Multiple sequence alignment - TraesCS3A01G180700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G180700 | chr3A | 100.000 | 3289 | 0 | 0 | 1 | 3289 | 208454106 | 208457394 | 0.000000e+00 | 6074.0 |
1 | TraesCS3A01G180700 | chr3D | 88.112 | 2490 | 175 | 61 | 296 | 2719 | 170929974 | 170932408 | 0.000000e+00 | 2846.0 |
2 | TraesCS3A01G180700 | chr3D | 89.362 | 141 | 7 | 5 | 3150 | 3286 | 170932840 | 170932976 | 1.570000e-38 | 171.0 |
3 | TraesCS3A01G180700 | chr3D | 83.146 | 89 | 7 | 3 | 1116 | 1204 | 212868911 | 212868991 | 1.270000e-09 | 75.0 |
4 | TraesCS3A01G180700 | chr3B | 88.491 | 1173 | 61 | 30 | 296 | 1427 | 246503020 | 246504159 | 0.000000e+00 | 1351.0 |
5 | TraesCS3A01G180700 | chr3B | 88.612 | 922 | 77 | 11 | 1435 | 2342 | 246504194 | 246505101 | 0.000000e+00 | 1096.0 |
6 | TraesCS3A01G180700 | chr3B | 88.112 | 143 | 10 | 4 | 3150 | 3289 | 246505761 | 246505899 | 2.630000e-36 | 163.0 |
7 | TraesCS3A01G180700 | chr3B | 97.436 | 39 | 1 | 0 | 1166 | 1204 | 259702050 | 259702012 | 2.120000e-07 | 67.6 |
8 | TraesCS3A01G180700 | chr4B | 84.656 | 756 | 96 | 12 | 2032 | 2778 | 529353151 | 529352407 | 0.000000e+00 | 736.0 |
9 | TraesCS3A01G180700 | chr4B | 97.159 | 176 | 3 | 2 | 2985 | 3158 | 143898149 | 143897974 | 2.480000e-76 | 296.0 |
10 | TraesCS3A01G180700 | chr5A | 84.245 | 768 | 102 | 10 | 2020 | 2778 | 521195021 | 521195778 | 0.000000e+00 | 730.0 |
11 | TraesCS3A01G180700 | chr5A | 84.392 | 756 | 99 | 13 | 2032 | 2778 | 649236270 | 649235525 | 0.000000e+00 | 725.0 |
12 | TraesCS3A01G180700 | chr5A | 96.571 | 175 | 6 | 0 | 2978 | 3152 | 659145352 | 659145526 | 1.150000e-74 | 291.0 |
13 | TraesCS3A01G180700 | chr4A | 84.314 | 765 | 97 | 15 | 2025 | 2778 | 477951557 | 477952309 | 0.000000e+00 | 726.0 |
14 | TraesCS3A01G180700 | chr4A | 100.000 | 34 | 0 | 0 | 1171 | 1204 | 238767469 | 238767436 | 2.740000e-06 | 63.9 |
15 | TraesCS3A01G180700 | chr4D | 84.148 | 757 | 100 | 12 | 2032 | 2778 | 300794989 | 300795735 | 0.000000e+00 | 715.0 |
16 | TraesCS3A01G180700 | chr1B | 84.148 | 757 | 100 | 14 | 2032 | 2778 | 405392416 | 405391670 | 0.000000e+00 | 715.0 |
17 | TraesCS3A01G180700 | chr1B | 95.000 | 40 | 2 | 0 | 1166 | 1205 | 143857983 | 143858022 | 2.740000e-06 | 63.9 |
18 | TraesCS3A01G180700 | chr2A | 84.127 | 756 | 101 | 11 | 2032 | 2778 | 88723143 | 88723888 | 0.000000e+00 | 713.0 |
19 | TraesCS3A01G180700 | chr2A | 97.059 | 170 | 5 | 0 | 2981 | 3150 | 709834354 | 709834523 | 1.490000e-73 | 287.0 |
20 | TraesCS3A01G180700 | chr6A | 83.995 | 756 | 102 | 9 | 2032 | 2778 | 419484973 | 419485718 | 0.000000e+00 | 708.0 |
21 | TraesCS3A01G180700 | chr6A | 97.674 | 172 | 4 | 0 | 2978 | 3149 | 1830024 | 1829853 | 2.480000e-76 | 296.0 |
22 | TraesCS3A01G180700 | chr6A | 97.110 | 173 | 5 | 0 | 2978 | 3150 | 384143937 | 384144109 | 3.210000e-75 | 292.0 |
23 | TraesCS3A01G180700 | chr6A | 97.368 | 38 | 1 | 0 | 1167 | 1204 | 155935681 | 155935718 | 7.620000e-07 | 65.8 |
24 | TraesCS3A01G180700 | chr6B | 83.837 | 761 | 104 | 13 | 2022 | 2772 | 57750070 | 57749319 | 0.000000e+00 | 706.0 |
25 | TraesCS3A01G180700 | chr6B | 100.000 | 39 | 0 | 0 | 1166 | 1204 | 471136077 | 471136115 | 4.550000e-09 | 73.1 |
26 | TraesCS3A01G180700 | chr7A | 97.175 | 177 | 3 | 2 | 2983 | 3159 | 47626467 | 47626293 | 6.900000e-77 | 298.0 |
27 | TraesCS3A01G180700 | chr7A | 97.143 | 175 | 4 | 1 | 2979 | 3152 | 630046158 | 630046332 | 8.930000e-76 | 294.0 |
28 | TraesCS3A01G180700 | chr7A | 97.110 | 173 | 5 | 0 | 2978 | 3150 | 521961352 | 521961180 | 3.210000e-75 | 292.0 |
29 | TraesCS3A01G180700 | chr7A | 97.436 | 39 | 1 | 0 | 1166 | 1204 | 238551311 | 238551273 | 2.120000e-07 | 67.6 |
30 | TraesCS3A01G180700 | chr7A | 97.368 | 38 | 1 | 0 | 1167 | 1204 | 327312285 | 327312322 | 7.620000e-07 | 65.8 |
31 | TraesCS3A01G180700 | chr5B | 94.241 | 191 | 9 | 2 | 2979 | 3167 | 706829569 | 706829379 | 1.150000e-74 | 291.0 |
32 | TraesCS3A01G180700 | chr2D | 87.013 | 154 | 16 | 3 | 1 | 151 | 59833523 | 59833371 | 1.570000e-38 | 171.0 |
33 | TraesCS3A01G180700 | chr2D | 84.810 | 79 | 4 | 3 | 1125 | 1203 | 291911397 | 291911467 | 4.550000e-09 | 73.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G180700 | chr3A | 208454106 | 208457394 | 3288 | False | 6074.0 | 6074 | 100.000 | 1 | 3289 | 1 | chr3A.!!$F1 | 3288 |
1 | TraesCS3A01G180700 | chr3D | 170929974 | 170932976 | 3002 | False | 1508.5 | 2846 | 88.737 | 296 | 3286 | 2 | chr3D.!!$F2 | 2990 |
2 | TraesCS3A01G180700 | chr3B | 246503020 | 246505899 | 2879 | False | 870.0 | 1351 | 88.405 | 296 | 3289 | 3 | chr3B.!!$F1 | 2993 |
3 | TraesCS3A01G180700 | chr4B | 529352407 | 529353151 | 744 | True | 736.0 | 736 | 84.656 | 2032 | 2778 | 1 | chr4B.!!$R2 | 746 |
4 | TraesCS3A01G180700 | chr5A | 521195021 | 521195778 | 757 | False | 730.0 | 730 | 84.245 | 2020 | 2778 | 1 | chr5A.!!$F1 | 758 |
5 | TraesCS3A01G180700 | chr5A | 649235525 | 649236270 | 745 | True | 725.0 | 725 | 84.392 | 2032 | 2778 | 1 | chr5A.!!$R1 | 746 |
6 | TraesCS3A01G180700 | chr4A | 477951557 | 477952309 | 752 | False | 726.0 | 726 | 84.314 | 2025 | 2778 | 1 | chr4A.!!$F1 | 753 |
7 | TraesCS3A01G180700 | chr4D | 300794989 | 300795735 | 746 | False | 715.0 | 715 | 84.148 | 2032 | 2778 | 1 | chr4D.!!$F1 | 746 |
8 | TraesCS3A01G180700 | chr1B | 405391670 | 405392416 | 746 | True | 715.0 | 715 | 84.148 | 2032 | 2778 | 1 | chr1B.!!$R1 | 746 |
9 | TraesCS3A01G180700 | chr2A | 88723143 | 88723888 | 745 | False | 713.0 | 713 | 84.127 | 2032 | 2778 | 1 | chr2A.!!$F1 | 746 |
10 | TraesCS3A01G180700 | chr6A | 419484973 | 419485718 | 745 | False | 708.0 | 708 | 83.995 | 2032 | 2778 | 1 | chr6A.!!$F3 | 746 |
11 | TraesCS3A01G180700 | chr6B | 57749319 | 57750070 | 751 | True | 706.0 | 706 | 83.837 | 2022 | 2772 | 1 | chr6B.!!$R1 | 750 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
160 | 161 | 0.380378 | GCGGCGATGCTAAATCCAAA | 59.62 | 50.0 | 12.98 | 0.0 | 0.0 | 3.28 | F |
1003 | 1046 | 0.109597 | GCACAAGTCAAATCGCCCAG | 60.11 | 55.0 | 0.00 | 0.0 | 0.0 | 4.45 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1081 | 1124 | 0.766288 | CAGGAATCCCCTCTCTCCCC | 60.766 | 65.0 | 0.0 | 0.0 | 45.60 | 4.81 | R |
2614 | 2794 | 0.033504 | GAGCGTCTGGTGTTCTCCAA | 59.966 | 55.0 | 0.0 | 0.0 | 37.01 | 3.53 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 4.629523 | AGAAAACCCCGGCGCGAA | 62.630 | 61.111 | 12.10 | 0.00 | 0.00 | 4.70 |
26 | 27 | 4.097863 | GAAAACCCCGGCGCGAAG | 62.098 | 66.667 | 12.10 | 1.29 | 0.00 | 3.79 |
38 | 39 | 3.400007 | GCGAAGGAGATGGCGAAC | 58.600 | 61.111 | 0.00 | 0.00 | 0.00 | 3.95 |
39 | 40 | 2.517450 | GCGAAGGAGATGGCGAACG | 61.517 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
40 | 41 | 1.138883 | CGAAGGAGATGGCGAACGA | 59.861 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
41 | 42 | 0.867753 | CGAAGGAGATGGCGAACGAG | 60.868 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
42 | 43 | 0.528684 | GAAGGAGATGGCGAACGAGG | 60.529 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
43 | 44 | 0.970937 | AAGGAGATGGCGAACGAGGA | 60.971 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
44 | 45 | 1.066587 | GGAGATGGCGAACGAGGAG | 59.933 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
45 | 46 | 1.066587 | GAGATGGCGAACGAGGAGG | 59.933 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
46 | 47 | 2.107141 | GATGGCGAACGAGGAGGG | 59.893 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
47 | 48 | 3.447025 | GATGGCGAACGAGGAGGGG | 62.447 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
50 | 51 | 3.839432 | GCGAACGAGGAGGGGGAG | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
51 | 52 | 3.839432 | CGAACGAGGAGGGGGAGC | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
