Multiple sequence alignment - TraesCS3A01G180700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G180700 chr3A 100.000 3289 0 0 1 3289 208454106 208457394 0.000000e+00 6074.0
1 TraesCS3A01G180700 chr3D 88.112 2490 175 61 296 2719 170929974 170932408 0.000000e+00 2846.0
2 TraesCS3A01G180700 chr3D 89.362 141 7 5 3150 3286 170932840 170932976 1.570000e-38 171.0
3 TraesCS3A01G180700 chr3D 83.146 89 7 3 1116 1204 212868911 212868991 1.270000e-09 75.0
4 TraesCS3A01G180700 chr3B 88.491 1173 61 30 296 1427 246503020 246504159 0.000000e+00 1351.0
5 TraesCS3A01G180700 chr3B 88.612 922 77 11 1435 2342 246504194 246505101 0.000000e+00 1096.0
6 TraesCS3A01G180700 chr3B 88.112 143 10 4 3150 3289 246505761 246505899 2.630000e-36 163.0
7 TraesCS3A01G180700 chr3B 97.436 39 1 0 1166 1204 259702050 259702012 2.120000e-07 67.6
8 TraesCS3A01G180700 chr4B 84.656 756 96 12 2032 2778 529353151 529352407 0.000000e+00 736.0
9 TraesCS3A01G180700 chr4B 97.159 176 3 2 2985 3158 143898149 143897974 2.480000e-76 296.0
10 TraesCS3A01G180700 chr5A 84.245 768 102 10 2020 2778 521195021 521195778 0.000000e+00 730.0
11 TraesCS3A01G180700 chr5A 84.392 756 99 13 2032 2778 649236270 649235525 0.000000e+00 725.0
12 TraesCS3A01G180700 chr5A 96.571 175 6 0 2978 3152 659145352 659145526 1.150000e-74 291.0
13 TraesCS3A01G180700 chr4A 84.314 765 97 15 2025 2778 477951557 477952309 0.000000e+00 726.0
14 TraesCS3A01G180700 chr4A 100.000 34 0 0 1171 1204 238767469 238767436 2.740000e-06 63.9
15 TraesCS3A01G180700 chr4D 84.148 757 100 12 2032 2778 300794989 300795735 0.000000e+00 715.0
16 TraesCS3A01G180700 chr1B 84.148 757 100 14 2032 2778 405392416 405391670 0.000000e+00 715.0
17 TraesCS3A01G180700 chr1B 95.000 40 2 0 1166 1205 143857983 143858022 2.740000e-06 63.9
18 TraesCS3A01G180700 chr2A 84.127 756 101 11 2032 2778 88723143 88723888 0.000000e+00 713.0
19 TraesCS3A01G180700 chr2A 97.059 170 5 0 2981 3150 709834354 709834523 1.490000e-73 287.0
20 TraesCS3A01G180700 chr6A 83.995 756 102 9 2032 2778 419484973 419485718 0.000000e+00 708.0
21 TraesCS3A01G180700 chr6A 97.674 172 4 0 2978 3149 1830024 1829853 2.480000e-76 296.0
22 TraesCS3A01G180700 chr6A 97.110 173 5 0 2978 3150 384143937 384144109 3.210000e-75 292.0
23 TraesCS3A01G180700 chr6A 97.368 38 1 0 1167 1204 155935681 155935718 7.620000e-07 65.8
24 TraesCS3A01G180700 chr6B 83.837 761 104 13 2022 2772 57750070 57749319 0.000000e+00 706.0
25 TraesCS3A01G180700 chr6B 100.000 39 0 0 1166 1204 471136077 471136115 4.550000e-09 73.1
26 TraesCS3A01G180700 chr7A 97.175 177 3 2 2983 3159 47626467 47626293 6.900000e-77 298.0
27 TraesCS3A01G180700 chr7A 97.143 175 4 1 2979 3152 630046158 630046332 8.930000e-76 294.0
28 TraesCS3A01G180700 chr7A 97.110 173 5 0 2978 3150 521961352 521961180 3.210000e-75 292.0
29 TraesCS3A01G180700 chr7A 97.436 39 1 0 1166 1204 238551311 238551273 2.120000e-07 67.6
30 TraesCS3A01G180700 chr7A 97.368 38 1 0 1167 1204 327312285 327312322 7.620000e-07 65.8
31 TraesCS3A01G180700 chr5B 94.241 191 9 2 2979 3167 706829569 706829379 1.150000e-74 291.0
32 TraesCS3A01G180700 chr2D 87.013 154 16 3 1 151 59833523 59833371 1.570000e-38 171.0
33 TraesCS3A01G180700 chr2D 84.810 79 4 3 1125 1203 291911397 291911467 4.550000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G180700 chr3A 208454106 208457394 3288 False 6074.0 6074 100.000 1 3289 1 chr3A.!!$F1 3288
1 TraesCS3A01G180700 chr3D 170929974 170932976 3002 False 1508.5 2846 88.737 296 3286 2 chr3D.!!$F2 2990
2 TraesCS3A01G180700 chr3B 246503020 246505899 2879 False 870.0 1351 88.405 296 3289 3 chr3B.!!$F1 2993
3 TraesCS3A01G180700 chr4B 529352407 529353151 744 True 736.0 736 84.656 2032 2778 1 chr4B.!!$R2 746
4 TraesCS3A01G180700 chr5A 521195021 521195778 757 False 730.0 730 84.245 2020 2778 1 chr5A.!!$F1 758
5 TraesCS3A01G180700 chr5A 649235525 649236270 745 True 725.0 725 84.392 2032 2778 1 chr5A.!!$R1 746
6 TraesCS3A01G180700 chr4A 477951557 477952309 752 False 726.0 726 84.314 2025 2778 1 chr4A.!!$F1 753
7 TraesCS3A01G180700 chr4D 300794989 300795735 746 False 715.0 715 84.148 2032 2778 1 chr4D.!!$F1 746
8 TraesCS3A01G180700 chr1B 405391670 405392416 746 True 715.0 715 84.148 2032 2778 1 chr1B.!!$R1 746
9 TraesCS3A01G180700 chr2A 88723143 88723888 745 False 713.0 713 84.127 2032 2778 1 chr2A.!!$F1 746
10 TraesCS3A01G180700 chr6A 419484973 419485718 745 False 708.0 708 83.995 2032 2778 1 chr6A.!!$F3 746
11 TraesCS3A01G180700 chr6B 57749319 57750070 751 True 706.0 706 83.837 2022 2772 1 chr6B.!!$R1 750


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.380378 GCGGCGATGCTAAATCCAAA 59.62 50.0 12.98 0.0 0.0 3.28 F
1003 1046 0.109597 GCACAAGTCAAATCGCCCAG 60.11 55.0 0.00 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1081 1124 0.766288 CAGGAATCCCCTCTCTCCCC 60.766 65.0 0.0 0.0 45.60 4.81 R
2614 2794 0.033504 GAGCGTCTGGTGTTCTCCAA 59.966 55.0 0.0 0.0 37.01 3.53 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.629523 AGAAAACCCCGGCGCGAA 62.630 61.111 12.10 0.00 0.00 4.70
26 27 4.097863 GAAAACCCCGGCGCGAAG 62.098 66.667 12.10 1.29 0.00 3.79
38 39 3.400007 GCGAAGGAGATGGCGAAC 58.600 61.111 0.00 0.00 0.00 3.95
39 40 2.517450 GCGAAGGAGATGGCGAACG 61.517 63.158 0.00 0.00 0.00 3.95
40 41 1.138883 CGAAGGAGATGGCGAACGA 59.861 57.895 0.00 0.00 0.00 3.85
41 42 0.867753 CGAAGGAGATGGCGAACGAG 60.868 60.000 0.00 0.00 0.00 4.18
42 43 0.528684 GAAGGAGATGGCGAACGAGG 60.529 60.000 0.00 0.00 0.00 4.63
43 44 0.970937 AAGGAGATGGCGAACGAGGA 60.971 55.000 0.00 0.00 0.00 3.71
44 45 1.066587 GGAGATGGCGAACGAGGAG 59.933 63.158 0.00 0.00 0.00 3.69
45 46 1.066587 GAGATGGCGAACGAGGAGG 59.933 63.158 0.00 0.00 0.00 4.30
