Multiple sequence alignment - TraesCS3A01G181100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G181100 chr3A 100.000 5353 0 0 1 5353 208805818 208800466 0.000000e+00 9886.0
1 TraesCS3A01G181100 chr3D 93.270 4829 240 42 30 4806 171336095 171331300 0.000000e+00 7038.0
2 TraesCS3A01G181100 chr3D 79.017 753 131 18 2135 2869 340701233 340700490 1.730000e-134 490.0
3 TraesCS3A01G181100 chr3D 87.423 326 32 9 4857 5177 171331151 171330830 3.050000e-97 366.0
4 TraesCS3A01G181100 chr3D 96.970 33 1 0 1 33 171336155 171336123 7.490000e-04 56.5
5 TraesCS3A01G181100 chr3B 93.129 2838 150 28 30 2841 250279411 250276593 0.000000e+00 4119.0
6 TraesCS3A01G181100 chr3B 95.294 1870 64 12 2836 4691 250275904 250274045 0.000000e+00 2944.0
7 TraesCS3A01G181100 chr4D 87.615 654 77 3 1986 2638 369260421 369261071 0.000000e+00 756.0
8 TraesCS3A01G181100 chr4A 85.023 661 92 5 1986 2645 95186234 95185580 0.000000e+00 665.0
9 TraesCS3A01G181100 chr4A 85.938 192 17 4 2678 2868 95185357 95185175 4.230000e-46 196.0
10 TraesCS3A01G181100 chr4B 85.474 654 76 4 1986 2638 454697979 454698614 0.000000e+00 664.0
11 TraesCS3A01G181100 chr4B 88.318 214 15 4 2656 2868 454698726 454698930 1.150000e-61 248.0
12 TraesCS3A01G181100 chr7A 78.452 840 146 24 1992 2807 252713297 252712469 2.860000e-142 516.0
13 TraesCS3A01G181100 chr7D 79.073 712 116 24 2115 2806 237408291 237407593 4.890000e-125 459.0
14 TraesCS3A01G181100 chr7D 80.299 335 53 7 1991 2323 602909707 602910030 1.930000e-59 241.0
15 TraesCS3A01G181100 chr2B 79.912 453 72 11 2307 2745 3411315 3410868 1.120000e-81 315.0
16 TraesCS3A01G181100 chr2B 85.333 75 9 2 2796 2869 410162555 410162482 5.750000e-10 76.8
17 TraesCS3A01G181100 chr2A 87.356 174 18 3 2640 2812 182913028 182913198 4.230000e-46 196.0
18 TraesCS3A01G181100 chr2D 82.432 74 13 0 2796 2869 344948933 344948860 1.240000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G181100 chr3A 208800466 208805818 5352 True 9886.000000 9886 100.000000 1 5353 1 chr3A.!!$R1 5352
1 TraesCS3A01G181100 chr3D 171330830 171336155 5325 True 2486.833333 7038 92.554333 1 5177 3 chr3D.!!$R2 5176
2 TraesCS3A01G181100 chr3D 340700490 340701233 743 True 490.000000 490 79.017000 2135 2869 1 chr3D.!!$R1 734
3 TraesCS3A01G181100 chr3B 250274045 250279411 5366 True 3531.500000 4119 94.211500 30 4691 2 chr3B.!!$R1 4661
4 TraesCS3A01G181100 chr4D 369260421 369261071 650 False 756.000000 756 87.615000 1986 2638 1 chr4D.!!$F1 652
5 TraesCS3A01G181100 chr4A 95185175 95186234 1059 True 430.500000 665 85.480500 1986 2868 2 chr4A.!!$R1 882
6 TraesCS3A01G181100 chr4B 454697979 454698930 951 False 456.000000 664 86.896000 1986 2868 2 chr4B.!!$F1 882
7 TraesCS3A01G181100 chr7A 252712469 252713297 828 True 516.000000 516 78.452000 1992 2807 1 chr7A.!!$R1 815
8 TraesCS3A01G181100 chr7D 237407593 237408291 698 True 459.000000 459 79.073000 2115 2806 1 chr7D.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 610 0.539438 GGTGTTCCATCAGGCACCAA 60.539 55.000 7.59 0.0 43.63 3.67 F
1234 1280 0.698818 AGGGTTTCCTTTCGGATGCT 59.301 50.000 0.00 0.0 41.56 3.79 F
2569 2624 0.976641 AAGAAGGCACATCCGACAGA 59.023 50.000 0.00 0.0 40.77 3.41 F
3138 4083 1.412710 GGGATGCCTCTGTATGTTCGA 59.587 52.381 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2117 0.533308 ACTTTTAGCGGGCGTGTTCA 60.533 50.0 0.00 0.0 0.00 3.18 R
3116 4061 0.469917 AACATACAGAGGCATCCCCG 59.530 55.0 0.00 0.0 39.21 5.73 R
4136 5109 0.969149 AGTCGAGCTTGTCCATGTCA 59.031 50.0 0.00 0.0 0.00 3.58 R
4831 5836 0.312102 GGCTGCCGCTTCAAATATCC 59.688 55.0 1.35 0.0 36.09 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 69 3.382832 ACTACCGCTCGGCTGCTT 61.383 61.111 8.41 0.00 39.32 3.91
313 350 2.011222 TGTTGTTTTGGACGACTGGAC 58.989 47.619 0.00 0.00 42.26 4.02
369 407 4.640201 CCTGGAATTCTAGCGATTTTTCCA 59.360 41.667 13.09 11.32 0.00 3.53
568 610 0.539438 GGTGTTCCATCAGGCACCAA 60.539 55.000 7.59 0.00 43.63 3.67
625 667 2.365941 GCGCTTATAGGTTCCTCTCCTT 59.634 50.000 0.00 0.00 36.60 3.36
646 688 3.988819 TCCATTTCCTTTCGCCAAAAAG 58.011 40.909 0.00 0.00 36.26 2.27
707 749 5.196695 GGCTCATCCTGTTAATTTCCTCTT 58.803 41.667 0.00 0.00 0.00 2.85
879 924 5.440610 ACTGAGTTGTCATTCTGTTCCTTT 58.559 37.500 0.00 0.00 30.18 3.11
946 991 7.269084 CGCATTCATCCGTGTGATAATATTTTC 59.731 37.037 0.00 0.00 30.56 2.29
989 1035 1.957877 CTGATAGAGTCGTCCCCCTTC 59.042 57.143 0.00 0.00 0.00 3.46
1021 1067 7.487189 GCAAAATGTCATTTCTATGGAAGTCAG 59.513 37.037 11.19 0.00 32.61 3.51
1054 1100 1.607148 CAACGGAGAAAACCTTGACCC 59.393 52.381 0.00 0.00 0.00 4.46
1082 1128 7.819900 GGAAGAACAGCAAGAGAAAGTAAGATA 59.180 37.037 0.00 0.00 0.00 1.98
1086 1132 9.810545 GAACAGCAAGAGAAAGTAAGATACTAT 57.189 33.333 0.00 0.00 38.26 2.12
1116 1162 6.463995 ACCTTAGAGCTCTATTTGTCTCAG 57.536 41.667 23.81 14.68 0.00 3.35
1124 1170 4.329528 GCTCTATTTGTCTCAGCTGAAGTG 59.670 45.833 18.85 11.73 0.00 3.16
1204 1250 2.143925 CAACTTGAAGAACCCTCGTCC 58.856 52.381 0.00 0.00 29.75 4.79
1234 1280 0.698818 AGGGTTTCCTTTCGGATGCT 59.301 50.000 0.00 0.00 41.56 3.79
1351 1397 4.038402 CCAGAAATGATTTCCTGGGTATGC 59.962 45.833 19.72 0.00 40.54 3.14
1395 1442 8.940768 TGTTCATGTTCGATTGTAGATTCATA 57.059 30.769 0.00 0.00 0.00 2.15
1396 1443 9.546428 TGTTCATGTTCGATTGTAGATTCATAT 57.454 29.630 0.00 0.00 0.00 1.78
1429 1476 6.037062 GGCAAAACAAAAGAGCAGTGTAATTT 59.963 34.615 0.00 0.00 0.00 1.82
1431 1478 8.764287 GCAAAACAAAAGAGCAGTGTAATTTAT 58.236 29.630 0.00 0.00 0.00 1.40
1467 1514 3.451402 TGGAAGAGCAGGTAGTACTCA 57.549 47.619 0.00 0.00 32.71 3.41
1492 1540 7.979444 AAAAGCATGCAGAGTAAGTTTAGTA 57.021 32.000 21.98 0.00 0.00 1.82
1495 1543 9.667107 AAAGCATGCAGAGTAAGTTTAGTATAA 57.333 29.630 21.98 0.00 0.00 0.98
1551 1600 5.529800 CCACTGTGCTGATTGAATGATATCA 59.470 40.000 8.10 8.10 0.00 2.15
