Multiple sequence alignment - TraesCS3A01G180500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G180500 chr3A 100.000 6691 0 0 1 6691 208240330 208247020 0.000000e+00 12357
1 TraesCS3A01G180500 chr3D 95.488 2726 74 11 1636 4320 170676118 170678835 0.000000e+00 4307
2 TraesCS3A01G180500 chr3D 96.220 2381 69 6 4318 6691 170679092 170681458 0.000000e+00 3879
3 TraesCS3A01G180500 chr3D 96.064 813 22 4 829 1636 170675231 170676038 0.000000e+00 1315
4 TraesCS3A01G180500 chr3D 96.189 761 29 0 1 761 170674157 170674917 0.000000e+00 1245
5 TraesCS3A01G180500 chr3D 96.053 76 3 0 3244 3319 555303163 555303088 2.530000e-24 124
6 TraesCS3A01G180500 chr3D 94.872 78 3 1 3246 3323 22679071 22679147 3.280000e-23 121
7 TraesCS3A01G180500 chr3D 94.872 78 3 1 3246 3323 22767887 22767811 3.280000e-23 121
8 TraesCS3A01G180500 chr3D 95.946 74 3 0 3246 3319 436676911 436676984 3.280000e-23 121
9 TraesCS3A01G180500 chr3B 97.105 2211 38 7 2370 4556 246156568 246158776 0.000000e+00 3705
10 TraesCS3A01G180500 chr3B 96.360 2143 70 2 4554 6691 246158899 246161038 0.000000e+00 3518
11 TraesCS3A01G180500 chr3B 93.419 1641 67 17 1 1636 246151851 246153455 0.000000e+00 2394
12 TraesCS3A01G180500 chr3B 92.886 745 32 6 1634 2378 246153534 246154257 0.000000e+00 1062
13 TraesCS3A01G180500 chr6A 90.191 418 27 6 1180 1597 61706049 61705646 3.550000e-147 532
14 TraesCS3A01G180500 chr1B 97.368 76 2 0 3246 3321 580632944 580632869 5.450000e-26 130
15 TraesCS3A01G180500 chr4B 92.941 85 6 0 3246 3330 631527787 631527871 2.530000e-24 124
16 TraesCS3A01G180500 chr6B 90.805 87 7 1 3246 3332 551951881 551951966 1.520000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G180500 chr3A 208240330 208247020 6690 False 12357.00 12357 100.00000 1 6691 1 chr3A.!!$F1 6690
1 TraesCS3A01G180500 chr3D 170674157 170681458 7301 False 2686.50 4307 95.99025 1 6691 4 chr3D.!!$F3 6690
2 TraesCS3A01G180500 chr3B 246151851 246161038 9187 False 2669.75 3705 94.94250 1 6691 4 chr3B.!!$F1 6690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 1174 0.251916 CCAACAATGGGCCGACTCTA 59.748 55.000 0.00 0.0 43.51 2.43 F
1419 1669 0.322546 AGTTTCCGCTGGGATGGTTC 60.323 55.000 0.00 0.0 43.41 3.62 F
1476 1726 1.155390 CCGGTATGCCTAGGGGAGA 59.845 63.158 11.72 0.0 33.58 3.71 F
3382 6084 0.999712 CCAGTTTATCCCACCCAGGT 59.000 55.000 0.00 0.0 34.66 4.00 F
3565 6269 1.216678 TCTGGATCTCTCACTCCCTCC 59.783 57.143 0.00 0.0 0.00 4.30 F