46 47 2.107141 GATGGCGAACGAGGAGGG 59.893 66.667 0.00 0.00 0.00 4.30
47 48 3.447025 GATGGCGAACGAGGAGGGG 62.447 68.421 0.00 0.00 0.00 4.79
50 51 3.839432 GCGAACGAGGAGGGGGAG 61.839 72.222 0.00 0.00 0.00 4.30
51 52 3.839432 CGAACGAGGAGGGGGAGC 61.839 72.222 0.00 0.00 0.00 4.70
52 53 3.471806 GAACGAGGAGGGGGAGCC 61.472 72.222 0.00 0.00 0.00 4.70
79 80 3.186047 GACGGGCGTCGACATTGG 61.186 66.667 17.16 4.27 42.43 3.16
85 86 4.752879 CGTCGACATTGGCCCGGT 62.753 66.667 17.16 0.00 0.00 5.28
86 87 3.124921 GTCGACATTGGCCCGGTG 61.125 66.667 11.55 0.00 0.00 4.94
89 90 3.134127 GACATTGGCCCGGTGCTC 61.134 66.667 13.58 5.87 40.92 4.26
90 91 4.740822 ACATTGGCCCGGTGCTCC 62.741 66.667 13.58 0.00 40.92 4.70
91 92 4.431131 CATTGGCCCGGTGCTCCT 62.431 66.667 13.58 0.00 40.92 3.69
92 93 4.431131 ATTGGCCCGGTGCTCCTG 62.431 66.667 13.58 0.00 40.92 3.86
119 120 3.213402 GCGGTCGAGGAGGAGGAG 61.213 72.222 0.00 0.00 0.00 3.69
120 121 2.517402 CGGTCGAGGAGGAGGAGG 60.517 72.222 0.00 0.00 0.00 4.30
121 122 2.684735 GGTCGAGGAGGAGGAGGT 59.315 66.667 0.00 0.00 0.00 3.85
122 123 1.454295 GGTCGAGGAGGAGGAGGTC 60.454 68.421 0.00 0.00 0.00 3.85
123 124 1.820481 GTCGAGGAGGAGGAGGTCG 60.820 68.421 0.00 0.00 0.00 4.79
124 125 3.213402 CGAGGAGGAGGAGGTCGC 61.213 72.222 0.00 0.00 0.00 5.19
125 126 2.835895 GAGGAGGAGGAGGTCGCC 60.836 72.222 0.00 0.00 35.38 5.54
126 127 4.824515 AGGAGGAGGAGGTCGCCG 62.825 72.222 0.00 0.00 40.51 6.46
128 129 3.519930 GAGGAGGAGGTCGCCGTC 61.520 72.222 0.00 0.00 40.51 4.79
131 132 4.176851 GAGGAGGTCGCCGTCGTC 62.177 72.222 0.00 0.00 34.47 4.20
134 135 3.823330 GAGGTCGCCGTCGTCCAT 61.823 66.667 4.76 0.00 44.48 3.41
135 136 4.129737 AGGTCGCCGTCGTCCATG 62.130 66.667 4.76 0.00 44.48 3.66
141 142 4.838152 CCGTCGTCCATGGGCCTG 62.838 72.222 11.65 0.00 0.00 4.85
154 155 3.202001 GCCTGCGGCGATGCTAAA 61.202 61.111 12.98 0.00 39.62 1.85
155 156 2.546494 GCCTGCGGCGATGCTAAAT 61.546 57.895 12.98 0.00 39.62 1.40
156 157 1.571460 CCTGCGGCGATGCTAAATC 59.429 57.895 12.98 0.00 35.36 2.17
157 158 1.571460 CTGCGGCGATGCTAAATCC 59.429 57.895 12.98 0.00 35.36 3.01
158 159 1.153269 TGCGGCGATGCTAAATCCA 60.153 52.632 12.98 0.00 35.36 3.41
159 160 0.746204 TGCGGCGATGCTAAATCCAA 60.746 50.000 12.98 0.00 35.36 3.53
160 161 0.380378 GCGGCGATGCTAAATCCAAA 59.620 50.000 12.98 0.00 0.00 3.28
161 162 1.202245 GCGGCGATGCTAAATCCAAAA 60.202 47.619 12.98 0.00 0.00 2.44
162 163 2.733858 GCGGCGATGCTAAATCCAAAAA 60.734 45.455 12.98 0.00 0.00 1.94
226 227 6.175712 GACAAAGTTTGGCAAATGTTTTCA 57.824 33.333 16.85 0.00 38.99 2.69
227 228 6.566197 ACAAAGTTTGGCAAATGTTTTCAA 57.434 29.167 16.74 0.00 34.12 2.69
228 229 7.155655 ACAAAGTTTGGCAAATGTTTTCAAT 57.844 28.000 16.74 3.67 34.12 2.57
229 230 7.028361 ACAAAGTTTGGCAAATGTTTTCAATG 58.972 30.769 16.74 9.70 34.12 2.82
230 231 5.172460 AGTTTGGCAAATGTTTTCAATGC 57.828 34.783 16.74 0.00 42.22 3.56
231 232 4.883006 AGTTTGGCAAATGTTTTCAATGCT 59.117 33.333 16.74 0.76 42.42 3.79
232 233 5.357596 AGTTTGGCAAATGTTTTCAATGCTT 59.642 32.000 16.74 0.00 42.42 3.91
233 234 4.815040 TGGCAAATGTTTTCAATGCTTG 57.185 36.364 0.00 0.00 42.42 4.01
234 235 3.003482 TGGCAAATGTTTTCAATGCTTGC 59.997 39.130 0.00 0.00 42.42 4.01
235 236 3.003482 GGCAAATGTTTTCAATGCTTGCA 59.997 39.130 0.00 0.00 42.42 4.08
236 237 3.969981 GCAAATGTTTTCAATGCTTGCAC 59.030 39.130 0.00 0.00 40.84 4.57
237 238 4.496010 GCAAATGTTTTCAATGCTTGCACA 60.496 37.500 0.00 0.00 40.84 4.57
238 239 5.201910 CAAATGTTTTCAATGCTTGCACAG 58.798 37.500 0.00 0.00 0.00 3.66
239 240 3.523606 TGTTTTCAATGCTTGCACAGT 57.476 38.095 0.00 0.00 0.00 3.55
240 241 3.859443 TGTTTTCAATGCTTGCACAGTT 58.141 36.364 0.00 0.00 0.00 3.16
241 242 4.252073 TGTTTTCAATGCTTGCACAGTTT 58.748 34.783 0.00 0.00 0.00 2.66
242 243 4.329528 TGTTTTCAATGCTTGCACAGTTTC 59.670 37.500 0.00 0.00 0.00 2.78
243 244 3.797451 TTCAATGCTTGCACAGTTTCA 57.203 38.095 0.00 0.00 0.00 2.69
244 245 4.325028 TTCAATGCTTGCACAGTTTCAT 57.675 36.364 0.00 0.00 0.00 2.57
245 246 3.904571 TCAATGCTTGCACAGTTTCATC 58.095 40.909 0.00 0.00 0.00 2.92
246 247 3.570975 TCAATGCTTGCACAGTTTCATCT 59.429 39.130 0.00 0.00 0.00 2.90
247 248 4.038282 TCAATGCTTGCACAGTTTCATCTT 59.962 37.500 0.00 0.00 0.00 2.40
248 249 3.358707 TGCTTGCACAGTTTCATCTTG 57.641 42.857 0.00 0.00 0.00 3.02
249 250 2.950975 TGCTTGCACAGTTTCATCTTGA 59.049 40.909 0.00 0.00 0.00 3.02
250 251 3.380954 TGCTTGCACAGTTTCATCTTGAA 59.619 39.130 0.00 0.00 34.03 2.69
251 252 4.142204 TGCTTGCACAGTTTCATCTTGAAA 60.142 37.500 0.00 0.00 43.37 2.69
252 253 4.986659 GCTTGCACAGTTTCATCTTGAAAT 59.013 37.500 6.01 0.00 46.55 2.17
253 254 5.107607 GCTTGCACAGTTTCATCTTGAAATG 60.108 40.000 6.01 7.89 46.55 2.32
254 255 5.771153 TGCACAGTTTCATCTTGAAATGA 57.229 34.783 6.01 0.00 46.55 2.57
255 256 5.522456 TGCACAGTTTCATCTTGAAATGAC 58.478 37.500 6.01 0.00 46.55 3.06
256 257 5.067544 TGCACAGTTTCATCTTGAAATGACA 59.932 36.000 6.01 7.09 46.55 3.58
257 258 6.154445 GCACAGTTTCATCTTGAAATGACAT 58.846 36.000 6.01 0.00 46.55 3.06
258 259 6.643770 GCACAGTTTCATCTTGAAATGACATT 59.356 34.615 6.01 0.00 46.55 2.71
259 260 7.170320 GCACAGTTTCATCTTGAAATGACATTT 59.830 33.333 13.24 13.24 46.55 2.32
260 261 8.484799 CACAGTTTCATCTTGAAATGACATTTG 58.515 33.333 18.00 4.44 46.55 2.32
261 262 8.199449 ACAGTTTCATCTTGAAATGACATTTGT 58.801 29.630 18.00 3.14 46.55 2.83
262 263 8.484799 CAGTTTCATCTTGAAATGACATTTGTG 58.515 33.333 18.00 7.84 46.55 3.33
263 264 8.415553 AGTTTCATCTTGAAATGACATTTGTGA 58.584 29.630 18.00 12.33 46.55 3.58
264 265 9.033481 GTTTCATCTTGAAATGACATTTGTGAA 57.967 29.630 18.00 14.78 46.55 3.18
265 266 9.597170 TTTCATCTTGAAATGACATTTGTGAAA 57.403 25.926 18.00 18.47 41.02 2.69
266 267 8.806177 TCATCTTGAAATGACATTTGTGAAAG 57.194 30.769 18.00 14.26 30.76 2.62
