Multiple sequence alignment - TraesCS3A01G179700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G179700 chr3A 100.000 2013 0 0 1855 3867 208033437 208035449 0.000000e+00 3718
1 TraesCS3A01G179700 chr3A 100.000 1473 0 0 1 1473 208031583 208033055 0.000000e+00 2721
2 TraesCS3A01G179700 chr3A 92.258 155 10 1 2084 2238 582283215 582283367 6.500000e-53 219
3 TraesCS3A01G179700 chr3B 92.828 1478 80 16 16 1473 245902987 245904458 0.000000e+00 2119
4 TraesCS3A01G179700 chr3B 87.116 683 44 14 2058 2728 245904789 245905439 0.000000e+00 734
5 TraesCS3A01G179700 chr3B 90.658 471 22 9 2744 3192 245905423 245905893 1.190000e-169 606
6 TraesCS3A01G179700 chr3B 86.881 404 30 8 3199 3587 245913134 245913529 7.680000e-117 431
7 TraesCS3A01G179700 chr3B 94.146 205 10 1 1855 2057 245904525 245904729 1.040000e-80 311
8 TraesCS3A01G179700 chr3B 91.358 162 11 2 2081 2241 396271876 396272035 6.500000e-53 219
9 TraesCS3A01G179700 chr3D 92.823 1463 70 14 16 1452 170535977 170537430 0.000000e+00 2087
10 TraesCS3A01G179700 chr3D 92.047 679 36 8 2058 2723 170537773 170538446 0.000000e+00 939
11 TraesCS3A01G179700 chr3D 84.838 897 64 32 2742 3587 170538433 170539308 0.000000e+00 837
12 TraesCS3A01G179700 chr3D 90.119 253 23 1 3617 3867 508451528 508451276 1.040000e-85 327
13 TraesCS3A01G179700 chr3D 94.089 203 12 0 1855 2057 170537513 170537715 3.750000e-80 309
14 TraesCS3A01G179700 chr3D 91.358 162 11 2 2081 2241 322435289 322435448 6.500000e-53 219
15 TraesCS3A01G179700 chr7B 85.664 286 30 6 3591 3867 36488863 36488580 1.360000e-74 291
16 TraesCS3A01G179700 chr5B 84.965 286 30 7 3591 3867 503084082 503084363 1.060000e-70 278
17 TraesCS3A01G179700 chr4A 85.507 276 29 5 3592 3858 276880651 276880924 1.060000e-70 278
18 TraesCS3A01G179700 chr4B 91.824 159 11 1 2080 2238 106227405 106227561 1.810000e-53 220
19 TraesCS3A01G179700 chr6D 91.613 155 11 1 2084 2238 392273074 392273226 3.030000e-51 213
20 TraesCS3A01G179700 chr4D 91.195 159 11 2 2081 2238 74079348 74079504 3.030000e-51 213
21 TraesCS3A01G179700 chr5D 89.349 169 14 3 2074 2241 220683352 220683187 3.910000e-50 209
22 TraesCS3A01G179700 chr1A 88.757 169 16 2 2070 2238 395177614 395177449 1.820000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G179700 chr3A 208031583 208035449 3866 False 3219.5 3718 100.00000 1 3867 2 chr3A.!!$F2 3866
1 TraesCS3A01G179700 chr3B 245902987 245905893 2906 False 942.5 2119 91.18700 16 3192 4 chr3B.!!$F3 3176
2 TraesCS3A01G179700 chr3D 170535977 170539308 3331 False 1043.0 2087 90.94925 16 3587 4 chr3D.!!$F2 3571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 945 0.037326 GTGACAAGGAGATGCGTGGA 60.037 55.0 0.00 0.0 0.0 4.02 F
2026 2063 0.109342 AGCCAGAACTGACTTGGGTG 59.891 55.0 3.19 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2739 2850 0.261696 AGGGGGAGCAACAGTGTTTT 59.738 50.0 5.57 0.0 0.0 2.43 R
3430 3565 0.038251 AGATGCGCAGTCTCGTTTCA 60.038 50.0 18.32 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.807538 CGCGGCTGCAAAGCATCT 61.808 61.111 19.50 0.00 42.97 2.90
30 31 2.163815 CTGCAAAGCATCTCTTCCCTTG 59.836 50.000 0.00 0.00 38.13 3.61
278 281 6.521821 CGCTTTCTTCGAATATTTTTCCGAAA 59.478 34.615 0.00 0.93 39.96 3.46
335 338 2.478894 CTCCAACGCATCGTGTTAGTTT 59.521 45.455 0.00 0.00 39.99 2.66
358 361 1.726791 CGTTCGATTTGACTGGTCCAG 59.273 52.381 17.88 17.88 37.52 3.86
384 387 5.083122 TGGCAGATTGTTTTCCCAGAATTA 58.917 37.500 0.00 0.00 0.00 1.40
387 390 7.105588 GGCAGATTGTTTTCCCAGAATTATTT 58.894 34.615 0.00 0.00 0.00 1.40
402 405 8.988060 CCAGAATTATTTGGGGTTTAGGTTTAT 58.012 33.333 0.00 0.00 0.00 1.40
444 455 1.078214 CCTGCTCGGGCTGATTTCA 60.078 57.895 16.68 0.00 39.31 2.69
447 458 2.115291 GCTCGGGCTGATTTCACCC 61.115 63.158 0.00 7.69 40.51 4.61
556 567 1.073923 GTTCCACTGGATGTTCACCCT 59.926 52.381 0.00 0.00 0.00 4.34
607 618 2.102420 TCCTGTTCTTTCTTCAGCACGA 59.898 45.455 0.00 0.00 0.00 4.35
616 627 3.842925 TTCAGCACGACCAAGGCCC 62.843 63.158 0.00 0.00 0.00 5.80
706 717 5.514274 TTGATCCAGTTTGAAACAAGTCC 57.486 39.130 11.02 0.00 0.00 3.85
738 749 1.412710 ACGGACGGATTATGACAGCAT 59.587 47.619 0.00 0.00 38.54 3.79
806 822 1.899142 TGCTGTCATGTGGTGTAGCTA 59.101 47.619 0.00 0.00 38.77 3.32
819 835 5.975939 GTGGTGTAGCTACCGATTTAGTTAG 59.024 44.000 21.01 0.00 43.87 2.34
826 842 6.870769 AGCTACCGATTTAGTTAGTTAGCAA 58.129 36.000 0.00 0.00 0.00 3.91
827 843 7.325694 AGCTACCGATTTAGTTAGTTAGCAAA 58.674 34.615 0.00 0.00 0.00 3.68
849 868 8.981647 GCAAAGTATTGTTGTTTCTCATTCATT 58.018 29.630 0.00 0.00 38.85 2.57
853 872 8.308931 AGTATTGTTGTTTCTCATTCATTGCAT 58.691 29.630 0.00 0.00 0.00 3.96
923 945 0.037326 GTGACAAGGAGATGCGTGGA 60.037 55.000 0.00 0.00 0.00 4.02
930 952 0.247736 GGAGATGCGTGGACAGTTCT 59.752 55.000 0.00 0.00 0.00 3.01
1121 1144 2.291741 CTCAAGGTGGAGTTCTTGTTGC 59.708 50.000 0.00 0.00 40.67 4.17
1342 1365 1.080569 CTGCGGGGTTCAACATTGC 60.081 57.895 0.00 0.00 0.00 3.56
1394 1417 3.009473 ACATCAGAGGAGCTTTGCCTTTA 59.991 43.478 0.00 0.00 35.44 1.85
1395 1418 3.788227 TCAGAGGAGCTTTGCCTTTAA 57.212 42.857 0.00 0.00 35.44 1.52
1396 1419 4.098914 TCAGAGGAGCTTTGCCTTTAAA 57.901 40.909 0.00 0.00 35.44 1.52
1397 1420 4.469657 TCAGAGGAGCTTTGCCTTTAAAA 58.530 39.130 0.00 0.00 35.44 1.52
1398 1421 4.892934 TCAGAGGAGCTTTGCCTTTAAAAA 59.107 37.500 0.00 0.00 35.44 1.94
1452 1487 5.586339 GAGCAGCTGAACTTTTTCTTTTCT 58.414 37.500 20.43 0.00 32.36 2.52
1453 1488 5.970592 AGCAGCTGAACTTTTTCTTTTCTT 58.029 33.333 20.43 0.00 32.36 2.52
1454 1489 6.401394 AGCAGCTGAACTTTTTCTTTTCTTT 58.599 32.000 20.43 0.00 32.36 2.52
1456 1491 8.034804 AGCAGCTGAACTTTTTCTTTTCTTTTA 58.965 29.630 20.43 0.00 32.36 1.52
1457 1492 8.655970 GCAGCTGAACTTTTTCTTTTCTTTTAA 58.344 29.630 20.43 0.00 32.36 1.52
1907 1942 5.576774 TCACGTTATTGTAGAACATCAGCAG 59.423 40.000 0.00 0.00 0.00 4.24
1914 1949 4.058124 TGTAGAACATCAGCAGAACACAC 58.942 43.478 0.00 0.00 0.00 3.82
1988 2023 8.423906 TCCTCTGTTCTCTTAAGACTATTGTT 57.576 34.615 0.00 0.00 0.00 2.83
2026 2063 0.109342 AGCCAGAACTGACTTGGGTG 59.891 55.000 3.19 0.00 0.00 4.61
2102 2198 2.036862 AGTACTCCCTCCGTTCACAAAC 59.963 50.000 0.00 0.00 0.00 2.93
2160 2256 9.093970 TGTATATAGACATGTTTTAGTGTGTGC 57.906 33.333 0.00 0.00 0.00 4.57
2161 2257 9.314321 GTATATAGACATGTTTTAGTGTGTGCT 57.686 33.333 0.00 0.00 0.00 4.40
2172 2268 2.283298 AGTGTGTGCTTGTTCACTCAG 58.717 47.619 0.00 0.00 39.96 3.35
2185 2281 4.038763 TGTTCACTCAGTTCAGTCCGTATT 59.961 41.667 0.00 0.00 0.00 1.89
2266 2362 7.609918 TGCTTCAGTCCTTTATATGCTTGTAAA 59.390 33.333 2.35 2.35 0.00 2.01
2267 2363 8.458843 GCTTCAGTCCTTTATATGCTTGTAAAA 58.541 33.333 3.69 0.00 0.00 1.52
2312 2410 3.743521 TCATGCCATGTATTAGTGCTCC 58.256 45.455 4.31 0.00 0.00 4.70
2333 2432 5.550290 TCCAAAAATTGAATTCTTGGGAGC 58.450 37.500 19.70 0.00 37.67 4.70
2357 2456 2.503331 TCGTCAATGTGCAAAGGTGAT 58.497 42.857 0.00 0.00 0.00 3.06