5259 8352 1.382629 GGCTTTGCTTCTACCCCCA 59.617 57.895 0.00 0.0 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2440 0.394938 TTACAGGGCTCGCTGAACAA 59.605 50.000 18.84 8.12 0.00 2.83 R
3165 5834 0.335705 TGGTATCACCTCCGGTGGTA 59.664 55.000 27.03 15.79 46.32 3.25 R
3438 6140 2.796651 CGTTAGGCGCTAGTCGGT 59.203 61.111 7.64 0.00 38.94 4.69 R
5259 8352 1.623542 GGTGGTAGGGGCGATGAACT 61.624 60.000 0.00 0.00 0.00 3.01 R
5392 8486 1.137086 GCACAGATACAGTCGGGTGAT 59.863 52.381 0.00 0.00 38.49 3.06 R
6115 9211 0.891373 TCGTTCCAGGAGAGCTCTTG 59.109 55.000 19.36 13.11 36.57 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.230281 AATTCTCCCCTGCCTCCCA 60.230 57.895 0.00 0.00 0.00 4.37
155 156 3.888930 CTGACCTCCTTCCTCACTCTATC 59.111 52.174 0.00 0.00 0.00 2.08
171 172 2.617308 TCTATCGTAGAACTCCAAGCCG 59.383 50.000 0.00 0.00 43.58 5.52
306 307 4.012895 CCACGCGCACACAACTCC 62.013 66.667 5.73 0.00 0.00 3.85
316 317 4.048504 CGCACACAACTCCGATATAATCA 58.951 43.478 0.00 0.00 0.00 2.57
320 321 5.234329 CACACAACTCCGATATAATCACACC 59.766 44.000 0.00 0.00 0.00 4.16
450 451 2.415010 CAGAGGCGACGGGATGAG 59.585 66.667 0.00 0.00 0.00 2.90
452 453 3.917760 GAGGCGACGGGATGAGGG 61.918 72.222 0.00 0.00 0.00 4.30
762 763 2.734723 CGGTGTGAGTGCGAGTGG 60.735 66.667 0.00 0.00 0.00 4.00
764 765 2.357517 GTGTGAGTGCGAGTGGGG 60.358 66.667 0.00 0.00 0.00 4.96
781 782 1.612739 GGGGGAGGAGAGGAACGTT 60.613 63.158 0.00 0.00 0.00 3.99
855 1102 3.509967 TCCGAGCTCACTTGTATTTGAGA 59.490 43.478 15.40 0.00 41.65 3.27
864 1111 7.710907 GCTCACTTGTATTTGAGACATGGTATA 59.289 37.037 0.00 0.00 41.65 1.47
927 1174 0.251916 CCAACAATGGGCCGACTCTA 59.748 55.000 0.00 0.00 43.51 2.43
943 1190 4.693566 CGACTCTAAGTAAATGGCCACAAA 59.306 41.667 8.16 0.00 0.00 2.83
1188 1438 2.179517 CTCGAGGCGCTCTTCGTT 59.820 61.111 21.87 0.00 41.07 3.85
1399 1649 3.952323 TGTATCGTTTGGTTTGGGAAACA 59.048 39.130 0.00 0.00 43.15 2.83
1401 1651 3.512033 TCGTTTGGTTTGGGAAACAAG 57.488 42.857 0.00 0.00 42.95 3.16
1419 1669 0.322546 AGTTTCCGCTGGGATGGTTC 60.323 55.000 0.00 0.00 43.41 3.62
1452 1702 2.292267 GACAACAGCCACTATCCCATG 58.708 52.381 0.00 0.00 0.00 3.66
1476 1726 1.155390 CCGGTATGCCTAGGGGAGA 59.845 63.158 11.72 0.00 33.58 3.71
1502 1752 5.812642 CGTATGCCTATGCCCTAAATCTAAG 59.187 44.000 0.00 0.00 36.33 2.18
1527 1779 5.426509 TCAGGACATTGTTGAGATAGTGGAT 59.573 40.000 0.00 0.00 0.00 3.41
1532 1784 9.429359 GGACATTGTTGAGATAGTGGATATTAG 57.571 37.037 0.00 0.00 0.00 1.73
1533 1785 9.988815 GACATTGTTGAGATAGTGGATATTAGT 57.011 33.333 0.00 0.00 0.00 2.24