267 268 8.415553 TCATCTTGAAATGACATTTGTGAAAGT 58.584 29.630 18.00 5.37 30.76 2.66
268 269 7.990541 TCTTGAAATGACATTTGTGAAAGTG 57.009 32.000 18.00 0.90 31.47 3.16
269 270 6.979817 TCTTGAAATGACATTTGTGAAAGTGG 59.020 34.615 18.00 0.00 31.47 4.00
270 271 6.219417 TGAAATGACATTTGTGAAAGTGGT 57.781 33.333 18.00 0.00 31.47 4.16
271 272 6.041511 TGAAATGACATTTGTGAAAGTGGTG 58.958 36.000 18.00 0.00 31.47 4.17
272 273 4.589216 ATGACATTTGTGAAAGTGGTGG 57.411 40.909 0.00 0.00 0.00 4.61
273 274 2.100584 TGACATTTGTGAAAGTGGTGGC 59.899 45.455 0.00 0.00 0.00 5.01
274 275 2.100584 GACATTTGTGAAAGTGGTGGCA 59.899 45.455 0.00 0.00 0.00 4.92
275 276 2.499289 ACATTTGTGAAAGTGGTGGCAA 59.501 40.909 0.00 0.00 0.00 4.52
276 277 3.055530 ACATTTGTGAAAGTGGTGGCAAA 60.056 39.130 0.00 0.00 0.00 3.68
277 278 3.685139 TTTGTGAAAGTGGTGGCAAAA 57.315 38.095 0.00 0.00 0.00 2.44
278 279 3.685139 TTGTGAAAGTGGTGGCAAAAA 57.315 38.095 0.00 0.00 0.00 1.94
351 352 0.975556 TGGAGCTCAGGTAATCCGCA 60.976 55.000 17.19 0.00 39.05 5.69
363 364 1.602311 AATCCGCATCCTGATTCTGC 58.398 50.000 0.00 0.00 0.00 4.26
372 373 4.534168 CATCCTGATTCTGCGCATTTTAG 58.466 43.478 12.24 6.19 0.00 1.85
385 386 3.243877 CGCATTTTAGTCGATGAGAGGTG 59.756 47.826 0.00 0.00 0.00 4.00
389 390 4.920640 TTTAGTCGATGAGAGGTGGATC 57.079 45.455 0.00 0.00 0.00 3.36
429 430 2.125106 CACCGACCAGCTAAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
431 432 1.995626 ACCGACCAGCTAAGCCCAT 60.996 57.895 0.00 0.00 0.00 4.00
488 492 7.069331 TGACAAATAATTGGGTTTCTCTGTGTT 59.931 33.333 0.00 0.00 41.01 3.32
533 538 6.199531 TGTGGCGCGATTTATTTTACTACTAG 59.800 38.462 12.10 0.00 0.00 2.57
534 539 6.199719 GTGGCGCGATTTATTTTACTACTAGT 59.800 38.462 12.10 0.00 0.00 2.57
535 540 7.379529 GTGGCGCGATTTATTTTACTACTAGTA 59.620 37.037 12.10 1.89 0.00 1.82
577 582 1.134371 AGATCCTAAGCGGGAGTTTGC 60.134 52.381 0.00 0.00 38.92 3.68
616 621 5.969435 GCTTAAATAATAAGCGGTTGGTGAC 59.031 40.000 10.73 0.00 40.19 3.67
763 776 3.308705 GGTTGACCGGACGGACCT 61.309 66.667 18.80 0.00 38.96 3.85
768 781 2.679287 ACCGGACGGACCTCTTCC 60.679 66.667 18.80 0.00 41.75 3.46
769 782 2.362632 CCGGACGGACCTCTTCCT 60.363 66.667 4.40 0.00 43.25 3.36
805 826 4.864247 GTGTATCCACATCAAACATTTGCC 59.136 41.667 0.00 0.00 41.44 4.52
807 828 5.948758 TGTATCCACATCAAACATTTGCCTA 59.051 36.000 0.00 0.00 38.05 3.93
808 829 4.782019 TCCACATCAAACATTTGCCTAC 57.218 40.909 0.00 0.00 38.05 3.18
816 848 4.800993 TCAAACATTTGCCTACGTTTGTTG 59.199 37.500 12.12 0.00 45.29 3.33
822 854 3.015516 CCTACGTTTGTTGGCACCT 57.984 52.632 0.00 0.00 34.25 4.00
823 855 2.172851 CCTACGTTTGTTGGCACCTA 57.827 50.000 0.00 0.00 34.25 3.08
824 856 1.802365 CCTACGTTTGTTGGCACCTAC 59.198 52.381 0.00 0.00 34.25 3.18
825 857 2.549349 CCTACGTTTGTTGGCACCTACT 60.549 50.000 0.00 0.00 34.25 2.57
930 971 3.917760 CGGATCCCCCACTCGCTC 61.918 72.222 6.06 0.00 34.14 5.03
973 1016 2.426024 AGCCGACGCTCTCTGTATAAAA 59.574 45.455 0.00 0.00 43.95 1.52
1003 1046 0.109597 GCACAAGTCAAATCGCCCAG 60.110 55.000 0.00 0.00 0.00 4.45
1154 1226 2.253452 GGCAGCAGCAACGACAAG 59.747 61.111 2.65 0.00 44.61 3.16
1156 1228 2.546494 GCAGCAGCAACGACAAGGT 61.546 57.895 0.00 0.00 41.58 3.50
1296 1368 1.529865 GGTGCGACTGTTTGTCTTACC 59.470 52.381 0.00 0.00 43.25 2.85
1427 1499 3.435026 CCATCCCCACCGATTGATTAGTT 60.435 47.826 0.00 0.00 0.00 2.24
1429 1501 3.616219 TCCCCACCGATTGATTAGTTTG 58.384 45.455 0.00 0.00 0.00 2.93
1430 1502 3.009695 TCCCCACCGATTGATTAGTTTGT 59.990 43.478 0.00 0.00 0.00 2.83
1431 1503 3.761752 CCCCACCGATTGATTAGTTTGTT 59.238 43.478 0.00 0.00 0.00 2.83
1434 1506 5.065988 CCCACCGATTGATTAGTTTGTTAGG 59.934 44.000 0.00 0.00 0.00 2.69
1435 1507 5.646360 CCACCGATTGATTAGTTTGTTAGGT 59.354 40.000 0.00 0.00 0.00 3.08
1436 1508 6.819649 CCACCGATTGATTAGTTTGTTAGGTA 59.180 38.462 0.00 0.00 0.00 3.08
1437 1509 7.201582 CCACCGATTGATTAGTTTGTTAGGTAC 60.202 40.741 0.00 0.00 0.00 3.34
1458 1556 6.694844 GGTACTACTTGCCGTTTTAGATAGTC 59.305 42.308 0.00 0.00 0.00 2.59
1511 1609 6.070656 AGATCAACCTTTTCTGTTTCATCCA 58.929 36.000 0.00 0.00 0.00 3.41
1539 1637 2.686835 GCAGGAGGAGGAGGCAGT 60.687 66.667 0.00 0.00 0.00 4.40
1575 1673 4.803426 CACCGTGGAGGAGCGAGC 62.803 72.222 0.00 0.00 45.00 5.03
1757 1863 0.805322 CTGCTCGTCACCAGATCTGC 60.805 60.000 17.76 3.80 0.00 4.26
1774 1883 6.708502 CAGATCTGCTACTAGTTACAGCTAGA 59.291 42.308 10.38 15.09 40.54 2.43
1893 2002 4.979204 TCGCTTTCCGACGTTGAT 57.021 50.000 3.74 0.00 41.89 2.57
1894 2003 3.204505 TCGCTTTCCGACGTTGATT 57.795 47.368 3.74 0.00 41.89 2.57
1930 2059 2.099756 ACTGCTTCGCTTTCTTTGCTTT 59.900 40.909 0.00 0.00 0.00 3.51
1996 2130 4.136250 GGCAAGCCGTATGGTACC 57.864 61.111 4.43 4.43 37.67 3.34
2013 2147 2.413310 ACCTGTGTTCGTCCTTGTTT 57.587 45.000 0.00 0.00 0.00 2.83
2019 2153 1.064357 TGTTCGTCCTTGTTTTTCGCC 59.936 47.619 0.00 0.00 0.00 5.54
2039 2174 5.236655 GCCTGTTTATGGCTAGTTCTTTC 57.763 43.478 0.00 0.00 46.38 2.62
2099 2234 4.644234 TCTTTCACAATCTGCTTTCCACAA 59.356 37.500 0.00 0.00 0.00 3.33
2107 2242 2.297033 TCTGCTTTCCACAAAATCTGCC 59.703 45.455 0.00 0.00 0.00 4.85
2111 2246 1.974265 TTCCACAAAATCTGCCGTCA 58.026 45.000 0.00 0.00 0.00 4.35
2123 2258 4.330944 TCTGCCGTCAAGTTCTTTTCTA 57.669 40.909 0.00 0.00 0.00 2.10
2145 2280 9.706691 TTCTAAGATTCGAGTTTAAGATTGTGT 57.293 29.630 0.00 0.00 0.00 3.72
2155 2290 8.708742 CGAGTTTAAGATTGTGTATTCAGTTGA 58.291 33.333 0.00 0.00 0.00 3.18
2160 2295 4.627467 AGATTGTGTATTCAGTTGAGCGTC 59.373 41.667 0.00 0.00 0.00 5.19
2176 2313 3.499048 AGCGTCGAAATGTGTGTAGTAG 58.501 45.455 0.00 0.00 0.00 2.57
2177 2314 3.057736 AGCGTCGAAATGTGTGTAGTAGT 60.058 43.478 0.00 0.00 0.00 2.73
2184 2321 8.019669 GTCGAAATGTGTGTAGTAGTCTTAGAA 58.980 37.037 0.00 0.00 0.00 2.10