2405 2514 4.435651 GGCTCGAACATTTACTACTTGTGC 60.436 45.833 0.00 0.00 0.00 4.57
2422 2531 6.585416 ACTTGTGCATCTTTTCTGGATTTTT 58.415 32.000 0.00 0.00 0.00 1.94
2569 2679 4.082026 AGCCCAACATTTCAGCATTCTTAC 60.082 41.667 0.00 0.00 0.00 2.34
2606 2716 6.591448 GCAAATAAGTCTTCATTTTGGGGAAG 59.409 38.462 13.31 0.00 41.42 3.46
2613 2723 4.281688 TCTTCATTTTGGGGAAGCTTTCTG 59.718 41.667 4.35 0.00 40.20 3.02
2621 2731 1.332195 GGAAGCTTTCTGGTGGCTTT 58.668 50.000 0.00 0.00 44.81 3.51
2622 2732 1.000171 GGAAGCTTTCTGGTGGCTTTG 60.000 52.381 0.00 0.00 44.81 2.77
2716 2827 1.859302 TTCCTTTTGGCCAACACTGT 58.141 45.000 20.35 0.00 40.12 3.55
2717 2828 1.859302 TCCTTTTGGCCAACACTGTT 58.141 45.000 20.35 0.00 40.12 3.16
2718 2829 1.480137 TCCTTTTGGCCAACACTGTTG 59.520 47.619 20.35 14.11 40.12 3.33
2719 2830 1.289276 CTTTTGGCCAACACTGTTGC 58.711 50.000 20.35 10.95 0.00 4.17
2720 2831 0.901124 TTTTGGCCAACACTGTTGCT 59.099 45.000 20.35 0.00 0.00 3.91
2721 2832 0.459489 TTTGGCCAACACTGTTGCTC 59.541 50.000 20.35 10.11 0.00 4.26
2722 2833 1.391157 TTGGCCAACACTGTTGCTCC 61.391 55.000 16.05 16.82 0.00 4.70
2723 2834 2.564721 GGCCAACACTGTTGCTCCC 61.565 63.158 15.42 11.21 0.00 4.30
2724 2835 2.908073 GCCAACACTGTTGCTCCCG 61.908 63.158 15.42 3.99 0.00 5.14
2725 2836 2.639286 CAACACTGTTGCTCCCGC 59.361 61.111 8.97 0.00 0.00 6.13
2726 2837 1.893808 CAACACTGTTGCTCCCGCT 60.894 57.895 8.97 0.00 36.97 5.52
2727 2838 1.152963 AACACTGTTGCTCCCGCTT 60.153 52.632 0.00 0.00 36.97 4.68
2728 2839 0.751643 AACACTGTTGCTCCCGCTTT 60.752 50.000 0.00 0.00 36.97 3.51
2729 2840 1.166531 ACACTGTTGCTCCCGCTTTC 61.167 55.000 0.00 0.00 36.97 2.62
2730 2841 1.148273 ACTGTTGCTCCCGCTTTCA 59.852 52.632 0.00 0.00 36.97 2.69
2731 2842 0.465460 ACTGTTGCTCCCGCTTTCAA 60.465 50.000 0.00 0.00 36.97 2.69
2732 2843 0.667993 CTGTTGCTCCCGCTTTCAAA 59.332 50.000 0.00 0.00 36.97 2.69
2733 2844 1.066908 CTGTTGCTCCCGCTTTCAAAA 59.933 47.619 0.00 0.00 36.97 2.44
2734 2845 1.478510 TGTTGCTCCCGCTTTCAAAAA 59.521 42.857 0.00 0.00 36.97 1.94
2892 3003 2.935201 AGTCATTTGCGAGATCAAGCTC 59.065 45.455 12.54 0.00 0.00 4.09
2922 3033 3.058293 AGACAGTTTGTGTTGTGTGTGTG 60.058 43.478 0.00 0.00 40.56 3.82
2924 3035 2.979151 CAGTTTGTGTTGTGTGTGTGTG 59.021 45.455 0.00 0.00 0.00 3.82
2925 3036 2.621055 AGTTTGTGTTGTGTGTGTGTGT 59.379 40.909 0.00 0.00 0.00 3.72
2927 3038 2.177394 TGTGTTGTGTGTGTGTGTCT 57.823 45.000 0.00 0.00 0.00 3.41
2928 3039 2.073056 TGTGTTGTGTGTGTGTGTCTC 58.927 47.619 0.00 0.00 0.00 3.36
2945 3065 3.194755 TGTCTCGCTTATTACTGCCTTCA 59.805 43.478 0.00 0.00 0.00 3.02
2956 3076 9.601217 CTTATTACTGCCTTCACTTGTAGTAAT 57.399 33.333 14.37 14.37 41.52 1.89
3071 3199 1.909302 TCTCTCCCCATTCACCTTGAC 59.091 52.381 0.00 0.00 0.00 3.18
3095 3223 3.199508 AGGAGCTGAGCTGATATTTGTGT 59.800 43.478 13.71 0.00 39.88 3.72
3096 3224 3.559242 GGAGCTGAGCTGATATTTGTGTC 59.441 47.826 13.71 0.00 39.88 3.67
3132 3260 2.887152 ACTCCAAAGTCCAAACTGATGC 59.113 45.455 0.00 0.00 35.36 3.91
3172 3305 1.190643 GGAGAGTGAGTCCCTTCCTG 58.809 60.000 0.00 0.00 0.00 3.86
3223 3358 1.202313 GCGAGTAGCTTCTGACCGATT 60.202 52.381 0.00 0.00 44.04 3.34
3232 3367 0.881118 TCTGACCGATTTTGCTTGCC 59.119 50.000 0.00 0.00 0.00 4.52
3233 3368 0.454957 CTGACCGATTTTGCTTGCCG 60.455 55.000 0.00 0.00 0.00 5.69
3234 3369 1.169661 TGACCGATTTTGCTTGCCGT 61.170 50.000 0.00 0.00 0.00 5.68
3236 3371 1.154035 CCGATTTTGCTTGCCGTCC 60.154 57.895 0.00 0.00 0.00 4.79
3241 3376 1.040339 TTTTGCTTGCCGTCCAACCT 61.040 50.000 0.00 0.00 0.00 3.50
3245 3380 1.298859 GCTTGCCGTCCAACCTAGTG 61.299 60.000 0.00 0.00 0.00 2.74
3269 3404 3.721035 TCATCCATCGATGTTACTGCAG 58.279 45.455 23.27 13.48 45.32 4.41
3274 3409 3.183172 CCATCGATGTTACTGCAGATTCG 59.817 47.826 23.35 18.82 0.00 3.34
3296 3431 4.009002 GCATTGGCATGTTTGGGTTTATT 58.991 39.130 0.00 0.00 40.72 1.40
3298 3433 5.391843 GCATTGGCATGTTTGGGTTTATTTC 60.392 40.000 0.00 0.00 40.72 2.17
3303 3438 4.490743 CATGTTTGGGTTTATTTCGGACC 58.509 43.478 0.00 0.00 0.00 4.46
3312 3447 4.461431 GGTTTATTTCGGACCCATCTTTGT 59.539 41.667 0.00 0.00 0.00 2.83
3314 3449 2.649531 TTTCGGACCCATCTTTGTGT 57.350 45.000 0.00 0.00 0.00 3.72
3316 3451 0.762418 TCGGACCCATCTTTGTGTGT 59.238 50.000 0.00 0.00 0.00 3.72
3317 3452 0.874390 CGGACCCATCTTTGTGTGTG 59.126 55.000 0.00 0.00 0.00 3.82
3318 3453 1.813862 CGGACCCATCTTTGTGTGTGT 60.814 52.381 0.00 0.00 0.00 3.72
3319 3454 1.608590 GGACCCATCTTTGTGTGTGTG 59.391 52.381 0.00 0.00 0.00 3.82
3322 3457 0.661187 CCATCTTTGTGTGTGTGCGC 60.661 55.000 0.00 0.00 0.00 6.09
3323 3458 0.993251 CATCTTTGTGTGTGTGCGCG 60.993 55.000 0.00 0.00 0.00 6.86
3324 3459 2.715864 ATCTTTGTGTGTGTGCGCGC 62.716 55.000 27.26 27.26 36.27 6.86
3325 3460 4.877882 TTTGTGTGTGTGCGCGCG 62.878 61.111 28.44 28.44 38.36 6.86
3357 3492 8.687824 CACGAATGAAGTGCCTTAAATTAATT 57.312 30.769 0.00 0.00 32.52 1.40
3380 3515 2.238646 AGGAACGGGATGCTTACAATCA 59.761 45.455 0.00 0.00 0.00 2.57
3381 3516 3.117888 AGGAACGGGATGCTTACAATCAT 60.118 43.478 0.00 0.00 0.00 2.45
3382 3517 3.251004 GGAACGGGATGCTTACAATCATC 59.749 47.826 0.00 0.00 38.60 2.92
3383 3518 3.845781 ACGGGATGCTTACAATCATCT 57.154 42.857 5.93 0.00 39.14 2.90
3384 3519 4.955811 ACGGGATGCTTACAATCATCTA 57.044 40.909 5.93 0.00 39.14 1.98
3444 3579 0.941463 AGCACTGAAACGAGACTGCG 60.941 55.000 0.00 0.00 37.29 5.18
3445 3580 1.488957 CACTGAAACGAGACTGCGC 59.511 57.895 0.00 0.00 33.86 6.09
3448 3583 0.368227 CTGAAACGAGACTGCGCATC 59.632 55.000 12.24 11.20 33.86 3.91
3449 3584 0.038251 TGAAACGAGACTGCGCATCT 60.038 50.000 12.24 16.17 33.86 2.90
3450 3585 0.642800 GAAACGAGACTGCGCATCTC 59.357 55.000 26.52 26.52 39.44 2.75
3451 3586 0.038251 AAACGAGACTGCGCATCTCA 60.038 50.000 31.01 7.29 42.39 3.27
3452 3587 0.174389 AACGAGACTGCGCATCTCAT 59.826 50.000 31.01 22.43 42.39 2.90
3456 3591 2.285486 CGAGACTGCGCATCTCATTTTC 60.285 50.000 31.01 15.87 42.39 2.29
3461 3600 3.311871 ACTGCGCATCTCATTTTCTCATC 59.688 43.478 12.24 0.00 0.00 2.92
3466 3605 5.441543 CGCATCTCATTTTCTCATCATCAC 58.558 41.667 0.00 0.00 0.00 3.06
3515 3673 7.352719 TCAAAACTTGCAAATACGTTTTTGT 57.647 28.000 25.49 9.17 37.44 2.83
3530 3696 2.656560 TTTGTAGAGAGCGGCTTCTC 57.343 50.000 16.63 16.63 43.16 2.87
3536 3702 1.680735 AGAGAGCGGCTTCTCATGTAG 59.319 52.381 22.51 0.00 44.85 2.74
3539 3705 3.226777 AGAGCGGCTTCTCATGTAGTAT 58.773 45.455 2.97 0.00 35.59 2.12
3541 3707 2.959030 AGCGGCTTCTCATGTAGTATCA 59.041 45.455 0.00 0.00 0.00 2.15
3542 3708 3.005261 AGCGGCTTCTCATGTAGTATCAG 59.995 47.826 0.00 0.00 0.00 2.90
3582 3749 2.162408 GGCTCTACTTGCGCAAAATTCT 59.838 45.455 25.01 6.72 0.00 2.40
3587 3754 6.528072 GCTCTACTTGCGCAAAATTCTAAAAT 59.472 34.615 25.01 2.36 0.00 1.82
3588 3755 7.461938 GCTCTACTTGCGCAAAATTCTAAAATG 60.462 37.037 25.01 10.05 0.00 2.32
3589 3756 5.268107 ACTTGCGCAAAATTCTAAAATGC 57.732 34.783 25.01 0.00 0.00 3.56