52 | 53 | 3.471806 | GAACGAGGAGGGGGAGCC | 61.472 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
79 | 80 | 3.186047 | GACGGGCGTCGACATTGG | 61.186 | 66.667 | 17.16 | 4.27 | 42.43 | 3.16 |
85 | 86 | 4.752879 | CGTCGACATTGGCCCGGT | 62.753 | 66.667 | 17.16 | 0.00 | 0.00 | 5.28 |
86 | 87 | 3.124921 | GTCGACATTGGCCCGGTG | 61.125 | 66.667 | 11.55 | 0.00 | 0.00 | 4.94 |
89 | 90 | 3.134127 | GACATTGGCCCGGTGCTC | 61.134 | 66.667 | 13.58 | 5.87 | 40.92 | 4.26 |
90 | 91 | 4.740822 | ACATTGGCCCGGTGCTCC | 62.741 | 66.667 | 13.58 | 0.00 | 40.92 | 4.70 |
91 | 92 | 4.431131 | CATTGGCCCGGTGCTCCT | 62.431 | 66.667 | 13.58 | 0.00 | 40.92 | 3.69 |
92 | 93 | 4.431131 | ATTGGCCCGGTGCTCCTG | 62.431 | 66.667 | 13.58 | 0.00 | 40.92 | 3.86 |
119 | 120 | 3.213402 | GCGGTCGAGGAGGAGGAG | 61.213 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
120 | 121 | 2.517402 | CGGTCGAGGAGGAGGAGG | 60.517 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
121 | 122 | 2.684735 | GGTCGAGGAGGAGGAGGT | 59.315 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
122 | 123 | 1.454295 | GGTCGAGGAGGAGGAGGTC | 60.454 | 68.421 | 0.00 | 0.00 | 0.00 | 3.85 |
123 | 124 | 1.820481 | GTCGAGGAGGAGGAGGTCG | 60.820 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
124 | 125 | 3.213402 | CGAGGAGGAGGAGGTCGC | 61.213 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
125 | 126 | 2.835895 | GAGGAGGAGGAGGTCGCC | 60.836 | 72.222 | 0.00 | 0.00 | 35.38 | 5.54 |
126 | 127 | 4.824515 | AGGAGGAGGAGGTCGCCG | 62.825 | 72.222 | 0.00 | 0.00 | 40.51 | 6.46 |
128 | 129 | 3.519930 | GAGGAGGAGGTCGCCGTC | 61.520 | 72.222 | 0.00 | 0.00 | 40.51 | 4.79 |
131 | 132 | 4.176851 | GAGGAGGTCGCCGTCGTC | 62.177 | 72.222 | 0.00 | 0.00 | 34.47 | 4.20 |
134 | 135 | 3.823330 | GAGGTCGCCGTCGTCCAT | 61.823 | 66.667 | 4.76 | 0.00 | 44.48 | 3.41 |
135 | 136 | 4.129737 | AGGTCGCCGTCGTCCATG | 62.130 | 66.667 | 4.76 | 0.00 | 44.48 | 3.66 |
141 | 142 | 4.838152 | CCGTCGTCCATGGGCCTG | 62.838 | 72.222 | 11.65 | 0.00 | 0.00 | 4.85 |
154 | 155 | 3.202001 | GCCTGCGGCGATGCTAAA | 61.202 | 61.111 | 12.98 | 0.00 | 39.62 | 1.85 |
155 | 156 | 2.546494 | GCCTGCGGCGATGCTAAAT | 61.546 | 57.895 | 12.98 | 0.00 | 39.62 | 1.40 |
156 | 157 | 1.571460 | CCTGCGGCGATGCTAAATC | 59.429 | 57.895 | 12.98 | 0.00 | 35.36 | 2.17 |
157 | 158 | 1.571460 | CTGCGGCGATGCTAAATCC | 59.429 | 57.895 | 12.98 | 0.00 | 35.36 | 3.01 |
158 | 159 | 1.153269 | TGCGGCGATGCTAAATCCA | 60.153 | 52.632 | 12.98 | 0.00 | 35.36 | 3.41 |
159 | 160 | 0.746204 | TGCGGCGATGCTAAATCCAA | 60.746 | 50.000 | 12.98 | 0.00 | 35.36 | 3.53 |
160 | 161 | 0.380378 | GCGGCGATGCTAAATCCAAA | 59.620 | 50.000 | 12.98 | 0.00 | 0.00 | 3.28 |
161 | 162 | 1.202245 | GCGGCGATGCTAAATCCAAAA | 60.202 | 47.619 | 12.98 | 0.00 | 0.00 | 2.44 |
162 | 163 | 2.733858 | GCGGCGATGCTAAATCCAAAAA | 60.734 | 45.455 | 12.98 | 0.00 | 0.00 | 1.94 |
226 | 227 | 6.175712 | GACAAAGTTTGGCAAATGTTTTCA | 57.824 | 33.333 | 16.85 | 0.00 | 38.99 | 2.69 |
227 | 228 | 6.566197 | ACAAAGTTTGGCAAATGTTTTCAA | 57.434 | 29.167 | 16.74 | 0.00 | 34.12 | 2.69 |
228 | 229 | 7.155655 | ACAAAGTTTGGCAAATGTTTTCAAT | 57.844 | 28.000 | 16.74 | 3.67 | 34.12 | 2.57 |
229 | 230 | 7.028361 | ACAAAGTTTGGCAAATGTTTTCAATG | 58.972 | 30.769 | 16.74 | 9.70 | 34.12 | 2.82 |
230 | 231 | 5.172460 | AGTTTGGCAAATGTTTTCAATGC | 57.828 | 34.783 | 16.74 | 0.00 | 42.22 | 3.56 |
231 | 232 | 4.883006 | AGTTTGGCAAATGTTTTCAATGCT | 59.117 | 33.333 | 16.74 | 0.76 | 42.42 | 3.79 |
232 | 233 | 5.357596 | AGTTTGGCAAATGTTTTCAATGCTT | 59.642 | 32.000 | 16.74 | 0.00 | 42.42 | 3.91 |
233 | 234 | 4.815040 | TGGCAAATGTTTTCAATGCTTG | 57.185 | 36.364 | 0.00 | 0.00 | 42.42 | 4.01 |
234 | 235 | 3.003482 | TGGCAAATGTTTTCAATGCTTGC | 59.997 | 39.130 | 0.00 | 0.00 | 42.42 | 4.01 |
235 | 236 | 3.003482 | GGCAAATGTTTTCAATGCTTGCA | 59.997 | 39.130 | 0.00 | 0.00 | 42.42 | 4.08 |
236 | 237 | 3.969981 | GCAAATGTTTTCAATGCTTGCAC | 59.030 | 39.130 | 0.00 | 0.00 | 40.84 | 4.57 |
237 | 238 | 4.496010 | GCAAATGTTTTCAATGCTTGCACA | 60.496 | 37.500 | 0.00 | 0.00 | 40.84 | 4.57 |
238 | 239 | 5.201910 | CAAATGTTTTCAATGCTTGCACAG | 58.798 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
239 | 240 | 3.523606 | TGTTTTCAATGCTTGCACAGT | 57.476 | 38.095 | 0.00 | 0.00 | 0.00 | 3.55 |
240 | 241 | 3.859443 | TGTTTTCAATGCTTGCACAGTT | 58.141 | 36.364 | 0.00 | 0.00 | 0.00 | 3.16 |
241 | 242 | 4.252073 | TGTTTTCAATGCTTGCACAGTTT | 58.748 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
242 | 243 | 4.329528 | TGTTTTCAATGCTTGCACAGTTTC | 59.670 | 37.500 | 0.00 | 0.00 | 0.00 | 2.78 |
243 | 244 | 3.797451 | TTCAATGCTTGCACAGTTTCA | 57.203 | 38.095 | 0.00 | 0.00 | 0.00 | 2.69 |
244 | 245 | 4.325028 | TTCAATGCTTGCACAGTTTCAT | 57.675 | 36.364 | 0.00 | 0.00 | 0.00 | 2.57 |
245 | 246 | 3.904571 | TCAATGCTTGCACAGTTTCATC | 58.095 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
246 | 247 | 3.570975 | TCAATGCTTGCACAGTTTCATCT | 59.429 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
247 | 248 | 4.038282 | TCAATGCTTGCACAGTTTCATCTT | 59.962 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
248 | 249 | 3.358707 | TGCTTGCACAGTTTCATCTTG | 57.641 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
249 | 250 | 2.950975 | TGCTTGCACAGTTTCATCTTGA | 59.049 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
250 | 251 | 3.380954 | TGCTTGCACAGTTTCATCTTGAA | 59.619 | 39.130 | 0.00 | 0.00 | 34.03 | 2.69 |
251 | 252 | 4.142204 | TGCTTGCACAGTTTCATCTTGAAA | 60.142 | 37.500 | 0.00 | 0.00 | 43.37 | 2.69 |
252 | 253 | 4.986659 | GCTTGCACAGTTTCATCTTGAAAT | 59.013 | 37.500 | 6.01 | 0.00 | 46.55 | 2.17 |
253 | 254 | 5.107607 | GCTTGCACAGTTTCATCTTGAAATG | 60.108 | 40.000 | 6.01 | 7.89 | 46.55 | 2.32 |
254 | 255 | 5.771153 | TGCACAGTTTCATCTTGAAATGA | 57.229 | 34.783 | 6.01 | 0.00 | 46.55 | 2.57 |
255 | 256 | 5.522456 | TGCACAGTTTCATCTTGAAATGAC | 58.478 | 37.500 | 6.01 | 0.00 | 46.55 | 3.06 |
256 | 257 | 5.067544 | TGCACAGTTTCATCTTGAAATGACA | 59.932 | 36.000 | 6.01 | 7.09 | 46.55 | 3.58 |
257 | 258 | 6.154445 | GCACAGTTTCATCTTGAAATGACAT | 58.846 | 36.000 | 6.01 | 0.00 | 46.55 | 3.06 |
258 | 259 | 6.643770 | GCACAGTTTCATCTTGAAATGACATT | 59.356 | 34.615 | 6.01 | 0.00 | 46.55 | 2.71 |
259 | 260 | 7.170320 | GCACAGTTTCATCTTGAAATGACATTT | 59.830 | 33.333 | 13.24 | 13.24 | 46.55 | 2.32 |
260 | 261 | 8.484799 | CACAGTTTCATCTTGAAATGACATTTG | 58.515 | 33.333 | 18.00 | 4.44 | 46.55 | 2.32 |
261 | 262 | 8.199449 | ACAGTTTCATCTTGAAATGACATTTGT | 58.801 | 29.630 | 18.00 | 3.14 | 46.55 | 2.83 |
262 | 263 | 8.484799 | CAGTTTCATCTTGAAATGACATTTGTG | 58.515 | 33.333 | 18.00 | 7.84 | 46.55 | 3.33 |
263 | 264 | 8.415553 | AGTTTCATCTTGAAATGACATTTGTGA | 58.584 | 29.630 | 18.00 | 12.33 | 46.55 | 3.58 |
264 | 265 | 9.033481 | GTTTCATCTTGAAATGACATTTGTGAA | 57.967 | 29.630 | 18.00 | 14.78 | 46.55 | 3.18 |
265 | 266 | 9.597170 | TTTCATCTTGAAATGACATTTGTGAAA | 57.403 | 25.926 | 18.00 | 18.47 | 41.02 | 2.69 |
266 | 267 | 8.806177 | TCATCTTGAAATGACATTTGTGAAAG | 57.194 | 30.769 | 18.00 | 14.26 | 30.76 | 2.62 |
267 | 268 | 8.415553 | TCATCTTGAAATGACATTTGTGAAAGT | 58.584 | 29.630 | 18.00 | 5.37 | 30.76 | 2.66 |
268 | 269 | 7.990541 | TCTTGAAATGACATTTGTGAAAGTG | 57.009 | 32.000 | 18.00 | 0.90 | 31.47 | 3.16 |
269 | 270 | 6.979817 | TCTTGAAATGACATTTGTGAAAGTGG | 59.020 | 34.615 | 18.00 | 0.00 | 31.47 | 4.00 |
270 | 271 | 6.219417 | TGAAATGACATTTGTGAAAGTGGT | 57.781 | 33.333 | 18.00 | 0.00 | 31.47 | 4.16 |
271 | 272 | 6.041511 | TGAAATGACATTTGTGAAAGTGGTG | 58.958 | 36.000 | 18.00 | 0.00 | 31.47 | 4.17 |
272 | 273 | 4.589216 | ATGACATTTGTGAAAGTGGTGG | 57.411 | 40.909 | 0.00 | 0.00 | 0.00 | 4.61 |
273 | 274 | 2.100584 | TGACATTTGTGAAAGTGGTGGC | 59.899 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