2191 2328 9.909644 TGTGTGTAGTAGTCTTAGAAAGAAATC 57.090 33.333 0.00 0.00 39.67 2.17
2206 2344 8.733857 AGAAAGAAATCGTTTGATGAATTGTC 57.266 30.769 0.00 0.00 34.24 3.18
2408 2582 0.380378 GCGTGTTGTGTTCATGGTGT 59.620 50.000 0.00 0.00 0.00 4.16
2410 2584 1.332816 CGTGTTGTGTTCATGGTGTCG 60.333 52.381 0.00 0.00 0.00 4.35
2427 2601 2.825532 TGTCGTCATCATCTTCTGGTGA 59.174 45.455 0.00 0.00 42.83 4.02
2450 2624 2.092646 AGAGTGTTGGCACCTGTAAACA 60.093 45.455 0.00 0.00 46.35 2.83
2522 2696 3.754955 TCACGTAACTTGCTATCACGAG 58.245 45.455 0.00 0.00 36.51 4.18
2582 2756 4.165372 TCTTTTGGGTCTCCAGTTTGTACT 59.835 41.667 0.00 0.00 45.04 2.73
2614 2794 5.413499 CCTTCAAGAATTCGCCATTTCATT 58.587 37.500 0.00 0.00 0.00 2.57
2616 2796 6.183360 CCTTCAAGAATTCGCCATTTCATTTG 60.183 38.462 0.00 0.00 0.00 2.32
2627 2807 4.813027 CCATTTCATTTGGAGAACACCAG 58.187 43.478 0.00 0.00 41.19 4.00
2645 2825 1.651138 CAGACGCTCTTTCGATGACAC 59.349 52.381 0.00 0.00 0.00 3.67
2650 2830 2.329379 GCTCTTTCGATGACACTTCGT 58.671 47.619 0.00 0.00 37.82 3.85
2722 3064 7.552687 GGATGTTGTTGGAAATCTAGTACATGA 59.447 37.037 0.00 0.00 0.00 3.07
2758 3101 4.295201 TGTATGGTGCTAGTATCCAACCT 58.705 43.478 6.31 0.00 34.80 3.50
2780 3123 0.838554 TTTGGATGTCCGGAGTCCCA 60.839 55.000 25.58 19.70 39.43 4.37
2803 3146 3.137385 TGGCAGATGGCATAGGGGC 62.137 63.158 4.78 6.04 46.12 5.80
2828 3171 4.838152 GAAGATGGGCTGCGGCGA 62.838 66.667 12.98 0.00 39.81 5.54
2831 3174 4.838152 GATGGGCTGCGGCGAGAA 62.838 66.667 12.98 0.00 39.81 2.87
2876 3219 3.753434 CTGGCAGCGACGAGGTCT 61.753 66.667 0.00 0.00 0.00 3.85
2878 3221 4.803426 GGCAGCGACGAGGTCTGG 62.803 72.222 0.00 0.00 0.00 3.86
2941 3287 0.318441 CTGGTCGAGTTGGAGCTCAA 59.682 55.000 17.19 0.00 35.33 3.02
2951 3297 4.264543 GTTGGAGCTCAACGAACATATG 57.735 45.455 17.19 0.00 45.10 1.78
2973 3319 2.517875 ATTGAGGCCCATGCGCTC 60.518 61.111 9.73 0.00 38.85 5.03
2984 3330 1.789464 CCATGCGCTCTCGTTATCTTC 59.211 52.381 9.73 0.00 38.14 2.87
2986 3332 3.304726 CCATGCGCTCTCGTTATCTTCTA 60.305 47.826 9.73 0.00 38.14 2.10
2987 3333 3.335786 TGCGCTCTCGTTATCTTCTAC 57.664 47.619 9.73 0.00 38.14 2.59
2988 3334 2.943690 TGCGCTCTCGTTATCTTCTACT 59.056 45.455 9.73 0.00 38.14 2.57
2989 3335 3.002451 TGCGCTCTCGTTATCTTCTACTC 59.998 47.826 9.73 0.00 38.14 2.59
2990 3336 3.607542 GCGCTCTCGTTATCTTCTACTCC 60.608 52.174 0.00 0.00 38.14 3.85
2991 3337 3.058777 CGCTCTCGTTATCTTCTACTCCC 60.059 52.174 0.00 0.00 0.00 4.30
2992 3338 4.139038 GCTCTCGTTATCTTCTACTCCCT 58.861 47.826 0.00 0.00 0.00 4.20
2993 3339 4.214758 GCTCTCGTTATCTTCTACTCCCTC 59.785 50.000 0.00 0.00 0.00 4.30
2994 3340 4.716794 TCTCGTTATCTTCTACTCCCTCC 58.283 47.826 0.00 0.00 0.00 4.30
2995 3341 3.474600 TCGTTATCTTCTACTCCCTCCG 58.525 50.000 0.00 0.00 0.00 4.63
2996 3342 3.118112 TCGTTATCTTCTACTCCCTCCGT 60.118 47.826 0.00 0.00 0.00 4.69
2997 3343 3.631227 CGTTATCTTCTACTCCCTCCGTT 59.369 47.826 0.00 0.00 0.00 4.44
2998 3344 4.261114 CGTTATCTTCTACTCCCTCCGTTC 60.261 50.000 0.00 0.00 0.00 3.95
2999 3345 2.140839 TCTTCTACTCCCTCCGTTCC 57.859 55.000 0.00 0.00 0.00 3.62
3000 3346 1.639628 TCTTCTACTCCCTCCGTTCCT 59.360 52.381 0.00 0.00 0.00 3.36
3001 3347 2.848694 TCTTCTACTCCCTCCGTTCCTA 59.151 50.000 0.00 0.00 0.00 2.94
3002 3348 3.267812 TCTTCTACTCCCTCCGTTCCTAA 59.732 47.826 0.00 0.00 0.00 2.69
3003 3349 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3004 3350 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3005 3351 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3006 3352 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
3007 3353 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3008 3354 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3009 3355 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3010 3356 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3011 3357 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3012 3358 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3013 3359 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3014 3360 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3015 3361 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3016 3362 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3017 3363 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3018 3364 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3019 3365 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3020 3366 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3021 3367 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3022 3368 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3023 3369 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3024 3370 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3026 3372 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3027 3373 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3028 3374 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
3029 3375 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
3030 3376 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
3031 3377 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
3032 3378 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
3033 3379 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
3034 3380 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
3035 3381 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
3036 3382 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
3037 3383 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
3038 3384 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
3039 3385 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