3590 3757 4.990426 ACTTGCGCAAAATTCTAAAATGCT 59.010 33.333 25.01 0.00 34.93 3.79
3591 3758 5.466393 ACTTGCGCAAAATTCTAAAATGCTT 59.534 32.000 25.01 0.00 34.93 3.91
3592 3759 5.921004 TGCGCAAAATTCTAAAATGCTTT 57.079 30.435 8.16 0.00 34.93 3.51
3593 3760 6.297694 TGCGCAAAATTCTAAAATGCTTTT 57.702 29.167 8.16 0.00 34.93 2.27
3594 3761 6.723282 TGCGCAAAATTCTAAAATGCTTTTT 58.277 28.000 8.16 14.02 38.56 1.94
3614 3781 4.759516 TTTTTCGAGGGTACTCAATTGC 57.240 40.909 0.00 0.00 44.17 3.56
3615 3782 2.004583 TTCGAGGGTACTCAATTGCG 57.995 50.000 0.00 0.00 44.17 4.85
3616 3783 0.892755 TCGAGGGTACTCAATTGCGT 59.107 50.000 6.30 6.30 44.17 5.24
3617 3784 2.093890 TCGAGGGTACTCAATTGCGTA 58.906 47.619 4.17 4.17 44.17 4.42
3618 3785 2.691526 TCGAGGGTACTCAATTGCGTAT 59.308 45.455 11.23 0.00 44.17 3.06
3619 3786 3.131577 TCGAGGGTACTCAATTGCGTATT 59.868 43.478 11.23 1.62 44.17 1.89
3620 3787 3.869246 CGAGGGTACTCAATTGCGTATTT 59.131 43.478 11.23 1.30 44.17 1.40
3621 3788 4.331717 CGAGGGTACTCAATTGCGTATTTT 59.668 41.667 11.23 0.98 44.17 1.82
3622 3789 5.163794 CGAGGGTACTCAATTGCGTATTTTT 60.164 40.000 11.23 0.00 44.17 1.94
3623 3790 6.036300 CGAGGGTACTCAATTGCGTATTTTTA 59.964 38.462 11.23 0.00 44.17 1.52
3624 3791 7.254658 CGAGGGTACTCAATTGCGTATTTTTAT 60.255 37.037 11.23 0.00 44.17 1.40
3625 3792 8.967664 AGGGTACTCAATTGCGTATTTTTATA 57.032 30.769 11.23 0.00 0.00 0.98
3626 3793 9.052759 AGGGTACTCAATTGCGTATTTTTATAG 57.947 33.333 11.23 0.00 0.00 1.31
3627 3794 9.048446 GGGTACTCAATTGCGTATTTTTATAGA 57.952 33.333 11.23 0.00 0.00 1.98
3631 3798 9.391006 ACTCAATTGCGTATTTTTATAGAAGGA 57.609 29.630 0.00 0.00 0.00 3.36
3632 3799 9.869844 CTCAATTGCGTATTTTTATAGAAGGAG 57.130 33.333 0.00 0.00 0.00 3.69
3633 3800 9.607988 TCAATTGCGTATTTTTATAGAAGGAGA 57.392 29.630 0.00 0.00 0.00 3.71
3636 3803 8.780846 TTGCGTATTTTTATAGAAGGAGAACA 57.219 30.769 0.00 0.00 0.00 3.18
3637 3804 8.780846 TGCGTATTTTTATAGAAGGAGAACAA 57.219 30.769 0.00 0.00 0.00 2.83
3638 3805 8.879759 TGCGTATTTTTATAGAAGGAGAACAAG 58.120 33.333 0.00 0.00 0.00 3.16
3639 3806 9.095065 GCGTATTTTTATAGAAGGAGAACAAGA 57.905 33.333 0.00 0.00 0.00 3.02
3651 3818 9.225436 AGAAGGAGAACAAGATTTACAAGATTC 57.775 33.333 0.00 0.00 0.00 2.52
3652 3819 7.929941 AGGAGAACAAGATTTACAAGATTCC 57.070 36.000 0.00 0.00 0.00 3.01
3653 3820 6.595716 AGGAGAACAAGATTTACAAGATTCCG 59.404 38.462 0.00 0.00 0.00 4.30
3654 3821 6.183309 AGAACAAGATTTACAAGATTCCGC 57.817 37.500 0.00 0.00 0.00 5.54
3655 3822 5.705441 AGAACAAGATTTACAAGATTCCGCA 59.295 36.000 0.00 0.00 0.00 5.69
3656 3823 6.375455 AGAACAAGATTTACAAGATTCCGCAT 59.625 34.615 0.00 0.00 0.00 4.73
3657 3824 5.883661 ACAAGATTTACAAGATTCCGCATG 58.116 37.500 0.00 0.00 0.00 4.06
3658 3825 5.647658 ACAAGATTTACAAGATTCCGCATGA 59.352 36.000 0.00 0.00 0.00 3.07
3659 3826 5.741388 AGATTTACAAGATTCCGCATGAC 57.259 39.130 0.00 0.00 0.00 3.06
3660 3827 4.271049 AGATTTACAAGATTCCGCATGACG 59.729 41.667 0.00 0.00 43.15 4.35
3671 3838 3.903876 GCATGACGATGCGAACATT 57.096 47.368 0.00 0.00 45.50 2.71
3672 3839 1.459756 GCATGACGATGCGAACATTG 58.540 50.000 0.00 0.00 45.50 2.82
3676 3843 2.822306 ACGATGCGAACATTGTCGT 58.178 47.368 0.00 0.00 46.14 4.34
3677 3844 0.438445 ACGATGCGAACATTGTCGTG 59.562 50.000 0.00 0.00 46.14 4.35
3678 3845 0.247262 CGATGCGAACATTGTCGTGG 60.247 55.000 9.33 0.00 43.06 4.94
3679 3846 0.096976 GATGCGAACATTGTCGTGGG 59.903 55.000 9.33 0.00 43.06 4.61
3680 3847 1.305219 ATGCGAACATTGTCGTGGGG 61.305 55.000 9.33 0.00 43.06 4.96
3681 3848 2.686816 GCGAACATTGTCGTGGGGG 61.687 63.158 9.33 0.00 43.06 5.40
3682 3849 2.686816 CGAACATTGTCGTGGGGGC 61.687 63.158 0.00 0.00 36.26 5.80
3683 3850 1.602323 GAACATTGTCGTGGGGGCA 60.602 57.895 0.00 0.00 0.00 5.36
3684 3851 1.862602 GAACATTGTCGTGGGGGCAC 61.863 60.000 0.00 0.00 0.00 5.01
3697 3864 2.836154 GGCACCCACTCCACTCAA 59.164 61.111 0.00 0.00 0.00 3.02
3698 3865 1.380302 GGCACCCACTCCACTCAAT 59.620 57.895 0.00 0.00 0.00 2.57
3699 3866 0.678048 GGCACCCACTCCACTCAATC 60.678 60.000 0.00 0.00 0.00 2.67
3700 3867 0.326264 GCACCCACTCCACTCAATCT 59.674 55.000 0.00 0.00 0.00 2.40
3701 3868 1.555075 GCACCCACTCCACTCAATCTA 59.445 52.381 0.00 0.00 0.00 1.98
3702 3869 2.171448 GCACCCACTCCACTCAATCTAT 59.829 50.000 0.00 0.00 0.00 1.98
3703 3870 3.742640 GCACCCACTCCACTCAATCTATC 60.743 52.174 0.00 0.00 0.00 2.08
3704 3871 3.708631 CACCCACTCCACTCAATCTATCT 59.291 47.826 0.00 0.00 0.00 1.98
3705 3872 4.895889 CACCCACTCCACTCAATCTATCTA 59.104 45.833 0.00 0.00 0.00 1.98
3706 3873 5.010516 CACCCACTCCACTCAATCTATCTAG 59.989 48.000 0.00 0.00 0.00 2.43
3707 3874 5.144100 CCCACTCCACTCAATCTATCTAGT 58.856 45.833 0.00 0.00 0.00 2.57
3708 3875 5.600484 CCCACTCCACTCAATCTATCTAGTT 59.400 44.000 0.00 0.00 0.00 2.24
3709 3876 6.239176 CCCACTCCACTCAATCTATCTAGTTC 60.239 46.154 0.00 0.00 0.00 3.01
3710 3877 6.322456 CCACTCCACTCAATCTATCTAGTTCA 59.678 42.308 0.00 0.00 0.00 3.18
3711 3878 7.147828 CCACTCCACTCAATCTATCTAGTTCAA 60.148 40.741 0.00 0.00 0.00 2.69
3712 3879 8.420222 CACTCCACTCAATCTATCTAGTTCAAT 58.580 37.037 0.00 0.00 0.00 2.57
3713 3880 8.420222 ACTCCACTCAATCTATCTAGTTCAATG 58.580 37.037 0.00 0.00 0.00 2.82
3714 3881 8.311395 TCCACTCAATCTATCTAGTTCAATGT 57.689 34.615 0.00 0.00 0.00 2.71
3715 3882 8.417106 TCCACTCAATCTATCTAGTTCAATGTC 58.583 37.037 0.00 0.00 0.00 3.06
3716 3883 8.420222 CCACTCAATCTATCTAGTTCAATGTCT 58.580 37.037 0.00 0.00 0.00 3.41
3717 3884 9.462174 CACTCAATCTATCTAGTTCAATGTCTC 57.538 37.037 0.00 0.00 0.00 3.36
3718 3885 9.194972 ACTCAATCTATCTAGTTCAATGTCTCA 57.805 33.333 0.00 0.00 0.00 3.27
3719 3886 9.462174 CTCAATCTATCTAGTTCAATGTCTCAC 57.538 37.037 0.00 0.00 0.00 3.51
3720 3887 8.971073 TCAATCTATCTAGTTCAATGTCTCACA 58.029 33.333 0.00 0.00 0.00 3.58
3721 3888 9.591792 CAATCTATCTAGTTCAATGTCTCACAA 57.408 33.333 0.00 0.00 0.00 3.33
3724 3891 9.424319 TCTATCTAGTTCAATGTCTCACAAAAC 57.576 33.333 0.00 0.00 0.00 2.43
3725 3892 6.525121 TCTAGTTCAATGTCTCACAAAACG 57.475 37.500 0.00 0.00 29.87 3.60
3726 3893 6.046593 TCTAGTTCAATGTCTCACAAAACGT 58.953 36.000 0.00 0.00 29.87 3.99
3727 3894 5.560966 AGTTCAATGTCTCACAAAACGTT 57.439 34.783 0.00 0.00 29.87 3.99
3728 3895 5.331902 AGTTCAATGTCTCACAAAACGTTG 58.668 37.500 0.00 0.00 41.58 4.10
3729 3896 3.690422 TCAATGTCTCACAAAACGTTGC 58.310 40.909 0.00 0.00 40.55 4.17
3730 3897 3.127721 TCAATGTCTCACAAAACGTTGCA 59.872 39.130 0.00 0.00 40.55 4.08
3731 3898 3.773860 ATGTCTCACAAAACGTTGCAA 57.226 38.095 0.00 0.00 38.39 4.08
3732 3899 3.773860 TGTCTCACAAAACGTTGCAAT 57.226 38.095 0.59 0.00 38.39 3.56
3733 3900 3.690422 TGTCTCACAAAACGTTGCAATC 58.310 40.909 0.59 0.00 38.39 2.67
3734 3901 3.042887 GTCTCACAAAACGTTGCAATCC 58.957 45.455 0.59 0.00 38.39 3.01
3735 3902 2.948979 TCTCACAAAACGTTGCAATCCT 59.051 40.909 0.59 0.00 38.39 3.24
3736 3903 3.003275 TCTCACAAAACGTTGCAATCCTC 59.997 43.478 0.59 0.00 38.39 3.71
