Multiple sequence alignment - TraesCS3A01G179500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G179500 chr3A 100.000 4610 0 0 1 4610 207841339 207845948 0.000000e+00 8514.0
1 TraesCS3A01G179500 chr3A 77.168 346 55 18 3058 3391 207830547 207830880 3.660000e-41 180.0
2 TraesCS3A01G179500 chr3A 88.421 95 11 0 3486 3580 207831078 207831172 1.050000e-21 115.0
3 TraesCS3A01G179500 chr3D 91.413 1246 46 16 2616 3847 170236999 170238197 0.000000e+00 1652.0
4 TraesCS3A01G179500 chr3D 88.931 1048 56 25 407 1430 170233891 170234902 0.000000e+00 1238.0
5 TraesCS3A01G179500 chr3D 87.748 808 58 16 1598 2379 170235039 170235831 0.000000e+00 905.0
6 TraesCS3A01G179500 chr3D 93.201 603 27 5 4018 4610 170238577 170239175 0.000000e+00 874.0
7 TraesCS3A01G179500 chr3D 89.091 220 20 2 2384 2603 170236585 170236800 2.110000e-68 270.0
8 TraesCS3A01G179500 chr3D 77.713 341 59 13 3058 3391 170203393 170203723 4.710000e-45 193.0
9 TraesCS3A01G179500 chr3D 89.474 95 10 0 3486 3580 170204008 170204102 2.250000e-23 121.0
10 TraesCS3A01G179500 chr3D 92.000 75 5 1 339 413 481930326 481930399 2.270000e-18 104.0
11 TraesCS3A01G179500 chr3D 89.333 75 7 1 339 413 442815589 442815516 4.910000e-15 93.5
12 TraesCS3A01G179500 chr3D 89.231 65 7 0 349 413 589671350 589671414 1.060000e-11 82.4
13 TraesCS3A01G179500 chr3D 81.633 98 5 6 3929 4026 170238196 170238280 8.280000e-08 69.4
14 TraesCS3A01G179500 chr3B 87.968 1014 59 36 2743 3736 245508679 245509649 0.000000e+00 1138.0
15 TraesCS3A01G179500 chr3B 86.908 993 52 28 339 1308 245505779 245506716 0.000000e+00 1042.0
16 TraesCS3A01G179500 chr3B 87.315 607 36 11 1808 2413 245507626 245508192 0.000000e+00 656.0
17 TraesCS3A01G179500 chr3B 82.533 229 30 7 1 225 246291261 246291039 4.710000e-45 193.0
18 TraesCS3A01G179500 chr3B 92.800 125 9 0 3058 3182 245358571 245358695 1.020000e-41 182.0
19 TraesCS3A01G179500 chr3B 92.523 107 7 1 1325 1430 245506770 245506876 7.990000e-33 152.0
20 TraesCS3A01G179500 chr3B 92.784 97 5 2 3841 3936 273528534 273528439 6.220000e-29 139.0
21 TraesCS3A01G179500 chr3B 92.784 97 5 2 3841 3936 388271504 388271599 6.220000e-29 139.0
22 TraesCS3A01G179500 chr3B 89.474 95 10 0 3486 3580 245359417 245359511 2.250000e-23 121.0
23 TraesCS3A01G179500 chr3B 89.247 93 3 1 2616 2708 245508419 245508504 4.880000e-20 110.0
24 TraesCS3A01G179500 chr3B 96.296 54 1 1 360 413 395354388 395354440 2.280000e-13 87.9