3040 3386 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
3041 3387 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
3042 3388 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
3043 3389 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
3044 3390 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
3045 3391 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3046 3392 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3047 3393 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3048 3394 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3049 3395 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3050 3396 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3051 3397 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3052 3398 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3053 3399 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3054 3400 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3055 3401 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3056 3402 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3057 3403 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3058 3404 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3059 3405 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3060 3406 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3061 3407 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3062 3408 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3063 3409 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3064 3410 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3065 3411 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3066 3412 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3109 3455 7.812690 ACATCCGTATGTAGTAGTCATGTAA 57.187 36.000 0.00 0.00 44.66 2.41
3110 3456 8.229253 ACATCCGTATGTAGTAGTCATGTAAA 57.771 34.615 0.00 0.00 44.66 2.01
3111 3457 8.689061 ACATCCGTATGTAGTAGTCATGTAAAA 58.311 33.333 0.00 0.00 44.66 1.52
3112 3458 9.692749 CATCCGTATGTAGTAGTCATGTAAAAT 57.307 33.333 0.00 0.00 0.00 1.82
3113 3459 9.692749 ATCCGTATGTAGTAGTCATGTAAAATG 57.307 33.333 0.00 0.00 0.00 2.32
3114 3460 8.689061 TCCGTATGTAGTAGTCATGTAAAATGT 58.311 33.333 0.00 0.00 0.00 2.71
3115 3461 8.965172 CCGTATGTAGTAGTCATGTAAAATGTC 58.035 37.037 0.00 0.00 0.00 3.06
3116 3462 9.731819 CGTATGTAGTAGTCATGTAAAATGTCT 57.268 33.333 0.00 0.00 0.00 3.41
3143 3489 8.520351 AGAAAAACAAATATTTAGGAACGGAGG 58.480 33.333 0.00 0.00 0.00 4.30
3144 3490 6.769134 AAACAAATATTTAGGAACGGAGGG 57.231 37.500 0.00 0.00 0.00 4.30
3145 3491 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
3146 3492 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3147 3493 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3148 3494 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3178 3524 0.527565 GCATGGCTCGGTGACATTTT 59.472 50.000 0.00 0.00 43.01 1.82
3179 3525 1.067635 GCATGGCTCGGTGACATTTTT 60.068 47.619 0.00 0.00 43.01 1.94
3180 3526 2.598589 CATGGCTCGGTGACATTTTTG 58.401 47.619 0.00 0.00 43.01 2.44
3181 3527 0.313672 TGGCTCGGTGACATTTTTGC 59.686 50.000 0.00 0.00 0.00 3.68
3182 3528 0.388520 GGCTCGGTGACATTTTTGCC 60.389 55.000 0.00 0.00 0.00 4.52
3183 3529 0.313672 GCTCGGTGACATTTTTGCCA 59.686 50.000 0.00 0.00 0.00 4.92
3213 3560 1.661341 CTGCAATAGGGCACTCTGTC 58.339 55.000 0.00 0.00 39.25 3.51
3233 3580 7.035004 TCTGTCAACTCCAAACATTTTCTTTG 58.965 34.615 0.00 0.00 0.00 2.77
3243 3592 6.398095 CAAACATTTTCTTTGGGGACTATCC 58.602 40.000 0.00 0.00 35.23 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.629523 TTCGCGCCGGGGTTTTCT 62.630 61.111 20.83 0.00 0.00 2.52
9 10 4.097863 CTTCGCGCCGGGGTTTTC 62.098 66.667 20.83 1.85 0.00 2.29
19 20 4.873129 TCGCCATCTCCTTCGCGC 62.873 66.667 0.00 0.00 44.12 6.86
20 21 2.202743 TTCGCCATCTCCTTCGCG 60.203 61.111 0.00 0.00 45.76 5.87
21 22 2.517450 CGTTCGCCATCTCCTTCGC 61.517 63.158 0.00 0.00 0.00 4.70
22 23 0.867753 CTCGTTCGCCATCTCCTTCG 60.868 60.000 0.00 0.00 0.00 3.79
23 24 0.528684 CCTCGTTCGCCATCTCCTTC 60.529 60.000 0.00 0.00 0.00 3.46
24 25 0.970937 TCCTCGTTCGCCATCTCCTT 60.971 55.000 0.00 0.00 0.00 3.36
25 26 1.379977 TCCTCGTTCGCCATCTCCT 60.380 57.895 0.00 0.00 0.00 3.69
26 27 1.066587 CTCCTCGTTCGCCATCTCC 59.933 63.158 0.00 0.00 0.00 3.71
27 28 1.066587 CCTCCTCGTTCGCCATCTC 59.933 63.158 0.00 0.00 0.00 2.75
28 29 2.427245 CCCTCCTCGTTCGCCATCT 61.427 63.158 0.00 0.00 0.00 2.90
29 30 2.107141 CCCTCCTCGTTCGCCATC 59.893 66.667 0.00 0.00 0.00 3.51
30 31 3.470888 CCCCTCCTCGTTCGCCAT 61.471 66.667 0.00 0.00 0.00 4.40
33 34 3.839432 CTCCCCCTCCTCGTTCGC 61.839 72.222 0.00 0.00 0.00 4.70
34 35 3.839432 GCTCCCCCTCCTCGTTCG 61.839 72.222 0.00 0.00 0.00 3.95
35 36 3.471806 GGCTCCCCCTCCTCGTTC 61.472 72.222 0.00 0.00 0.00 3.95
62 63 3.186047 CCAATGTCGACGCCCGTC 61.186 66.667 11.62 10.57 41.40 4.79
68 69 4.752879 ACCGGGCCAATGTCGACG 62.753 66.667 11.62 0.00 0.00 5.12
69 70 3.124921 CACCGGGCCAATGTCGAC 61.125 66.667 9.11 9.11 0.00 4.20
72 73 3.134127 GAGCACCGGGCCAATGTC 61.134 66.667 6.32 0.00 46.50 3.06
73 74 4.740822 GGAGCACCGGGCCAATGT 62.741 66.667 6.32 0.00 46.50 2.71
74 75 4.431131 AGGAGCACCGGGCCAATG 62.431 66.667 6.32 1.25 46.50 2.82
75 76 4.431131 CAGGAGCACCGGGCCAAT 62.431 66.667 6.32 0.00 46.50 3.16
102 103 3.213402 CTCCTCCTCCTCGACCGC 61.213 72.222 0.00 0.00 0.00 5.68
103 104 2.517402 CCTCCTCCTCCTCGACCG 60.517 72.222 0.00 0.00 0.00 4.79
104 105 1.454295 GACCTCCTCCTCCTCGACC 60.454 68.421 0.00 0.00 0.00 4.79
105 106 1.820481 CGACCTCCTCCTCCTCGAC 60.820 68.421 0.00 0.00 0.00 4.20
106 107 2.590645 CGACCTCCTCCTCCTCGA 59.409 66.667 0.00 0.00 0.00 4.04
107 108 3.213402 GCGACCTCCTCCTCCTCG 61.213 72.222 0.00 0.00 0.00 4.63