1565 1817 7.846066 TGTTTAGATTATGTTGGGGAAATTGG 58.154 34.615 0.00 0.00 0.00 3.16
1706 2039 1.419762 TCTGCTTGGCCTAGTTTGTCA 59.580 47.619 15.85 3.90 0.00 3.58
2068 2401 5.529800 ACGGCCATAATTTTACGCTAGAAAT 59.470 36.000 2.24 0.00 0.00 2.17
2071 2404 7.519970 CGGCCATAATTTTACGCTAGAAATTCT 60.520 37.037 2.24 0.00 36.92 2.40
2128 2461 1.828595 TGTTCAGCGAGCCCTGTAATA 59.171 47.619 0.00 0.00 34.47 0.98
2163 2496 7.756722 GGATAGGAAATTGTGAACAGTTTGATG 59.243 37.037 8.45 0.00 36.19 3.07
2174 2507 2.035066 ACAGTTTGATGGTCTGCTTTGC 59.965 45.455 0.00 0.00 33.12 3.68
2205 2538 3.425713 CGGCGCATGAACAGCTGT 61.426 61.111 15.25 15.25 32.96 4.40
2260 2607 3.325293 AGATGTGCGAGTTGTCAATCT 57.675 42.857 0.00 0.00 0.00 2.40
2482 5147 9.310449 ACTATTCTCCTACTGAACTGAAGTAAA 57.690 33.333 0.00 0.00 29.96 2.01
2617 5284 9.457436 GGGAATAGTCATTTAAAGGTTCAACTA 57.543 33.333 0.00 1.25 0.00 2.24
2623 5290 9.326413 AGTCATTTAAAGGTTCAACTATATCCG 57.674 33.333 0.00 0.00 0.00 4.18
2635 5302 8.916654 GTTCAACTATATCCGAAGTATCATGTG 58.083 37.037 0.00 0.00 0.00 3.21
3254 5942 7.243487 TCAGTGCGCTAAAAGATAAAGAAATG 58.757 34.615 9.73 0.00 0.00 2.32
3382 6084 0.999712 CCAGTTTATCCCACCCAGGT 59.000 55.000 0.00 0.00 34.66 4.00
3561 6265 7.060383 TGATAATTTCTGGATCTCTCACTCC 57.940 40.000 0.00 0.00 0.00 3.85
3565 6269 1.216678 TCTGGATCTCTCACTCCCTCC 59.783 57.143 0.00 0.00 0.00 4.30
3596 6300 2.047750 TGGTTATGCGCGCACTGA 60.048 55.556 39.05 22.26 0.00 3.41
3975 6679 5.702349 AGATTGGTCAAAAAGAGCTTCAG 57.298 39.130 0.00 0.00 44.98 3.02
4287 6991 1.917303 GGTGCAAAAAGTGTGTGTTCG 59.083 47.619 0.00 0.00 0.00 3.95
4314 7018 4.322801 CCGTCTCCAGTCCAGAAATAACTT 60.323 45.833 0.00 0.00 0.00 2.66
4820 7908 4.137543 GTTCCCATAAGAGGCATTCGAAT 58.862 43.478 4.39 4.39 0.00 3.34
4915 8003 5.710567 GGAACCCAGTAAAGCACTTTCTATT 59.289 40.000 0.00 0.00 34.26 1.73
5031 8119 4.241590 TGCAACAATTCTACCTTGCTTG 57.758 40.909 0.00 0.00 39.81 4.01
5117 8210 6.969993 TTACAAAACTTTGCAGGTAATCCT 57.030 33.333 2.07 0.00 42.01 3.24
5129 8222 5.046304 TGCAGGTAATCCTCCTTAGATATGC 60.046 44.000 0.00 0.00 43.07 3.14
5259 8352 1.382629 GGCTTTGCTTCTACCCCCA 59.617 57.895 0.00 0.00 0.00 4.96
5265 8358 1.668826 TGCTTCTACCCCCAGTTCAT 58.331 50.000 0.00 0.00 0.00 2.57
5286 8379 1.749334 GCCCCTACCACCAGATCTCG 61.749 65.000 0.00 0.00 0.00 4.04
5392 8486 5.955959 TCTAGCTAGGATGTTTCTAACACCA 59.044 40.000 20.58 0.00 45.50 4.17
5407 8501 1.480954 ACACCATCACCCGACTGTATC 59.519 52.381 0.00 0.00 0.00 2.24
5500 8596 5.125097 GGTGATCGAGGAGTTACTCTGTTTA 59.875 44.000 12.41 0.00 35.33 2.01