1552 1601 6.038936 CCACTGTGCTGATTGAATGATATCAA 59.961 38.462 9.99 0.00 43.03 2.57
1781 1831 1.210722 GCCAGGCTTAGAGGTTAGCTT 59.789 52.381 3.29 0.00 37.54 3.74
1793 1843 4.467795 AGAGGTTAGCTTATTCACTGCAGA 59.532 41.667 23.35 0.00 0.00 4.26
1795 1845 4.223923 AGGTTAGCTTATTCACTGCAGAGT 59.776 41.667 23.35 5.45 0.00 3.24
1948 1998 8.946085 AGTTGCTTGATCTGAATAAATCGTAAA 58.054 29.630 0.00 0.00 0.00 2.01
1973 2023 2.480419 GTGAAAGCGACATAGCAACTGT 59.520 45.455 0.00 0.00 40.15 3.55
1988 2038 4.275936 AGCAACTGTGAACCACAATTAGAC 59.724 41.667 1.29 0.00 44.08 2.59
2004 2054 6.382570 ACAATTAGACCAACTCTAGCAGATCT 59.617 38.462 0.00 0.00 32.75 2.75
2046 2096 5.124645 TGTATAATTCCGGCGGTTTTACAT 58.875 37.500 27.32 14.49 0.00 2.29
2096 2147 1.743995 CTAAAAGTCCACCGGCCCG 60.744 63.158 0.00 0.00 0.00 6.13
2100 2151 1.844544 AAAGTCCACCGGCCCGTAAT 61.845 55.000 0.00 0.00 0.00 1.89
2484 2539 1.227853 ACGAGGTGCTTTTTCCGCT 60.228 52.632 0.00 0.00 0.00 5.52
2532 2587 2.183046 GCTCCTCGCTGTGGACTC 59.817 66.667 0.00 0.00 35.14 3.36
2569 2624 0.976641 AAGAAGGCACATCCGACAGA 59.023 50.000 0.00 0.00 40.77 3.41
2642 2697 2.128507 GGAGACGCTCTACCCTGGG 61.129 68.421 12.28 12.28 0.00 4.45
2644 2699 3.851128 GACGCTCTACCCTGGGCC 61.851 72.222 14.08 0.00 0.00 5.80
2645 2700 4.715130 ACGCTCTACCCTGGGCCA 62.715 66.667 14.08 5.85 0.00 5.36
2728 2974 3.181496 TGTGTTGTGAAATTTGTAGCGCA 60.181 39.130 11.47 0.00 0.00 6.09
2834 3778 5.168569 GGAACCCTAAAACTATTTTGCAGC 58.831 41.667 0.00 0.00 34.19 5.25
2899 3843 8.545472 AGCTATCATGTTAAGTTGTTAACCCTA 58.455 33.333 2.48 0.00 45.19 3.53
2983 3927 5.923204 ACTCGATCATTTTTAGGAGATGCT 58.077 37.500 0.00 0.00 0.00 3.79
3138 4083 1.412710 GGGATGCCTCTGTATGTTCGA 59.587 52.381 0.00 0.00 0.00 3.71
3235 4180 7.255139 GGTTCAAATGTGAAGTACTGTAGCTTT 60.255 37.037 0.00 0.00 44.44 3.51
3248 4193 6.373186 ACTGTAGCTTTGTTTGTTCTAACC 57.627 37.500 0.00 0.00 0.00 2.85
3412 4357 2.034066 CCATGGGAAGCACACCGT 59.966 61.111 2.85 0.00 0.00 4.83
3483 4428 3.782523 AGAGATTGGGACTTGCAATCCTA 59.217 43.478 20.32 15.03 36.34 2.94
3569 4514 4.202441 ACTCTGTGAACAACATTTCTGCT 58.798 39.130 0.00 0.00 38.39 4.24
3600 4551 7.994425 TTTCCACATTCAAGAAGTGCTATTA 57.006 32.000 0.00 0.00 32.09 0.98
3657 4608 6.543430 AATTCTCTAGTCAGATCACAGCTT 57.457 37.500 0.00 0.00 0.00 3.74
3746 4697 1.959042 AGCCGTATTGCTTCCTGATG 58.041 50.000 0.00 0.00 38.85 3.07
3772 4723 5.580998 TGGCGGTCTCCTCTAATATATCTT 58.419 41.667 0.00 0.00 0.00 2.40
3867 4833 4.216687 TGGAAGCACTTATAAACCCAAACG 59.783 41.667 0.00 0.00 0.00 3.60
3956 4929 5.894393 TGGTTATTCCAGGTGAAAAAGAACA 59.106 36.000 0.00 0.00 41.93 3.18
4136 5109 5.435291 CAGAAGATAATGGCAGAGGTCTTT 58.565 41.667 0.00 0.00 0.00 2.52
4202 5175 4.202441 CCACCTTTGAATACAGCAGCTAT 58.798 43.478 0.00 0.00 0.00 2.97
4318 5291 0.807667 CCGAAGCACGAAGATGGAGG 60.808 60.000 4.96 0.00 45.77 4.30
4483 5456 4.416505 CAAGACTTGGAATGTTCTCTGC 57.583 45.455 7.35 0.00 0.00 4.26
4512 5485 7.450014 GTGGTATCATAGAAGATCAGGAAGAGA 59.550 40.741 0.00 0.00 0.00 3.10
4550 5523 3.867493 CGTGTGATGCATTGACATCTAGT 59.133 43.478 13.76 0.00 45.51 2.57
4551 5524 5.043248 CGTGTGATGCATTGACATCTAGTA 58.957 41.667 13.76 1.22 45.51 1.82
4552 5525 5.693555 CGTGTGATGCATTGACATCTAGTAT 59.306 40.000 13.76 0.00 45.51 2.12
4587 5560 3.728845 TGAGAAATATTACGAGGGCTGC 58.271 45.455 0.00 0.00 0.00 5.25
4684 5657 6.511282 GCACTTTACTACTTGAGTGTTGTTCC 60.511 42.308 4.52 0.00 41.11 3.62
4686 5659 3.814005 ACTACTTGAGTGTTGTTCCGT 57.186 42.857 0.00 0.00 36.87 4.69
4716 5689 1.818674 GATGGCTGTTACTTTGTGGGG 59.181 52.381 0.00 0.00 0.00 4.96
4766 5741 7.458409 ACTCTGAATTAATTGATGTTGCTGT 57.542 32.000 5.17 0.00 0.00 4.40
4816 5821 6.239515 GGGAGTAGTTTCTTCCAAAGTGTAGA 60.240 42.308 0.00 0.00 33.46 2.59
4824 5829 5.365619 TCTTCCAAAGTGTAGAAACAGGTC 58.634 41.667 0.00 0.00 35.91 3.85
4825 5830 4.764050 TCCAAAGTGTAGAAACAGGTCA 57.236 40.909 0.00 0.00 35.91 4.02
4828 5833 6.126409 TCCAAAGTGTAGAAACAGGTCATTT 58.874 36.000 0.00 0.00 35.91 2.32
4829 5834 6.605594 TCCAAAGTGTAGAAACAGGTCATTTT 59.394 34.615 0.00 0.00 35.91 1.82
4831 5836 7.222611 CCAAAGTGTAGAAACAGGTCATTTTTG 59.777 37.037 0.00 0.00 35.91 2.44
4832 5837 6.391227 AGTGTAGAAACAGGTCATTTTTGG 57.609 37.500 0.00 0.00 35.91 3.28
4833 5838 6.126409 AGTGTAGAAACAGGTCATTTTTGGA 58.874 36.000 0.00 0.00 35.91 3.53
4835 5840 7.942341 AGTGTAGAAACAGGTCATTTTTGGATA 59.058 33.333 0.00 0.00 35.91 2.59
4836 5841 8.739972 GTGTAGAAACAGGTCATTTTTGGATAT 58.260 33.333 0.00 0.00 35.91 1.63
4837 5842 9.308000 TGTAGAAACAGGTCATTTTTGGATATT 57.692 29.630 0.00 0.00 0.00 1.28
4841 5846 9.487790 GAAACAGGTCATTTTTGGATATTTGAA 57.512 29.630 0.00 0.00 0.00 2.69
4842 5847 9.492973 AAACAGGTCATTTTTGGATATTTGAAG 57.507 29.630 0.00 0.00 0.00 3.02
4843 5848 7.099120 ACAGGTCATTTTTGGATATTTGAAGC 58.901 34.615 0.00 0.00 0.00 3.86
4844 5849 6.254157 CAGGTCATTTTTGGATATTTGAAGCG 59.746 38.462 0.00 0.00 0.00 4.68
4845 5850 5.519927 GGTCATTTTTGGATATTTGAAGCGG 59.480 40.000 0.00 0.00 0.00 5.52
4847 5852 4.527509 TTTTTGGATATTTGAAGCGGCA 57.472 36.364 1.45 0.00 0.00 5.69
4848 5853 3.781079 TTTGGATATTTGAAGCGGCAG 57.219 42.857 1.45 0.00 0.00 4.85
4849 5854 1.024271 TGGATATTTGAAGCGGCAGC 58.976 50.000 0.00 0.00 45.58 5.25
4850 5855 0.312102 GGATATTTGAAGCGGCAGCC 59.688 55.000 4.82 0.00 46.67 4.85
4851 5856 1.024271 GATATTTGAAGCGGCAGCCA 58.976 50.000 13.30 0.00 46.67 4.75
4854 5859 0.609662 ATTTGAAGCGGCAGCCATTT 59.390 45.000 13.30 4.50 46.67 2.32
4855 5860 0.392336 TTTGAAGCGGCAGCCATTTT 59.608 45.000 13.30 1.61 46.67 1.82
4869 5943 5.234972 GCAGCCATTTTTGGATATTTGTAGC 59.765 40.000 0.00 0.00 0.00 3.58
4875 5949 2.254546 TGGATATTTGTAGCGGCAGG 57.745 50.000 1.45 0.00 0.00 4.85
4881 5955 5.106673 GGATATTTGTAGCGGCAGGTATTTC 60.107 44.000 1.45 0.00 32.50 2.17
4884 5958 1.828595 TGTAGCGGCAGGTATTTCTGA 59.171 47.619 1.45 0.00 36.93 3.27
4907 5981 4.334552 TGATTTCTACAATCTGGCTTGCA 58.665 39.130 0.00 0.00 0.00 4.08