3737 3904 2.034053 TCACAAAACGTTGCAATCCTCC 59.966 45.455 0.59 0.00 38.39 4.30
3738 3905 2.034558 CACAAAACGTTGCAATCCTCCT 59.965 45.455 0.59 0.00 38.39 3.69
3739 3906 3.252215 CACAAAACGTTGCAATCCTCCTA 59.748 43.478 0.59 0.00 38.39 2.94
3740 3907 3.252458 ACAAAACGTTGCAATCCTCCTAC 59.748 43.478 0.59 0.00 38.39 3.18
3741 3908 2.851263 AACGTTGCAATCCTCCTACA 57.149 45.000 0.59 0.00 0.00 2.74
3742 3909 2.094762 ACGTTGCAATCCTCCTACAC 57.905 50.000 0.59 0.00 0.00 2.90
3743 3910 1.338769 ACGTTGCAATCCTCCTACACC 60.339 52.381 0.59 0.00 0.00 4.16
3744 3911 1.369625 GTTGCAATCCTCCTACACCG 58.630 55.000 0.59 0.00 0.00 4.94
3745 3912 0.981183 TTGCAATCCTCCTACACCGT 59.019 50.000 0.00 0.00 0.00 4.83
3746 3913 0.981183 TGCAATCCTCCTACACCGTT 59.019 50.000 0.00 0.00 0.00 4.44
3747 3914 2.181125 TGCAATCCTCCTACACCGTTA 58.819 47.619 0.00 0.00 0.00 3.18
3748 3915 2.167693 TGCAATCCTCCTACACCGTTAG 59.832 50.000 0.00 0.00 0.00 2.34
3749 3916 2.822764 CAATCCTCCTACACCGTTAGC 58.177 52.381 0.00 0.00 0.00 3.09
3750 3917 1.411041 ATCCTCCTACACCGTTAGCC 58.589 55.000 0.00 0.00 0.00 3.93
3751 3918 1.033746 TCCTCCTACACCGTTAGCCG 61.034 60.000 0.00 0.00 0.00 5.52
3752 3919 1.318158 CCTCCTACACCGTTAGCCGT 61.318 60.000 0.00 0.00 33.66 5.68
3753 3920 0.529378 CTCCTACACCGTTAGCCGTT 59.471 55.000 0.00 0.00 33.66 4.44
3754 3921 1.745087 CTCCTACACCGTTAGCCGTTA 59.255 52.381 0.00 0.00 33.66 3.18
3755 3922 2.164219 CTCCTACACCGTTAGCCGTTAA 59.836 50.000 0.00 0.00 33.66 2.01
3756 3923 2.164219 TCCTACACCGTTAGCCGTTAAG 59.836 50.000 0.00 0.00 33.66 1.85
3757 3924 2.094545 CCTACACCGTTAGCCGTTAAGT 60.095 50.000 0.00 0.00 33.66 2.24
3758 3925 2.531522 ACACCGTTAGCCGTTAAGTT 57.468 45.000 0.00 0.00 33.66 2.66
3759 3926 2.407090 ACACCGTTAGCCGTTAAGTTC 58.593 47.619 0.00 0.00 33.66 3.01
3760 3927 1.728425 CACCGTTAGCCGTTAAGTTCC 59.272 52.381 0.00 0.00 33.66 3.62
3761 3928 1.344114 ACCGTTAGCCGTTAAGTTCCA 59.656 47.619 0.00 0.00 33.66 3.53
3762 3929 2.027837 ACCGTTAGCCGTTAAGTTCCAT 60.028 45.455 0.00 0.00 33.66 3.41
3763 3930 3.004862 CCGTTAGCCGTTAAGTTCCATT 58.995 45.455 0.00 0.00 33.66 3.16
3764 3931 3.063045 CCGTTAGCCGTTAAGTTCCATTC 59.937 47.826 0.00 0.00 33.66 2.67
3765 3932 3.930848 CGTTAGCCGTTAAGTTCCATTCT 59.069 43.478 0.00 0.00 0.00 2.40
3766 3933 4.032558 CGTTAGCCGTTAAGTTCCATTCTC 59.967 45.833 0.00 0.00 0.00 2.87
3767 3934 3.983044 AGCCGTTAAGTTCCATTCTCT 57.017 42.857 0.00 0.00 0.00 3.10
3768 3935 6.335777 GTTAGCCGTTAAGTTCCATTCTCTA 58.664 40.000 0.00 0.00 0.00 2.43
3769 3936 5.416271 AGCCGTTAAGTTCCATTCTCTAA 57.584 39.130 0.00 0.00 0.00 2.10
3770 3937 5.990668 AGCCGTTAAGTTCCATTCTCTAAT 58.009 37.500 0.00 0.00 0.00 1.73
3771 3938 6.049790 AGCCGTTAAGTTCCATTCTCTAATC 58.950 40.000 0.00 0.00 0.00 1.75
3772 3939 6.049790 GCCGTTAAGTTCCATTCTCTAATCT 58.950 40.000 0.00 0.00 0.00 2.40
3773 3940 6.201234 GCCGTTAAGTTCCATTCTCTAATCTC 59.799 42.308 0.00 0.00 0.00 2.75
3774 3941 6.702282 CCGTTAAGTTCCATTCTCTAATCTCC 59.298 42.308 0.00 0.00 0.00 3.71
3775 3942 7.418025 CCGTTAAGTTCCATTCTCTAATCTCCT 60.418 40.741 0.00 0.00 0.00 3.69
3776 3943 7.650104 CGTTAAGTTCCATTCTCTAATCTCCTC 59.350 40.741 0.00 0.00 0.00 3.71
3777 3944 8.700973 GTTAAGTTCCATTCTCTAATCTCCTCT 58.299 37.037 0.00 0.00 0.00 3.69
3778 3945 9.937876 TTAAGTTCCATTCTCTAATCTCCTCTA 57.062 33.333 0.00 0.00 0.00 2.43
3779 3946 8.846423 AAGTTCCATTCTCTAATCTCCTCTAA 57.154 34.615 0.00 0.00 0.00 2.10
3780 3947 8.477419 AGTTCCATTCTCTAATCTCCTCTAAG 57.523 38.462 0.00 0.00 0.00 2.18
3781 3948 8.285891 AGTTCCATTCTCTAATCTCCTCTAAGA 58.714 37.037 0.00 0.00 0.00 2.10
3782 3949 9.088987 GTTCCATTCTCTAATCTCCTCTAAGAT 57.911 37.037 0.00 0.00 37.61 2.40
3783 3950 8.877864 TCCATTCTCTAATCTCCTCTAAGATC 57.122 38.462 0.00 0.00 34.90 2.75
3784 3951 8.452056 TCCATTCTCTAATCTCCTCTAAGATCA 58.548 37.037 0.00 0.00 34.90 2.92
3785 3952 8.522830 CCATTCTCTAATCTCCTCTAAGATCAC 58.477 40.741 0.00 0.00 34.90 3.06
3786 3953 9.076781 CATTCTCTAATCTCCTCTAAGATCACA 57.923 37.037 0.00 0.00 34.90 3.58
3787 3954 8.458573 TTCTCTAATCTCCTCTAAGATCACAC 57.541 38.462 0.00 0.00 34.90 3.82
3788 3955 7.001674 TCTCTAATCTCCTCTAAGATCACACC 58.998 42.308 0.00 0.00 34.90 4.16
3789 3956 6.673583 TCTAATCTCCTCTAAGATCACACCA 58.326 40.000 0.00 0.00 34.90 4.17
3790 3957 5.867903 AATCTCCTCTAAGATCACACCAG 57.132 43.478 0.00 0.00 34.90 4.00
3791 3958 3.027412 TCTCCTCTAAGATCACACCAGC 58.973 50.000 0.00 0.00 0.00 4.85
3792 3959 3.030291 CTCCTCTAAGATCACACCAGCT 58.970 50.000 0.00 0.00 0.00 4.24
3793 3960 4.079730 TCTCCTCTAAGATCACACCAGCTA 60.080 45.833 0.00 0.00 0.00 3.32
3794 3961 4.211125 TCCTCTAAGATCACACCAGCTAG 58.789 47.826 0.00 0.00 0.00 3.42
3795 3962 3.320541 CCTCTAAGATCACACCAGCTAGG 59.679 52.174 0.00 0.00 45.67 3.02
3804 3971 4.522971 CCAGCTAGGTCTTTCGCC 57.477 61.111 0.00 0.00 0.00 5.54
3805 3972 1.519455 CCAGCTAGGTCTTTCGCCG 60.519 63.158 0.00 0.00 0.00 6.46
3806 3973 1.215647 CAGCTAGGTCTTTCGCCGT 59.784 57.895 0.00 0.00 0.00 5.68
3807 3974 0.802607 CAGCTAGGTCTTTCGCCGTC 60.803 60.000 0.00 0.00 0.00 4.79
3808 3975 1.214589 GCTAGGTCTTTCGCCGTCA 59.785 57.895 0.00 0.00 0.00 4.35
3809 3976 0.179108 GCTAGGTCTTTCGCCGTCAT 60.179 55.000 0.00 0.00 0.00 3.06
3810 3977 1.739371 GCTAGGTCTTTCGCCGTCATT 60.739 52.381 0.00 0.00 0.00 2.57
3811 3978 2.618053 CTAGGTCTTTCGCCGTCATTT 58.382 47.619 0.00 0.00 0.00 2.32
3812 3979 1.156736 AGGTCTTTCGCCGTCATTTG 58.843 50.000 0.00 0.00 0.00 2.32
3813 3980 0.454452 GGTCTTTCGCCGTCATTTGC 60.454 55.000 0.00 0.00 0.00 3.68
3814 3981 0.517316 GTCTTTCGCCGTCATTTGCT 59.483 50.000 0.00 0.00 0.00 3.91
3815 3982 0.516877 TCTTTCGCCGTCATTTGCTG 59.483 50.000 0.00 0.00 0.00 4.41
3816 3983 1.067199 CTTTCGCCGTCATTTGCTGC 61.067 55.000 0.00 0.00 0.00 5.25
3817 3984 1.514678 TTTCGCCGTCATTTGCTGCT 61.515 50.000 0.00 0.00 0.00 4.24
3818 3985 1.911293 TTCGCCGTCATTTGCTGCTC 61.911 55.000 0.00 0.00 0.00 4.26
3819 3986 2.393768 CGCCGTCATTTGCTGCTCT 61.394 57.895 0.00 0.00 0.00 4.09
3820 3987 1.427020 GCCGTCATTTGCTGCTCTC 59.573 57.895 0.00 0.00 0.00 3.20
3821 3988 1.023513 GCCGTCATTTGCTGCTCTCT 61.024 55.000 0.00 0.00 0.00 3.10
3822 3989 1.446907 CCGTCATTTGCTGCTCTCTT 58.553 50.000 0.00 0.00 0.00 2.85
3823 3990 1.396301 CCGTCATTTGCTGCTCTCTTC 59.604 52.381 0.00 0.00 0.00 2.87
3824 3991 2.344950 CGTCATTTGCTGCTCTCTTCT 58.655 47.619 0.00 0.00 0.00 2.85
3825 3992 2.093941 CGTCATTTGCTGCTCTCTTCTG 59.906 50.000 0.00 0.00 0.00 3.02
3826 3993 3.072944 GTCATTTGCTGCTCTCTTCTGT 58.927 45.455 0.00 0.00 0.00 3.41
3827 3994 3.501445 GTCATTTGCTGCTCTCTTCTGTT 59.499 43.478 0.00 0.00 0.00 3.16
3828 3995 4.692625 GTCATTTGCTGCTCTCTTCTGTTA 59.307 41.667 0.00 0.00 0.00 2.41
3829 3996 5.180117 GTCATTTGCTGCTCTCTTCTGTTAA 59.820 40.000 0.00 0.00 0.00 2.01
3830 3997 5.764686 TCATTTGCTGCTCTCTTCTGTTAAA 59.235 36.000 0.00 0.00 0.00 1.52
3831 3998 6.262944 TCATTTGCTGCTCTCTTCTGTTAAAA 59.737 34.615 0.00 0.00 0.00 1.52