108 109 2.835895 GGCGACCTCCTCCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
109 110 4.824515 CGGCGACCTCCTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
111 112 3.519930 GACGGCGACCTCCTCCTC 61.520 72.222 16.62 0.00 0.00 3.71
114 115 4.176851 GACGACGGCGACCTCCTC 62.177 72.222 22.49 0.00 41.64 3.71
124 125 4.838152 CAGGCCCATGGACGACGG 62.838 72.222 15.22 0.00 34.63 4.79
139 140 1.159713 TGGATTTAGCATCGCCGCAG 61.160 55.000 0.00 0.00 0.00 5.18
140 141 0.746204 TTGGATTTAGCATCGCCGCA 60.746 50.000 0.00 0.00 0.00 5.69
141 142 0.380378 TTTGGATTTAGCATCGCCGC 59.620 50.000 0.00 0.00 0.00 6.53
142 143 2.842208 TTTTGGATTTAGCATCGCCG 57.158 45.000 0.00 0.00 0.00 6.46
195 196 3.995199 TGCCAAACTTTGTCAACAACAA 58.005 36.364 0.00 0.00 46.11 2.83
196 197 3.667497 TGCCAAACTTTGTCAACAACA 57.333 38.095 0.00 0.00 35.28 3.33
197 198 4.999751 TTTGCCAAACTTTGTCAACAAC 57.000 36.364 0.00 0.00 35.28 3.32
198 199 4.999950 ACATTTGCCAAACTTTGTCAACAA 59.000 33.333 0.00 0.00 0.00 2.83
199 200 4.573900 ACATTTGCCAAACTTTGTCAACA 58.426 34.783 0.00 0.00 0.00 3.33
200 201 5.544136 AACATTTGCCAAACTTTGTCAAC 57.456 34.783 0.00 0.00 0.00 3.18
201 202 6.205464 TGAAAACATTTGCCAAACTTTGTCAA 59.795 30.769 0.00 0.00 0.00 3.18
202 203 5.702670 TGAAAACATTTGCCAAACTTTGTCA 59.297 32.000 0.00 0.00 0.00 3.58
203 204 6.175712 TGAAAACATTTGCCAAACTTTGTC 57.824 33.333 0.00 0.00 0.00 3.18
204 205 6.566197 TTGAAAACATTTGCCAAACTTTGT 57.434 29.167 0.00 0.00 0.00 2.83
205 206 6.020520 GCATTGAAAACATTTGCCAAACTTTG 60.021 34.615 0.00 0.00 0.00 2.77
206 207 6.035217 GCATTGAAAACATTTGCCAAACTTT 58.965 32.000 0.00 0.00 0.00 2.66
207 208 5.357596 AGCATTGAAAACATTTGCCAAACTT 59.642 32.000 0.00 0.00 33.85 2.66
208 209 4.883006 AGCATTGAAAACATTTGCCAAACT 59.117 33.333 0.00 0.00 33.85 2.66
209 210 5.172460 AGCATTGAAAACATTTGCCAAAC 57.828 34.783 0.00 0.00 33.85 2.93
210 211 5.831702 AAGCATTGAAAACATTTGCCAAA 57.168 30.435 0.00 0.00 33.85 3.28
224 225 9.500326 TTCAAGATGAAACTGTGCAAGCATTGA 62.500 37.037 0.00 0.00 40.23 2.57
225 226 7.445155 TTCAAGATGAAACTGTGCAAGCATTG 61.445 38.462 0.00 0.00 40.56 2.82
226 227 4.038282 TCAAGATGAAACTGTGCAAGCATT 59.962 37.500 0.00 0.00 0.00 3.56
227 228 3.570975 TCAAGATGAAACTGTGCAAGCAT 59.429 39.130 0.00 0.00 0.00 3.79
228 229 2.950975 TCAAGATGAAACTGTGCAAGCA 59.049 40.909 0.00 0.00 0.00 3.91
229 230 3.631145 TCAAGATGAAACTGTGCAAGC 57.369 42.857 0.00 0.00 0.00 4.01
240 241 9.251792 CTTTCACAAATGTCATTTCAAGATGAA 57.748 29.630 7.87 9.92 37.75 2.57
241 242 8.415553 ACTTTCACAAATGTCATTTCAAGATGA 58.584 29.630 7.87 5.11 33.81 2.92
242 243 8.484799 CACTTTCACAAATGTCATTTCAAGATG 58.515 33.333 7.87 0.00 0.00 2.90
243 244 7.654520 CCACTTTCACAAATGTCATTTCAAGAT 59.345 33.333 7.87 0.00 0.00 2.40
244 245 6.979817 CCACTTTCACAAATGTCATTTCAAGA 59.020 34.615 7.87 4.20 0.00 3.02
245 246 6.757947 ACCACTTTCACAAATGTCATTTCAAG 59.242 34.615 7.87 10.03 0.00 3.02
246 247 6.534436 CACCACTTTCACAAATGTCATTTCAA 59.466 34.615 7.87 0.00 0.00 2.69
247 248 6.041511 CACCACTTTCACAAATGTCATTTCA 58.958 36.000 7.87 0.00 0.00 2.69
248 249 5.463061 CCACCACTTTCACAAATGTCATTTC 59.537 40.000 7.87 0.00 0.00 2.17
249 250 5.358922 CCACCACTTTCACAAATGTCATTT 58.641 37.500 4.91 4.91 0.00 2.32
250 251 4.740334 GCCACCACTTTCACAAATGTCATT 60.740 41.667 0.00 0.00 0.00 2.57
251 252 3.243839 GCCACCACTTTCACAAATGTCAT 60.244 43.478 0.00 0.00 0.00 3.06
252 253 2.100584 GCCACCACTTTCACAAATGTCA 59.899 45.455 0.00 0.00 0.00 3.58
253 254 2.100584 TGCCACCACTTTCACAAATGTC 59.899 45.455 0.00 0.00 0.00 3.06
254 255 2.106566 TGCCACCACTTTCACAAATGT 58.893 42.857 0.00 0.00 0.00 2.71
255 256 2.886862 TGCCACCACTTTCACAAATG 57.113 45.000 0.00 0.00 0.00 2.32
256 257 3.902881 TTTGCCACCACTTTCACAAAT 57.097 38.095 0.00 0.00 0.00 2.32
257 258 3.685139 TTTTGCCACCACTTTCACAAA 57.315 38.095 0.00 0.00 0.00 2.83
258 259 3.685139 TTTTTGCCACCACTTTCACAA 57.315 38.095 0.00 0.00 0.00 3.33
310 311 3.502211 AGCGGATGAACAGTAAAAACTGG 59.498 43.478 10.08 0.00 41.76 4.00
314 315 3.745799 TCCAGCGGATGAACAGTAAAAA 58.254 40.909 0.00 0.00 0.00 1.94
351 352 4.202441 ACTAAAATGCGCAGAATCAGGAT 58.798 39.130 18.32 0.00 0.00 3.24
363 364 3.243877 CACCTCTCATCGACTAAAATGCG 59.756 47.826 0.00 0.00 0.00 4.73
372 373 0.312416 CCGATCCACCTCTCATCGAC 59.688 60.000 2.20 0.00 41.61 4.20
385 386 2.846371 GGCTGTCATATGCCGATCC 58.154 57.895 0.00 0.00 39.71 3.36
429 430 3.785486 TCGAGGTTTGTCTCATGCTATG 58.215 45.455 0.00 0.00 33.59 2.23
431 432 3.953712 TTCGAGGTTTGTCTCATGCTA 57.046 42.857 0.00 0.00 33.59 3.49
488 492 2.126882 AGCAATGGGGTACTGCAGATA 58.873 47.619 23.35 6.31 38.58 1.98
568 573 3.483808 TGAAAAATTGGGCAAACTCCC 57.516 42.857 0.00 0.00 46.73 4.30
616 621 0.545071 AAGCAAAACCTGGGATGGGG 60.545 55.000 0.00 0.00 0.00 4.96
763 776 1.760613 ACTGTTCACACGGAAGGAAGA 59.239 47.619 0.00 0.00 35.82 2.87
768 781 2.993899 GGATACACTGTTCACACGGAAG 59.006 50.000 0.00 0.00 35.82 3.46
769 782 2.365941 TGGATACACTGTTCACACGGAA 59.634 45.455 0.00 0.00 46.17 4.30
805 826 2.735134 GAGTAGGTGCCAACAAACGTAG 59.265 50.000 0.00 0.00 0.00 3.51
807 828 1.140252 AGAGTAGGTGCCAACAAACGT 59.860 47.619 0.00 0.00 0.00 3.99
808 829 1.878953 AGAGTAGGTGCCAACAAACG 58.121 50.000 0.00 0.00 0.00 3.60
816 848 4.703093 GTCTGGATAGATAGAGTAGGTGCC 59.297 50.000 0.00 0.00 34.94 5.01
821 853 4.839121 AGCCGTCTGGATAGATAGAGTAG 58.161 47.826 0.00 0.00 37.49 2.57
822 854 4.532916 AGAGCCGTCTGGATAGATAGAGTA 59.467 45.833 0.00 0.00 37.49 2.59
823 855 3.329520 AGAGCCGTCTGGATAGATAGAGT 59.670 47.826 0.00 0.00 37.49 3.24
824 856 3.950397 AGAGCCGTCTGGATAGATAGAG 58.050 50.000 0.00 0.00 37.49 2.43
825 857 4.374689 AAGAGCCGTCTGGATAGATAGA 57.625 45.455 0.00 0.00 37.49 1.98
973 1016 2.901840 CTTGTGCACAGTGGCCGT 60.902 61.111 20.59 0.00 0.00 5.68