4962 6036 8.770438 AATAGATTAGTAAATGCAGAGCTAGC 57.230 34.615 6.62 6.62 0.00 3.42
4963 6037 6.418057 AGATTAGTAAATGCAGAGCTAGCT 57.582 37.500 19.45 19.45 0.00 3.32
4964 6038 7.531857 AGATTAGTAAATGCAGAGCTAGCTA 57.468 36.000 19.38 1.43 0.00 3.32
4965 6039 7.601856 AGATTAGTAAATGCAGAGCTAGCTAG 58.398 38.462 19.38 16.84 0.00 3.42
4966 6040 6.716934 TTAGTAAATGCAGAGCTAGCTAGT 57.283 37.500 19.38 5.07 0.00 2.57
4969 6043 6.686630 AGTAAATGCAGAGCTAGCTAGTATG 58.313 40.000 19.38 14.85 0.00 2.39
4970 6044 4.533919 AATGCAGAGCTAGCTAGTATGG 57.466 45.455 19.38 10.67 0.00 2.74
4971 6045 1.615883 TGCAGAGCTAGCTAGTATGGC 59.384 52.381 19.38 19.00 46.31 4.40
4996 6071 4.195334 GGTGGATGATGCCCCGCT 62.195 66.667 0.00 0.00 33.65 5.52
5000 6075 1.294780 GGATGATGCCCCGCTAGAG 59.705 63.158 0.00 0.00 0.00 2.43
5004 6079 2.009681 TGATGCCCCGCTAGAGATTA 57.990 50.000 0.00 0.00 0.00 1.75
5026 6101 5.705397 ATCCCTCTCTTGTTGAATGATGA 57.295 39.130 0.00 0.00 0.00 2.92
5057 6133 5.373812 TCAAAGCTAATAAAGGGAGGGAG 57.626 43.478 0.00 0.00 0.00 4.30
5061 6137 5.107979 AGCTAATAAAGGGAGGGAGGTAT 57.892 43.478 0.00 0.00 0.00 2.73
5062 6138 5.487273 AGCTAATAAAGGGAGGGAGGTATT 58.513 41.667 0.00 0.00 0.00 1.89
5065 6141 7.237887 AGCTAATAAAGGGAGGGAGGTATTTAG 59.762 40.741 0.00 0.00 0.00 1.85
5095 6171 7.566760 ACATGCGTGGATATTTTAGATTTCA 57.433 32.000 11.36 0.00 0.00 2.69
5124 6200 2.789399 AGGGGTGGGTGGATATTTTAGG 59.211 50.000 0.00 0.00 0.00 2.69
5138 6214 9.639563 TGGATATTTTAGGTGCATTTTCTCATA 57.360 29.630 0.00 0.00 0.00 2.15
5139 6215 9.899226 GGATATTTTAGGTGCATTTTCTCATAC 57.101 33.333 0.00 0.00 0.00 2.39
5177 6254 1.229951 ATTCCCAGTGGGCTGAGGA 60.230 57.895 24.75 1.37 45.28 3.71
5178 6255 1.277580 ATTCCCAGTGGGCTGAGGAG 61.278 60.000 24.75 0.00 45.28 3.69
5179 6256 4.106925 CCCAGTGGGCTGAGGAGC 62.107 72.222 17.33 0.00 45.28 4.70
5193 6270 4.032653 GAGCCAGCTCCTCTGACT 57.967 61.111 8.51 0.00 45.72 3.41
5194 6271 2.285824 GAGCCAGCTCCTCTGACTT 58.714 57.895 8.51 0.00 45.72 3.01
5195 6272 0.108233 GAGCCAGCTCCTCTGACTTG 60.108 60.000 8.51 0.00 45.72 3.16
5196 6273 1.744741 GCCAGCTCCTCTGACTTGC 60.745 63.158 0.00 0.00 45.72 4.01
5197 6274 1.675801 CCAGCTCCTCTGACTTGCA 59.324 57.895 0.00 0.00 45.72 4.08
5198 6275 0.391395 CCAGCTCCTCTGACTTGCAG 60.391 60.000 0.00 0.00 45.72 4.41
5199 6276 0.391395 CAGCTCCTCTGACTTGCAGG 60.391 60.000 0.00 0.00 45.72 4.85
5200 6277 0.543883 AGCTCCTCTGACTTGCAGGA 60.544 55.000 1.40 0.00 44.98 3.86
5202 6279 1.265236 CTCCTCTGACTTGCAGGAGT 58.735 55.000 1.40 0.00 45.88 3.85
5203 6280 1.204467 CTCCTCTGACTTGCAGGAGTC 59.796 57.143 10.99 10.99 45.88 3.36
5204 6281 0.248843 CCTCTGACTTGCAGGAGTCC 59.751 60.000 14.49 0.00 44.29 3.85
5205 6282 1.265236 CTCTGACTTGCAGGAGTCCT 58.735 55.000 14.49 5.62 44.29 3.85
5215 6292 1.818642 CAGGAGTCCTGCAAAGGAAG 58.181 55.000 26.03 0.00 45.13 3.46
5216 6293 0.695347 AGGAGTCCTGCAAAGGAAGG 59.305 55.000 12.07 0.00 41.89 3.46
5217 6294 0.322906 GGAGTCCTGCAAAGGAAGGG 60.323 60.000 0.41 0.00 40.73 3.95
5218 6295 0.693049 GAGTCCTGCAAAGGAAGGGA 59.307 55.000 0.00 0.00 40.73 4.20
5219 6296 1.073923 GAGTCCTGCAAAGGAAGGGAA 59.926 52.381 0.00 0.00 40.73 3.97
5220 6297 1.074566 AGTCCTGCAAAGGAAGGGAAG 59.925 52.381 0.00 0.00 40.73 3.46
5221 6298 1.073923 GTCCTGCAAAGGAAGGGAAGA 59.926 52.381 0.00 0.00 40.73 2.87
5222 6299 1.995542 TCCTGCAAAGGAAGGGAAGAT 59.004 47.619 0.00 0.00 40.73 2.40
5223 6300 2.097825 CCTGCAAAGGAAGGGAAGATG 58.902 52.381 0.00 0.00 35.99 2.90
5224 6301 1.475682 CTGCAAAGGAAGGGAAGATGC 59.524 52.381 0.00 0.00 0.00 3.91
5225 6302 1.203038 TGCAAAGGAAGGGAAGATGCA 60.203 47.619 0.00 0.00 39.73 3.96
5226 6303 1.475682 GCAAAGGAAGGGAAGATGCAG 59.524 52.381 0.00 0.00 32.80 4.41
5227 6304 2.800250 CAAAGGAAGGGAAGATGCAGT 58.200 47.619 0.00 0.00 0.00 4.40
5228 6305 2.490903 CAAAGGAAGGGAAGATGCAGTG 59.509 50.000 0.00 0.00 0.00 3.66
5229 6306 0.622665 AGGAAGGGAAGATGCAGTGG 59.377 55.000 0.00 0.00 0.00 4.00
5230 6307 0.329596 GGAAGGGAAGATGCAGTGGT 59.670 55.000 0.00 0.00 0.00 4.16
5231 6308 1.272147 GGAAGGGAAGATGCAGTGGTT 60.272 52.381 0.00 0.00 0.00 3.67
5232 6309 2.519013 GAAGGGAAGATGCAGTGGTTT 58.481 47.619 0.00 0.00 0.00 3.27
5233 6310 2.683211 AGGGAAGATGCAGTGGTTTT 57.317 45.000 0.00 0.00 0.00 2.43
5234 6311 2.519013 AGGGAAGATGCAGTGGTTTTC 58.481 47.619 0.00 0.00 0.00 2.29
5235 6312 2.108952 AGGGAAGATGCAGTGGTTTTCT 59.891 45.455 0.00 0.00 0.00 2.52
5236 6313 2.229784 GGGAAGATGCAGTGGTTTTCTG 59.770 50.000 0.00 0.00 36.18 3.02
5237 6314 2.887152 GGAAGATGCAGTGGTTTTCTGT 59.113 45.455 0.00 0.00 35.60 3.41
5238 6315 3.304928 GGAAGATGCAGTGGTTTTCTGTG 60.305 47.826 0.00 0.00 35.60 3.66
5239 6316 2.936202 AGATGCAGTGGTTTTCTGTGT 58.064 42.857 0.00 0.00 35.60 3.72
5240 6317 4.085357 AGATGCAGTGGTTTTCTGTGTA 57.915 40.909 0.00 0.00 35.60 2.90
5241 6318 4.460263 AGATGCAGTGGTTTTCTGTGTAA 58.540 39.130 0.00 0.00 35.60 2.41
5242 6319 4.887071 AGATGCAGTGGTTTTCTGTGTAAA 59.113 37.500 0.00 0.00 35.60 2.01
5243 6320 5.359576 AGATGCAGTGGTTTTCTGTGTAAAA 59.640 36.000 0.00 0.00 35.60 1.52
5244 6321 5.590530 TGCAGTGGTTTTCTGTGTAAAAT 57.409 34.783 0.00 0.00 35.60 1.82
5245 6322 6.701145 TGCAGTGGTTTTCTGTGTAAAATA 57.299 33.333 0.00 0.00 35.60 1.40
5246 6323 7.101652 TGCAGTGGTTTTCTGTGTAAAATAA 57.898 32.000 0.00 0.00 35.60 1.40
5247 6324 6.975772 TGCAGTGGTTTTCTGTGTAAAATAAC 59.024 34.615 0.00 0.00 35.60 1.89
5248 6325 6.141685 GCAGTGGTTTTCTGTGTAAAATAACG 59.858 38.462 0.00 0.00 35.60 3.18
5249 6326 6.635239 CAGTGGTTTTCTGTGTAAAATAACGG 59.365 38.462 0.00 0.00 31.43 4.44
5250 6327 6.543100 AGTGGTTTTCTGTGTAAAATAACGGA 59.457 34.615 0.00 0.00 31.43 4.69
5251 6328 6.854381 GTGGTTTTCTGTGTAAAATAACGGAG 59.146 38.462 0.00 0.00 33.38 4.63
5252 6329 6.016943 TGGTTTTCTGTGTAAAATAACGGAGG 60.017 38.462 0.00 0.00 33.38 4.30
5253 6330 6.376177 GTTTTCTGTGTAAAATAACGGAGGG 58.624 40.000 0.00 0.00 33.38 4.30