3832 3999 6.449635 TTTGCTGCTCTCTTCTGTTAAAAA 57.550 33.333 0.00 0.00 0.00 1.94
3833 4000 5.424121 TGCTGCTCTCTTCTGTTAAAAAC 57.576 39.130 0.00 0.00 0.00 2.43
3834 4001 5.126067 TGCTGCTCTCTTCTGTTAAAAACT 58.874 37.500 0.00 0.00 0.00 2.66
3835 4002 5.237344 TGCTGCTCTCTTCTGTTAAAAACTC 59.763 40.000 0.00 0.00 0.00 3.01
3836 4003 5.468409 GCTGCTCTCTTCTGTTAAAAACTCT 59.532 40.000 0.00 0.00 0.00 3.24
3837 4004 6.565623 GCTGCTCTCTTCTGTTAAAAACTCTG 60.566 42.308 0.00 0.00 0.00 3.35
3838 4005 5.760253 TGCTCTCTTCTGTTAAAAACTCTGG 59.240 40.000 0.00 0.00 0.00 3.86
3839 4006 5.334491 GCTCTCTTCTGTTAAAAACTCTGGC 60.334 44.000 0.00 0.00 0.00 4.85
3840 4007 5.680619 TCTCTTCTGTTAAAAACTCTGGCA 58.319 37.500 0.00 0.00 0.00 4.92
3841 4008 6.299141 TCTCTTCTGTTAAAAACTCTGGCAT 58.701 36.000 0.00 0.00 0.00 4.40
3842 4009 6.772716 TCTCTTCTGTTAAAAACTCTGGCATT 59.227 34.615 0.00 0.00 0.00 3.56
3843 4010 7.285401 TCTCTTCTGTTAAAAACTCTGGCATTT 59.715 33.333 0.00 0.00 0.00 2.32
3844 4011 7.425606 TCTTCTGTTAAAAACTCTGGCATTTC 58.574 34.615 0.00 0.00 0.00 2.17
3845 4012 5.757886 TCTGTTAAAAACTCTGGCATTTCG 58.242 37.500 0.00 0.00 0.00 3.46
3846 4013 4.295051 TGTTAAAAACTCTGGCATTTCGC 58.705 39.130 0.00 0.00 41.28 4.70
3847 4014 4.037446 TGTTAAAAACTCTGGCATTTCGCT 59.963 37.500 0.00 0.00 41.91 4.93
3848 4015 2.712057 AAAACTCTGGCATTTCGCTG 57.288 45.000 0.00 0.00 41.91 5.18
3849 4016 0.242017 AAACTCTGGCATTTCGCTGC 59.758 50.000 0.00 0.00 41.91 5.25
3850 4017 0.607489 AACTCTGGCATTTCGCTGCT 60.607 50.000 0.00 0.00 41.95 4.24
3851 4018 0.607489 ACTCTGGCATTTCGCTGCTT 60.607 50.000 0.00 0.00 41.95 3.91
3852 4019 0.098376 CTCTGGCATTTCGCTGCTTC 59.902 55.000 0.00 0.00 41.95 3.86
3853 4020 1.138247 CTGGCATTTCGCTGCTTCC 59.862 57.895 0.00 0.00 41.95 3.46
3854 4021 1.588824 CTGGCATTTCGCTGCTTCCA 61.589 55.000 0.00 0.00 41.95 3.53
3855 4022 1.153958 GGCATTTCGCTGCTTCCAC 60.154 57.895 0.00 0.00 41.95 4.02
3856 4023 1.580942 GCATTTCGCTGCTTCCACA 59.419 52.632 0.00 0.00 39.12 4.17
3857 4024 0.039256 GCATTTCGCTGCTTCCACAA 60.039 50.000 0.00 0.00 39.12 3.33
3858 4025 1.689959 CATTTCGCTGCTTCCACAAC 58.310 50.000 0.00 0.00 0.00 3.32
3859 4026 1.001487 CATTTCGCTGCTTCCACAACA 60.001 47.619 0.00 0.00 0.00 3.33
3860 4027 0.380378 TTTCGCTGCTTCCACAACAC 59.620 50.000 0.00 0.00 0.00 3.32
3861 4028 1.444119 TTCGCTGCTTCCACAACACC 61.444 55.000 0.00 0.00 0.00 4.16
3862 4029 2.908073 CGCTGCTTCCACAACACCC 61.908 63.158 0.00 0.00 0.00 4.61
3863 4030 1.827789 GCTGCTTCCACAACACCCA 60.828 57.895 0.00 0.00 0.00 4.51
3864 4031 2.032981 CTGCTTCCACAACACCCAC 58.967 57.895 0.00 0.00 0.00 4.61
3865 4032 1.785041 CTGCTTCCACAACACCCACG 61.785 60.000 0.00 0.00 0.00 4.94
3866 4033 3.030652 CTTCCACAACACCCACGC 58.969 61.111 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.729906 GAGATGCTTTGCAGCCGCG 62.730 63.158 0.00 0.00 46.90 6.46
5 6 1.930908 AAGAGATGCTTTGCAGCCGC 61.931 55.000 4.12 0.00 46.90 6.53
7 8 0.455005 GGAAGAGATGCTTTGCAGCC 59.545 55.000 4.12 0.00 46.90 4.85
8 9 0.455005 GGGAAGAGATGCTTTGCAGC 59.545 55.000 0.00 0.00 45.98 5.25
9 10 2.125773 AGGGAAGAGATGCTTTGCAG 57.874 50.000 0.00 0.00 43.65 4.41
10 11 2.165167 CAAGGGAAGAGATGCTTTGCA 58.835 47.619 0.00 0.00 44.86 4.08
11 12 2.094854 CACAAGGGAAGAGATGCTTTGC 60.095 50.000 0.00 0.00 39.61 3.68
12 13 2.490903 CCACAAGGGAAGAGATGCTTTG 59.509 50.000 0.00 0.00 41.39 2.77
13 14 2.800250 CCACAAGGGAAGAGATGCTTT 58.200 47.619 0.00 0.00 40.01 3.51
14 15 2.503895 CCACAAGGGAAGAGATGCTT 57.496 50.000 0.00 0.00 40.01 3.91
44 45 0.656259 GCGGCGAAAAGGAGGTTATC 59.344 55.000 12.98 0.00 0.00 1.75
188 191 5.316987 TCGATCAATCTATCTACTCCTGCA 58.683 41.667 0.00 0.00 0.00 4.41
235 238 1.805495 GCGAGGTAGGTCGGGAATTTC 60.805 57.143 0.00 0.00 40.44 2.17
247 250 6.830114 AAATATTCGAAGAAAGCGAGGTAG 57.170 37.500 3.35 0.00 45.90 3.18
248 251 7.201582 GGAAAAATATTCGAAGAAAGCGAGGTA 60.202 37.037 3.35 0.00 45.90 3.08
278 281 1.985116 GAGAGGGGACGAAGCAGGT 60.985 63.158 0.00 0.00 0.00 4.00
335 338 1.529438 GACCAGTCAAATCGAACGCAA 59.471 47.619 0.00 0.00 0.00 4.85
358 361 3.511146 TCTGGGAAAACAATCTGCCATTC 59.489 43.478 0.00 0.00 0.00 2.67
384 387 6.439375 GGTTCAGATAAACCTAAACCCCAAAT 59.561 38.462 0.00 0.00 44.45 2.32
387 390 4.264038 GGGTTCAGATAAACCTAAACCCCA 60.264 45.833 9.49 0.00 46.63 4.96
402 405 0.606604 GGACTGCGTTAGGGTTCAGA 59.393 55.000 0.00 0.00 0.00 3.27
444 455 1.125633 AGAACGGTGTACACAAGGGT 58.874 50.000 26.51 14.07 0.00 4.34
556 567 1.766494 TACCAGGAAATCCGCGACTA 58.234 50.000 8.23 0.00 42.08 2.59
607 618 0.253160 TACAGGAGATGGGCCTTGGT 60.253 55.000 4.53 0.00 32.12 3.67
706 717 2.598589 TCCGTCCGTAATCGACAAAAG 58.401 47.619 0.00 0.00 39.71 2.27
738 749 3.996363 CAGCAGCAGTATTCACAACTGTA 59.004 43.478 0.00 0.00 45.01 2.74
806 822 9.662947 AATACTTTGCTAACTAACTAAATCGGT 57.337 29.630 0.00 0.00 0.00 4.69
819 835 9.463443 AATGAGAAACAACAATACTTTGCTAAC 57.537 29.630 0.00 0.00 36.22 2.34
826 842 8.143193 TGCAATGAATGAGAAACAACAATACTT 58.857 29.630 0.00 0.00 0.00 2.24
827 843 7.660112 TGCAATGAATGAGAAACAACAATACT 58.340 30.769 0.00 0.00 0.00 2.12
853 872 2.615774 CATCGGCCGTATGCATTGA 58.384 52.632 27.15 1.58 43.89 2.57
862 881 2.746277 GAACCAAGCATCGGCCGT 60.746 61.111 27.15 10.00 42.56 5.68
923 945 8.624776 CCAATAAGAAGAGAACAAAAGAACTGT 58.375 33.333 0.00 0.00 0.00 3.55
990 1013 2.874014 TCCATGTCCATGTCTGCAAAA 58.126 42.857 6.53 0.00 37.11 2.44
1121 1144 0.179127 ATGTCCATCAGTCGACTGCG 60.179 55.000 35.48 27.73 43.46 5.18
1412 1441 4.142600 GCTGCTCGTAAATGATTGAAGGTT 60.143 41.667 0.00 0.00 0.00 3.50
1424 1453 4.574828 AGAAAAAGTTCAGCTGCTCGTAAA 59.425 37.500 9.47 0.00 36.09 2.01
1426 1455 3.728845 AGAAAAAGTTCAGCTGCTCGTA 58.271 40.909 9.47 0.00 36.09 3.43
1907 1942 2.375110 CACAAGCAATCACGTGTGTTC 58.625 47.619 16.51 4.10 42.68 3.18
1914 1949 0.950836 TCCCAACACAAGCAATCACG 59.049 50.000 0.00 0.00 0.00 4.35
1967 2002 8.918961 ATCGAACAATAGTCTTAAGAGAACAG 57.081 34.615 5.12 0.00 32.66 3.16
1988 2023 8.234136 TCTGGCTTTAGATTCTTAAGTATCGA 57.766 34.615 14.28 8.26 0.00 3.59
2026 2063 6.199937 AGATGTGAGTCATTTTGCATAACC 57.800 37.500 0.00 0.00 36.83 2.85
2072 2168 5.082251 ACGGAGGGAGTACTTGAATAAAC 57.918 43.478 0.00 0.00 0.00 2.01
2146 2242 4.457603 AGTGAACAAGCACACACTAAAACA 59.542 37.500 0.00 0.00 40.96 2.83
2160 2256 2.797156 CGGACTGAACTGAGTGAACAAG 59.203 50.000 0.00 0.00 0.00 3.16
2161 2257 2.167693 ACGGACTGAACTGAGTGAACAA 59.832 45.455 0.00 0.00 0.00 2.83
2172 2268 7.924412 TCAATATGGACTAAATACGGACTGAAC 59.076 37.037 0.00 0.00 0.00 3.18
2185 2281 9.535170 TGTTTTGGGTATTTCAATATGGACTAA 57.465 29.630 0.00 0.00 0.00 2.24
2203 2299 7.487829 CCGTTCACAAATATAAGATGTTTTGGG 59.512 37.037 0.00 0.00 34.54 4.12
2312 2410 6.461640 AGAGCTCCCAAGAATTCAATTTTTG 58.538 36.000 10.93 6.44 35.00 2.44
2333 2432 2.549754 ACCTTTGCACATTGACGAAGAG 59.450 45.455 10.91 6.04 0.00 2.85