25 TraesCS3A01G179500 chr4A 82.809 477 65 10 4099 4565 34050923 34051392 1.190000e-110 411.0
26 TraesCS3A01G179500 chr4A 94.737 57 2 1 4039 4094 34050840 34050896 2.280000e-13 87.9
27 TraesCS3A01G179500 chr4D 82.600 477 66 11 4099 4565 432771035 432771504 5.550000e-109 405.0
28 TraesCS3A01G179500 chr4D 85.232 237 29 5 1 236 440410159 440410390 5.960000e-59 239.0
29 TraesCS3A01G179500 chr4D 92.784 97 5 2 3841 3936 24988388 24988483 6.220000e-29 139.0
30 TraesCS3A01G179500 chr4D 94.737 57 2 1 4039 4094 432770952 432771008 2.280000e-13 87.9
31 TraesCS3A01G179500 chr4B 83.628 226 34 2 1 225 328107827 328107604 4.670000e-50 209.0
32 TraesCS3A01G179500 chr5D 82.403 233 33 7 1 229 338658474 338658702 3.640000e-46 196.0
33 TraesCS3A01G179500 chr5D 81.579 228 36 5 1 225 220999727 220999951 2.830000e-42 183.0
34 TraesCS3A01G179500 chr2A 82.629 213 31 6 1 211 777353575 777353783 2.830000e-42 183.0
35 TraesCS3A01G179500 chr2A 81.498 227 37 5 1 225 695296298 695296075 1.020000e-41 182.0
36 TraesCS3A01G179500 chr2A 86.585 82 9 2 339 420 750267756 750267677 6.350000e-14 89.8
37 TraesCS3A01G179500 chrUn 81.498 227 36 6 1 225 190882870 190883092 1.020000e-41 182.0
38 TraesCS3A01G179500 chr6B 81.498 227 36 6 1 225 246506514 246506736 1.020000e-41 182.0
39 TraesCS3A01G179500 chr6B 92.784 97 5 2 3841 3936 582025842 582025937 6.220000e-29 139.0
40 TraesCS3A01G179500 chr6B 87.500 72 8 1 339 410 26195271 26195341 1.060000e-11 82.4
41 TraesCS3A01G179500 chr2B 92.373 118 9 0 3065 3182 776315308 776315191 7.930000e-38 169.0
42 TraesCS3A01G179500 chr2B 90.667 75 6 1 339 413 5225146 5225219 1.060000e-16 99.0
43 TraesCS3A01G179500 chr7D 94.505 91 4 1 3846 3936 163086671 163086582 6.220000e-29 139.0
44 TraesCS3A01G179500 chr7D 89.024 82 7 2 339 420 618679127 618679206 2.930000e-17 100.0
45 TraesCS3A01G179500 chr6D 93.617 94 5 1 3843 3936 132853876 132853784 6.220000e-29 139.0
46 TraesCS3A01G179500 chr5B 92.708 96 5 2 3843 3936 133894924 133894829 2.240000e-28 137.0
47 TraesCS3A01G179500 chr2D 91.919 99 6 2 3840 3936 566199400 566199498 2.240000e-28 137.0
48 TraesCS3A01G179500 chr2D 88.732 71 6 2 352 422 19557607 19557539 8.220000e-13 86.1
49 TraesCS3A01G179500 chr7A 93.407 91 6 0 3846 3936 193600022 193599932 8.050000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G179500 chr3A 207841339 207845948 4609 False 8514.000000 8514 100.0000 1 4610 1 chr3A.!!$F1 4609
1 TraesCS3A01G179500 chr3D 170233891 170239175 5284 False 834.733333 1652 88.6695 407 4610 6 chr3D.!!$F4 4203