5254 6331 5.486735 TTCTGTGTAAAATAACGGAGGGA 57.513 39.130 0.00 0.00 33.38 4.20
5255 6332 5.486735 TCTGTGTAAAATAACGGAGGGAA 57.513 39.130 0.00 0.00 0.00 3.97
5256 6333 5.484715 TCTGTGTAAAATAACGGAGGGAAG 58.515 41.667 0.00 0.00 0.00 3.46
5257 6334 5.012354 TCTGTGTAAAATAACGGAGGGAAGT 59.988 40.000 0.00 0.00 0.00 3.01
5258 6335 5.240121 TGTGTAAAATAACGGAGGGAAGTC 58.760 41.667 0.00 0.00 0.00 3.01
5259 6336 5.221682 TGTGTAAAATAACGGAGGGAAGTCA 60.222 40.000 0.00 0.00 0.00 3.41
5260 6337 5.350640 GTGTAAAATAACGGAGGGAAGTCAG 59.649 44.000 0.00 0.00 0.00 3.51
5261 6338 4.903045 AAAATAACGGAGGGAAGTCAGA 57.097 40.909 0.00 0.00 0.00 3.27
5262 6339 4.473477 AAATAACGGAGGGAAGTCAGAG 57.527 45.455 0.00 0.00 0.00 3.35
5263 6340 2.893215 TAACGGAGGGAAGTCAGAGA 57.107 50.000 0.00 0.00 0.00 3.10
5264 6341 1.551452 AACGGAGGGAAGTCAGAGAG 58.449 55.000 0.00 0.00 0.00 3.20
5265 6342 0.406361 ACGGAGGGAAGTCAGAGAGT 59.594 55.000 0.00 0.00 0.00 3.24
5266 6343 1.634459 ACGGAGGGAAGTCAGAGAGTA 59.366 52.381 0.00 0.00 0.00 2.59
5267 6344 2.041350 ACGGAGGGAAGTCAGAGAGTAA 59.959 50.000 0.00 0.00 0.00 2.24
5268 6345 3.090037 CGGAGGGAAGTCAGAGAGTAAA 58.910 50.000 0.00 0.00 0.00 2.01
5269 6346 3.129638 CGGAGGGAAGTCAGAGAGTAAAG 59.870 52.174 0.00 0.00 0.00 1.85
5270 6347 4.090819 GGAGGGAAGTCAGAGAGTAAAGT 58.909 47.826 0.00 0.00 0.00 2.66
5271 6348 5.262804 GGAGGGAAGTCAGAGAGTAAAGTA 58.737 45.833 0.00 0.00 0.00 2.24
5272 6349 5.715753 GGAGGGAAGTCAGAGAGTAAAGTAA 59.284 44.000 0.00 0.00 0.00 2.24
5273 6350 6.127563 GGAGGGAAGTCAGAGAGTAAAGTAAG 60.128 46.154 0.00 0.00 0.00 2.34
5274 6351 5.186215 AGGGAAGTCAGAGAGTAAAGTAAGC 59.814 44.000 0.00 0.00 0.00 3.09
5275 6352 5.047235 GGGAAGTCAGAGAGTAAAGTAAGCA 60.047 44.000 0.00 0.00 0.00 3.91
5276 6353 5.865013 GGAAGTCAGAGAGTAAAGTAAGCAC 59.135 44.000 0.00 0.00 0.00 4.40
5277 6354 6.294843 GGAAGTCAGAGAGTAAAGTAAGCACT 60.295 42.308 0.00 0.00 36.19 4.40
5278 6355 6.019779 AGTCAGAGAGTAAAGTAAGCACTG 57.980 41.667 0.00 0.00 34.36 3.66
5279 6356 5.536916 AGTCAGAGAGTAAAGTAAGCACTGT 59.463 40.000 0.00 0.00 34.36 3.55
5280 6357 6.715718 AGTCAGAGAGTAAAGTAAGCACTGTA 59.284 38.462 0.00 0.00 34.36 2.74
5281 6358 7.024768 GTCAGAGAGTAAAGTAAGCACTGTAG 58.975 42.308 0.00 0.00 34.36 2.74
5282 6359 6.940867 TCAGAGAGTAAAGTAAGCACTGTAGA 59.059 38.462 0.00 0.00 34.36 2.59
5283 6360 7.024768 CAGAGAGTAAAGTAAGCACTGTAGAC 58.975 42.308 0.00 0.00 34.36 2.59
5284 6361 6.715718 AGAGAGTAAAGTAAGCACTGTAGACA 59.284 38.462 0.00 0.00 34.36 3.41
5285 6362 7.230913 AGAGAGTAAAGTAAGCACTGTAGACAA 59.769 37.037 0.00 0.00 34.36 3.18
5286 6363 7.723324 AGAGTAAAGTAAGCACTGTAGACAAA 58.277 34.615 0.00 0.00 34.36 2.83
5287 6364 8.202137 AGAGTAAAGTAAGCACTGTAGACAAAA 58.798 33.333 0.00 0.00 34.36 2.44
5288 6365 8.904099 AGTAAAGTAAGCACTGTAGACAAAAT 57.096 30.769 0.00 0.00 34.36 1.82
5289 6366 9.991906 AGTAAAGTAAGCACTGTAGACAAAATA 57.008 29.630 0.00 0.00 34.36 1.40
5292 6369 7.347508 AGTAAGCACTGTAGACAAAATAACG 57.652 36.000 0.00 0.00 32.25 3.18
5293 6370 6.927381 AGTAAGCACTGTAGACAAAATAACGT 59.073 34.615 0.00 0.00 32.25 3.99
5294 6371 8.084073 AGTAAGCACTGTAGACAAAATAACGTA 58.916 33.333 0.00 0.00 32.25 3.57
5295 6372 6.946229 AGCACTGTAGACAAAATAACGTAG 57.054 37.500 0.00 0.00 0.00 3.51
5296 6373 5.867716 AGCACTGTAGACAAAATAACGTAGG 59.132 40.000 0.00 0.00 0.00 3.18
5297 6374 5.445540 GCACTGTAGACAAAATAACGTAGGC 60.446 44.000 0.00 0.00 0.00 3.93
5298 6375 4.860907 ACTGTAGACAAAATAACGTAGGCG 59.139 41.667 0.00 0.00 44.93 5.52
5299 6376 5.058149 TGTAGACAAAATAACGTAGGCGA 57.942 39.130 0.00 0.00 42.00 5.54
5300 6377 5.653507 TGTAGACAAAATAACGTAGGCGAT 58.346 37.500 0.00 0.00 42.00 4.58
5301 6378 6.101332 TGTAGACAAAATAACGTAGGCGATT 58.899 36.000 0.00 0.00 42.00 3.34
5302 6379 7.257003 TGTAGACAAAATAACGTAGGCGATTA 58.743 34.615 0.00 0.00 42.00 1.75
5303 6380 6.579491 AGACAAAATAACGTAGGCGATTAC 57.421 37.500 0.00 0.00 42.00 1.89
5304 6381 6.335777 AGACAAAATAACGTAGGCGATTACT 58.664 36.000 0.00 0.00 42.00 2.24
5305 6382 6.255020 AGACAAAATAACGTAGGCGATTACTG 59.745 38.462 0.00 0.00 42.00 2.74
5306 6383 5.870978 ACAAAATAACGTAGGCGATTACTGT 59.129 36.000 0.00 0.00 42.00 3.55
5307 6384 7.035004 ACAAAATAACGTAGGCGATTACTGTA 58.965 34.615 0.00 0.00 42.00 2.74
5308 6385 7.221452 ACAAAATAACGTAGGCGATTACTGTAG 59.779 37.037 0.00 0.00 42.00 2.74
5309 6386 2.770699 ACGTAGGCGATTACTGTAGC 57.229 50.000 0.00 0.00 42.00 3.58
5310 6387 1.003116 ACGTAGGCGATTACTGTAGCG 60.003 52.381 7.51 7.51 42.00 4.26
5311 6388 1.262417 CGTAGGCGATTACTGTAGCGA 59.738 52.381 13.81 0.00 41.33 4.93
5312 6389 2.286595 CGTAGGCGATTACTGTAGCGAA 60.287 50.000 13.81 0.00 41.33 4.70
5313 6390 3.608707 CGTAGGCGATTACTGTAGCGAAT 60.609 47.826 13.81 5.89 41.33 3.34
5314 6391 3.454371 AGGCGATTACTGTAGCGAATT 57.546 42.857 13.81 0.00 0.00 2.17
5315 6392 4.579454 AGGCGATTACTGTAGCGAATTA 57.421 40.909 13.81 0.00 0.00 1.40
5316 6393 4.296690 AGGCGATTACTGTAGCGAATTAC 58.703 43.478 13.81 0.00 0.00 1.89
5317 6394 4.037684 AGGCGATTACTGTAGCGAATTACT 59.962 41.667 13.81 3.66 0.00 2.24
5318 6395 4.148348 GGCGATTACTGTAGCGAATTACTG 59.852 45.833 13.81 0.00 0.00 2.74
5319 6396 4.375105 GCGATTACTGTAGCGAATTACTGC 60.375 45.833 13.81 0.00 0.00 4.40
5320 6397 4.738252 CGATTACTGTAGCGAATTACTGCA 59.262 41.667 6.38 0.00 0.00 4.41
5322 6399 3.868757 ACTGTAGCGAATTACTGCAGA 57.131 42.857 23.35 0.00 46.96 4.26
5323 6400 4.392921 ACTGTAGCGAATTACTGCAGAT 57.607 40.909 23.35 7.41 46.96 2.90
5324 6401 5.515797 ACTGTAGCGAATTACTGCAGATA 57.484 39.130 23.35 7.93 46.96 1.98
5325 6402 5.902681 ACTGTAGCGAATTACTGCAGATAA 58.097 37.500 23.35 15.12 46.96 1.75
5326 6403 5.980116 ACTGTAGCGAATTACTGCAGATAAG 59.020 40.000 23.35 7.47 46.96 1.73
5327 6404 4.745125 TGTAGCGAATTACTGCAGATAAGC 59.255 41.667 23.35 16.70 0.00 3.09
5328 6405 3.797039 AGCGAATTACTGCAGATAAGCA 58.203 40.909 23.35 0.00 43.35 3.91