2363 2463 2.666344 GCCCGTGTAAATTTTCGTGGAC 60.666 50.000 0.00 0.00 0.00 4.02
2541 2651 1.477700 GCTGAAATGTTGGGCTATGCA 59.522 47.619 0.00 0.00 0.00 3.96
2569 2679 4.032703 ACTTATTTGCAATTAGCTGCGG 57.967 40.909 0.00 0.00 45.74 5.69
2606 2716 1.322442 ACTCAAAGCCACCAGAAAGC 58.678 50.000 0.00 0.00 0.00 3.51
2613 2723 8.451908 AGATATACATAAAACTCAAAGCCACC 57.548 34.615 0.00 0.00 0.00 4.61
2642 2752 4.322198 CCTGTTTTGCCTGCAAGAACATAT 60.322 41.667 21.42 0.00 36.90 1.78
2738 2849 1.119684 GGGGGAGCAACAGTGTTTTT 58.880 50.000 5.57 0.00 0.00 1.94
2739 2850 0.261696 AGGGGGAGCAACAGTGTTTT 59.738 50.000 5.57 0.00 0.00 2.43
2740 2851 0.261696 AAGGGGGAGCAACAGTGTTT 59.738 50.000 5.57 0.00 0.00 2.83
2741 2852 0.468029 CAAGGGGGAGCAACAGTGTT 60.468 55.000 1.64 1.64 0.00 3.32
2742 2853 1.151450 CAAGGGGGAGCAACAGTGT 59.849 57.895 0.00 0.00 0.00 3.55
2743 2854 0.400213 TACAAGGGGGAGCAACAGTG 59.600 55.000 0.00 0.00 0.00 3.66
2744 2855 1.145571 TTACAAGGGGGAGCAACAGT 58.854 50.000 0.00 0.00 0.00 3.55
2745 2856 1.202879 TGTTACAAGGGGGAGCAACAG 60.203 52.381 0.00 0.00 0.00 3.16
2746 2857 0.847373 TGTTACAAGGGGGAGCAACA 59.153 50.000 0.00 0.00 0.00 3.33
2747 2858 1.611977 GTTGTTACAAGGGGGAGCAAC 59.388 52.381 0.00 0.00 0.00 4.17
2792 2903 1.065102 GAACGCATCAGCATCTGCAAT 59.935 47.619 4.79 0.00 45.16 3.56
2892 3003 6.183360 ACACAACACAAACTGTCTTCATAGTG 60.183 38.462 0.00 0.00 30.29 2.74
2922 3033 3.166489 AGGCAGTAATAAGCGAGACAC 57.834 47.619 0.00 0.00 0.00 3.67
2924 3035 3.552294 GTGAAGGCAGTAATAAGCGAGAC 59.448 47.826 0.00 0.00 0.00 3.36
2925 3036 3.447586 AGTGAAGGCAGTAATAAGCGAGA 59.552 43.478 0.00 0.00 0.00 4.04
2927 3038 3.887621 AGTGAAGGCAGTAATAAGCGA 57.112 42.857 0.00 0.00 0.00 4.93
2928 3039 3.684788 ACAAGTGAAGGCAGTAATAAGCG 59.315 43.478 0.00 0.00 0.00 4.68
2956 3076 6.183360 TGCTATGCATTGCTTACTAGTAGTGA 60.183 38.462 28.73 3.71 31.71 3.41
3034 3154 0.520404 AGAGCTCACGCAAAATGCAG 59.480 50.000 17.77 0.00 45.36 4.41
3049 3169 0.915364 AAGGTGAATGGGGAGAGAGC 59.085 55.000 0.00 0.00 0.00 4.09
3050 3170 2.093235 GTCAAGGTGAATGGGGAGAGAG 60.093 54.545 0.00 0.00 0.00 3.20
3051 3171 1.909302 GTCAAGGTGAATGGGGAGAGA 59.091 52.381 0.00 0.00 0.00 3.10
3054 3174 0.613260 TCGTCAAGGTGAATGGGGAG 59.387 55.000 0.00 0.00 0.00 4.30
3055 3175 0.613260 CTCGTCAAGGTGAATGGGGA 59.387 55.000 0.00 0.00 0.00 4.81
3056 3176 0.392998 CCTCGTCAAGGTGAATGGGG 60.393 60.000 0.00 0.00 40.67 4.96
3071 3199 3.058450 CAAATATCAGCTCAGCTCCTCG 58.942 50.000 0.00 0.00 36.40 4.63
3095 3223 0.459585 GAGTACTTCGCAATGCCCGA 60.460 55.000 0.00 0.00 0.00 5.14
3096 3224 1.429148 GGAGTACTTCGCAATGCCCG 61.429 60.000 0.00 0.00 0.00 6.13
3161 3294 2.819348 GCAATCAAACCAGGAAGGGACT 60.819 50.000 0.00 0.00 43.89 3.85
3163 3296 1.428912 AGCAATCAAACCAGGAAGGGA 59.571 47.619 0.00 0.00 43.89 4.20
3172 3305 2.223782 TGAGTGTGCAAGCAATCAAACC 60.224 45.455 5.13 0.00 39.95 3.27
3223 3358 0.179015 TAGGTTGGACGGCAAGCAAA 60.179 50.000 0.00 0.00 33.00 3.68
3269 3404 1.928503 CCAAACATGCCAATGCGAATC 59.071 47.619 0.00 0.00 41.78 2.52
3274 3409 1.894881 AAACCCAAACATGCCAATGC 58.105 45.000 0.00 0.00 37.29 3.56
3296 3431 1.142060 ACACACAAAGATGGGTCCGAA 59.858 47.619 0.00 0.00 39.66 4.30
3298 3433 0.874390 CACACACAAAGATGGGTCCG 59.126 55.000 0.00 0.00 39.66 4.79
3303 3438 0.661187 GCGCACACACACAAAGATGG 60.661 55.000 0.30 0.00 0.00 3.51
3325 3460 0.722469 CACTTCATTCGTGCACGCAC 60.722 55.000 33.63 12.17 43.01 5.34
3326 3461 1.569003 CACTTCATTCGTGCACGCA 59.431 52.632 33.63 25.13 39.60 5.24
3327 3462 4.422506 CACTTCATTCGTGCACGC 57.577 55.556 33.63 0.00 39.60 5.34
3357 3492 3.985019 TTGTAAGCATCCCGTTCCTTA 57.015 42.857 0.00 0.00 0.00 2.69
3405 3540 3.009723 CTCGATGCACCACCTGTTAATT 58.990 45.455 0.00 0.00 0.00 1.40
3406 3541 2.632377 CTCGATGCACCACCTGTTAAT 58.368 47.619 0.00 0.00 0.00 1.40
3407 3542 1.943968 GCTCGATGCACCACCTGTTAA 60.944 52.381 0.00 0.00 42.31 2.01
3430 3565 0.038251 AGATGCGCAGTCTCGTTTCA 60.038 50.000 18.32 0.00 0.00 2.69
3435 3570 1.284657 AAATGAGATGCGCAGTCTCG 58.715 50.000 28.51 0.00 43.95 4.04
3444 3579 6.431278 CAGTGATGATGAGAAAATGAGATGC 58.569 40.000 0.00 0.00 0.00 3.91
3445 3580 6.766467 TCCAGTGATGATGAGAAAATGAGATG 59.234 38.462 0.00 0.00 0.00 2.90
3448 3583 6.766467 TGATCCAGTGATGATGAGAAAATGAG 59.234 38.462 0.00 0.00 0.00 2.90
3449 3584 6.541278 GTGATCCAGTGATGATGAGAAAATGA 59.459 38.462 0.00 0.00 0.00 2.57
3450 3585 6.317893 TGTGATCCAGTGATGATGAGAAAATG 59.682 38.462 0.00 0.00 0.00 2.32
3451 3586 6.420638 TGTGATCCAGTGATGATGAGAAAAT 58.579 36.000 0.00 0.00 0.00 1.82
3452 3587 5.807909 TGTGATCCAGTGATGATGAGAAAA 58.192 37.500 0.00 0.00 0.00 2.29
3456 3591 4.667519 TCTGTGATCCAGTGATGATGAG 57.332 45.455 9.98 0.00 42.19 2.90
3476 3615 9.206870 TGCAAGTTTTGAAATAAAAGGATCATC 57.793 29.630 0.00 0.00 0.00 2.92
3512 3670 1.545841 TGAGAAGCCGCTCTCTACAA 58.454 50.000 16.08 0.19 42.11 2.41
3515 3673 1.769026 ACATGAGAAGCCGCTCTCTA 58.231 50.000 16.08 7.43 42.11 2.43
3593 3760 3.187637 CGCAATTGAGTACCCTCGAAAAA 59.812 43.478 10.34 0.00 40.85 1.94
3594 3761 2.739913 CGCAATTGAGTACCCTCGAAAA 59.260 45.455 10.34 0.00 40.85 2.29
3595 3762 2.289195 ACGCAATTGAGTACCCTCGAAA 60.289 45.455 13.54 0.00 40.85 3.46
3596 3763 1.274167 ACGCAATTGAGTACCCTCGAA 59.726 47.619 13.54 0.00 40.85 3.71
3597 3764 0.892755 ACGCAATTGAGTACCCTCGA 59.107 50.000 13.54 0.00 40.85 4.04
3598 3765 2.572191 TACGCAATTGAGTACCCTCG 57.428 50.000 16.84 7.06 40.85 4.63
3599 3766 5.813080 AAAATACGCAATTGAGTACCCTC 57.187 39.130 22.03 0.00 38.27 4.30
3600 3767 7.875327 ATAAAAATACGCAATTGAGTACCCT 57.125 32.000 22.03 8.90 33.35 4.34
3601 3768 9.048446 TCTATAAAAATACGCAATTGAGTACCC 57.952 33.333 22.03 0.00 33.35 3.69
3605 3772 9.391006 TCCTTCTATAAAAATACGCAATTGAGT 57.609 29.630 18.94 18.94 0.00 3.41
3606 3773 9.869844 CTCCTTCTATAAAAATACGCAATTGAG 57.130 33.333 10.34 8.94 0.00 3.02
3607 3774 9.607988 TCTCCTTCTATAAAAATACGCAATTGA 57.392 29.630 10.34 0.00 0.00 2.57
3610 3777 9.391006 TGTTCTCCTTCTATAAAAATACGCAAT 57.609 29.630 0.00 0.00 0.00 3.56
3611 3778 8.780846 TGTTCTCCTTCTATAAAAATACGCAA 57.219 30.769 0.00 0.00 0.00 4.85
3612 3779 8.780846 TTGTTCTCCTTCTATAAAAATACGCA 57.219 30.769 0.00 0.00 0.00 5.24
3613 3780 9.095065 TCTTGTTCTCCTTCTATAAAAATACGC 57.905 33.333 0.00 0.00 0.00 4.42
3625 3792 9.225436 GAATCTTGTAAATCTTGTTCTCCTTCT 57.775 33.333 0.00 0.00 0.00 2.85
3626 3793 8.454894 GGAATCTTGTAAATCTTGTTCTCCTTC 58.545 37.037 0.00 0.00 0.00 3.46
3627 3794 7.119846 CGGAATCTTGTAAATCTTGTTCTCCTT 59.880 37.037 0.00 0.00 0.00 3.36
3628 3795 6.595716 CGGAATCTTGTAAATCTTGTTCTCCT 59.404 38.462 0.00 0.00 0.00 3.69
3629 3796 6.675728 GCGGAATCTTGTAAATCTTGTTCTCC 60.676 42.308 0.00 0.00 0.00 3.71
3630 3797 6.128282 TGCGGAATCTTGTAAATCTTGTTCTC 60.128 38.462 0.00 0.00 0.00 2.87
3631 3798 5.705441 TGCGGAATCTTGTAAATCTTGTTCT 59.295 36.000 0.00 0.00 0.00 3.01