1003 1046 1.172175 CTTTGCTTGGCTTCTCCTCC 58.828 55.000 0.00 0.00 35.26 4.30
1081 1124 0.766288 CAGGAATCCCCTCTCTCCCC 60.766 65.000 0.00 0.00 45.60 4.81
1249 1321 2.297597 AGAACAAGAAGAGAGACGGGTG 59.702 50.000 0.00 0.00 0.00 4.61
1427 1499 4.605640 AACGGCAAGTAGTACCTAACAA 57.394 40.909 0.00 0.00 0.00 2.83
1429 1501 6.389906 TCTAAAACGGCAAGTAGTACCTAAC 58.610 40.000 0.00 0.00 0.00 2.34
1430 1502 6.588719 TCTAAAACGGCAAGTAGTACCTAA 57.411 37.500 0.00 0.00 0.00 2.69
1431 1503 6.780457 ATCTAAAACGGCAAGTAGTACCTA 57.220 37.500 0.00 0.00 0.00 3.08
1434 1506 6.413235 CGACTATCTAAAACGGCAAGTAGTAC 59.587 42.308 0.00 0.00 0.00 2.73
1435 1507 6.489675 CGACTATCTAAAACGGCAAGTAGTA 58.510 40.000 0.00 0.00 0.00 1.82
1436 1508 5.338365 CGACTATCTAAAACGGCAAGTAGT 58.662 41.667 0.00 0.00 0.00 2.73
1437 1509 4.206609 GCGACTATCTAAAACGGCAAGTAG 59.793 45.833 0.00 0.00 0.00 2.57
1480 1578 4.349342 ACAGAAAAGGTTGATCTCCACTCT 59.651 41.667 9.47 5.67 0.00 3.24
1511 1609 5.215069 CTCCTCCTCCTGCATATATACCAT 58.785 45.833 0.00 0.00 0.00 3.55
1734 1840 2.236223 ATCTGGTGACGAGCAGCTGG 62.236 60.000 17.12 0.00 45.71 4.85
1757 1863 7.133513 CGAACCAATCTAGCTGTAACTAGTAG 58.866 42.308 0.00 0.00 40.50 2.57
1996 2130 3.350912 CGAAAAACAAGGACGAACACAG 58.649 45.455 0.00 0.00 0.00 3.66
2019 2153 4.640647 GGGGAAAGAACTAGCCATAAACAG 59.359 45.833 0.00 0.00 0.00 3.16
2030 2164 3.076350 TCCTGCGGGGAAAGAACTA 57.924 52.632 12.87 0.00 41.91 2.24
2067 2202 8.862550 AAGCAGATTGTGAAAGAACTTTTTAG 57.137 30.769 1.33 0.00 32.11 1.85
2069 2204 7.278646 GGAAAGCAGATTGTGAAAGAACTTTTT 59.721 33.333 1.33 0.00 32.11 1.94
2074 2209 4.978580 GTGGAAAGCAGATTGTGAAAGAAC 59.021 41.667 0.00 0.00 0.00 3.01
2099 2234 4.580580 AGAAAAGAACTTGACGGCAGATTT 59.419 37.500 0.00 0.00 0.00 2.17
2107 2242 7.115095 ACTCGAATCTTAGAAAAGAACTTGACG 59.885 37.037 0.00 0.00 44.75 4.35
2145 2280 4.091365 CACATTTCGACGCTCAACTGAATA 59.909 41.667 0.00 0.00 0.00 1.75
2155 2290 2.433868 ACTACACACATTTCGACGCT 57.566 45.000 0.00 0.00 0.00 5.07
2160 2295 8.738199 TTTCTAAGACTACTACACACATTTCG 57.262 34.615 0.00 0.00 0.00 3.46
2184 2321 7.920151 TGTTGACAATTCATCAAACGATTTCTT 59.080 29.630 3.72 0.00 37.80 2.52
2191 2328 6.810888 AAAGTGTTGACAATTCATCAAACG 57.189 33.333 3.72 0.00 37.80 3.60
2238 2376 7.064134 TCGTAAATCACTTTCGTGCTCATATTT 59.936 33.333 0.00 0.00 40.99 1.40
2408 2582 5.133221 TCTATCACCAGAAGATGATGACGA 58.867 41.667 0.00 0.00 36.26 4.20
2410 2584 6.183360 ACACTCTATCACCAGAAGATGATGAC 60.183 42.308 0.00 0.00 36.26 3.06
2427 2601 4.202419 TGTTTACAGGTGCCAACACTCTAT 60.202 41.667 0.00 0.00 46.57 1.98
2474 2648 5.464389 AGCATTTTGACAAGTTTGAGAATGC 59.536 36.000 17.70 17.70 0.00 3.56
2479 2653 6.143438 GTGATGAGCATTTTGACAAGTTTGAG 59.857 38.462 0.00 0.00 0.00 3.02
2614 2794 0.033504 GAGCGTCTGGTGTTCTCCAA 59.966 55.000 0.00 0.00 37.01 3.53
2616 2796 0.318762 AAGAGCGTCTGGTGTTCTCC 59.681 55.000 0.00 0.00 0.00 3.71
2650 2830 7.390440 ACATTCAACCATCGTCATTCTTCTTTA 59.610 33.333 0.00 0.00 0.00 1.85
2722 3064 3.882888 CACCATACAAAGGGCAACGATAT 59.117 43.478 0.00 0.00 37.60 1.63
2758 3101 1.271163 GGACTCCGGACATCCAAACAA 60.271 52.381 20.76 0.00 35.14 2.83
2780 3123 2.671370 CTATGCCATCTGCCACCGCT 62.671 60.000 0.00 0.00 40.16 5.52
2803 3146 2.897350 GCCCATCTTCCTTCGCCG 60.897 66.667 0.00 0.00 0.00 6.46
2808 3151 2.273449 CCGCAGCCCATCTTCCTT 59.727 61.111 0.00 0.00 0.00 3.36
2828 3171 1.599047 CGCCACTGGTCCAGATTCT 59.401 57.895 26.18 0.00 35.18 2.40
2831 3174 4.101448 GCCGCCACTGGTCCAGAT 62.101 66.667 26.18 7.01 35.18 2.90
2916 3262 2.046892 CAACTCGACCAGGGCCAG 60.047 66.667 6.18 0.00 0.00 4.85
2941 3287 2.575532 CTCAATGCCCCATATGTTCGT 58.424 47.619 1.24 0.00 0.00 3.85
2946 3292 2.662309 GGCCTCAATGCCCCATATG 58.338 57.895 0.00 0.00 46.11 1.78
2973 3319 3.499157 CGGAGGGAGTAGAAGATAACGAG 59.501 52.174 0.00 0.00 0.00 4.18
2984 3330 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
2986 3332 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
2987 3333 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2988 3334 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2989 3335 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2990 3336 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2991 3337 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2992 3338 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2993 3339 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
2994 3340 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
2995 3341 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
2996 3342 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
2997 3343 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
2998 3344 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3000 3346 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3001 3347 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3002 3348 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
3003 3349 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
3004 3350 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
3005 3351 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
3006 3352 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
3007 3353 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
3008 3354 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
3009 3355 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
3010 3356 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
3011 3357 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
3012 3358 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
3013 3359 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
3014 3360 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