5329 6406 4.384056 AGCGAATTACTGCAGATAAGCAT 58.616 39.130 23.35 0.00 44.68 3.79
5330 6407 4.212847 AGCGAATTACTGCAGATAAGCATG 59.787 41.667 23.35 4.06 44.68 4.06
5331 6408 4.024556 GCGAATTACTGCAGATAAGCATGT 60.025 41.667 23.35 0.00 44.68 3.21
5332 6409 5.438117 CGAATTACTGCAGATAAGCATGTG 58.562 41.667 23.35 0.00 44.68 3.21
5333 6410 5.007039 CGAATTACTGCAGATAAGCATGTGT 59.993 40.000 23.35 0.00 44.68 3.72
5334 6411 6.200854 CGAATTACTGCAGATAAGCATGTGTA 59.799 38.462 23.35 0.00 44.68 2.90
5335 6412 7.095481 CGAATTACTGCAGATAAGCATGTGTAT 60.095 37.037 23.35 0.00 44.68 2.29
5336 6413 6.849588 TTACTGCAGATAAGCATGTGTATG 57.150 37.500 23.35 0.00 44.68 2.39
5337 6414 5.027293 ACTGCAGATAAGCATGTGTATGA 57.973 39.130 23.35 0.00 44.68 2.15
5338 6415 5.430886 ACTGCAGATAAGCATGTGTATGAA 58.569 37.500 23.35 0.00 44.68 2.57
5339 6416 6.060136 ACTGCAGATAAGCATGTGTATGAAT 58.940 36.000 23.35 0.00 44.68 2.57
5340 6417 6.204301 ACTGCAGATAAGCATGTGTATGAATC 59.796 38.462 23.35 0.00 44.68 2.52
5341 6418 6.056884 TGCAGATAAGCATGTGTATGAATCA 58.943 36.000 0.00 0.00 40.11 2.57
5342 6419 6.017687 TGCAGATAAGCATGTGTATGAATCAC 60.018 38.462 0.00 0.00 40.11 3.06
5343 6420 6.204301 GCAGATAAGCATGTGTATGAATCACT 59.796 38.462 0.00 0.00 36.36 3.41
5344 6421 7.570875 GCAGATAAGCATGTGTATGAATCACTC 60.571 40.741 0.00 0.00 36.36 3.51
5345 6422 6.644181 AGATAAGCATGTGTATGAATCACTCG 59.356 38.462 0.00 0.00 36.36 4.18
5346 6423 4.128925 AGCATGTGTATGAATCACTCGT 57.871 40.909 0.00 0.00 36.36 4.18
5347 6424 3.867493 AGCATGTGTATGAATCACTCGTG 59.133 43.478 0.00 0.00 36.36 4.35
5348 6425 3.544834 GCATGTGTATGAATCACTCGTGC 60.545 47.826 6.12 6.12 42.01 5.34
5349 6426 2.258755 TGTGTATGAATCACTCGTGCG 58.741 47.619 0.00 0.00 36.83 5.34
5350 6427 2.259618 GTGTATGAATCACTCGTGCGT 58.740 47.619 0.00 0.00 33.59 5.24
5351 6428 2.028045 GTGTATGAATCACTCGTGCGTG 59.972 50.000 0.00 0.00 36.25 5.34
5352 6429 1.005975 GTATGAATCACTCGTGCGTGC 60.006 52.381 0.00 0.00 34.92 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.263765 TAGTGGCCTAGTGGGGTAGG 59.736 60.000 3.32 0.00 42.45 3.18
37 69 1.382695 GGAAGGATCCCCCGTGAGA 60.383 63.158 8.55 0.00 40.10 3.27
236 269 0.249322 ATCTACAATCGAACCGGCCG 60.249 55.000 21.04 21.04 0.00 6.13
313 350 5.350365 TCGAAATCTACCAAATTTCCTCACG 59.650 40.000 0.00 0.00 39.07 4.35
568 610 7.387119 TCCACTGTAGCGTCGATTATAATAT 57.613 36.000 0.00 0.00 0.00 1.28
625 667 3.639094 TCTTTTTGGCGAAAGGAAATGGA 59.361 39.130 9.39 0.00 37.27 3.41
646 688 4.013050 CTCTGAAATGGGAGGAACCTTTC 58.987 47.826 0.00 0.00 38.98 2.62
890 935 6.740944 TTATCTCCATCTTCGTATGGGAAA 57.259 37.500 12.20 2.37 45.57 3.13
946 991 5.877012 AGATATGTAACTGAAACACCTGCAG 59.123 40.000 6.78 6.78 35.81 4.41
989 1035 8.461222 TCCATAGAAATGACATTTTGCTAACTG 58.539 33.333 14.46 8.40 34.84 3.16
1021 1067 0.606944 TCCGTTGTACCACCATTGCC 60.607 55.000 0.00 0.00 0.00 4.52
1054 1100 4.133078 ACTTTCTCTTGCTGTTCTTCCAG 58.867 43.478 0.00 0.00 35.49 3.86
1082 1128 8.776061 ATAGAGCTCTAAGGTTGAAGAATAGT 57.224 34.615 26.62 2.12 31.39 2.12
1086 1132 7.680730 ACAAATAGAGCTCTAAGGTTGAAGAA 58.319 34.615 31.60 12.52 31.39 2.52
1095 1141 5.978919 CAGCTGAGACAAATAGAGCTCTAAG 59.021 44.000 26.62 20.22 37.93 2.18
1116 1162 4.201960 GGCCTTAAGATTAAGCACTTCAGC 60.202 45.833 3.36 3.73 38.99 4.26
1159 1205 5.592104 TTCGTACCTCATTTATCTGCTCA 57.408 39.130 0.00 0.00 0.00 4.26
1204 1250 3.933861 AGGAAACCCTGTATTGCTAGG 57.066 47.619 0.00 0.00 31.48 3.02
1234 1280 4.261238 GCTCGAAGGAATCTCAGTATCGAA 60.261 45.833 0.00 0.00 37.39 3.71
1395 1442 6.541641 TGCTCTTTTGTTTTGCCAATAAACAT 59.458 30.769 0.00 0.00 42.95 2.71
1396 1443 5.877012 TGCTCTTTTGTTTTGCCAATAAACA 59.123 32.000 0.00 0.00 42.09 2.83
1429 1476 7.224753 GCTCTTCCAATTTCTCGTTGATGTATA 59.775 37.037 0.00 0.00 0.00 1.47
1431 1478 5.351465 GCTCTTCCAATTTCTCGTTGATGTA 59.649 40.000 0.00 0.00 0.00 2.29
1437 1484 3.077359 CCTGCTCTTCCAATTTCTCGTT 58.923 45.455 0.00 0.00 0.00 3.85
1467 1514 7.277174 ACTAAACTTACTCTGCATGCTTTTT 57.723 32.000 20.33 8.52 0.00 1.94
1492 1540 7.044798 GTCACTGACAAGCTTATTCCTCTTAT 58.955 38.462 0.00 0.00 32.09 1.73
1495 1543 4.284490 TGTCACTGACAAGCTTATTCCTCT 59.716 41.667 9.54 0.00 39.78 3.69
1551 1600 7.759489 TTTCAGCCAACAGTTCAGTAATATT 57.241 32.000 0.00 0.00 0.00 1.28
1552 1601 7.230510 TGTTTTCAGCCAACAGTTCAGTAATAT 59.769 33.333 0.00 0.00 30.49 1.28
1558 1607 3.781079 TGTTTTCAGCCAACAGTTCAG 57.219 42.857 0.00 0.00 30.49 3.02
1627 1677 9.990868 AGTTTATATTACCTTGAAAACCAGGAT 57.009 29.630 0.00 0.00 0.00 3.24
1651 1701 5.244626 CCTGGATGTTGAAAGGATGAAAAGT 59.755 40.000 0.00 0.00 30.92 2.66
1668 1718 4.158949 TCATGTGCAATTTCTTCCTGGATG 59.841 41.667 0.00 0.00 0.00 3.51
1781 1831 8.250143 TCCAGATATTTACTCTGCAGTGAATA 57.750 34.615 21.96 15.32 42.34 1.75
1948 1998 2.766313 TGCTATGTCGCTTTCACACTT 58.234 42.857 0.00 0.00 0.00 3.16
1973 2023 5.304686 AGAGTTGGTCTAATTGTGGTTCA 57.695 39.130 0.00 0.00 31.71 3.18
2004 2054 2.646175 GGCCGGCGAGGATATAGCA 61.646 63.158 22.54 0.00 45.00 3.49
2066 2117 0.533308 ACTTTTAGCGGGCGTGTTCA 60.533 50.000 0.00 0.00 0.00 3.18
2338 2391 2.281070 CCAGCCTCAGCGTTGTGT 60.281 61.111 0.00 0.00 46.67 3.72
2425 2478 2.044650 ACACTCCGCCTACCGCTA 60.045 61.111 0.00 0.00 35.03 4.26
2501 2556 4.537433 GAGCTCCGCATCCGCCTT 62.537 66.667 0.87 0.00 33.11 4.35
2629 2684 3.854669 CTGGCCCAGGGTAGAGCG 61.855 72.222 7.55 0.00 0.00 5.03
2631 2686 3.483869 GGCTGGCCCAGGGTAGAG 61.484 72.222 13.78 1.62 31.21 2.43
2728 2974 9.260002 CCATACTGCAAATTCAAAAACTAGTTT 57.740 29.630 15.22 15.22 0.00 2.66
2740 2988 5.120830 CCGCTATAGTCCATACTGCAAATTC 59.879 44.000 0.84 0.00 36.36 2.17
2834 3778 4.887748 AGCAGATCCTGTATAAATCGGTG 58.112 43.478 0.00 0.00 33.43 4.94
2917 3861 9.436957 TGAACTTCTTAAAGGTTGATAGATCAC 57.563 33.333 0.00 0.00 35.11 3.06
3033 3977 6.069994 TGCTTCCCAAGATTCATGCATATTA 58.930 36.000 0.00 0.00 0.00 0.98