274 | 275 | 2.100584 | GACATTTGTGAAAGTGGTGGCA | 59.899 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
275 | 276 | 2.499289 | ACATTTGTGAAAGTGGTGGCAA | 59.501 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
276 | 277 | 3.055530 | ACATTTGTGAAAGTGGTGGCAAA | 60.056 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
277 | 278 | 3.685139 | TTTGTGAAAGTGGTGGCAAAA | 57.315 | 38.095 | 0.00 | 0.00 | 0.00 | 2.44 |
278 | 279 | 3.685139 | TTGTGAAAGTGGTGGCAAAAA | 57.315 | 38.095 | 0.00 | 0.00 | 0.00 | 1.94 |
351 | 352 | 0.975556 | TGGAGCTCAGGTAATCCGCA | 60.976 | 55.000 | 17.19 | 0.00 | 39.05 | 5.69 |
363 | 364 | 1.602311 | AATCCGCATCCTGATTCTGC | 58.398 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
372 | 373 | 4.534168 | CATCCTGATTCTGCGCATTTTAG | 58.466 | 43.478 | 12.24 | 6.19 | 0.00 | 1.85 |
385 | 386 | 3.243877 | CGCATTTTAGTCGATGAGAGGTG | 59.756 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
389 | 390 | 4.920640 | TTTAGTCGATGAGAGGTGGATC | 57.079 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
429 | 430 | 2.125106 | CACCGACCAGCTAAGCCC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
431 | 432 | 1.995626 | ACCGACCAGCTAAGCCCAT | 60.996 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
488 | 492 | 7.069331 | TGACAAATAATTGGGTTTCTCTGTGTT | 59.931 | 33.333 | 0.00 | 0.00 | 41.01 | 3.32 |
533 | 538 | 6.199531 | TGTGGCGCGATTTATTTTACTACTAG | 59.800 | 38.462 | 12.10 | 0.00 | 0.00 | 2.57 |
534 | 539 | 6.199719 | GTGGCGCGATTTATTTTACTACTAGT | 59.800 | 38.462 | 12.10 | 0.00 | 0.00 | 2.57 |
535 | 540 | 7.379529 | GTGGCGCGATTTATTTTACTACTAGTA | 59.620 | 37.037 | 12.10 | 1.89 | 0.00 | 1.82 |
577 | 582 | 1.134371 | AGATCCTAAGCGGGAGTTTGC | 60.134 | 52.381 | 0.00 | 0.00 | 38.92 | 3.68 |
616 | 621 | 5.969435 | GCTTAAATAATAAGCGGTTGGTGAC | 59.031 | 40.000 | 10.73 | 0.00 | 40.19 | 3.67 |
763 | 776 | 3.308705 | GGTTGACCGGACGGACCT | 61.309 | 66.667 | 18.80 | 0.00 | 38.96 | 3.85 |
768 | 781 | 2.679287 | ACCGGACGGACCTCTTCC | 60.679 | 66.667 | 18.80 | 0.00 | 41.75 | 3.46 |
769 | 782 | 2.362632 | CCGGACGGACCTCTTCCT | 60.363 | 66.667 | 4.40 | 0.00 | 43.25 | 3.36 |
805 | 826 | 4.864247 | GTGTATCCACATCAAACATTTGCC | 59.136 | 41.667 | 0.00 | 0.00 | 41.44 | 4.52 |
807 | 828 | 5.948758 | TGTATCCACATCAAACATTTGCCTA | 59.051 | 36.000 | 0.00 | 0.00 | 38.05 | 3.93 |
808 | 829 | 4.782019 | TCCACATCAAACATTTGCCTAC | 57.218 | 40.909 | 0.00 | 0.00 | 38.05 | 3.18 |
816 | 848 | 4.800993 | TCAAACATTTGCCTACGTTTGTTG | 59.199 | 37.500 | 12.12 | 0.00 | 45.29 | 3.33 |
822 | 854 | 3.015516 | CCTACGTTTGTTGGCACCT | 57.984 | 52.632 | 0.00 | 0.00 | 34.25 | 4.00 |
823 | 855 | 2.172851 | CCTACGTTTGTTGGCACCTA | 57.827 | 50.000 | 0.00 | 0.00 | 34.25 | 3.08 |
824 | 856 | 1.802365 | CCTACGTTTGTTGGCACCTAC | 59.198 | 52.381 | 0.00 | 0.00 | 34.25 | 3.18 |
825 | 857 | 2.549349 | CCTACGTTTGTTGGCACCTACT | 60.549 | 50.000 | 0.00 | 0.00 | 34.25 | 2.57 |
930 | 971 | 3.917760 | CGGATCCCCCACTCGCTC | 61.918 | 72.222 | 6.06 | 0.00 | 34.14 | 5.03 |
973 | 1016 | 2.426024 | AGCCGACGCTCTCTGTATAAAA | 59.574 | 45.455 | 0.00 | 0.00 | 43.95 | 1.52 |
1003 | 1046 | 0.109597 | GCACAAGTCAAATCGCCCAG | 60.110 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1154 | 1226 | 2.253452 | GGCAGCAGCAACGACAAG | 59.747 | 61.111 | 2.65 | 0.00 | 44.61 | 3.16 |
1156 | 1228 | 2.546494 | GCAGCAGCAACGACAAGGT | 61.546 | 57.895 | 0.00 | 0.00 | 41.58 | 3.50 |
1296 | 1368 | 1.529865 | GGTGCGACTGTTTGTCTTACC | 59.470 | 52.381 | 0.00 | 0.00 | 43.25 | 2.85 |
1427 | 1499 | 3.435026 | CCATCCCCACCGATTGATTAGTT | 60.435 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
1429 | 1501 | 3.616219 | TCCCCACCGATTGATTAGTTTG | 58.384 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
1430 | 1502 | 3.009695 | TCCCCACCGATTGATTAGTTTGT | 59.990 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
1431 | 1503 | 3.761752 | CCCCACCGATTGATTAGTTTGTT | 59.238 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
1434 | 1506 | 5.065988 | CCCACCGATTGATTAGTTTGTTAGG | 59.934 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1435 | 1507 | 5.646360 | CCACCGATTGATTAGTTTGTTAGGT | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1436 | 1508 | 6.819649 | CCACCGATTGATTAGTTTGTTAGGTA | 59.180 | 38.462 | 0.00 | 0.00 | 0.00 | 3.08 |
1437 | 1509 | 7.201582 | CCACCGATTGATTAGTTTGTTAGGTAC | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 3.34 |
1458 | 1556 | 6.694844 | GGTACTACTTGCCGTTTTAGATAGTC | 59.305 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
1511 | 1609 | 6.070656 | AGATCAACCTTTTCTGTTTCATCCA | 58.929 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1539 | 1637 | 2.686835 | GCAGGAGGAGGAGGCAGT | 60.687 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
1575 | 1673 | 4.803426 | CACCGTGGAGGAGCGAGC | 62.803 | 72.222 | 0.00 | 0.00 | 45.00 | 5.03 |
1757 | 1863 | 0.805322 | CTGCTCGTCACCAGATCTGC | 60.805 | 60.000 | 17.76 | 3.80 | 0.00 | 4.26 |
1774 | 1883 | 6.708502 | CAGATCTGCTACTAGTTACAGCTAGA | 59.291 | 42.308 | 10.38 | 15.09 | 40.54 | 2.43 |
1893 | 2002 | 4.979204 | TCGCTTTCCGACGTTGAT | 57.021 | 50.000 | 3.74 | 0.00 | 41.89 | 2.57 |
1894 | 2003 | 3.204505 | TCGCTTTCCGACGTTGATT | 57.795 | 47.368 | 3.74 | 0.00 | 41.89 | 2.57 |
1930 | 2059 | 2.099756 | ACTGCTTCGCTTTCTTTGCTTT | 59.900 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
1996 | 2130 | 4.136250 | GGCAAGCCGTATGGTACC | 57.864 | 61.111 | 4.43 | 4.43 | 37.67 | 3.34 |
2013 | 2147 | 2.413310 | ACCTGTGTTCGTCCTTGTTT | 57.587 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2019 | 2153 | 1.064357 | TGTTCGTCCTTGTTTTTCGCC | 59.936 | 47.619 | 0.00 | 0.00 | 0.00 | 5.54 |
2039 | 2174 | 5.236655 | GCCTGTTTATGGCTAGTTCTTTC | 57.763 | 43.478 | 0.00 | 0.00 | 46.38 | 2.62 |
2099 | 2234 | 4.644234 | TCTTTCACAATCTGCTTTCCACAA | 59.356 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
2107 | 2242 | 2.297033 | TCTGCTTTCCACAAAATCTGCC | 59.703 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
2111 | 2246 | 1.974265 | TTCCACAAAATCTGCCGTCA | 58.026 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2123 | 2258 | 4.330944 | TCTGCCGTCAAGTTCTTTTCTA | 57.669 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
2145 | 2280 | 9.706691 | TTCTAAGATTCGAGTTTAAGATTGTGT | 57.293 | 29.630 | 0.00 | 0.00 | 0.00 | 3.72 |
2155 | 2290 | 8.708742 | CGAGTTTAAGATTGTGTATTCAGTTGA | 58.291 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2160 | 2295 | 4.627467 | AGATTGTGTATTCAGTTGAGCGTC | 59.373 | 41.667 | 0.00 | 0.00 | 0.00 | 5.19 |
2176 | 2313 | 3.499048 | AGCGTCGAAATGTGTGTAGTAG | 58.501 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2177 | 2314 | 3.057736 | AGCGTCGAAATGTGTGTAGTAGT | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
2184 | 2321 | 8.019669 | GTCGAAATGTGTGTAGTAGTCTTAGAA | 58.980 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
2191 | 2328 | 9.909644 | TGTGTGTAGTAGTCTTAGAAAGAAATC | 57.090 | 33.333 | 0.00 | 0.00 | 39.67 | 2.17 |
2206 | 2344 | 8.733857 | AGAAAGAAATCGTTTGATGAATTGTC | 57.266 | 30.769 | 0.00 | 0.00 | 34.24 | 3.18 |
2408 | 2582 | 0.380378 | GCGTGTTGTGTTCATGGTGT | 59.620 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2410 | 2584 | 1.332816 | CGTGTTGTGTTCATGGTGTCG | 60.333 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2427 | 2601 | 2.825532 | TGTCGTCATCATCTTCTGGTGA | 59.174 | 45.455 | 0.00 | 0.00 | 42.83 | 4.02 |
2450 | 2624 | 2.092646 | AGAGTGTTGGCACCTGTAAACA | 60.093 | 45.455 | 0.00 | 0.00 | 46.35 | 2.83 |
2522 | 2696 | 3.754955 | TCACGTAACTTGCTATCACGAG | 58.245 | 45.455 | 0.00 | 0.00 | 36.51 | 4.18 |
2582 | 2756 | 4.165372 | TCTTTTGGGTCTCCAGTTTGTACT | 59.835 | 41.667 | 0.00 | 0.00 | 45.04 | 2.73 |