2 TraesCS3A01G179500 chr3B 245505779 245509649 3870 False 619.600000 1138 88.7922 339 3736 5 chr3B.!!$F4 3397
3 TraesCS3A01G179500 chr4A 34050840 34051392 552 False 249.450000 411 88.7730 4039 4565 2 chr4A.!!$F1 526
4 TraesCS3A01G179500 chr4D 432770952 432771504 552 False 246.450000 405 88.6685 4039 4565 2 chr4D.!!$F3 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 884 0.030908 CCTACAGCTAGCCGCACTAC 59.969 60.0 12.13 0.0 42.61 2.73 F
909 938 0.039074 CGGCGGCCATACTTCTCTAG 60.039 60.0 20.71 0.0 0.00 2.43 F
1448 1551 0.593773 GCACAAACCGTTGACGCATT 60.594 50.0 0.00 0.0 38.20 3.56 F
1862 2412 0.669318 GTCGGTCTGGATGTTTGCGA 60.669 55.0 0.00 0.0 0.00 5.10 F
3030 4728 1.179152 TCTGATGAACGGAGCGGTTA 58.821 50.0 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2776 4468 0.178767 CCCTCATCTGACAATCGGCA 59.821 55.000 0.00 0.00 0.00 5.69 R
2876 4568 0.038599 ATGCTGATGAGGTGGTGCAA 59.961 50.000 0.00 0.00 34.07 4.08 R
2972 4668 0.389948 CACCGAACACAGGGCTAGAC 60.390 60.000 0.00 0.00 0.00 2.59 R
3199 4897 1.133976 GGGGAACAGGATCATGAGGTG 60.134 57.143 15.42 0.78 0.00 4.00 R
4510 6569 0.036732 CCCAAGCACCTAGACAGCAA 59.963 55.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.699703 TTTATAAGTTCCCTTTGTAATTTGTGC 57.300 29.630 0.00 0.00 31.89 4.57
29 30 4.600692 AGTTCCCTTTGTAATTTGTGCC 57.399 40.909 0.00 0.00 0.00 5.01
30 31 3.964031 AGTTCCCTTTGTAATTTGTGCCA 59.036 39.130 0.00 0.00 0.00 4.92
31 32 4.407296 AGTTCCCTTTGTAATTTGTGCCAA 59.593 37.500 0.00 0.00 0.00 4.52
32 33 5.104735 AGTTCCCTTTGTAATTTGTGCCAAA 60.105 36.000 3.33 3.33 0.00 3.28
33 34 5.559148 TCCCTTTGTAATTTGTGCCAAAT 57.441 34.783 7.18 7.18 0.00 2.32
34 35 5.934781 TCCCTTTGTAATTTGTGCCAAATT 58.065 33.333 21.60 21.60 34.55 1.82
35 36 5.994668 TCCCTTTGTAATTTGTGCCAAATTC 59.005 36.000 21.55 15.82 32.64 2.17
36 37 5.997129 CCCTTTGTAATTTGTGCCAAATTCT 59.003 36.000 21.55 8.67 32.64 2.40
37 38 6.073112 CCCTTTGTAATTTGTGCCAAATTCTG 60.073 38.462 21.55 12.33 32.64 3.02
38 39 6.705381 CCTTTGTAATTTGTGCCAAATTCTGA 59.295 34.615 21.55 8.70 32.64 3.27
39 40 7.307337 CCTTTGTAATTTGTGCCAAATTCTGAC 60.307 37.037 21.55 16.78 32.64 3.51
40 41 5.537188 TGTAATTTGTGCCAAATTCTGACC 58.463 37.500 21.55 11.25 32.64 4.02
41 42 4.686191 AATTTGTGCCAAATTCTGACCA 57.314 36.364 15.79 0.00 0.00 4.02
42 43 4.895668 ATTTGTGCCAAATTCTGACCAT 57.104 36.364 7.18 0.00 0.00 3.55
43 44 3.663995 TTGTGCCAAATTCTGACCATG 57.336 42.857 0.00 0.00 0.00 3.66