3116 4061 0.469917 AACATACAGAGGCATCCCCG 59.530 55.000 0.00 0.00 39.21 5.73
3138 4083 8.506168 TTGAGAGTCAACACAAAACTAGAAAT 57.494 30.769 0.00 0.00 30.26 2.17
3166 4111 3.242867 TCCAGACTTCCAGAGTGATGTT 58.757 45.455 0.00 0.00 39.19 2.71
3235 4180 2.223386 GCAAGCACGGTTAGAACAAACA 60.223 45.455 0.00 0.00 0.00 2.83
3248 4193 8.523464 GTTATATTTCAACATTAAGCAAGCACG 58.477 33.333 0.00 0.00 0.00 5.34
3279 4224 1.358787 TGTTCCTTCCCCGAGGTAGTA 59.641 52.381 0.00 0.00 38.04 1.82
3412 4357 1.152204 TCTCCCGGGTCACCTTCAA 60.152 57.895 22.86 0.00 33.28 2.69
3569 4514 7.360776 GCACTTCTTGAATGTGGAAAACAAAAA 60.361 33.333 11.72 0.00 43.61 1.94
3600 4551 5.677091 GCAAAGAATTGTCGAATACTGGCAT 60.677 40.000 0.00 0.00 38.85 4.40
3657 4608 6.252995 AGACAAATTGGTGGGATAGCTAAAA 58.747 36.000 0.00 0.00 0.00 1.52
3730 4681 3.731867 GCCAAACATCAGGAAGCAATACG 60.732 47.826 0.00 0.00 0.00 3.06
3746 4697 2.693267 ATTAGAGGAGACCGCCAAAC 57.307 50.000 0.00 0.00 0.00 2.93
3867 4833 5.751243 AATGATATTTCTAACGTGCCCAC 57.249 39.130 0.00 0.00 0.00 4.61
3878 4844 9.265901 CCGACAAATCTGACTAATGATATTTCT 57.734 33.333 0.00 0.00 0.00 2.52
3946 4919 2.459934 CCAGTGCGGTTGTTCTTTTTC 58.540 47.619 0.00 0.00 0.00 2.29
4136 5109 0.969149 AGTCGAGCTTGTCCATGTCA 59.031 50.000 0.00 0.00 0.00 3.58
4202 5175 2.857483 TCCTCTTTCATTTGTTCCGCA 58.143 42.857 0.00 0.00 0.00 5.69
4251 5224 2.264166 GCTTGAGGCGTCAGAGCT 59.736 61.111 23.92 0.00 35.57 4.09
4483 5456 4.081972 CCTGATCTTCTATGATACCACGGG 60.082 50.000 0.00 0.00 0.00 5.28
4512 5485 1.152756 ACGTTCTGGCCCAAGCTTT 60.153 52.632 0.00 0.00 39.73 3.51
4684 5657 6.378582 AGTAACAGCCATCAAACATAAAACG 58.621 36.000 0.00 0.00 0.00 3.60
4686 5659 8.200792 ACAAAGTAACAGCCATCAAACATAAAA 58.799 29.630 0.00 0.00 0.00 1.52
4716 5689 6.261826 AGCTAATTTCCATACTTGTCATCAGC 59.738 38.462 0.00 0.00 0.00 4.26
4784 5760 5.209659 TGGAAGAAACTACTCCCTCCTATC 58.790 45.833 0.00 0.00 0.00 2.08
4787 5763 3.562108 TGGAAGAAACTACTCCCTCCT 57.438 47.619 0.00 0.00 0.00 3.69
4816 5821 9.492973 CTTCAAATATCCAAAAATGACCTGTTT 57.507 29.630 0.00 0.00 0.00 2.83
4820 5825 6.332630 CGCTTCAAATATCCAAAAATGACCT 58.667 36.000 0.00 0.00 0.00 3.85
4824 5829 4.869297 TGCCGCTTCAAATATCCAAAAATG 59.131 37.500 0.00 0.00 0.00 2.32
4825 5830 5.083533 TGCCGCTTCAAATATCCAAAAAT 57.916 34.783 0.00 0.00 0.00 1.82
4828 5833 2.159254 GCTGCCGCTTCAAATATCCAAA 60.159 45.455 0.00 0.00 0.00 3.28
4829 5834 1.405105 GCTGCCGCTTCAAATATCCAA 59.595 47.619 0.00 0.00 0.00 3.53
4831 5836 0.312102 GGCTGCCGCTTCAAATATCC 59.688 55.000 1.35 0.00 36.09 2.59
4832 5837 1.024271 TGGCTGCCGCTTCAAATATC 58.976 50.000 14.98 0.00 36.09 1.63
4833 5838 1.696063 ATGGCTGCCGCTTCAAATAT 58.304 45.000 14.98 0.00 36.09 1.28
4835 5840 0.609662 AAATGGCTGCCGCTTCAAAT 59.390 45.000 14.98 0.00 36.09 2.32
4836 5841 0.392336 AAAATGGCTGCCGCTTCAAA 59.608 45.000 14.98 0.00 36.09 2.69
4837 5842 0.392336 AAAAATGGCTGCCGCTTCAA 59.608 45.000 14.98 0.00 36.09 2.69
4838 5843 0.319727 CAAAAATGGCTGCCGCTTCA 60.320 50.000 14.98 0.00 36.09 3.02
4839 5844 1.015607 CCAAAAATGGCTGCCGCTTC 61.016 55.000 14.98 0.00 36.09 3.86
4841 5846 1.259840 ATCCAAAAATGGCTGCCGCT 61.260 50.000 14.98 0.27 36.09 5.52
4842 5847 0.459489 TATCCAAAAATGGCTGCCGC 59.541 50.000 14.98 0.00 0.00 6.53
4843 5848 3.457610 AATATCCAAAAATGGCTGCCG 57.542 42.857 14.98 0.00 0.00 5.69
4844 5849 4.516323 ACAAATATCCAAAAATGGCTGCC 58.484 39.130 12.87 12.87 0.00 4.85
4845 5850 5.234972 GCTACAAATATCCAAAAATGGCTGC 59.765 40.000 0.00 0.00 0.00 5.25
4847 5852 5.451798 CCGCTACAAATATCCAAAAATGGCT 60.452 40.000 0.00 0.00 0.00 4.75
4848 5853 4.744631 CCGCTACAAATATCCAAAAATGGC 59.255 41.667 0.00 0.00 0.00 4.40
4849 5854 4.744631 GCCGCTACAAATATCCAAAAATGG 59.255 41.667 0.00 0.00 0.00 3.16
4850 5855 5.347342 TGCCGCTACAAATATCCAAAAATG 58.653 37.500 0.00 0.00 0.00 2.32
4851 5856 5.451798 CCTGCCGCTACAAATATCCAAAAAT 60.452 40.000 0.00 0.00 0.00 1.82
4854 5859 2.948979 CCTGCCGCTACAAATATCCAAA 59.051 45.455 0.00 0.00 0.00 3.28
4855 5860 2.092646 ACCTGCCGCTACAAATATCCAA 60.093 45.455 0.00 0.00 0.00 3.53
4869 5943 4.818546 AGAAATCATCAGAAATACCTGCCG 59.181 41.667 0.00 0.00 34.28 5.69
4881 5955 6.726230 CAAGCCAGATTGTAGAAATCATCAG 58.274 40.000 1.30 0.00 0.00 2.90
4884 5958 4.951715 TGCAAGCCAGATTGTAGAAATCAT 59.048 37.500 0.00 0.00 32.56 2.45
4907 5981 8.498054 TGATCAAAATAAATTCGAGAGAGCTT 57.502 30.769 0.00 0.00 43.69 3.74
4947 6021 5.567623 GCCATACTAGCTAGCTCTGCATTTA 60.568 44.000 23.26 0.00 0.00 1.40
4954 6028 6.409234 CCTCTATAGCCATACTAGCTAGCTCT 60.409 46.154 23.26 12.72 45.52 4.09
4955 6029 5.763204 CCTCTATAGCCATACTAGCTAGCTC 59.237 48.000 23.26 4.70 45.52 4.09
4956 6030 5.398581 CCCTCTATAGCCATACTAGCTAGCT 60.399 48.000 23.12 23.12 45.52 3.32
4957 6031 4.825085 CCCTCTATAGCCATACTAGCTAGC 59.175 50.000 20.91 6.62 45.52 3.42
4958 6032 5.825679 CACCCTCTATAGCCATACTAGCTAG 59.174 48.000 19.44 19.44 45.52 3.42
4959 6033 5.340110 CCACCCTCTATAGCCATACTAGCTA 60.340 48.000 0.00 0.00 46.32 3.32
4961 6035 3.702045 CCACCCTCTATAGCCATACTAGC 59.298 52.174 0.00 0.00 33.29 3.42
4962 6036 5.194473 TCCACCCTCTATAGCCATACTAG 57.806 47.826 0.00 0.00 33.29 2.57
4963 6037 5.255443 TCATCCACCCTCTATAGCCATACTA 59.745 44.000 0.00 0.00 34.64 1.82
4964 6038 4.045974 TCATCCACCCTCTATAGCCATACT 59.954 45.833 0.00 0.00 0.00 2.12
4965 6039 4.353777 TCATCCACCCTCTATAGCCATAC 58.646 47.826 0.00 0.00 0.00 2.39
4966 6040 4.692523 TCATCCACCCTCTATAGCCATA 57.307 45.455 0.00 0.00 0.00 2.74
4969 6043 2.093235 GCATCATCCACCCTCTATAGCC 60.093 54.545 0.00 0.00 0.00 3.93
4970 6044 2.093235 GGCATCATCCACCCTCTATAGC 60.093 54.545 0.00 0.00 0.00 2.97
4971 6045 2.503356 GGGCATCATCCACCCTCTATAG 59.497 54.545 0.00 0.00 40.75 1.31
4973 6047 1.366319 GGGCATCATCCACCCTCTAT 58.634 55.000 0.00 0.00 40.75 1.98
4975 6049 2.081161 GGGGCATCATCCACCCTCT 61.081 63.158 0.00 0.00 43.68 3.69
4976 6050 2.517919 GGGGCATCATCCACCCTC 59.482 66.667 0.00 0.00 43.68 4.30