3632 3799 5.938322 TGCGGAATCTTGTAAATCTTGTTC 58.062 37.500 0.00 0.00 0.00 3.18
3633 3800 5.957842 TGCGGAATCTTGTAAATCTTGTT 57.042 34.783 0.00 0.00 0.00 2.83
3634 3801 5.647658 TCATGCGGAATCTTGTAAATCTTGT 59.352 36.000 0.00 0.00 0.00 3.16
3635 3802 5.967674 GTCATGCGGAATCTTGTAAATCTTG 59.032 40.000 0.00 0.00 0.00 3.02
3636 3803 5.220662 CGTCATGCGGAATCTTGTAAATCTT 60.221 40.000 2.16 0.00 36.85 2.40
3637 3804 4.271049 CGTCATGCGGAATCTTGTAAATCT 59.729 41.667 2.16 0.00 36.85 2.40
3638 3805 4.270084 TCGTCATGCGGAATCTTGTAAATC 59.730 41.667 9.16 0.00 41.72 2.17
3639 3806 4.188462 TCGTCATGCGGAATCTTGTAAAT 58.812 39.130 9.16 0.00 41.72 1.40
3640 3807 3.591023 TCGTCATGCGGAATCTTGTAAA 58.409 40.909 9.16 0.00 41.72 2.01
3641 3808 3.239587 TCGTCATGCGGAATCTTGTAA 57.760 42.857 9.16 0.00 41.72 2.41
3642 3809 2.951457 TCGTCATGCGGAATCTTGTA 57.049 45.000 9.16 0.00 41.72 2.41
3643 3810 1.935873 CATCGTCATGCGGAATCTTGT 59.064 47.619 9.16 0.00 41.72 3.16
3644 3811 1.333524 GCATCGTCATGCGGAATCTTG 60.334 52.381 9.16 0.00 46.06 3.02
3645 3812 0.940126 GCATCGTCATGCGGAATCTT 59.060 50.000 9.16 0.00 46.06 2.40
3646 3813 2.609825 GCATCGTCATGCGGAATCT 58.390 52.632 9.16 0.00 46.06 2.40
3654 3821 2.697363 GACAATGTTCGCATCGTCATG 58.303 47.619 0.00 0.00 40.34 3.07
3655 3822 1.324435 CGACAATGTTCGCATCGTCAT 59.676 47.619 0.00 0.00 40.57 3.06
3656 3823 0.713329 CGACAATGTTCGCATCGTCA 59.287 50.000 0.00 0.00 40.57 4.35
3657 3824 0.713883 ACGACAATGTTCGCATCGTC 59.286 50.000 0.00 0.00 43.06 4.20
3658 3825 0.438445 CACGACAATGTTCGCATCGT 59.562 50.000 0.00 0.00 43.06 3.73
3659 3826 0.247262 CCACGACAATGTTCGCATCG 60.247 55.000 0.00 0.00 43.06 3.84
3660 3827 0.096976 CCCACGACAATGTTCGCATC 59.903 55.000 0.00 0.00 43.06 3.91
3661 3828 1.305219 CCCCACGACAATGTTCGCAT 61.305 55.000 0.00 0.00 43.06 4.73
3662 3829 1.963855 CCCCACGACAATGTTCGCA 60.964 57.895 0.00 0.00 43.06 5.10
3663 3830 2.686816 CCCCCACGACAATGTTCGC 61.687 63.158 0.00 0.00 43.06 4.70
3664 3831 2.686816 GCCCCCACGACAATGTTCG 61.687 63.158 0.00 0.00 44.87 3.95
3665 3832 1.602323 TGCCCCCACGACAATGTTC 60.602 57.895 0.00 0.00 0.00 3.18
3666 3833 1.901464 GTGCCCCCACGACAATGTT 60.901 57.895 0.00 0.00 31.34 2.71
3667 3834 2.282180 GTGCCCCCACGACAATGT 60.282 61.111 0.00 0.00 31.34 2.71
3668 3835 3.061848 GGTGCCCCCACGACAATG 61.062 66.667 0.00 0.00 43.00 2.82
3678 3845 4.035102 GAGTGGAGTGGGTGCCCC 62.035 72.222 4.59 3.42 45.71 5.80
3679 3846 2.142292 ATTGAGTGGAGTGGGTGCCC 62.142 60.000 0.00 0.00 0.00 5.36
3680 3847 0.678048 GATTGAGTGGAGTGGGTGCC 60.678 60.000 0.00 0.00 0.00 5.01
3681 3848 0.326264 AGATTGAGTGGAGTGGGTGC 59.674 55.000 0.00 0.00 0.00 5.01
3682 3849 3.708631 AGATAGATTGAGTGGAGTGGGTG 59.291 47.826 0.00 0.00 0.00 4.61
3683 3850 4.000928 AGATAGATTGAGTGGAGTGGGT 57.999 45.455 0.00 0.00 0.00 4.51
3684 3851 5.144100 ACTAGATAGATTGAGTGGAGTGGG 58.856 45.833 0.00 0.00 0.00 4.61
3685 3852 6.322456 TGAACTAGATAGATTGAGTGGAGTGG 59.678 42.308 0.00 0.00 0.00 4.00
3686 3853 7.340122 TGAACTAGATAGATTGAGTGGAGTG 57.660 40.000 0.00 0.00 0.00 3.51
3687 3854 7.962995 TTGAACTAGATAGATTGAGTGGAGT 57.037 36.000 0.00 0.00 0.00 3.85
3688 3855 8.420222 ACATTGAACTAGATAGATTGAGTGGAG 58.580 37.037 0.00 0.00 0.00 3.86
3689 3856 8.311395 ACATTGAACTAGATAGATTGAGTGGA 57.689 34.615 0.00 0.00 0.00 4.02
3690 3857 8.420222 AGACATTGAACTAGATAGATTGAGTGG 58.580 37.037 0.00 0.00 0.00 4.00
3691 3858 9.462174 GAGACATTGAACTAGATAGATTGAGTG 57.538 37.037 0.00 0.00 0.00 3.51
3692 3859 9.194972 TGAGACATTGAACTAGATAGATTGAGT 57.805 33.333 0.00 0.00 0.00 3.41
3693 3860 9.462174 GTGAGACATTGAACTAGATAGATTGAG 57.538 37.037 0.00 0.00 0.00 3.02
3694 3861 8.971073 TGTGAGACATTGAACTAGATAGATTGA 58.029 33.333 0.00 0.00 0.00 2.57
3695 3862 9.591792 TTGTGAGACATTGAACTAGATAGATTG 57.408 33.333 0.00 0.00 0.00 2.67
3698 3865 9.424319 GTTTTGTGAGACATTGAACTAGATAGA 57.576 33.333 0.00 0.00 0.00 1.98
3699 3866 8.376203 CGTTTTGTGAGACATTGAACTAGATAG 58.624 37.037 0.00 0.00 0.00 2.08
3700 3867 7.870954 ACGTTTTGTGAGACATTGAACTAGATA 59.129 33.333 0.00 0.00 0.00 1.98
3701 3868 6.706270 ACGTTTTGTGAGACATTGAACTAGAT 59.294 34.615 0.00 0.00 0.00 1.98
3702 3869 6.046593 ACGTTTTGTGAGACATTGAACTAGA 58.953 36.000 0.00 0.00 0.00 2.43
3703 3870 6.287107 ACGTTTTGTGAGACATTGAACTAG 57.713 37.500 0.00 0.00 0.00 2.57
3704 3871 6.482835 CAACGTTTTGTGAGACATTGAACTA 58.517 36.000 0.00 0.00 0.00 2.24
3705 3872 5.331902 CAACGTTTTGTGAGACATTGAACT 58.668 37.500 0.00 0.00 0.00 3.01
3706 3873 4.027702 GCAACGTTTTGTGAGACATTGAAC 60.028 41.667 0.00 0.00 34.90 3.18
3707 3874 4.101942 GCAACGTTTTGTGAGACATTGAA 58.898 39.130 0.00 0.00 34.90 2.69
3708 3875 3.127721 TGCAACGTTTTGTGAGACATTGA 59.872 39.130 0.00 0.00 34.90 2.57
3709 3876 3.433709 TGCAACGTTTTGTGAGACATTG 58.566 40.909 0.00 0.00 34.90 2.82
3710 3877 3.773860 TGCAACGTTTTGTGAGACATT 57.226 38.095 0.00 0.00 34.90 2.71
3711 3878 3.773860 TTGCAACGTTTTGTGAGACAT 57.226 38.095 0.00 0.00 34.90 3.06
3712 3879 3.488384 GGATTGCAACGTTTTGTGAGACA 60.488 43.478 0.00 0.00 34.90 3.41
3713 3880 3.042887 GGATTGCAACGTTTTGTGAGAC 58.957 45.455 0.00 0.00 34.90 3.36
3714 3881 2.948979 AGGATTGCAACGTTTTGTGAGA 59.051 40.909 0.00 0.00 34.90 3.27
3715 3882 3.300009 GAGGATTGCAACGTTTTGTGAG 58.700 45.455 0.00 0.00 34.90 3.51
3716 3883 2.034053 GGAGGATTGCAACGTTTTGTGA 59.966 45.455 0.00 0.00 34.90 3.58
3717 3884 2.034558 AGGAGGATTGCAACGTTTTGTG 59.965 45.455 0.00 0.00 34.90 3.33
3718 3885 2.306847 AGGAGGATTGCAACGTTTTGT 58.693 42.857 0.00 0.00 34.90 2.83
3719 3886 3.252215 TGTAGGAGGATTGCAACGTTTTG 59.748 43.478 0.00 0.00 35.62 2.44
3720 3887 3.252458 GTGTAGGAGGATTGCAACGTTTT 59.748 43.478 0.00 0.00 0.00 2.43
3721 3888 2.812011 GTGTAGGAGGATTGCAACGTTT 59.188 45.455 0.00 0.00 0.00 3.60
3722 3889 2.423577 GTGTAGGAGGATTGCAACGTT 58.576 47.619 0.00 0.00 0.00 3.99
3723 3890 1.338769 GGTGTAGGAGGATTGCAACGT 60.339 52.381 0.00 0.00 0.00 3.99
3724 3891 1.369625 GGTGTAGGAGGATTGCAACG 58.630 55.000 0.00 0.00 0.00 4.10
3725 3892 1.338769 ACGGTGTAGGAGGATTGCAAC 60.339 52.381 0.00 0.00 0.00 4.17
3726 3893 0.981183 ACGGTGTAGGAGGATTGCAA 59.019 50.000 0.00 0.00 0.00 4.08
3727 3894 0.981183 AACGGTGTAGGAGGATTGCA 59.019 50.000 0.00 0.00 0.00 4.08
3728 3895 2.822764 CTAACGGTGTAGGAGGATTGC 58.177 52.381 0.00 0.00 0.00 3.56
3729 3896 2.483188 GGCTAACGGTGTAGGAGGATTG 60.483 54.545 0.00 0.00 0.00 2.67
3730 3897 1.761198 GGCTAACGGTGTAGGAGGATT 59.239 52.381 0.00 0.00 0.00 3.01
3731 3898 1.411041 GGCTAACGGTGTAGGAGGAT 58.589 55.000 0.00 0.00 0.00 3.24
3732 3899 1.033746 CGGCTAACGGTGTAGGAGGA 61.034 60.000 0.00 0.00 39.42 3.71
3733 3900 1.436336 CGGCTAACGGTGTAGGAGG 59.564 63.158 0.00 0.00 39.42 4.30
3734 3901 1.745087 TAACGGCTAACGGTGTAGGAG 59.255 52.381 0.00 0.00 45.97 3.69
3735 3902 1.832883 TAACGGCTAACGGTGTAGGA 58.167 50.000 0.00 0.00 45.97 2.94
3736 3903 2.094545 ACTTAACGGCTAACGGTGTAGG 60.095 50.000 0.00 0.00 45.97 3.18