44 45 1.894466 TGTGCCAAATTCTGACCATGG 59.106 47.619 11.19 11.19 0.00 3.66
45 46 2.170166 GTGCCAAATTCTGACCATGGA 58.830 47.619 21.47 0.00 32.82 3.41
46 47 2.762327 GTGCCAAATTCTGACCATGGAT 59.238 45.455 21.47 1.98 32.82 3.41
47 48 3.196254 GTGCCAAATTCTGACCATGGATT 59.804 43.478 21.47 4.02 32.82 3.01
48 49 3.839490 TGCCAAATTCTGACCATGGATTT 59.161 39.130 21.47 10.64 32.82 2.17
49 50 5.022122 TGCCAAATTCTGACCATGGATTTA 58.978 37.500 21.47 0.00 32.82 1.40
50 51 5.483231 TGCCAAATTCTGACCATGGATTTAA 59.517 36.000 21.47 7.76 32.82 1.52
51 52 5.812127 GCCAAATTCTGACCATGGATTTAAC 59.188 40.000 21.47 5.31 32.82 2.01
52 53 6.351286 GCCAAATTCTGACCATGGATTTAACT 60.351 38.462 21.47 0.00 32.82 2.24
53 54 7.147915 GCCAAATTCTGACCATGGATTTAACTA 60.148 37.037 21.47 0.00 32.82 2.24
54 55 8.748412 CCAAATTCTGACCATGGATTTAACTAA 58.252 33.333 21.47 1.85 32.82 2.24
94 95 8.978564 ATGTCACGAAAAATTATATTGTTGCA 57.021 26.923 0.00 0.00 0.00 4.08
95 96 8.978564 TGTCACGAAAAATTATATTGTTGCAT 57.021 26.923 0.00 0.00 0.00 3.96
96 97 9.416794 TGTCACGAAAAATTATATTGTTGCATT 57.583 25.926 0.00 0.00 0.00 3.56
97 98 9.885743 GTCACGAAAAATTATATTGTTGCATTC 57.114 29.630 0.00 0.00 0.00 2.67
98 99 8.793472 TCACGAAAAATTATATTGTTGCATTCG 58.207 29.630 8.26 8.26 41.01 3.34
99 100 8.582930 CACGAAAAATTATATTGTTGCATTCGT 58.417 29.630 9.36 9.36 46.70 3.85
100 101 9.776158 ACGAAAAATTATATTGTTGCATTCGTA 57.224 25.926 12.55 0.00 44.76 3.43
108 109 5.878332 ATTGTTGCATTCGTATCTGAACA 57.122 34.783 0.00 0.00 0.00 3.18
109 110 5.878332 TTGTTGCATTCGTATCTGAACAT 57.122 34.783 0.00 0.00 0.00 2.71
110 111 6.976636 TTGTTGCATTCGTATCTGAACATA 57.023 33.333 0.00 0.00 0.00 2.29
111 112 6.588348 TGTTGCATTCGTATCTGAACATAG 57.412 37.500 0.00 0.00 0.00 2.23
112 113 6.106003 TGTTGCATTCGTATCTGAACATAGT 58.894 36.000 0.00 0.00 0.00 2.12
113 114 6.593770 TGTTGCATTCGTATCTGAACATAGTT 59.406 34.615 0.00 0.00 0.00 2.24
114 115 7.119116 TGTTGCATTCGTATCTGAACATAGTTT 59.881 33.333 0.00 0.00 0.00 2.66
115 116 7.609760 TGCATTCGTATCTGAACATAGTTTT 57.390 32.000 0.00 0.00 0.00 2.43
116 117 7.684670 TGCATTCGTATCTGAACATAGTTTTC 58.315 34.615 0.00 0.00 0.00 2.29
117 118 7.333174 TGCATTCGTATCTGAACATAGTTTTCA 59.667 33.333 0.00 0.00 0.00 2.69
118 119 8.175069 GCATTCGTATCTGAACATAGTTTTCAA 58.825 33.333 0.00 0.00 32.61 2.69
215 216 8.040716 ACAAAAGGAACTAATAAATCAGGACG 57.959 34.615 0.00 0.00 38.49 4.79
216 217 7.120726 ACAAAAGGAACTAATAAATCAGGACGG 59.879 37.037 0.00 0.00 38.49 4.79
