 2490 9.026121 CCAGGTATACACTAGAGCTATAAATGT 57.974 37.037 5.01 9.26 0.00 2.71
2386 2491 7.976734 GCCAGGTATACACTAGAGCTATAAATG 59.023 40.741 5.01 0.00 0.00 2.32
2387 2492 7.124448 GGCCAGGTATACACTAGAGCTATAAAT 59.876 40.741 5.01 0.00 0.00 1.40
2388 2493 6.436532 GGCCAGGTATACACTAGAGCTATAAA 59.563 42.308 5.01 0.00 0.00 1.40
2389 2494 5.950549 GGCCAGGTATACACTAGAGCTATAA 59.049 44.000 5.01 0.00 0.00 0.98
2390 2495 5.014860 TGGCCAGGTATACACTAGAGCTATA 59.985 44.000 0.00 0.00 0.00 1.31
2391 2496 4.202684 TGGCCAGGTATACACTAGAGCTAT 60.203 45.833 0.00 0.00 0.00 2.97
2392 2497 3.139584 TGGCCAGGTATACACTAGAGCTA 59.860 47.826 0.00 0.16 0.00 3.32
2393 2498 2.091278 TGGCCAGGTATACACTAGAGCT 60.091 50.000 0.00 0.00 0.00 4.09
2394 2499 2.317040 TGGCCAGGTATACACTAGAGC 58.683 52.381 0.00 4.09 0.00 4.09
2395 2500 4.694339 GTTTGGCCAGGTATACACTAGAG 58.306 47.826 5.11 0.00 0.00 2.43
2396 2501 3.131577 CGTTTGGCCAGGTATACACTAGA 59.868 47.826 5.11 0.00 0.00 2.43
2397 2502 3.454375 CGTTTGGCCAGGTATACACTAG 58.546 50.000 5.11 0.00 0.00 2.57
2398 2503 2.168936 CCGTTTGGCCAGGTATACACTA 59.831 50.000 5.11 0.00 0.00 2.74
2399 2504 1.065709 CCGTTTGGCCAGGTATACACT 60.066 52.381 5.11 0.00 0.00 3.55
2400 2505 1.375551 CCGTTTGGCCAGGTATACAC 58.624 55.000 5.11 0.00 0.00 2.90
2401 2506 0.253610 CCCGTTTGGCCAGGTATACA 59.746 55.000 5.11 0.00 0.00 2.29
2402 2507 3.089788 CCCGTTTGGCCAGGTATAC 57.910 57.895 5.11 0.00 0.00 1.47
2412 2517 3.361977 CAGAACCGGCCCGTTTGG 61.362 66.667 10.93 1.15 37.09 3.28
2413 2518 3.361977 CCAGAACCGGCCCGTTTG 61.362 66.667 10.93 10.43 0.00 2.93
2414 2519 3.881104 ACCAGAACCGGCCCGTTT 61.881 61.111 10.93 0.00 0.00 3.60
2415 2520 4.636435 CACCAGAACCGGCCCGTT 62.636 66.667 9.37 9.37 0.00 4.44
2429 2534 4.910585 CTATCGTGCCGGCCCACC 62.911 72.222 26.77 8.28 32.10 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.