2614 | 2794 | 5.413499 | CCTTCAAGAATTCGCCATTTCATT | 58.587 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2616 | 2796 | 6.183360 | CCTTCAAGAATTCGCCATTTCATTTG | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
2627 | 2807 | 4.813027 | CCATTTCATTTGGAGAACACCAG | 58.187 | 43.478 | 0.00 | 0.00 | 41.19 | 4.00 |
2645 | 2825 | 1.651138 | CAGACGCTCTTTCGATGACAC | 59.349 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
2650 | 2830 | 2.329379 | GCTCTTTCGATGACACTTCGT | 58.671 | 47.619 | 0.00 | 0.00 | 37.82 | 3.85 |
2722 | 3064 | 7.552687 | GGATGTTGTTGGAAATCTAGTACATGA | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
2758 | 3101 | 4.295201 | TGTATGGTGCTAGTATCCAACCT | 58.705 | 43.478 | 6.31 | 0.00 | 34.80 | 3.50 |
2780 | 3123 | 0.838554 | TTTGGATGTCCGGAGTCCCA | 60.839 | 55.000 | 25.58 | 19.70 | 39.43 | 4.37 |
2803 | 3146 | 3.137385 | TGGCAGATGGCATAGGGGC | 62.137 | 63.158 | 4.78 | 6.04 | 46.12 | 5.80 |
2828 | 3171 | 4.838152 | GAAGATGGGCTGCGGCGA | 62.838 | 66.667 | 12.98 | 0.00 | 39.81 | 5.54 |
2831 | 3174 | 4.838152 | GATGGGCTGCGGCGAGAA | 62.838 | 66.667 | 12.98 | 0.00 | 39.81 | 2.87 |
2876 | 3219 | 3.753434 | CTGGCAGCGACGAGGTCT | 61.753 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2878 | 3221 | 4.803426 | GGCAGCGACGAGGTCTGG | 62.803 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
2941 | 3287 | 0.318441 | CTGGTCGAGTTGGAGCTCAA | 59.682 | 55.000 | 17.19 | 0.00 | 35.33 | 3.02 |
2951 | 3297 | 4.264543 | GTTGGAGCTCAACGAACATATG | 57.735 | 45.455 | 17.19 | 0.00 | 45.10 | 1.78 |
2973 | 3319 | 2.517875 | ATTGAGGCCCATGCGCTC | 60.518 | 61.111 | 9.73 | 0.00 | 38.85 | 5.03 |
2984 | 3330 | 1.789464 | CCATGCGCTCTCGTTATCTTC | 59.211 | 52.381 | 9.73 | 0.00 | 38.14 | 2.87 |
2986 | 3332 | 3.304726 | CCATGCGCTCTCGTTATCTTCTA | 60.305 | 47.826 | 9.73 | 0.00 | 38.14 | 2.10 |
2987 | 3333 | 3.335786 | TGCGCTCTCGTTATCTTCTAC | 57.664 | 47.619 | 9.73 | 0.00 | 38.14 | 2.59 |
2988 | 3334 | 2.943690 | TGCGCTCTCGTTATCTTCTACT | 59.056 | 45.455 | 9.73 | 0.00 | 38.14 | 2.57 |
2989 | 3335 | 3.002451 | TGCGCTCTCGTTATCTTCTACTC | 59.998 | 47.826 | 9.73 | 0.00 | 38.14 | 2.59 |
2990 | 3336 | 3.607542 | GCGCTCTCGTTATCTTCTACTCC | 60.608 | 52.174 | 0.00 | 0.00 | 38.14 | 3.85 |
2991 | 3337 | 3.058777 | CGCTCTCGTTATCTTCTACTCCC | 60.059 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2992 | 3338 | 4.139038 | GCTCTCGTTATCTTCTACTCCCT | 58.861 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
2993 | 3339 | 4.214758 | GCTCTCGTTATCTTCTACTCCCTC | 59.785 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2994 | 3340 | 4.716794 | TCTCGTTATCTTCTACTCCCTCC | 58.283 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2995 | 3341 | 3.474600 | TCGTTATCTTCTACTCCCTCCG | 58.525 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2996 | 3342 | 3.118112 | TCGTTATCTTCTACTCCCTCCGT | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
2997 | 3343 | 3.631227 | CGTTATCTTCTACTCCCTCCGTT | 59.369 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
2998 | 3344 | 4.261114 | CGTTATCTTCTACTCCCTCCGTTC | 60.261 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2999 | 3345 | 2.140839 | TCTTCTACTCCCTCCGTTCC | 57.859 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3000 | 3346 | 1.639628 | TCTTCTACTCCCTCCGTTCCT | 59.360 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
3001 | 3347 | 2.848694 | TCTTCTACTCCCTCCGTTCCTA | 59.151 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
3002 | 3348 | 3.267812 | TCTTCTACTCCCTCCGTTCCTAA | 59.732 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
3003 | 3349 | 3.744940 | TCTACTCCCTCCGTTCCTAAA | 57.255 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
3004 | 3350 | 4.261411 | TCTACTCCCTCCGTTCCTAAAT | 57.739 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
3005 | 3351 | 5.393068 | TCTACTCCCTCCGTTCCTAAATA | 57.607 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3006 | 3352 | 5.136105 | TCTACTCCCTCCGTTCCTAAATAC | 58.864 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
3007 | 3353 | 3.991683 | ACTCCCTCCGTTCCTAAATACT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
3008 | 3354 | 4.359996 | ACTCCCTCCGTTCCTAAATACTT | 58.640 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
3009 | 3355 | 4.161754 | ACTCCCTCCGTTCCTAAATACTTG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
3010 | 3356 | 4.098894 | TCCCTCCGTTCCTAAATACTTGT | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
3011 | 3357 | 4.161001 | TCCCTCCGTTCCTAAATACTTGTC | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
3012 | 3358 | 4.161754 | CCCTCCGTTCCTAAATACTTGTCT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
3013 | 3359 | 5.338137 | CCCTCCGTTCCTAAATACTTGTCTT | 60.338 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3014 | 3360 | 6.171213 | CCTCCGTTCCTAAATACTTGTCTTT | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3015 | 3361 | 6.313164 | CCTCCGTTCCTAAATACTTGTCTTTC | 59.687 | 42.308 | 0.00 | 0.00 | 0.00 | 2.62 |
3016 | 3362 | 7.001099 | TCCGTTCCTAAATACTTGTCTTTCT | 57.999 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3017 | 3363 | 8.125978 | TCCGTTCCTAAATACTTGTCTTTCTA | 57.874 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
3018 | 3364 | 8.248945 | TCCGTTCCTAAATACTTGTCTTTCTAG | 58.751 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
3019 | 3365 | 7.491696 | CCGTTCCTAAATACTTGTCTTTCTAGG | 59.508 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
3020 | 3366 | 7.010275 | CGTTCCTAAATACTTGTCTTTCTAGGC | 59.990 | 40.741 | 0.00 | 0.00 | 0.00 | 3.93 |
3021 | 3367 | 7.490657 | TCCTAAATACTTGTCTTTCTAGGCA | 57.509 | 36.000 | 0.00 | 0.00 | 33.22 | 4.75 |
3022 | 3368 | 8.090788 | TCCTAAATACTTGTCTTTCTAGGCAT | 57.909 | 34.615 | 0.00 | 0.00 | 35.56 | 4.40 |
3023 | 3369 | 8.548877 | TCCTAAATACTTGTCTTTCTAGGCATT | 58.451 | 33.333 | 0.00 | 0.00 | 35.56 | 3.56 |
3024 | 3370 | 9.178758 | CCTAAATACTTGTCTTTCTAGGCATTT | 57.821 | 33.333 | 0.00 | 0.00 | 35.56 | 2.32 |
3026 | 3372 | 8.635765 | AAATACTTGTCTTTCTAGGCATTTCA | 57.364 | 30.769 | 0.00 | 0.00 | 35.56 | 2.69 |
3027 | 3373 | 8.635765 | AATACTTGTCTTTCTAGGCATTTCAA | 57.364 | 30.769 | 0.00 | 0.00 | 35.56 | 2.69 |
3028 | 3374 | 6.319141 | ACTTGTCTTTCTAGGCATTTCAAC | 57.681 | 37.500 | 0.00 | 0.00 | 35.56 | 3.18 |
3029 | 3375 | 5.827797 | ACTTGTCTTTCTAGGCATTTCAACA | 59.172 | 36.000 | 0.00 | 0.00 | 35.56 | 3.33 |
3030 | 3376 | 6.321181 | ACTTGTCTTTCTAGGCATTTCAACAA | 59.679 | 34.615 | 0.00 | 0.00 | 35.56 | 2.83 |
3031 | 3377 | 6.317789 | TGTCTTTCTAGGCATTTCAACAAG | 57.682 | 37.500 | 0.00 | 0.00 | 29.10 | 3.16 |
3032 | 3378 | 5.827797 | TGTCTTTCTAGGCATTTCAACAAGT | 59.172 | 36.000 | 0.00 | 0.00 | 29.10 | 3.16 |
3033 | 3379 | 6.145535 | GTCTTTCTAGGCATTTCAACAAGTG | 58.854 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3034 | 3380 | 6.017109 | GTCTTTCTAGGCATTTCAACAAGTGA | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
3035 | 3381 | 5.689383 | TTCTAGGCATTTCAACAAGTGAC | 57.311 | 39.130 | 0.00 | 0.00 | 35.39 | 3.67 |
3036 | 3382 | 4.973168 | TCTAGGCATTTCAACAAGTGACT | 58.027 | 39.130 | 0.00 | 0.00 | 40.60 | 3.41 |
3037 | 3383 | 6.109156 | TCTAGGCATTTCAACAAGTGACTA | 57.891 | 37.500 | 0.00 | 0.00 | 38.51 | 2.59 |
3038 | 3384 | 5.932303 | TCTAGGCATTTCAACAAGTGACTAC | 59.068 | 40.000 | 0.00 | 0.00 | 38.51 | 2.73 |
3039 | 3385 | 4.460263 | AGGCATTTCAACAAGTGACTACA | 58.540 | 39.130 | 0.00 | 0.00 | 35.84 | 2.74 |
3040 | 3386 | 5.072741 | AGGCATTTCAACAAGTGACTACAT | 58.927 | 37.500 | 0.00 | 0.00 | 35.84 | 2.29 |
3041 | 3387 | 6.237901 | AGGCATTTCAACAAGTGACTACATA | 58.762 | 36.000 | 0.00 | 0.00 | 35.84 | 2.29 |
3042 | 3388 | 6.149474 | AGGCATTTCAACAAGTGACTACATAC | 59.851 | 38.462 | 0.00 | 0.00 | 35.84 | 2.39 |