3737 3904 3.221964 ACTTAACGGCTAACGGTGTAG 57.778 47.619 0.00 0.00 45.97 2.74
3738 3905 3.574614 GAACTTAACGGCTAACGGTGTA 58.425 45.455 0.00 0.00 45.97 2.90
3739 3906 2.407090 GAACTTAACGGCTAACGGTGT 58.593 47.619 0.00 0.00 45.97 4.16
3740 3907 1.728425 GGAACTTAACGGCTAACGGTG 59.272 52.381 0.00 0.00 45.97 4.94
3744 3911 5.176592 AGAGAATGGAACTTAACGGCTAAC 58.823 41.667 0.00 0.00 0.00 2.34
3745 3912 5.416271 AGAGAATGGAACTTAACGGCTAA 57.584 39.130 0.00 0.00 0.00 3.09
3746 3913 6.534475 TTAGAGAATGGAACTTAACGGCTA 57.466 37.500 0.00 0.00 0.00 3.93
3747 3914 3.983044 AGAGAATGGAACTTAACGGCT 57.017 42.857 0.00 0.00 0.00 5.52
3748 3915 6.049790 AGATTAGAGAATGGAACTTAACGGC 58.950 40.000 0.00 0.00 0.00 5.68
3749 3916 6.702282 GGAGATTAGAGAATGGAACTTAACGG 59.298 42.308 0.00 0.00 0.00 4.44
3750 3917 7.493367 AGGAGATTAGAGAATGGAACTTAACG 58.507 38.462 0.00 0.00 0.00 3.18
3751 3918 8.700973 AGAGGAGATTAGAGAATGGAACTTAAC 58.299 37.037 0.00 0.00 0.00 2.01
3752 3919 8.846423 AGAGGAGATTAGAGAATGGAACTTAA 57.154 34.615 0.00 0.00 0.00 1.85
3753 3920 9.937876 TTAGAGGAGATTAGAGAATGGAACTTA 57.062 33.333 0.00 0.00 0.00 2.24
3754 3921 8.846423 TTAGAGGAGATTAGAGAATGGAACTT 57.154 34.615 0.00 0.00 0.00 2.66
3755 3922 8.285891 TCTTAGAGGAGATTAGAGAATGGAACT 58.714 37.037 0.00 0.00 0.00 3.01
3756 3923 8.472007 TCTTAGAGGAGATTAGAGAATGGAAC 57.528 38.462 0.00 0.00 0.00 3.62
3757 3924 9.308000 GATCTTAGAGGAGATTAGAGAATGGAA 57.692 37.037 0.00 0.00 36.54 3.53
3758 3925 8.452056 TGATCTTAGAGGAGATTAGAGAATGGA 58.548 37.037 0.00 0.00 36.54 3.41
3759 3926 8.522830 GTGATCTTAGAGGAGATTAGAGAATGG 58.477 40.741 0.00 0.00 36.54 3.16
3760 3927 9.076781 TGTGATCTTAGAGGAGATTAGAGAATG 57.923 37.037 0.00 0.00 36.54 2.67
3761 3928 9.077885 GTGTGATCTTAGAGGAGATTAGAGAAT 57.922 37.037 0.00 0.00 36.54 2.40
3762 3929 7.504238 GGTGTGATCTTAGAGGAGATTAGAGAA 59.496 40.741 0.00 0.00 36.54 2.87
3763 3930 7.001674 GGTGTGATCTTAGAGGAGATTAGAGA 58.998 42.308 0.00 0.00 36.54 3.10
3764 3931 6.775142 TGGTGTGATCTTAGAGGAGATTAGAG 59.225 42.308 0.00 0.00 36.54 2.43
3765 3932 6.673583 TGGTGTGATCTTAGAGGAGATTAGA 58.326 40.000 0.00 0.00 36.54 2.10
3766 3933 6.516527 GCTGGTGTGATCTTAGAGGAGATTAG 60.517 46.154 0.00 0.00 36.54 1.73
3767 3934 5.303078 GCTGGTGTGATCTTAGAGGAGATTA 59.697 44.000 0.00 0.00 36.54 1.75
3768 3935 4.100808 GCTGGTGTGATCTTAGAGGAGATT 59.899 45.833 0.00 0.00 36.54 2.40
3769 3936 3.640967 GCTGGTGTGATCTTAGAGGAGAT 59.359 47.826 0.00 0.00 39.04 2.75
3770 3937 3.027412 GCTGGTGTGATCTTAGAGGAGA 58.973 50.000 0.00 0.00 0.00 3.71
3771 3938 3.030291 AGCTGGTGTGATCTTAGAGGAG 58.970 50.000 0.00 0.00 0.00 3.69
3772 3939 3.107402 AGCTGGTGTGATCTTAGAGGA 57.893 47.619 0.00 0.00 0.00 3.71
3773 3940 3.320541 CCTAGCTGGTGTGATCTTAGAGG 59.679 52.174 0.00 0.00 0.00 3.69
3774 3941 4.582701 CCTAGCTGGTGTGATCTTAGAG 57.417 50.000 0.00 0.00 0.00 2.43
3787 3954 1.519455 CGGCGAAAGACCTAGCTGG 60.519 63.158 0.00 0.00 42.93 4.85
3788 3955 0.802607 GACGGCGAAAGACCTAGCTG 60.803 60.000 16.62 0.00 41.40 4.24
3789 3956 1.248785 TGACGGCGAAAGACCTAGCT 61.249 55.000 16.62 0.00 33.32 3.32
3790 3957 0.179108 ATGACGGCGAAAGACCTAGC 60.179 55.000 16.62 0.00 33.32 3.42
3791 3958 2.295253 AATGACGGCGAAAGACCTAG 57.705 50.000 16.62 0.00 33.32 3.02
3792 3959 2.343101 CAAATGACGGCGAAAGACCTA 58.657 47.619 16.62 0.00 33.32 3.08
3793 3960 1.156736 CAAATGACGGCGAAAGACCT 58.843 50.000 16.62 0.00 33.32 3.85
3794 3961 0.454452 GCAAATGACGGCGAAAGACC 60.454 55.000 16.62 0.00 33.32 3.85
3795 3962 0.517316 AGCAAATGACGGCGAAAGAC 59.483 50.000 16.62 0.00 34.54 3.01
3796 3963 0.516877 CAGCAAATGACGGCGAAAGA 59.483 50.000 16.62 0.00 34.54 2.52
3797 3964 1.067199 GCAGCAAATGACGGCGAAAG 61.067 55.000 16.62 0.00 34.54 2.62
3798 3965 1.081509 GCAGCAAATGACGGCGAAA 60.082 52.632 16.62 0.11 34.54 3.46
3799 3966 1.911293 GAGCAGCAAATGACGGCGAA 61.911 55.000 16.62 0.57 34.54 4.70
3800 3967 2.358615 AGCAGCAAATGACGGCGA 60.359 55.556 16.62 0.00 34.54 5.54
3801 3968 2.099062 GAGCAGCAAATGACGGCG 59.901 61.111 4.80 4.80 34.54 6.46
3802 3969 1.023513 AGAGAGCAGCAAATGACGGC 61.024 55.000 0.00 0.00 0.00 5.68
3803 3970 1.396301 GAAGAGAGCAGCAAATGACGG 59.604 52.381 0.00 0.00 0.00 4.79
3804 3971 2.093941 CAGAAGAGAGCAGCAAATGACG 59.906 50.000 0.00 0.00 0.00 4.35
3805 3972 3.072944 ACAGAAGAGAGCAGCAAATGAC 58.927 45.455 0.00 0.00 0.00 3.06
3806 3973 3.413846 ACAGAAGAGAGCAGCAAATGA 57.586 42.857 0.00 0.00 0.00 2.57
3807 3974 5.618056 TTAACAGAAGAGAGCAGCAAATG 57.382 39.130 0.00 0.00 0.00 2.32
3808 3975 6.639632 TTTTAACAGAAGAGAGCAGCAAAT 57.360 33.333 0.00 0.00 0.00 2.32
3809 3976 6.095440 AGTTTTTAACAGAAGAGAGCAGCAAA 59.905 34.615 0.00 0.00 0.00 3.68
3810 3977 5.590259 AGTTTTTAACAGAAGAGAGCAGCAA 59.410 36.000 0.00 0.00 0.00 3.91
3811 3978 5.126067 AGTTTTTAACAGAAGAGAGCAGCA 58.874 37.500 0.00 0.00 0.00 4.41
3812 3979 5.468409 AGAGTTTTTAACAGAAGAGAGCAGC 59.532 40.000 0.00 0.00 0.00 5.25
3813 3980 6.073331 CCAGAGTTTTTAACAGAAGAGAGCAG 60.073 42.308 0.00 0.00 0.00 4.24
3814 3981 5.760253 CCAGAGTTTTTAACAGAAGAGAGCA 59.240 40.000 0.00 0.00 0.00 4.26
3815 3982 5.334491 GCCAGAGTTTTTAACAGAAGAGAGC 60.334 44.000 0.00 0.00 0.00 4.09
3816 3983 5.760253 TGCCAGAGTTTTTAACAGAAGAGAG 59.240 40.000 0.00 0.00 0.00 3.20
3817 3984 5.680619 TGCCAGAGTTTTTAACAGAAGAGA 58.319 37.500 0.00 0.00 0.00 3.10
3818 3985 6.566197 ATGCCAGAGTTTTTAACAGAAGAG 57.434 37.500 0.00 0.00 0.00 2.85
3819 3986 6.959639 AATGCCAGAGTTTTTAACAGAAGA 57.040 33.333 0.00 0.00 0.00 2.87
3820 3987 6.360681 CGAAATGCCAGAGTTTTTAACAGAAG 59.639 38.462 0.00 0.00 0.00 2.85
3821 3988 6.205784 CGAAATGCCAGAGTTTTTAACAGAA 58.794 36.000 0.00 0.00 0.00 3.02
3822 3989 5.757886 CGAAATGCCAGAGTTTTTAACAGA 58.242 37.500 0.00 0.00 0.00 3.41
3823 3990 4.382754 GCGAAATGCCAGAGTTTTTAACAG 59.617 41.667 0.00 0.00 37.76 3.16
3824 3991 4.295051 GCGAAATGCCAGAGTTTTTAACA 58.705 39.130 0.00 0.00 37.76 2.41
3825 3992 4.886009 GCGAAATGCCAGAGTTTTTAAC 57.114 40.909 0.00 0.00 37.76 2.01
3838 4005 0.039256 TTGTGGAAGCAGCGAAATGC 60.039 50.000 0.00 0.00 46.88 3.56
3839 4006 1.001487 TGTTGTGGAAGCAGCGAAATG 60.001 47.619 0.00 0.00 0.00 2.32
3840 4007 1.001378 GTGTTGTGGAAGCAGCGAAAT 60.001 47.619 0.00 0.00 0.00 2.17
3841 4008 0.380378 GTGTTGTGGAAGCAGCGAAA 59.620 50.000 0.00 0.00 0.00 3.46
3842 4009 1.444119 GGTGTTGTGGAAGCAGCGAA 61.444 55.000 0.00 0.00 0.00 4.70
3843 4010 1.891919 GGTGTTGTGGAAGCAGCGA 60.892 57.895 0.00 0.00 0.00 4.93
3844 4011 2.639286 GGTGTTGTGGAAGCAGCG 59.361 61.111 0.00 0.00 0.00 5.18
3845 4012 1.827789 TGGGTGTTGTGGAAGCAGC 60.828 57.895 0.00 0.00 0.00 5.25
3846 4013 1.785041 CGTGGGTGTTGTGGAAGCAG 61.785 60.000 0.00 0.00 0.00 4.24
3847 4014 1.821759 CGTGGGTGTTGTGGAAGCA 60.822 57.895 0.00 0.00 0.00 3.91
3848 4015 3.030652 CGTGGGTGTTGTGGAAGC 58.969 61.111 0.00 0.00 0.00 3.86
3849 4016 3.030652 GCGTGGGTGTTGTGGAAG 58.969 61.111 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.