5618 8714 6.148480 AGCTTTAACTGCTCTGTGAAACTATG 59.852 38.462 0.00 0.00 35.67 2.23
5626 8722 2.169561 TCTGTGAAACTATGCGGGCATA 59.830 45.455 12.40 12.40 38.04 3.14
5667 8763 6.989759 TGTCGCTGCCTGAGAAATAATTATAA 59.010 34.615 0.00 0.00 0.00 0.98
5670 8766 9.066892 TCGCTGCCTGAGAAATAATTATAAAAT 57.933 29.630 0.00 0.00 0.00 1.82
5786 8882 7.324616 GTGCTTGACATCTCAAACTGTTTATTC 59.675 37.037 5.31 0.00 35.92 1.75
5837 8933 8.856103 AGTAGCAATGTTAAATTGTTACAACCT 58.144 29.630 19.36 1.82 43.49 3.50
6018 9114 2.586425 TCAAAAAGCTCTCCTTGGGTG 58.414 47.619 0.00 0.00 33.01 4.61
6022 9118 2.278332 AAGCTCTCCTTGGGTGTTTC 57.722 50.000 0.00 0.00 30.99 2.78
6037 9133 2.752903 GTGTTTCCCCATATCGCAAAGT 59.247 45.455 0.00 0.00 0.00 2.66
6132 9228 2.301583 AGTTCAAGAGCTCTCCTGGAAC 59.698 50.000 26.59 26.59 36.00 3.62
6297 9393 1.293498 GGAACTCTTCGCTGCCTCA 59.707 57.895 0.00 0.00 0.00 3.86
6522 9618 2.839098 CAACCCCAGAGTGCAGGT 59.161 61.111 0.00 0.00 0.00 4.00
6530 9626 1.546323 CCAGAGTGCAGGTGGAACAAT 60.546 52.381 3.22 0.00 44.16 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.408702 ACTGCGGTTGTGAATTTGCTT 59.591 42.857 0.00 0.00 0.00 3.91
155 156 1.810030 GCCGGCTTGGAGTTCTACG 60.810 63.158 22.15 0.00 42.00 3.51
178 179 1.719063 TTCTCCAAGGCCAGCAAGGT 61.719 55.000 5.01 0.00 40.61 3.50
294 295 4.048504 TGATTATATCGGAGTTGTGTGCG 58.951 43.478 0.00 0.00 0.00 5.34
320 321 0.180406 CCTTTCCCCGTCCACCTATG 59.820 60.000 0.00 0.00 0.00 2.23
621 622 0.462047 ATGTGGACCGAATTCTCGCC 60.462 55.000 3.52 2.42 44.04 5.54
627 628 0.322816 AGCAGCATGTGGACCGAATT 60.323 50.000 0.00 0.00 39.31 2.17
764 765 0.903454 TGAACGTTCCTCTCCTCCCC 60.903 60.000 24.78 0.00 0.00 4.81
766 767 1.673329 GCTTGAACGTTCCTCTCCTCC 60.673 57.143 24.78 0.00 0.00 4.30
768 769 0.038159 CGCTTGAACGTTCCTCTCCT 60.038 55.000 24.78 0.00 0.00 3.69
770 771 1.627550 GGCGCTTGAACGTTCCTCTC 61.628 60.000 24.78 10.63 34.88 3.20
771 772 1.668151 GGCGCTTGAACGTTCCTCT 60.668 57.895 24.78 0.00 34.88 3.69
772 773 2.861006 GGCGCTTGAACGTTCCTC 59.139 61.111 24.78 12.62 34.88 3.71
773 774 3.041940 CGGCGCTTGAACGTTCCT 61.042 61.111 24.78 0.00 34.88 3.36
776 777 4.012895 CTGCGGCGCTTGAACGTT 62.013 61.111 33.26 0.00 34.88 3.99
778 779 4.724697 CACTGCGGCGCTTGAACG 62.725 66.667 33.26 15.46 0.00 3.95
781 782 3.043713 CTTCACTGCGGCGCTTGA 61.044 61.111 33.26 29.01 0.00 3.02
813 816 1.610554 TACAGCCCAGCCCTAACGAC 61.611 60.000 0.00 0.00 0.00 4.34
816 819 0.108774 GGATACAGCCCAGCCCTAAC 59.891 60.000 0.00 0.00 0.00 2.34