3043 | 3389 | 6.015504 | GCATTTCAACAAGTGACTACATACG | 58.984 | 40.000 | 0.00 | 0.00 | 35.39 | 3.06 |
3044 | 3390 | 6.534059 | CATTTCAACAAGTGACTACATACGG | 58.466 | 40.000 | 0.00 | 0.00 | 35.39 | 4.02 |
3045 | 3391 | 5.456548 | TTCAACAAGTGACTACATACGGA | 57.543 | 39.130 | 0.00 | 0.00 | 35.39 | 4.69 |
3046 | 3392 | 5.055642 | TCAACAAGTGACTACATACGGAG | 57.944 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
3047 | 3393 | 3.505464 | ACAAGTGACTACATACGGAGC | 57.495 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
3048 | 3394 | 2.823747 | ACAAGTGACTACATACGGAGCA | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
3049 | 3395 | 3.257375 | ACAAGTGACTACATACGGAGCAA | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
3050 | 3396 | 4.242475 | CAAGTGACTACATACGGAGCAAA | 58.758 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
3051 | 3397 | 4.530710 | AGTGACTACATACGGAGCAAAA | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
3052 | 3398 | 5.086104 | AGTGACTACATACGGAGCAAAAT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
3053 | 3399 | 4.870426 | AGTGACTACATACGGAGCAAAATG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
3054 | 3400 | 4.868171 | GTGACTACATACGGAGCAAAATGA | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3055 | 3401 | 5.005779 | GTGACTACATACGGAGCAAAATGAG | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3056 | 3402 | 5.086104 | ACTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3057 | 3403 | 4.870426 | ACTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3058 | 3404 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3059 | 3405 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
3060 | 3406 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3061 | 3407 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3062 | 3408 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
3063 | 3409 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
3064 | 3410 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
3065 | 3411 | 4.631377 | CGGAGCAAAATGAGTGAATCTACA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3066 | 3412 | 5.446473 | CGGAGCAAAATGAGTGAATCTACAC | 60.446 | 44.000 | 0.00 | 0.00 | 40.60 | 2.90 |
3109 | 3455 | 7.812690 | ACATCCGTATGTAGTAGTCATGTAA | 57.187 | 36.000 | 0.00 | 0.00 | 44.66 | 2.41 |
3110 | 3456 | 8.229253 | ACATCCGTATGTAGTAGTCATGTAAA | 57.771 | 34.615 | 0.00 | 0.00 | 44.66 | 2.01 |
3111 | 3457 | 8.689061 | ACATCCGTATGTAGTAGTCATGTAAAA | 58.311 | 33.333 | 0.00 | 0.00 | 44.66 | 1.52 |
3112 | 3458 | 9.692749 | CATCCGTATGTAGTAGTCATGTAAAAT | 57.307 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3113 | 3459 | 9.692749 | ATCCGTATGTAGTAGTCATGTAAAATG | 57.307 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3114 | 3460 | 8.689061 | TCCGTATGTAGTAGTCATGTAAAATGT | 58.311 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
3115 | 3461 | 8.965172 | CCGTATGTAGTAGTCATGTAAAATGTC | 58.035 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
3116 | 3462 | 9.731819 | CGTATGTAGTAGTCATGTAAAATGTCT | 57.268 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3143 | 3489 | 8.520351 | AGAAAAACAAATATTTAGGAACGGAGG | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
3144 | 3490 | 6.769134 | AAACAAATATTTAGGAACGGAGGG | 57.231 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
3145 | 3491 | 5.703730 | ACAAATATTTAGGAACGGAGGGA | 57.296 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
3146 | 3492 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3147 | 3493 | 5.191124 | ACAAATATTTAGGAACGGAGGGAGT | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3148 | 3494 | 6.384886 | ACAAATATTTAGGAACGGAGGGAGTA | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3178 | 3524 | 0.527565 | GCATGGCTCGGTGACATTTT | 59.472 | 50.000 | 0.00 | 0.00 | 43.01 | 1.82 |
3179 | 3525 | 1.067635 | GCATGGCTCGGTGACATTTTT | 60.068 | 47.619 | 0.00 | 0.00 | 43.01 | 1.94 |
3180 | 3526 | 2.598589 | CATGGCTCGGTGACATTTTTG | 58.401 | 47.619 | 0.00 | 0.00 | 43.01 | 2.44 |
3181 | 3527 | 0.313672 | TGGCTCGGTGACATTTTTGC | 59.686 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
3182 | 3528 | 0.388520 | GGCTCGGTGACATTTTTGCC | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3183 | 3529 | 0.313672 | GCTCGGTGACATTTTTGCCA | 59.686 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
3213 | 3560 | 1.661341 | CTGCAATAGGGCACTCTGTC | 58.339 | 55.000 | 0.00 | 0.00 | 39.25 | 3.51 |
3233 | 3580 | 7.035004 | TCTGTCAACTCCAAACATTTTCTTTG | 58.965 | 34.615 | 0.00 | 0.00 | 0.00 | 2.77 |
3243 | 3592 | 6.398095 | CAAACATTTTCTTTGGGGACTATCC | 58.602 | 40.000 | 0.00 | 0.00 | 35.23 | 2.59 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
8 | 9 | 4.629523 | TTCGCGCCGGGGTTTTCT | 62.630 | 61.111 | 20.83 | 0.00 | 0.00 | 2.52 |
9 | 10 | 4.097863 | CTTCGCGCCGGGGTTTTC | 62.098 | 66.667 | 20.83 | 1.85 | 0.00 | 2.29 |
19 | 20 | 4.873129 | TCGCCATCTCCTTCGCGC | 62.873 | 66.667 | 0.00 | 0.00 | 44.12 | 6.86 |
20 | 21 | 2.202743 | TTCGCCATCTCCTTCGCG | 60.203 | 61.111 | 0.00 | 0.00 | 45.76 | 5.87 |
21 | 22 | 2.517450 | CGTTCGCCATCTCCTTCGC | 61.517 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
22 | 23 | 0.867753 | CTCGTTCGCCATCTCCTTCG | 60.868 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
23 | 24 | 0.528684 | CCTCGTTCGCCATCTCCTTC | 60.529 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
24 | 25 | 0.970937 | TCCTCGTTCGCCATCTCCTT | 60.971 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
25 | 26 | 1.379977 | TCCTCGTTCGCCATCTCCT | 60.380 | 57.895 | 0.00 | 0.00 | 0.00 | 3.69 |
26 | 27 | 1.066587 | CTCCTCGTTCGCCATCTCC | 59.933 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
27 | 28 | 1.066587 | CCTCCTCGTTCGCCATCTC | 59.933 | 63.158 | 0.00 | 0.00 | 0.00 | 2.75 |
28 | 29 | 2.427245 | CCCTCCTCGTTCGCCATCT | 61.427 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
29 | 30 | 2.107141 | CCCTCCTCGTTCGCCATC | 59.893 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
30 | 31 | 3.470888 | CCCCTCCTCGTTCGCCAT | 61.471 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
33 | 34 | 3.839432 | CTCCCCCTCCTCGTTCGC | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
34 | 35 | 3.839432 | GCTCCCCCTCCTCGTTCG | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 3.95 |
35 | 36 | 3.471806 | GGCTCCCCCTCCTCGTTC | 61.472 | 72.222 | 0.00 | 0.00 | 0.00 | 3.95 |
62 | 63 | 3.186047 | CCAATGTCGACGCCCGTC | 61.186 | 66.667 | 11.62 | 10.57 | 41.40 | 4.79 |
68 | 69 | 4.752879 | ACCGGGCCAATGTCGACG | 62.753 | 66.667 | 11.62 | 0.00 | 0.00 | 5.12 |
69 | 70 | 3.124921 | CACCGGGCCAATGTCGAC | 61.125 | 66.667 | 9.11 | 9.11 | 0.00 | 4.20 |
72 | 73 | 3.134127 | GAGCACCGGGCCAATGTC | 61.134 | 66.667 | 6.32 | 0.00 | 46.50 | 3.06 |
73 | 74 | 4.740822 | GGAGCACCGGGCCAATGT | 62.741 | 66.667 | 6.32 | 0.00 | 46.50 | 2.71 |
74 | 75 | 4.431131 | AGGAGCACCGGGCCAATG | 62.431 | 66.667 | 6.32 | 1.25 | 46.50 | 2.82 |
75 | 76 | 4.431131 | CAGGAGCACCGGGCCAAT | 62.431 | 66.667 | 6.32 | 0.00 | 46.50 | 3.16 |
102 | 103 | 3.213402 | CTCCTCCTCCTCGACCGC | 61.213 | 72.222 | 0.00 | 0.00 | 0.00 | 5.68 |
103 | 104 | 2.517402 | CCTCCTCCTCCTCGACCG | 60.517 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
104 | 105 | 1.454295 | GACCTCCTCCTCCTCGACC | 60.454 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
105 | 106 | 1.820481 | CGACCTCCTCCTCCTCGAC | 60.820 | 68.421 | 0.00 | 0.00 | 0.00 | 4.20 |
106 | 107 | 2.590645 | CGACCTCCTCCTCCTCGA | 59.409 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
107 | 108 | 3.213402 | GCGACCTCCTCCTCCTCG | 61.213 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
108 | 109 | 2.835895 | GGCGACCTCCTCCTCCTC | 60.836 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