217 218 5.291905 AGGAACTAATAAATCAGGACGGG 57.708 43.478 0.00 0.00 36.02 5.28
218 219 4.720273 AGGAACTAATAAATCAGGACGGGT 59.280 41.667 0.00 0.00 36.02 5.28
219 220 4.814771 GGAACTAATAAATCAGGACGGGTG 59.185 45.833 0.00 0.00 0.00 4.61
220 221 5.425630 GAACTAATAAATCAGGACGGGTGT 58.574 41.667 0.00 0.00 0.00 4.16
221 222 6.407299 GGAACTAATAAATCAGGACGGGTGTA 60.407 42.308 0.00 0.00 0.00 2.90
222 223 6.158023 ACTAATAAATCAGGACGGGTGTAG 57.842 41.667 0.00 0.00 0.00 2.74
223 224 5.659971 ACTAATAAATCAGGACGGGTGTAGT 59.340 40.000 0.00 0.00 0.00 2.73
224 225 6.835488 ACTAATAAATCAGGACGGGTGTAGTA 59.165 38.462 0.00 0.00 0.00 1.82
225 226 3.881937 AAATCAGGACGGGTGTAGTAC 57.118 47.619 0.00 0.00 0.00 2.73
226 227 2.822707 ATCAGGACGGGTGTAGTACT 57.177 50.000 0.00 0.00 31.85 2.73
227 228 3.939740 ATCAGGACGGGTGTAGTACTA 57.060 47.619 0.00 0.00 30.29 1.82
228 229 2.991250 TCAGGACGGGTGTAGTACTAC 58.009 52.381 23.58 23.58 30.29 2.73
229 230 2.573462 TCAGGACGGGTGTAGTACTACT 59.427 50.000 28.56 12.19 37.00 2.57
230 231 2.941720 CAGGACGGGTGTAGTACTACTC 59.058 54.545 28.56 24.98 37.00 2.59
231 232 2.843113 AGGACGGGTGTAGTACTACTCT 59.157 50.000 28.56 13.17 37.00 3.24
232 233 3.265479 AGGACGGGTGTAGTACTACTCTT 59.735 47.826 28.56 14.24 37.00 2.85
233 234 4.013050 GGACGGGTGTAGTACTACTCTTT 58.987 47.826 28.56 15.55 37.00 2.52
234 235 4.460731 GGACGGGTGTAGTACTACTCTTTT 59.539 45.833 28.56 15.26 37.00 2.27
235 236 5.392487 GGACGGGTGTAGTACTACTCTTTTC 60.392 48.000 28.56 20.54 37.00 2.29
236 237 5.072741 ACGGGTGTAGTACTACTCTTTTCA 58.927 41.667 28.56 8.52 37.00 2.69
237 238 5.536161 ACGGGTGTAGTACTACTCTTTTCAA 59.464 40.000 28.56 7.79 37.00 2.69
238 239 5.860716 CGGGTGTAGTACTACTCTTTTCAAC 59.139 44.000 28.56 17.45 37.00 3.18
239 240 5.860716 GGGTGTAGTACTACTCTTTTCAACG 59.139 44.000 28.56 0.00 37.00 4.10
240 241 6.442112 GGTGTAGTACTACTCTTTTCAACGT 58.558 40.000 28.56 0.00 37.00 3.99
241 242 6.920210 GGTGTAGTACTACTCTTTTCAACGTT 59.080 38.462 28.56 0.00 37.00 3.99
242 243 7.096312 GGTGTAGTACTACTCTTTTCAACGTTG 60.096 40.741 28.56 22.35 37.00 4.10
243 244 7.645340 GTGTAGTACTACTCTTTTCAACGTTGA 59.355 37.037 26.53 26.53 37.00 3.18
244 245 8.355169 TGTAGTACTACTCTTTTCAACGTTGAT 58.645 33.333 30.10 17.15 35.71 2.57
245 246 7.639162 AGTACTACTCTTTTCAACGTTGATG 57.361 36.000 30.10 21.73 37.00 3.07
246 247 5.924475 ACTACTCTTTTCAACGTTGATGG 57.076 39.130 30.10 21.32 37.00 3.51
247 248 5.365619 ACTACTCTTTTCAACGTTGATGGT 58.634 37.500 30.10 22.88 37.00 3.55