3015 3361 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
3016 3362 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
3017 3363 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
3018 3364 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
3019 3365 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
3020 3366 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
3021 3367 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3022 3368 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3023 3369 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3024 3370 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3025 3371 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3026 3372 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3027 3373 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3028 3374 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3029 3375 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3030 3376 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3031 3377 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3032 3378 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3033 3379 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3034 3380 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3035 3381 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3036 3382 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3037 3383 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3038 3384 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3039 3385 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3040 3386 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3041 3387 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3042 3388 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3043 3389 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3044 3390 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3083 3429 7.997773 ACATGACTACTACATACGGATGTAT 57.002 36.000 20.64 13.02 45.42 2.29
3084 3430 8.907222 TTACATGACTACTACATACGGATGTA 57.093 34.615 19.32 19.32 44.77 2.29
3086 3432 9.692749 ATTTTACATGACTACTACATACGGATG 57.307 33.333 5.94 5.94 39.16 3.51
3087 3433 9.692749 CATTTTACATGACTACTACATACGGAT 57.307 33.333 0.00 0.00 0.00 4.18
3088 3434 8.689061 ACATTTTACATGACTACTACATACGGA 58.311 33.333 0.00 0.00 0.00 4.69
3089 3435 8.867112 ACATTTTACATGACTACTACATACGG 57.133 34.615 0.00 0.00 0.00 4.02
3090 3436 9.731819 AGACATTTTACATGACTACTACATACG 57.268 33.333 0.00 0.00 0.00 3.06
3117 3463 8.520351 CCTCCGTTCCTAAATATTTGTTTTTCT 58.480 33.333 11.05 0.00 0.00 2.52
3118 3464 7.758076 CCCTCCGTTCCTAAATATTTGTTTTTC 59.242 37.037 11.05 0.00 0.00 2.29
3119 3465 7.452189 TCCCTCCGTTCCTAAATATTTGTTTTT 59.548 33.333 11.05 0.00 0.00 1.94
3120 3466 6.949463 TCCCTCCGTTCCTAAATATTTGTTTT 59.051 34.615 11.05 0.00 0.00 2.43
3121 3467 6.486941 TCCCTCCGTTCCTAAATATTTGTTT 58.513 36.000 11.05 0.00 0.00 2.83
3122 3468 6.069705 TCCCTCCGTTCCTAAATATTTGTT 57.930 37.500 11.05 0.00 0.00 2.83
3123 3469 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3124 3470 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3125 3471 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3126 3472 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
3127 3473 8.345306 AGATATACTCCCTCCGTTCCTAAATAT 58.655 37.037 0.00 0.00 0.00 1.28
3128 3474 7.614583 CAGATATACTCCCTCCGTTCCTAAATA 59.385 40.741 0.00 0.00 0.00 1.40
3129 3475 6.437793 CAGATATACTCCCTCCGTTCCTAAAT 59.562 42.308 0.00 0.00 0.00 1.40
3130 3476 5.773680 CAGATATACTCCCTCCGTTCCTAAA 59.226 44.000 0.00 0.00 0.00 1.85
3131 3477 5.163012 ACAGATATACTCCCTCCGTTCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
3132 3478 4.353191 ACAGATATACTCCCTCCGTTCCTA 59.647 45.833 0.00 0.00 0.00 2.94
3133 3479 3.140519 ACAGATATACTCCCTCCGTTCCT 59.859 47.826 0.00 0.00 0.00 3.36
3134 3480 3.498334 ACAGATATACTCCCTCCGTTCC 58.502 50.000 0.00 0.00 0.00 3.62
3135 3481 5.532664 AAACAGATATACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
3136 3482 5.671493 CAAAACAGATATACTCCCTCCGTT 58.329 41.667 0.00 0.00 0.00 4.44
3137 3483 4.443034 GCAAAACAGATATACTCCCTCCGT 60.443 45.833 0.00 0.00 0.00 4.69
3138 3484 4.058817 GCAAAACAGATATACTCCCTCCG 58.941 47.826 0.00 0.00 0.00 4.63
3139 3485 5.036117 TGCAAAACAGATATACTCCCTCC 57.964 43.478 0.00 0.00 0.00 4.30
3140 3486 5.471456 CCATGCAAAACAGATATACTCCCTC 59.529 44.000 0.00 0.00 0.00 4.30
3141 3487 5.380043 CCATGCAAAACAGATATACTCCCT 58.620 41.667 0.00 0.00 0.00 4.20
3142 3488 4.022849 GCCATGCAAAACAGATATACTCCC 60.023 45.833 0.00 0.00 0.00 4.30
3143 3489 4.823989 AGCCATGCAAAACAGATATACTCC 59.176 41.667 0.00 0.00 0.00 3.85
3144 3490 5.333645 CGAGCCATGCAAAACAGATATACTC 60.334 44.000 0.00 0.00 0.00 2.59
3145 3491 4.512944 CGAGCCATGCAAAACAGATATACT 59.487 41.667 0.00 0.00 0.00 2.12
3146 3492 4.319766 CCGAGCCATGCAAAACAGATATAC 60.320 45.833 0.00 0.00 0.00 1.47
3147 3493 3.814842 CCGAGCCATGCAAAACAGATATA 59.185 43.478 0.00 0.00 0.00 0.86
3148 3494 2.620115 CCGAGCCATGCAAAACAGATAT 59.380 45.455 0.00 0.00 0.00 1.63
3178 3524 2.732763 TGCAGCAGGTTATTATGGCAA 58.267 42.857 0.00 0.00 0.00 4.52
3179 3525 2.433662 TGCAGCAGGTTATTATGGCA 57.566 45.000 0.00 0.00 0.00 4.92
3180 3526 4.082571 CCTATTGCAGCAGGTTATTATGGC 60.083 45.833 7.37 0.00 0.00 4.40
3181 3527 4.460382 CCCTATTGCAGCAGGTTATTATGG 59.540 45.833 13.08 0.00 0.00 2.74
3182 3528 4.082571 GCCCTATTGCAGCAGGTTATTATG 60.083 45.833 13.08 0.08 0.00 1.90
3183 3529 4.082125 GCCCTATTGCAGCAGGTTATTAT 58.918 43.478 13.08 0.00 0.00 1.28
3233 3580 3.716872 TCTCAGGATTTTGGATAGTCCCC 59.283 47.826 0.00 0.00 35.03 4.81



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.