4977 6051 3.492353 CGGGGCATCATCCACCCT 61.492 66.667 0.00 0.00 43.68 4.34
5000 6075 7.935755 TCATCATTCAACAAGAGAGGGATAATC 59.064 37.037 0.00 0.00 0.00 1.75
5004 6079 5.705397 TCATCATTCAACAAGAGAGGGAT 57.295 39.130 0.00 0.00 0.00 3.85
5026 6101 9.528489 TCCCTTTATTAGCTTTGATAACTGTTT 57.472 29.630 0.00 0.00 0.00 2.83
5124 6200 4.572389 AGTCCATCGTATGAGAAAATGCAC 59.428 41.667 0.00 0.00 0.00 4.57
5179 6256 0.391395 CTGCAAGTCAGAGGAGCTGG 60.391 60.000 0.00 0.00 45.72 4.85
5180 6257 0.391395 CCTGCAAGTCAGAGGAGCTG 60.391 60.000 0.00 0.00 45.72 4.24
5181 6258 0.543883 TCCTGCAAGTCAGAGGAGCT 60.544 55.000 0.00 0.00 45.72 4.09
5182 6259 0.108233 CTCCTGCAAGTCAGAGGAGC 60.108 60.000 0.00 0.00 44.93 4.70
5184 6261 1.261480 GACTCCTGCAAGTCAGAGGA 58.739 55.000 12.68 1.34 45.72 3.71
5185 6262 0.248843 GGACTCCTGCAAGTCAGAGG 59.751 60.000 17.98 0.38 46.15 3.69
5186 6263 1.067000 CAGGACTCCTGCAAGTCAGAG 60.067 57.143 17.98 8.00 45.13 3.35
5187 6264 0.972134 CAGGACTCCTGCAAGTCAGA 59.028 55.000 17.98 0.00 45.13 3.27
5188 6265 3.529252 CAGGACTCCTGCAAGTCAG 57.471 57.895 17.98 7.98 45.13 3.51
5203 6280 2.097825 CATCTTCCCTTCCTTTGCAGG 58.902 52.381 0.00 0.00 42.50 4.85
5204 6281 1.475682 GCATCTTCCCTTCCTTTGCAG 59.524 52.381 0.00 0.00 0.00 4.41
5205 6282 1.203038 TGCATCTTCCCTTCCTTTGCA 60.203 47.619 0.00 0.00 36.37 4.08
5206 6283 1.475682 CTGCATCTTCCCTTCCTTTGC 59.524 52.381 0.00 0.00 0.00 3.68
5207 6284 2.490903 CACTGCATCTTCCCTTCCTTTG 59.509 50.000 0.00 0.00 0.00 2.77
5208 6285 2.556114 CCACTGCATCTTCCCTTCCTTT 60.556 50.000 0.00 0.00 0.00 3.11
5209 6286 1.005215 CCACTGCATCTTCCCTTCCTT 59.995 52.381 0.00 0.00 0.00 3.36
5210 6287 0.622665 CCACTGCATCTTCCCTTCCT 59.377 55.000 0.00 0.00 0.00 3.36
5211 6288 0.329596 ACCACTGCATCTTCCCTTCC 59.670 55.000 0.00 0.00 0.00 3.46
5212 6289 2.206576 AACCACTGCATCTTCCCTTC 57.793 50.000 0.00 0.00 0.00 3.46
5213 6290 2.683211 AAACCACTGCATCTTCCCTT 57.317 45.000 0.00 0.00 0.00 3.95
5214 6291 2.108952 AGAAAACCACTGCATCTTCCCT 59.891 45.455 0.00 0.00 0.00 4.20
5215 6292 2.229784 CAGAAAACCACTGCATCTTCCC 59.770 50.000 0.00 0.00 0.00 3.97
5216 6293 2.887152 ACAGAAAACCACTGCATCTTCC 59.113 45.455 0.00 0.00 38.74 3.46
5217 6294 3.316308 ACACAGAAAACCACTGCATCTTC 59.684 43.478 0.00 0.00 38.74 2.87
5218 6295 3.290710 ACACAGAAAACCACTGCATCTT 58.709 40.909 0.00 0.00 38.74 2.40
5219 6296 2.936202 ACACAGAAAACCACTGCATCT 58.064 42.857 0.00 0.00 38.74 2.90
5220 6297 4.829064 TTACACAGAAAACCACTGCATC 57.171 40.909 0.00 0.00 38.74 3.91
5221 6298 5.590530 TTTTACACAGAAAACCACTGCAT 57.409 34.783 0.00 0.00 38.74 3.96
5222 6299 5.590530 ATTTTACACAGAAAACCACTGCA 57.409 34.783 0.00 0.00 38.74 4.41
5223 6300 6.141685 CGTTATTTTACACAGAAAACCACTGC 59.858 38.462 0.00 0.00 38.74 4.40
5224 6301 6.635239 CCGTTATTTTACACAGAAAACCACTG 59.365 38.462 0.00 0.00 40.68 3.66
5225 6302 6.543100 TCCGTTATTTTACACAGAAAACCACT 59.457 34.615 0.00 0.00 31.35 4.00
5226 6303 6.727215 TCCGTTATTTTACACAGAAAACCAC 58.273 36.000 0.00 0.00 31.35 4.16
5227 6304 6.016943 CCTCCGTTATTTTACACAGAAAACCA 60.017 38.462 0.00 0.00 31.35 3.67
5228 6305 6.376177 CCTCCGTTATTTTACACAGAAAACC 58.624 40.000 0.00 0.00 31.35 3.27
5229 6306 6.205270 TCCCTCCGTTATTTTACACAGAAAAC 59.795 38.462 0.00 0.00 31.35 2.43
5230 6307 6.297582 TCCCTCCGTTATTTTACACAGAAAA 58.702 36.000 0.00 0.00 33.04 2.29
5231 6308 5.867330 TCCCTCCGTTATTTTACACAGAAA 58.133 37.500 0.00 0.00 0.00 2.52
5232 6309 5.486735 TCCCTCCGTTATTTTACACAGAA 57.513 39.130 0.00 0.00 0.00 3.02
5233 6310 5.012354 ACTTCCCTCCGTTATTTTACACAGA 59.988 40.000 0.00 0.00 0.00 3.41
5234 6311 5.243207 ACTTCCCTCCGTTATTTTACACAG 58.757 41.667 0.00 0.00 0.00 3.66
5235 6312 5.221682 TGACTTCCCTCCGTTATTTTACACA 60.222 40.000 0.00 0.00 0.00 3.72
5236 6313 5.240121 TGACTTCCCTCCGTTATTTTACAC 58.760 41.667 0.00 0.00 0.00 2.90
5237 6314 5.246656 TCTGACTTCCCTCCGTTATTTTACA 59.753 40.000 0.00 0.00 0.00 2.41
5238 6315 5.727434 TCTGACTTCCCTCCGTTATTTTAC 58.273 41.667 0.00 0.00 0.00 2.01
5239 6316 5.718130 TCTCTGACTTCCCTCCGTTATTTTA 59.282 40.000 0.00 0.00 0.00 1.52
5240 6317 4.530946 TCTCTGACTTCCCTCCGTTATTTT 59.469 41.667 0.00 0.00 0.00 1.82
5241 6318 4.094476 TCTCTGACTTCCCTCCGTTATTT 58.906 43.478 0.00 0.00 0.00 1.40
5242 6319 3.702045 CTCTCTGACTTCCCTCCGTTATT 59.298 47.826 0.00 0.00 0.00 1.40
5243 6320 3.292460 CTCTCTGACTTCCCTCCGTTAT 58.708 50.000 0.00 0.00 0.00 1.89
5244 6321 2.041350 ACTCTCTGACTTCCCTCCGTTA 59.959 50.000 0.00 0.00 0.00 3.18
5245 6322 1.203075 ACTCTCTGACTTCCCTCCGTT 60.203 52.381 0.00 0.00 0.00 4.44
5246 6323 0.406361 ACTCTCTGACTTCCCTCCGT 59.594 55.000 0.00 0.00 0.00 4.69
5247 6324 2.421751 TACTCTCTGACTTCCCTCCG 57.578 55.000 0.00 0.00 0.00 4.63
5248 6325 4.090819 ACTTTACTCTCTGACTTCCCTCC 58.909 47.826 0.00 0.00 0.00 4.30
5249 6326 6.626402 GCTTACTTTACTCTCTGACTTCCCTC 60.626 46.154 0.00 0.00 0.00 4.30
5250 6327 5.186215 GCTTACTTTACTCTCTGACTTCCCT 59.814 44.000 0.00 0.00 0.00 4.20
5251 6328 5.047235 TGCTTACTTTACTCTCTGACTTCCC 60.047 44.000 0.00 0.00 0.00 3.97
5252 6329 5.865013 GTGCTTACTTTACTCTCTGACTTCC 59.135 44.000 0.00 0.00 0.00 3.46
5253 6330 6.584563 CAGTGCTTACTTTACTCTCTGACTTC 59.415 42.308 0.00 0.00 0.00 3.01
5254 6331 6.041069 ACAGTGCTTACTTTACTCTCTGACTT 59.959 38.462 0.00 0.00 0.00 3.01
5255 6332 5.536916 ACAGTGCTTACTTTACTCTCTGACT 59.463 40.000 0.00 0.00 0.00 3.41
5256 6333 5.774630 ACAGTGCTTACTTTACTCTCTGAC 58.225 41.667 0.00 0.00 0.00 3.51
5257 6334 6.940867 TCTACAGTGCTTACTTTACTCTCTGA 59.059 38.462 0.00 0.00 0.00 3.27
5258 6335 7.024768 GTCTACAGTGCTTACTTTACTCTCTG 58.975 42.308 0.00 0.00 0.00 3.35
5259 6336 6.715718 TGTCTACAGTGCTTACTTTACTCTCT 59.284 38.462 0.00 0.00 0.00 3.10
5260 6337 6.910995 TGTCTACAGTGCTTACTTTACTCTC 58.089 40.000 0.00 0.00 0.00 3.20
5261 6338 6.896021 TGTCTACAGTGCTTACTTTACTCT 57.104 37.500 0.00 0.00 0.00 3.24