864 1111 0.704076 TAAACCAAGCTCATGGGCCT 59.296 50.000 15.67 0.00 45.18 5.19
927 1174 5.510690 GGCTAAACTTTGTGGCCATTTACTT 60.511 40.000 9.72 1.18 42.08 2.24
943 1190 1.985159 TCATGGTGGACTGGCTAAACT 59.015 47.619 0.00 0.00 0.00 2.66
995 1242 2.288729 TGCGACTGCTGCATCATAATTC 59.711 45.455 1.31 0.00 43.34 2.17
1399 1649 0.112412 AACCATCCCAGCGGAAACTT 59.888 50.000 0.00 0.00 43.10 2.66
1401 1651 1.313091 GGAACCATCCCAGCGGAAAC 61.313 60.000 0.00 0.00 43.10 2.78
1419 1669 0.813610 TGTTGTCCACACGCTTCAGG 60.814 55.000 0.00 0.00 0.00 3.86
1445 1695 1.140312 ATACCGGCAGAACATGGGAT 58.860 50.000 0.00 0.00 0.00 3.85
1452 1702 0.249911 CCTAGGCATACCGGCAGAAC 60.250 60.000 0.00 0.00 44.47 3.01
1476 1726 1.724545 TTAGGGCATAGGCATACGGT 58.275 50.000 0.15 0.00 43.71 4.83
1502 1752 4.872691 CCACTATCTCAACAATGTCCTGAC 59.127 45.833 0.00 0.00 0.00 3.51
1532 1784 9.052759 CCCCAACATAATCTAAACATGTACTAC 57.947 37.037 0.00 0.00 32.70 2.73
1533 1785 8.994500 TCCCCAACATAATCTAAACATGTACTA 58.006 33.333 0.00 0.00 32.70 1.82
1534 1786 7.867921 TCCCCAACATAATCTAAACATGTACT 58.132 34.615 0.00 0.00 32.70 2.73
1570 1822 5.294306 TCAAATTAGCTTAGCCAGAATCACG 59.706 40.000 0.00 0.00 0.00 4.35
1706 2039 6.817765 ACACGAAATATGTTCCTTGTTGAT 57.182 33.333 0.00 0.00 0.00 2.57
1755 2088 5.122396 ACCTCTCAATACATTTGTTCGAAGC 59.878 40.000 0.00 0.00 0.00 3.86
2068 2401 8.548025 TCTGATGAAATATGTTTGTAGGGAGAA 58.452 33.333 0.00 0.00 0.00 2.87
2071 2404 6.767902 GCTCTGATGAAATATGTTTGTAGGGA 59.232 38.462 0.00 0.00 0.00 4.20
2107 2440 0.394938 TTACAGGGCTCGCTGAACAA 59.605 50.000 18.84 8.12 0.00 2.83
2163 2496 1.912371 GCAGTACCGCAAAGCAGACC 61.912 60.000 0.00 0.00 0.00 3.85
2260 2607 7.801716 ACAAGTAACTTCACAGCTTCATAAA 57.198 32.000 0.00 0.00 0.00 1.40
2360 2707 5.647658 TCATCACCCATAAGTCAAATCACAC 59.352 40.000 0.00 0.00 0.00 3.82
2586 5253 6.800890 ACCTTTAAATGACTATTCCCCAACT 58.199 36.000 0.00 0.00 0.00 3.16
2617 5284 6.672266 AGGAACACATGATACTTCGGATAT 57.328 37.500 0.00 0.00 0.00 1.63
2929 5598 4.214758 AGACGTTTTTCTACATTTTCCCGG 59.785 41.667 0.00 0.00 0.00 5.73
3165 5834 0.335705 TGGTATCACCTCCGGTGGTA 59.664 55.000 27.03 15.79 46.32 3.25
3438 6140 2.796651 CGTTAGGCGCTAGTCGGT 59.203 61.111 7.64 0.00 38.94 4.69
3561 6265 2.112691 ACCACATATAGAGGGAGGGAGG 59.887 54.545 0.00 0.00 31.39 4.30
3565 6269 4.382040 CGCATAACCACATATAGAGGGAGG 60.382 50.000 0.00 0.00 31.39 4.30
3596 6300 8.026396 AGCAATTTCTCCATTTAGGCATAAAT 57.974 30.769 10.45 10.45 41.33 1.40
3975 6679 4.576879 TCATCCATCAGAGATGCTAATGC 58.423 43.478 1.52 0.00 40.79 3.56