109 | 110 | 4.824515 | CGGCGACCTCCTCCTCCT | 62.825 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
111 | 112 | 3.519930 | GACGGCGACCTCCTCCTC | 61.520 | 72.222 | 16.62 | 0.00 | 0.00 | 3.71 |
114 | 115 | 4.176851 | GACGACGGCGACCTCCTC | 62.177 | 72.222 | 22.49 | 0.00 | 41.64 | 3.71 |
124 | 125 | 4.838152 | CAGGCCCATGGACGACGG | 62.838 | 72.222 | 15.22 | 0.00 | 34.63 | 4.79 |
139 | 140 | 1.159713 | TGGATTTAGCATCGCCGCAG | 61.160 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
140 | 141 | 0.746204 | TTGGATTTAGCATCGCCGCA | 60.746 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
141 | 142 | 0.380378 | TTTGGATTTAGCATCGCCGC | 59.620 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
142 | 143 | 2.842208 | TTTTGGATTTAGCATCGCCG | 57.158 | 45.000 | 0.00 | 0.00 | 0.00 | 6.46 |
195 | 196 | 3.995199 | TGCCAAACTTTGTCAACAACAA | 58.005 | 36.364 | 0.00 | 0.00 | 46.11 | 2.83 |
196 | 197 | 3.667497 | TGCCAAACTTTGTCAACAACA | 57.333 | 38.095 | 0.00 | 0.00 | 35.28 | 3.33 |
197 | 198 | 4.999751 | TTTGCCAAACTTTGTCAACAAC | 57.000 | 36.364 | 0.00 | 0.00 | 35.28 | 3.32 |
198 | 199 | 4.999950 | ACATTTGCCAAACTTTGTCAACAA | 59.000 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
199 | 200 | 4.573900 | ACATTTGCCAAACTTTGTCAACA | 58.426 | 34.783 | 0.00 | 0.00 | 0.00 | 3.33 |
200 | 201 | 5.544136 | AACATTTGCCAAACTTTGTCAAC | 57.456 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
201 | 202 | 6.205464 | TGAAAACATTTGCCAAACTTTGTCAA | 59.795 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
202 | 203 | 5.702670 | TGAAAACATTTGCCAAACTTTGTCA | 59.297 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
203 | 204 | 6.175712 | TGAAAACATTTGCCAAACTTTGTC | 57.824 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
204 | 205 | 6.566197 | TTGAAAACATTTGCCAAACTTTGT | 57.434 | 29.167 | 0.00 | 0.00 | 0.00 | 2.83 |
205 | 206 | 6.020520 | GCATTGAAAACATTTGCCAAACTTTG | 60.021 | 34.615 | 0.00 | 0.00 | 0.00 | 2.77 |
206 | 207 | 6.035217 | GCATTGAAAACATTTGCCAAACTTT | 58.965 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
207 | 208 | 5.357596 | AGCATTGAAAACATTTGCCAAACTT | 59.642 | 32.000 | 0.00 | 0.00 | 33.85 | 2.66 |
208 | 209 | 4.883006 | AGCATTGAAAACATTTGCCAAACT | 59.117 | 33.333 | 0.00 | 0.00 | 33.85 | 2.66 |
209 | 210 | 5.172460 | AGCATTGAAAACATTTGCCAAAC | 57.828 | 34.783 | 0.00 | 0.00 | 33.85 | 2.93 |
210 | 211 | 5.831702 | AAGCATTGAAAACATTTGCCAAA | 57.168 | 30.435 | 0.00 | 0.00 | 33.85 | 3.28 |
224 | 225 | 9.500326 | TTCAAGATGAAACTGTGCAAGCATTGA | 62.500 | 37.037 | 0.00 | 0.00 | 40.23 | 2.57 |
225 | 226 | 7.445155 | TTCAAGATGAAACTGTGCAAGCATTG | 61.445 | 38.462 | 0.00 | 0.00 | 40.56 | 2.82 |
226 | 227 | 4.038282 | TCAAGATGAAACTGTGCAAGCATT | 59.962 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
227 | 228 | 3.570975 | TCAAGATGAAACTGTGCAAGCAT | 59.429 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
228 | 229 | 2.950975 | TCAAGATGAAACTGTGCAAGCA | 59.049 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
229 | 230 | 3.631145 | TCAAGATGAAACTGTGCAAGC | 57.369 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
240 | 241 | 9.251792 | CTTTCACAAATGTCATTTCAAGATGAA | 57.748 | 29.630 | 7.87 | 9.92 | 37.75 | 2.57 |
241 | 242 | 8.415553 | ACTTTCACAAATGTCATTTCAAGATGA | 58.584 | 29.630 | 7.87 | 5.11 | 33.81 | 2.92 |
242 | 243 | 8.484799 | CACTTTCACAAATGTCATTTCAAGATG | 58.515 | 33.333 | 7.87 | 0.00 | 0.00 | 2.90 |
243 | 244 | 7.654520 | CCACTTTCACAAATGTCATTTCAAGAT | 59.345 | 33.333 | 7.87 | 0.00 | 0.00 | 2.40 |
244 | 245 | 6.979817 | CCACTTTCACAAATGTCATTTCAAGA | 59.020 | 34.615 | 7.87 | 4.20 | 0.00 | 3.02 |
245 | 246 | 6.757947 | ACCACTTTCACAAATGTCATTTCAAG | 59.242 | 34.615 | 7.87 | 10.03 | 0.00 | 3.02 |
246 | 247 | 6.534436 | CACCACTTTCACAAATGTCATTTCAA | 59.466 | 34.615 | 7.87 | 0.00 | 0.00 | 2.69 |
247 | 248 | 6.041511 | CACCACTTTCACAAATGTCATTTCA | 58.958 | 36.000 | 7.87 | 0.00 | 0.00 | 2.69 |
248 | 249 | 5.463061 | CCACCACTTTCACAAATGTCATTTC | 59.537 | 40.000 | 7.87 | 0.00 | 0.00 | 2.17 |
249 | 250 | 5.358922 | CCACCACTTTCACAAATGTCATTT | 58.641 | 37.500 | 4.91 | 4.91 | 0.00 | 2.32 |
250 | 251 | 4.740334 | GCCACCACTTTCACAAATGTCATT | 60.740 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
251 | 252 | 3.243839 | GCCACCACTTTCACAAATGTCAT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
252 | 253 | 2.100584 | GCCACCACTTTCACAAATGTCA | 59.899 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
253 | 254 | 2.100584 | TGCCACCACTTTCACAAATGTC | 59.899 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
254 | 255 | 2.106566 | TGCCACCACTTTCACAAATGT | 58.893 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
255 | 256 | 2.886862 | TGCCACCACTTTCACAAATG | 57.113 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
256 | 257 | 3.902881 | TTTGCCACCACTTTCACAAAT | 57.097 | 38.095 | 0.00 | 0.00 | 0.00 | 2.32 |
257 | 258 | 3.685139 | TTTTGCCACCACTTTCACAAA | 57.315 | 38.095 | 0.00 | 0.00 | 0.00 | 2.83 |
258 | 259 | 3.685139 | TTTTTGCCACCACTTTCACAA | 57.315 | 38.095 | 0.00 | 0.00 | 0.00 | 3.33 |
310 | 311 | 3.502211 | AGCGGATGAACAGTAAAAACTGG | 59.498 | 43.478 | 10.08 | 0.00 | 41.76 | 4.00 |
314 | 315 | 3.745799 | TCCAGCGGATGAACAGTAAAAA | 58.254 | 40.909 | 0.00 | 0.00 | 0.00 | 1.94 |
351 | 352 | 4.202441 | ACTAAAATGCGCAGAATCAGGAT | 58.798 | 39.130 | 18.32 | 0.00 | 0.00 | 3.24 |
363 | 364 | 3.243877 | CACCTCTCATCGACTAAAATGCG | 59.756 | 47.826 | 0.00 | 0.00 | 0.00 | 4.73 |
372 | 373 | 0.312416 | CCGATCCACCTCTCATCGAC | 59.688 | 60.000 | 2.20 | 0.00 | 41.61 | 4.20 |
385 | 386 | 2.846371 | GGCTGTCATATGCCGATCC | 58.154 | 57.895 | 0.00 | 0.00 | 39.71 | 3.36 |
429 | 430 | 3.785486 | TCGAGGTTTGTCTCATGCTATG | 58.215 | 45.455 | 0.00 | 0.00 | 33.59 | 2.23 |
431 | 432 | 3.953712 | TTCGAGGTTTGTCTCATGCTA | 57.046 | 42.857 | 0.00 | 0.00 | 33.59 | 3.49 |
488 | 492 | 2.126882 | AGCAATGGGGTACTGCAGATA | 58.873 | 47.619 | 23.35 | 6.31 | 38.58 | 1.98 |
568 | 573 | 3.483808 | TGAAAAATTGGGCAAACTCCC | 57.516 | 42.857 | 0.00 | 0.00 | 46.73 | 4.30 |
616 | 621 | 0.545071 | AAGCAAAACCTGGGATGGGG | 60.545 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
763 | 776 | 1.760613 | ACTGTTCACACGGAAGGAAGA | 59.239 | 47.619 | 0.00 | 0.00 | 35.82 | 2.87 |
768 | 781 | 2.993899 | GGATACACTGTTCACACGGAAG | 59.006 | 50.000 | 0.00 | 0.00 | 35.82 | 3.46 |
769 | 782 | 2.365941 | TGGATACACTGTTCACACGGAA | 59.634 | 45.455 | 0.00 | 0.00 | 46.17 | 4.30 |
805 | 826 | 2.735134 | GAGTAGGTGCCAACAAACGTAG | 59.265 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
807 | 828 | 1.140252 | AGAGTAGGTGCCAACAAACGT | 59.860 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
808 | 829 | 1.878953 | AGAGTAGGTGCCAACAAACG | 58.121 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
816 | 848 | 4.703093 | GTCTGGATAGATAGAGTAGGTGCC | 59.297 | 50.000 | 0.00 | 0.00 | 34.94 | 5.01 |
821 | 853 | 4.839121 | AGCCGTCTGGATAGATAGAGTAG | 58.161 | 47.826 | 0.00 | 0.00 | 37.49 | 2.57 |
822 | 854 | 4.532916 | AGAGCCGTCTGGATAGATAGAGTA | 59.467 | 45.833 | 0.00 | 0.00 | 37.49 | 2.59 |
823 | 855 | 3.329520 | AGAGCCGTCTGGATAGATAGAGT | 59.670 | 47.826 | 0.00 | 0.00 | 37.49 | 3.24 |
824 | 856 | 3.950397 | AGAGCCGTCTGGATAGATAGAG | 58.050 | 50.000 | 0.00 | 0.00 | 37.49 | 2.43 |
825 | 857 | 4.374689 | AAGAGCCGTCTGGATAGATAGA | 57.625 | 45.455 | 0.00 | 0.00 | 37.49 | 1.98 |
973 | 1016 | 2.901840 | CTTGTGCACAGTGGCCGT | 60.902 | 61.111 | 20.59 | 0.00 | 0.00 | 5.68 |
1003 | 1046 | 1.172175 | CTTTGCTTGGCTTCTCCTCC | 58.828 | 55.000 | 0.00 | 0.00 | 35.26 | 4.30 |
1081 | 1124 | 0.766288 | CAGGAATCCCCTCTCTCCCC | 60.766 | 65.000 | 0.00 | 0.00 | 45.60 | 4.81 |
1249 | 1321 | 2.297597 | AGAACAAGAAGAGAGACGGGTG | 59.702 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1427 | 1499 | 4.605640 | AACGGCAAGTAGTACCTAACAA | 57.394 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