248 249 5.820947 ACTACTCTTTTCAACGTTGATGGTT 59.179 36.000 30.10 15.25 37.00 3.67
249 250 4.920376 ACTCTTTTCAACGTTGATGGTTG 58.080 39.130 30.10 21.11 44.68 3.77
250 251 3.701241 TCTTTTCAACGTTGATGGTTGC 58.299 40.909 30.10 0.00 43.37 4.17
251 252 3.380004 TCTTTTCAACGTTGATGGTTGCT 59.620 39.130 30.10 0.00 43.37 3.91
252 253 2.772568 TTCAACGTTGATGGTTGCTG 57.227 45.000 30.10 0.59 43.37 4.41
253 254 0.310543 TCAACGTTGATGGTTGCTGC 59.689 50.000 26.53 0.00 43.37 5.25
254 255 0.311790 CAACGTTGATGGTTGCTGCT 59.688 50.000 23.90 0.00 38.41 4.24
255 256 0.593128 AACGTTGATGGTTGCTGCTC 59.407 50.000 0.00 0.00 0.00 4.26
256 257 0.250467 ACGTTGATGGTTGCTGCTCT 60.250 50.000 0.00 0.00 0.00 4.09
257 258 0.167470 CGTTGATGGTTGCTGCTCTG 59.833 55.000 0.00 0.00 0.00 3.35
258 259 1.527034 GTTGATGGTTGCTGCTCTGA 58.473 50.000 0.00 0.00 0.00 3.27
259 260 2.089980 GTTGATGGTTGCTGCTCTGAT 58.910 47.619 0.00 0.00 0.00 2.90
260 261 1.746470 TGATGGTTGCTGCTCTGATG 58.254 50.000 0.00 0.00 0.00 3.07
261 262 1.003928 TGATGGTTGCTGCTCTGATGT 59.996 47.619 0.00 0.00 0.00 3.06
262 263 1.400846 GATGGTTGCTGCTCTGATGTG 59.599 52.381 0.00 0.00 0.00 3.21
263 264 0.109153 TGGTTGCTGCTCTGATGTGT 59.891 50.000 0.00 0.00 0.00 3.72
264 265 1.242076 GGTTGCTGCTCTGATGTGTT 58.758 50.000 0.00 0.00 0.00 3.32
265 266 1.068748 GGTTGCTGCTCTGATGTGTTG 60.069 52.381 0.00 0.00 0.00 3.33
266 267 1.068748 GTTGCTGCTCTGATGTGTTGG 60.069 52.381 0.00 0.00 0.00 3.77
267 268 0.109153 TGCTGCTCTGATGTGTTGGT 59.891 50.000 0.00 0.00 0.00 3.67
268 269 0.801251 GCTGCTCTGATGTGTTGGTC 59.199 55.000 0.00 0.00 0.00 4.02
269 270 1.446907 CTGCTCTGATGTGTTGGTCC 58.553 55.000 0.00 0.00 0.00 4.46
270 271 1.002888 CTGCTCTGATGTGTTGGTCCT 59.997 52.381 0.00 0.00 0.00 3.85
271 272 1.421268 TGCTCTGATGTGTTGGTCCTT 59.579 47.619 0.00 0.00 0.00 3.36
272 273 2.158623 TGCTCTGATGTGTTGGTCCTTT 60.159 45.455 0.00 0.00 0.00 3.11
273 274 2.227388 GCTCTGATGTGTTGGTCCTTTG 59.773 50.000 0.00 0.00 0.00 2.77
274 275 2.816087 CTCTGATGTGTTGGTCCTTTGG 59.184 50.000 0.00 0.00 0.00 3.28
275 276 2.441375 TCTGATGTGTTGGTCCTTTGGA 59.559 45.455 0.00 0.00 0.00 3.53
276 277 2.816087 CTGATGTGTTGGTCCTTTGGAG 59.184 50.000 0.00 0.00 29.39 3.86
284 285 2.579410 GGTCCTTTGGAGCCTTAACA 57.421 50.000 4.60 0.00 43.62 2.41
285 286 2.160205 GGTCCTTTGGAGCCTTAACAC 58.840 52.381 4.60 0.00 43.62 3.32
286 287 2.488347 GGTCCTTTGGAGCCTTAACACA 60.488 50.000 4.60 0.00 43.62 3.72
287 288 3.219281 GTCCTTTGGAGCCTTAACACAA 58.781 45.455 0.00 0.00 29.39 3.33