5262 6339 7.941795 TTTGTCTACAGTGCTTACTTTACTC 57.058 36.000 0.00 0.00 0.00 2.59
5263 6340 8.904099 ATTTTGTCTACAGTGCTTACTTTACT 57.096 30.769 0.00 0.00 0.00 2.24
5266 6343 8.280497 CGTTATTTTGTCTACAGTGCTTACTTT 58.720 33.333 0.00 0.00 0.00 2.66
5267 6344 7.440255 ACGTTATTTTGTCTACAGTGCTTACTT 59.560 33.333 0.00 0.00 0.00 2.24
5268 6345 6.927381 ACGTTATTTTGTCTACAGTGCTTACT 59.073 34.615 0.00 0.00 0.00 2.24
5269 6346 7.113704 ACGTTATTTTGTCTACAGTGCTTAC 57.886 36.000 0.00 0.00 0.00 2.34
5270 6347 7.543172 CCTACGTTATTTTGTCTACAGTGCTTA 59.457 37.037 0.00 0.00 0.00 3.09
5271 6348 6.367969 CCTACGTTATTTTGTCTACAGTGCTT 59.632 38.462 0.00 0.00 0.00 3.91
5272 6349 5.867716 CCTACGTTATTTTGTCTACAGTGCT 59.132 40.000 0.00 0.00 0.00 4.40
5273 6350 5.445540 GCCTACGTTATTTTGTCTACAGTGC 60.446 44.000 0.00 0.00 0.00 4.40
5274 6351 5.220154 CGCCTACGTTATTTTGTCTACAGTG 60.220 44.000 0.00 0.00 33.53 3.66
5275 6352 4.860907 CGCCTACGTTATTTTGTCTACAGT 59.139 41.667 0.00 0.00 33.53 3.55
5276 6353 5.097529 TCGCCTACGTTATTTTGTCTACAG 58.902 41.667 0.00 0.00 41.18 2.74
5277 6354 5.058149 TCGCCTACGTTATTTTGTCTACA 57.942 39.130 0.00 0.00 41.18 2.74
5278 6355 6.579491 AATCGCCTACGTTATTTTGTCTAC 57.421 37.500 0.00 0.00 41.18 2.59
5279 6356 7.433131 CAGTAATCGCCTACGTTATTTTGTCTA 59.567 37.037 0.00 0.00 41.18 2.59
5280 6357 6.255020 CAGTAATCGCCTACGTTATTTTGTCT 59.745 38.462 0.00 0.00 41.18 3.41
5281 6358 6.035327 ACAGTAATCGCCTACGTTATTTTGTC 59.965 38.462 0.00 0.00 41.18 3.18
5282 6359 5.870978 ACAGTAATCGCCTACGTTATTTTGT 59.129 36.000 0.00 0.00 41.18 2.83
5283 6360 6.340537 ACAGTAATCGCCTACGTTATTTTG 57.659 37.500 0.00 0.00 41.18 2.44
5284 6361 6.199719 GCTACAGTAATCGCCTACGTTATTTT 59.800 38.462 0.00 0.00 41.18 1.82
5285 6362 5.689068 GCTACAGTAATCGCCTACGTTATTT 59.311 40.000 0.00 0.00 41.18 1.40
5286 6363 5.218139 GCTACAGTAATCGCCTACGTTATT 58.782 41.667 0.00 0.00 41.18 1.40
5287 6364 4.612259 CGCTACAGTAATCGCCTACGTTAT 60.612 45.833 0.00 0.00 41.18 1.89
5288 6365 3.303329 CGCTACAGTAATCGCCTACGTTA 60.303 47.826 0.00 0.00 41.18 3.18
5289 6366 2.540361 CGCTACAGTAATCGCCTACGTT 60.540 50.000 0.00 0.00 41.18 3.99
5290 6367 1.003116 CGCTACAGTAATCGCCTACGT 60.003 52.381 0.00 0.00 41.18 3.57
5291 6368 1.262417 TCGCTACAGTAATCGCCTACG 59.738 52.381 0.00 0.00 42.01 3.51
5292 6369 3.344904 TTCGCTACAGTAATCGCCTAC 57.655 47.619 0.00 0.00 0.00 3.18
5293 6370 4.579454 AATTCGCTACAGTAATCGCCTA 57.421 40.909 0.00 0.00 0.00 3.93
5294 6371 3.454371 AATTCGCTACAGTAATCGCCT 57.546 42.857 0.00 0.00 0.00 5.52
5295 6372 4.148348 CAGTAATTCGCTACAGTAATCGCC 59.852 45.833 0.00 0.00 0.00 5.54
5296 6373 4.375105 GCAGTAATTCGCTACAGTAATCGC 60.375 45.833 0.00 0.00 0.00 4.58
5297 6374 4.738252 TGCAGTAATTCGCTACAGTAATCG 59.262 41.667 0.00 0.00 0.00 3.34
5298 6375 5.977725 TCTGCAGTAATTCGCTACAGTAATC 59.022 40.000 14.67 0.00 31.23 1.75
5299 6376 5.902681 TCTGCAGTAATTCGCTACAGTAAT 58.097 37.500 14.67 0.00 31.23 1.89
5300 6377 5.319140 TCTGCAGTAATTCGCTACAGTAA 57.681 39.130 14.67 0.00 31.23 2.24
5301 6378 4.976224 TCTGCAGTAATTCGCTACAGTA 57.024 40.909 14.67 0.00 31.23 2.74
5302 6379 3.868757 TCTGCAGTAATTCGCTACAGT 57.131 42.857 14.67 0.00 31.23 3.55
5303 6380 5.107683 GCTTATCTGCAGTAATTCGCTACAG 60.108 44.000 14.67 4.60 0.00 2.74
5304 6381 4.745125 GCTTATCTGCAGTAATTCGCTACA 59.255 41.667 14.67 0.00 0.00 2.74
5305 6382 4.745125 TGCTTATCTGCAGTAATTCGCTAC 59.255 41.667 14.67 0.00 38.12 3.58
5306 6383 4.944048 TGCTTATCTGCAGTAATTCGCTA 58.056 39.130 14.67 0.00 38.12 4.26
5307 6384 3.797039 TGCTTATCTGCAGTAATTCGCT 58.203 40.909 14.67 0.00 38.12 4.93
5308 6385 4.024556 ACATGCTTATCTGCAGTAATTCGC 60.025 41.667 14.67 10.51 46.71 4.70
5309 6386 5.007039 ACACATGCTTATCTGCAGTAATTCG 59.993 40.000 14.67 0.12 46.71 3.34
5310 6387 6.369059 ACACATGCTTATCTGCAGTAATTC 57.631 37.500 14.67 2.52 46.71 2.17
5311 6388 7.716560 TCATACACATGCTTATCTGCAGTAATT 59.283 33.333 14.67 0.09 46.71 1.40
5312 6389 7.219322 TCATACACATGCTTATCTGCAGTAAT 58.781 34.615 14.67 3.11 46.71 1.89
5313 6390 6.581712 TCATACACATGCTTATCTGCAGTAA 58.418 36.000 14.67 10.56 46.71 2.24
5314 6391 6.160576 TCATACACATGCTTATCTGCAGTA 57.839 37.500 14.67 2.70 46.71 2.74
5315 6392 5.027293 TCATACACATGCTTATCTGCAGT 57.973 39.130 14.67 3.75 46.71 4.40
5316 6393 5.996669 TTCATACACATGCTTATCTGCAG 57.003 39.130 7.63 7.63 46.71 4.41
5317 6394 8.118266 AGTGATTCATACACATGCTTATCTGCA 61.118 37.037 0.00 0.00 40.17 4.41
5318 6395 6.204301 AGTGATTCATACACATGCTTATCTGC 59.796 38.462 0.00 0.00 40.25 4.26
5319 6396 7.359014 CGAGTGATTCATACACATGCTTATCTG 60.359 40.741 0.00 0.00 40.25 2.90
5320 6397 6.644181 CGAGTGATTCATACACATGCTTATCT 59.356 38.462 0.00 0.00 40.25 1.98
5321 6398 6.422100 ACGAGTGATTCATACACATGCTTATC 59.578 38.462 0.00 0.00 40.25 1.75
5322 6399 6.201615 CACGAGTGATTCATACACATGCTTAT 59.798 38.462 0.00 0.00 40.25 1.73
5323 6400 5.519927 CACGAGTGATTCATACACATGCTTA 59.480 40.000 0.00 0.00 40.25 3.09
5324 6401 4.330894 CACGAGTGATTCATACACATGCTT 59.669 41.667 0.00 0.00 40.25 3.91
5325 6402 3.867493 CACGAGTGATTCATACACATGCT 59.133 43.478 0.00 0.00 40.25 3.79
5326 6403 3.544834 GCACGAGTGATTCATACACATGC 60.545 47.826 7.50 0.00 40.25 4.06
5327 6404 3.302028 CGCACGAGTGATTCATACACATG 60.302 47.826 7.50 0.00 40.25 3.21
5328 6405 2.860136 CGCACGAGTGATTCATACACAT 59.140 45.455 7.50 0.00 40.25 3.21
5329 6406 2.258755 CGCACGAGTGATTCATACACA 58.741 47.619 7.50 0.00 40.25 3.72
5330 6407 2.028045 CACGCACGAGTGATTCATACAC 59.972 50.000 7.50 0.00 44.43 2.90
5331 6408 2.258755 CACGCACGAGTGATTCATACA 58.741 47.619 7.50 0.00 44.43 2.29
5332 6409 1.005975 GCACGCACGAGTGATTCATAC 60.006 52.381 7.50 0.00 44.43 2.39
5333 6410 1.277326 GCACGCACGAGTGATTCATA 58.723 50.000 7.50 0.00 44.43 2.15
5334 6411 2.081526 GCACGCACGAGTGATTCAT 58.918 52.632 7.50 0.00 44.43 2.57
5335 6412 3.549467 GCACGCACGAGTGATTCA 58.451 55.556 7.50 0.00 44.43 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.