1429 | 1501 | 6.389906 | TCTAAAACGGCAAGTAGTACCTAAC | 58.610 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
1430 | 1502 | 6.588719 | TCTAAAACGGCAAGTAGTACCTAA | 57.411 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
1431 | 1503 | 6.780457 | ATCTAAAACGGCAAGTAGTACCTA | 57.220 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
1434 | 1506 | 6.413235 | CGACTATCTAAAACGGCAAGTAGTAC | 59.587 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
1435 | 1507 | 6.489675 | CGACTATCTAAAACGGCAAGTAGTA | 58.510 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1436 | 1508 | 5.338365 | CGACTATCTAAAACGGCAAGTAGT | 58.662 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
1437 | 1509 | 4.206609 | GCGACTATCTAAAACGGCAAGTAG | 59.793 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
1480 | 1578 | 4.349342 | ACAGAAAAGGTTGATCTCCACTCT | 59.651 | 41.667 | 9.47 | 5.67 | 0.00 | 3.24 |
1511 | 1609 | 5.215069 | CTCCTCCTCCTGCATATATACCAT | 58.785 | 45.833 | 0.00 | 0.00 | 0.00 | 3.55 |
1734 | 1840 | 2.236223 | ATCTGGTGACGAGCAGCTGG | 62.236 | 60.000 | 17.12 | 0.00 | 45.71 | 4.85 |
1757 | 1863 | 7.133513 | CGAACCAATCTAGCTGTAACTAGTAG | 58.866 | 42.308 | 0.00 | 0.00 | 40.50 | 2.57 |
1996 | 2130 | 3.350912 | CGAAAAACAAGGACGAACACAG | 58.649 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
2019 | 2153 | 4.640647 | GGGGAAAGAACTAGCCATAAACAG | 59.359 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
2030 | 2164 | 3.076350 | TCCTGCGGGGAAAGAACTA | 57.924 | 52.632 | 12.87 | 0.00 | 41.91 | 2.24 |
2067 | 2202 | 8.862550 | AAGCAGATTGTGAAAGAACTTTTTAG | 57.137 | 30.769 | 1.33 | 0.00 | 32.11 | 1.85 |
2069 | 2204 | 7.278646 | GGAAAGCAGATTGTGAAAGAACTTTTT | 59.721 | 33.333 | 1.33 | 0.00 | 32.11 | 1.94 |
2074 | 2209 | 4.978580 | GTGGAAAGCAGATTGTGAAAGAAC | 59.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2099 | 2234 | 4.580580 | AGAAAAGAACTTGACGGCAGATTT | 59.419 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2107 | 2242 | 7.115095 | ACTCGAATCTTAGAAAAGAACTTGACG | 59.885 | 37.037 | 0.00 | 0.00 | 44.75 | 4.35 |
2145 | 2280 | 4.091365 | CACATTTCGACGCTCAACTGAATA | 59.909 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
2155 | 2290 | 2.433868 | ACTACACACATTTCGACGCT | 57.566 | 45.000 | 0.00 | 0.00 | 0.00 | 5.07 |
2160 | 2295 | 8.738199 | TTTCTAAGACTACTACACACATTTCG | 57.262 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
2184 | 2321 | 7.920151 | TGTTGACAATTCATCAAACGATTTCTT | 59.080 | 29.630 | 3.72 | 0.00 | 37.80 | 2.52 |
2191 | 2328 | 6.810888 | AAAGTGTTGACAATTCATCAAACG | 57.189 | 33.333 | 3.72 | 0.00 | 37.80 | 3.60 |
2238 | 2376 | 7.064134 | TCGTAAATCACTTTCGTGCTCATATTT | 59.936 | 33.333 | 0.00 | 0.00 | 40.99 | 1.40 |
2408 | 2582 | 5.133221 | TCTATCACCAGAAGATGATGACGA | 58.867 | 41.667 | 0.00 | 0.00 | 36.26 | 4.20 |
2410 | 2584 | 6.183360 | ACACTCTATCACCAGAAGATGATGAC | 60.183 | 42.308 | 0.00 | 0.00 | 36.26 | 3.06 |
2427 | 2601 | 4.202419 | TGTTTACAGGTGCCAACACTCTAT | 60.202 | 41.667 | 0.00 | 0.00 | 46.57 | 1.98 |
2474 | 2648 | 5.464389 | AGCATTTTGACAAGTTTGAGAATGC | 59.536 | 36.000 | 17.70 | 17.70 | 0.00 | 3.56 |
2479 | 2653 | 6.143438 | GTGATGAGCATTTTGACAAGTTTGAG | 59.857 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2614 | 2794 | 0.033504 | GAGCGTCTGGTGTTCTCCAA | 59.966 | 55.000 | 0.00 | 0.00 | 37.01 | 3.53 |
2616 | 2796 | 0.318762 | AAGAGCGTCTGGTGTTCTCC | 59.681 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2650 | 2830 | 7.390440 | ACATTCAACCATCGTCATTCTTCTTTA | 59.610 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
2722 | 3064 | 3.882888 | CACCATACAAAGGGCAACGATAT | 59.117 | 43.478 | 0.00 | 0.00 | 37.60 | 1.63 |
2758 | 3101 | 1.271163 | GGACTCCGGACATCCAAACAA | 60.271 | 52.381 | 20.76 | 0.00 | 35.14 | 2.83 |
2780 | 3123 | 2.671370 | CTATGCCATCTGCCACCGCT | 62.671 | 60.000 | 0.00 | 0.00 | 40.16 | 5.52 |
2803 | 3146 | 2.897350 | GCCCATCTTCCTTCGCCG | 60.897 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
2808 | 3151 | 2.273449 | CCGCAGCCCATCTTCCTT | 59.727 | 61.111 | 0.00 | 0.00 | 0.00 | 3.36 |
2828 | 3171 | 1.599047 | CGCCACTGGTCCAGATTCT | 59.401 | 57.895 | 26.18 | 0.00 | 35.18 | 2.40 |
2831 | 3174 | 4.101448 | GCCGCCACTGGTCCAGAT | 62.101 | 66.667 | 26.18 | 7.01 | 35.18 | 2.90 |
2916 | 3262 | 2.046892 | CAACTCGACCAGGGCCAG | 60.047 | 66.667 | 6.18 | 0.00 | 0.00 | 4.85 |
2941 | 3287 | 2.575532 | CTCAATGCCCCATATGTTCGT | 58.424 | 47.619 | 1.24 | 0.00 | 0.00 | 3.85 |
2946 | 3292 | 2.662309 | GGCCTCAATGCCCCATATG | 58.338 | 57.895 | 0.00 | 0.00 | 46.11 | 1.78 |
2973 | 3319 | 3.499157 | CGGAGGGAGTAGAAGATAACGAG | 59.501 | 52.174 | 0.00 | 0.00 | 0.00 | 4.18 |
2984 | 3330 | 5.139001 | AGTATTTAGGAACGGAGGGAGTAG | 58.861 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
2986 | 3332 | 3.991683 | AGTATTTAGGAACGGAGGGAGT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2987 | 3333 | 4.161754 | ACAAGTATTTAGGAACGGAGGGAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2988 | 3334 | 4.098894 | ACAAGTATTTAGGAACGGAGGGA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2989 | 3335 | 4.161754 | AGACAAGTATTTAGGAACGGAGGG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2990 | 3336 | 5.340439 | AGACAAGTATTTAGGAACGGAGG | 57.660 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2991 | 3337 | 7.097834 | AGAAAGACAAGTATTTAGGAACGGAG | 58.902 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2992 | 3338 | 7.001099 | AGAAAGACAAGTATTTAGGAACGGA | 57.999 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2993 | 3339 | 7.491696 | CCTAGAAAGACAAGTATTTAGGAACGG | 59.508 | 40.741 | 4.01 | 0.00 | 26.70 | 4.44 |
2994 | 3340 | 7.010275 | GCCTAGAAAGACAAGTATTTAGGAACG | 59.990 | 40.741 | 11.40 | 0.00 | 26.70 | 3.95 |
2995 | 3341 | 7.822822 | TGCCTAGAAAGACAAGTATTTAGGAAC | 59.177 | 37.037 | 11.40 | 0.00 | 26.70 | 3.62 |
2996 | 3342 | 7.913789 | TGCCTAGAAAGACAAGTATTTAGGAA | 58.086 | 34.615 | 11.40 | 1.02 | 26.70 | 3.36 |
2997 | 3343 | 7.490657 | TGCCTAGAAAGACAAGTATTTAGGA | 57.509 | 36.000 | 11.40 | 0.00 | 26.70 | 2.94 |
2998 | 3344 | 8.738645 | AATGCCTAGAAAGACAAGTATTTAGG | 57.261 | 34.615 | 5.26 | 5.26 | 0.00 | 2.69 |
3000 | 3346 | 9.733556 | TGAAATGCCTAGAAAGACAAGTATTTA | 57.266 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3001 | 3347 | 8.635765 | TGAAATGCCTAGAAAGACAAGTATTT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3002 | 3348 | 8.515414 | GTTGAAATGCCTAGAAAGACAAGTATT | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
3003 | 3349 | 7.665559 | TGTTGAAATGCCTAGAAAGACAAGTAT | 59.334 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
3004 | 3350 | 6.995686 | TGTTGAAATGCCTAGAAAGACAAGTA | 59.004 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
3005 | 3351 | 5.827797 | TGTTGAAATGCCTAGAAAGACAAGT | 59.172 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3006 | 3352 | 6.317789 | TGTTGAAATGCCTAGAAAGACAAG | 57.682 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
3007 | 3353 | 6.321181 | ACTTGTTGAAATGCCTAGAAAGACAA | 59.679 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3008 | 3354 | 5.827797 | ACTTGTTGAAATGCCTAGAAAGACA | 59.172 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3009 | 3355 | 6.017109 | TCACTTGTTGAAATGCCTAGAAAGAC | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3010 | 3356 | 6.017109 | GTCACTTGTTGAAATGCCTAGAAAGA | 60.017 | 38.462 | 0.00 | 0.00 | 35.39 | 2.52 |
3011 | 3357 | 6.016777 | AGTCACTTGTTGAAATGCCTAGAAAG | 60.017 | 38.462 | 0.00 | 0.00 | 35.39 | 2.62 |
3012 | 3358 | 5.827797 | AGTCACTTGTTGAAATGCCTAGAAA | 59.172 | 36.000 | 0.00 | 0.00 | 35.39 | 2.52 |
3013 | 3359 | 5.376625 | AGTCACTTGTTGAAATGCCTAGAA | 58.623 | 37.500 | 0.00 | 0.00 | 35.39 | 2.10 |