4314 7018 5.958380 AGACTCTGTCCAAGTCCAATACATA 59.042 40.000 0.00 0.00 43.41 2.29
4378 7341 5.405935 ACATCTTTCTTGGGTTTTATGCC 57.594 39.130 0.00 0.00 0.00 4.40
4820 7908 2.884012 CAACAGTACACCCATGCTTCAA 59.116 45.455 0.00 0.00 0.00 2.69
4915 8003 4.662468 TTTGCTGCAACTCACCAATAAA 57.338 36.364 15.72 0.00 0.00 1.40
4963 8051 4.510340 GGTAATAACTGGATTACTGCCGTG 59.490 45.833 11.90 0.00 40.62 4.94
5031 8119 7.801783 GGTTTGCATCTGTTAGTACTTAAACAC 59.198 37.037 0.00 0.00 32.43 3.32
5129 8222 9.129209 GATGATGATATGATGCAAATCAAGTTG 57.871 33.333 0.00 0.00 33.60 3.16
5259 8352 1.623542 GGTGGTAGGGGCGATGAACT 61.624 60.000 0.00 0.00 0.00 3.01
5265 8358 1.760875 GATCTGGTGGTAGGGGCGA 60.761 63.158 0.00 0.00 0.00 5.54
5286 8379 3.564644 CCTGATGATCTGAACCAATGCTC 59.435 47.826 0.50 0.00 0.00 4.26
5392 8486 1.137086 GCACAGATACAGTCGGGTGAT 59.863 52.381 0.00 0.00 38.49 3.06
5428 8522 5.995282 ACTTCAACATTTTCATCGTCCTACA 59.005 36.000 0.00 0.00 0.00 2.74
5500 8596 7.417003 GGTTTTACACAGGTAAGGTGAAAATGT 60.417 37.037 0.00 0.00 40.40 2.71
5582 8678 6.969828 AGCAGTTAAAGCTCAGTACATAAC 57.030 37.500 0.00 0.00 38.01 1.89
5618 8714 2.859538 CAAATCAACAATGTATGCCCGC 59.140 45.455 0.00 0.00 0.00 6.13
5626 8722 4.503734 CAGCGACAAACAAATCAACAATGT 59.496 37.500 0.00 0.00 0.00 2.71
5687 8783 3.976169 TCCGCCAATTTGAAGTTTCTTG 58.024 40.909 0.00 0.00 0.00 3.02
5748 8844 4.150897 TGTCAAGCACAGTTACTCCTTT 57.849 40.909 0.00 0.00 0.00 3.11
5749 8845 3.838244 TGTCAAGCACAGTTACTCCTT 57.162 42.857 0.00 0.00 0.00 3.36
5750 8846 3.580458 AGATGTCAAGCACAGTTACTCCT 59.420 43.478 0.00 0.00 38.85 3.69
5761 8857 6.882610 ATAAACAGTTTGAGATGTCAAGCA 57.117 33.333 19.25 1.30 44.21 3.91
5837 8933 3.804036 CCACTCCTATTATTTCGGTGCA 58.196 45.455 0.00 0.00 0.00 4.57
6018 9114 5.767816 ATAACTTTGCGATATGGGGAAAC 57.232 39.130 0.00 0.00 0.00 2.78
6022 9118 9.832445 ATAATAGTATAACTTTGCGATATGGGG 57.168 33.333 0.00 0.00 0.00 4.96
6115 9211 0.891373 TCGTTCCAGGAGAGCTCTTG 59.109 55.000 19.36 13.11 36.57 3.02
6132 9228 1.773496 GTTTTCTCGGTCGCAGTCG 59.227 57.895 0.00 0.00 0.00 4.18
6297 9393 2.340078 CGCATCGATGACCCCGAT 59.660 61.111 29.20 0.00 46.32 4.18
6333 9429 5.960811 AGATGACAAGGAGGAGAAATCACTA 59.039 40.000 0.00 0.00 0.00 2.74
6516 9612 4.446167 CCATATCCTATTGTTCCACCTGCA 60.446 45.833 0.00 0.00 0.00 4.41
6522 9618 5.373222 CCGTTTCCATATCCTATTGTTCCA 58.627 41.667 0.00 0.00 0.00 3.53
6530 9626 2.051692 CACCCCCGTTTCCATATCCTA 58.948 52.381 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.