3014 | 3360 | 4.973168 | AGTCACTTGTTGAAATGCCTAGA | 58.027 | 39.130 | 0.00 | 0.00 | 35.39 | 2.43 |
3015 | 3361 | 5.700832 | TGTAGTCACTTGTTGAAATGCCTAG | 59.299 | 40.000 | 0.00 | 0.00 | 35.39 | 3.02 |
3016 | 3362 | 5.616270 | TGTAGTCACTTGTTGAAATGCCTA | 58.384 | 37.500 | 0.00 | 0.00 | 35.39 | 3.93 |
3017 | 3363 | 4.460263 | TGTAGTCACTTGTTGAAATGCCT | 58.540 | 39.130 | 0.00 | 0.00 | 35.39 | 4.75 |
3018 | 3364 | 4.829064 | TGTAGTCACTTGTTGAAATGCC | 57.171 | 40.909 | 0.00 | 0.00 | 35.39 | 4.40 |
3019 | 3365 | 6.015504 | CGTATGTAGTCACTTGTTGAAATGC | 58.984 | 40.000 | 0.00 | 0.00 | 35.39 | 3.56 |
3020 | 3366 | 6.367695 | TCCGTATGTAGTCACTTGTTGAAATG | 59.632 | 38.462 | 0.00 | 0.00 | 35.39 | 2.32 |
3021 | 3367 | 6.460781 | TCCGTATGTAGTCACTTGTTGAAAT | 58.539 | 36.000 | 0.00 | 0.00 | 35.39 | 2.17 |
3022 | 3368 | 5.845103 | TCCGTATGTAGTCACTTGTTGAAA | 58.155 | 37.500 | 0.00 | 0.00 | 35.39 | 2.69 |
3023 | 3369 | 5.456548 | TCCGTATGTAGTCACTTGTTGAA | 57.543 | 39.130 | 0.00 | 0.00 | 35.39 | 2.69 |
3024 | 3370 | 4.617530 | GCTCCGTATGTAGTCACTTGTTGA | 60.618 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
3025 | 3371 | 3.612860 | GCTCCGTATGTAGTCACTTGTTG | 59.387 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
3026 | 3372 | 3.257375 | TGCTCCGTATGTAGTCACTTGTT | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
3027 | 3373 | 2.823747 | TGCTCCGTATGTAGTCACTTGT | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3028 | 3374 | 3.503827 | TGCTCCGTATGTAGTCACTTG | 57.496 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3029 | 3375 | 4.530710 | TTTGCTCCGTATGTAGTCACTT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
3030 | 3376 | 4.530710 | TTTTGCTCCGTATGTAGTCACT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3031 | 3377 | 4.868171 | TCATTTTGCTCCGTATGTAGTCAC | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
3032 | 3378 | 5.079689 | TCATTTTGCTCCGTATGTAGTCA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3033 | 3379 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3034 | 3380 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
3035 | 3381 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3036 | 3382 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
3037 | 3383 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
3038 | 3384 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
3039 | 3385 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
3040 | 3386 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
3041 | 3387 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
3042 | 3388 | 4.631377 | TGTAGATTCACTCATTTTGCTCCG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3043 | 3389 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
3044 | 3390 | 6.734104 | AGTGTAGATTCACTCATTTTGCTC | 57.266 | 37.500 | 0.00 | 0.00 | 44.07 | 4.26 |
3083 | 3429 | 7.997773 | ACATGACTACTACATACGGATGTAT | 57.002 | 36.000 | 20.64 | 13.02 | 45.42 | 2.29 |
3084 | 3430 | 8.907222 | TTACATGACTACTACATACGGATGTA | 57.093 | 34.615 | 19.32 | 19.32 | 44.77 | 2.29 |
3086 | 3432 | 9.692749 | ATTTTACATGACTACTACATACGGATG | 57.307 | 33.333 | 5.94 | 5.94 | 39.16 | 3.51 |
3087 | 3433 | 9.692749 | CATTTTACATGACTACTACATACGGAT | 57.307 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
3088 | 3434 | 8.689061 | ACATTTTACATGACTACTACATACGGA | 58.311 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
3089 | 3435 | 8.867112 | ACATTTTACATGACTACTACATACGG | 57.133 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
3090 | 3436 | 9.731819 | AGACATTTTACATGACTACTACATACG | 57.268 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
3117 | 3463 | 8.520351 | CCTCCGTTCCTAAATATTTGTTTTTCT | 58.480 | 33.333 | 11.05 | 0.00 | 0.00 | 2.52 |
3118 | 3464 | 7.758076 | CCCTCCGTTCCTAAATATTTGTTTTTC | 59.242 | 37.037 | 11.05 | 0.00 | 0.00 | 2.29 |
3119 | 3465 | 7.452189 | TCCCTCCGTTCCTAAATATTTGTTTTT | 59.548 | 33.333 | 11.05 | 0.00 | 0.00 | 1.94 |
3120 | 3466 | 6.949463 | TCCCTCCGTTCCTAAATATTTGTTTT | 59.051 | 34.615 | 11.05 | 0.00 | 0.00 | 2.43 |
3121 | 3467 | 6.486941 | TCCCTCCGTTCCTAAATATTTGTTT | 58.513 | 36.000 | 11.05 | 0.00 | 0.00 | 2.83 |
3122 | 3468 | 6.069705 | TCCCTCCGTTCCTAAATATTTGTT | 57.930 | 37.500 | 11.05 | 0.00 | 0.00 | 2.83 |
3123 | 3469 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
3124 | 3470 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
3125 | 3471 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
3126 | 3472 | 8.912614 | ATATACTCCCTCCGTTCCTAAATATT | 57.087 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
3127 | 3473 | 8.345306 | AGATATACTCCCTCCGTTCCTAAATAT | 58.655 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
3128 | 3474 | 7.614583 | CAGATATACTCCCTCCGTTCCTAAATA | 59.385 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
3129 | 3475 | 6.437793 | CAGATATACTCCCTCCGTTCCTAAAT | 59.562 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
3130 | 3476 | 5.773680 | CAGATATACTCCCTCCGTTCCTAAA | 59.226 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3131 | 3477 | 5.163012 | ACAGATATACTCCCTCCGTTCCTAA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3132 | 3478 | 4.353191 | ACAGATATACTCCCTCCGTTCCTA | 59.647 | 45.833 | 0.00 | 0.00 | 0.00 | 2.94 |
3133 | 3479 | 3.140519 | ACAGATATACTCCCTCCGTTCCT | 59.859 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
3134 | 3480 | 3.498334 | ACAGATATACTCCCTCCGTTCC | 58.502 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3135 | 3481 | 5.532664 | AAACAGATATACTCCCTCCGTTC | 57.467 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
3136 | 3482 | 5.671493 | CAAAACAGATATACTCCCTCCGTT | 58.329 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
3137 | 3483 | 4.443034 | GCAAAACAGATATACTCCCTCCGT | 60.443 | 45.833 | 0.00 | 0.00 | 0.00 | 4.69 |
3138 | 3484 | 4.058817 | GCAAAACAGATATACTCCCTCCG | 58.941 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
3139 | 3485 | 5.036117 | TGCAAAACAGATATACTCCCTCC | 57.964 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3140 | 3486 | 5.471456 | CCATGCAAAACAGATATACTCCCTC | 59.529 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3141 | 3487 | 5.380043 | CCATGCAAAACAGATATACTCCCT | 58.620 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
3142 | 3488 | 4.022849 | GCCATGCAAAACAGATATACTCCC | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3143 | 3489 | 4.823989 | AGCCATGCAAAACAGATATACTCC | 59.176 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3144 | 3490 | 5.333645 | CGAGCCATGCAAAACAGATATACTC | 60.334 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3145 | 3491 | 4.512944 | CGAGCCATGCAAAACAGATATACT | 59.487 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
3146 | 3492 | 4.319766 | CCGAGCCATGCAAAACAGATATAC | 60.320 | 45.833 | 0.00 | 0.00 | 0.00 | 1.47 |
3147 | 3493 | 3.814842 | CCGAGCCATGCAAAACAGATATA | 59.185 | 43.478 | 0.00 | 0.00 | 0.00 | 0.86 |
3148 | 3494 | 2.620115 | CCGAGCCATGCAAAACAGATAT | 59.380 | 45.455 | 0.00 | 0.00 | 0.00 | 1.63 |
3178 | 3524 | 2.732763 | TGCAGCAGGTTATTATGGCAA | 58.267 | 42.857 | 0.00 | 0.00 | 0.00 | 4.52 |
3179 | 3525 | 2.433662 | TGCAGCAGGTTATTATGGCA | 57.566 | 45.000 | 0.00 | 0.00 | 0.00 | 4.92 |
3180 | 3526 | 4.082571 | CCTATTGCAGCAGGTTATTATGGC | 60.083 | 45.833 | 7.37 | 0.00 | 0.00 | 4.40 |
3181 | 3527 | 4.460382 | CCCTATTGCAGCAGGTTATTATGG | 59.540 | 45.833 | 13.08 | 0.00 | 0.00 | 2.74 |
3182 | 3528 | 4.082571 | GCCCTATTGCAGCAGGTTATTATG | 60.083 | 45.833 | 13.08 | 0.08 | 0.00 | 1.90 |
3183 | 3529 | 4.082125 | GCCCTATTGCAGCAGGTTATTAT | 58.918 | 43.478 | 13.08 | 0.00 | 0.00 | 1.28 |
3233 | 3580 | 3.716872 | TCTCAGGATTTTGGATAGTCCCC | 59.283 | 47.826 | 0.00 | 0.00 | 35.03 | 4.81 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.