288 289 3.826729 GTCCTTTGGAGCCTTAACACAAT 59.173 43.478 0.00 0.00 29.39 2.71
289 290 3.826157 TCCTTTGGAGCCTTAACACAATG 59.174 43.478 0.00 0.00 0.00 2.82
290 291 3.826157 CCTTTGGAGCCTTAACACAATGA 59.174 43.478 0.00 0.00 0.00 2.57
291 292 4.321230 CCTTTGGAGCCTTAACACAATGAC 60.321 45.833 0.00 0.00 0.00 3.06
292 293 3.788227 TGGAGCCTTAACACAATGACT 57.212 42.857 0.00 0.00 0.00 3.41
293 294 4.098914 TGGAGCCTTAACACAATGACTT 57.901 40.909 0.00 0.00 0.00 3.01
294 295 4.469657 TGGAGCCTTAACACAATGACTTT 58.530 39.130 0.00 0.00 0.00 2.66
295 296 4.518970 TGGAGCCTTAACACAATGACTTTC 59.481 41.667 0.00 0.00 0.00 2.62
296 297 4.762251 GGAGCCTTAACACAATGACTTTCT 59.238 41.667 0.00 0.00 0.00 2.52
297 298 5.335191 GGAGCCTTAACACAATGACTTTCTG 60.335 44.000 0.00 0.00 0.00 3.02
298 299 5.376625 AGCCTTAACACAATGACTTTCTGA 58.623 37.500 0.00 0.00 0.00 3.27
299 300 5.239525 AGCCTTAACACAATGACTTTCTGAC 59.760 40.000 0.00 0.00 0.00 3.51
300 301 5.239525 GCCTTAACACAATGACTTTCTGACT 59.760 40.000 0.00 0.00 0.00 3.41
301 302 6.662616 CCTTAACACAATGACTTTCTGACTG 58.337 40.000 0.00 0.00 0.00 3.51
302 303 6.260936 CCTTAACACAATGACTTTCTGACTGT 59.739 38.462 0.00 0.00 0.00 3.55
303 304 5.741388 AACACAATGACTTTCTGACTGTC 57.259 39.130 0.00 0.00 0.00 3.51
304 305 5.028549 ACACAATGACTTTCTGACTGTCT 57.971 39.130 9.51 0.00 0.00 3.41
305 306 6.161855 ACACAATGACTTTCTGACTGTCTA 57.838 37.500 9.51 0.00 0.00 2.59
306 307 6.763355 ACACAATGACTTTCTGACTGTCTAT 58.237 36.000 9.51 1.89 0.00 1.98
307 308 7.896811 ACACAATGACTTTCTGACTGTCTATA 58.103 34.615 9.51 0.00 0.00 1.31
308 309 8.367911 ACACAATGACTTTCTGACTGTCTATAA 58.632 33.333 9.51 0.00 0.00 0.98
309 310 9.376075 CACAATGACTTTCTGACTGTCTATAAT 57.624 33.333 9.51 0.00 0.00 1.28
324 325 9.760077 ACTGTCTATAATAATAAGGTTTGTCCG 57.240 33.333 0.00 0.00 41.99 4.79
325 326 9.204570 CTGTCTATAATAATAAGGTTTGTCCGG 57.795 37.037 0.00 0.00 41.99 5.14
326 327 7.658575 TGTCTATAATAATAAGGTTTGTCCGGC 59.341 37.037 0.00 0.00 41.99 6.13
327 328 7.876582 GTCTATAATAATAAGGTTTGTCCGGCT 59.123 37.037 0.00 0.00 41.99 5.52
328 329 8.092687 TCTATAATAATAAGGTTTGTCCGGCTC 58.907 37.037 0.00 0.00 41.99 4.70
329 330 2.124277 AATAAGGTTTGTCCGGCTCC 57.876 50.000 0.00 0.00 41.99 4.70
330 331 0.107848 ATAAGGTTTGTCCGGCTCCG 60.108 55.000 0.00 0.48 41.99 4.63
331 332 1.186917 TAAGGTTTGTCCGGCTCCGA 61.187 55.000 10.28 0.00 42.83 4.55
332 333 1.838073 AAGGTTTGTCCGGCTCCGAT 61.838 55.000 10.28 0.00 42.83 4.18
333 334 0.974010 AGGTTTGTCCGGCTCCGATA 60.974 55.000 10.28 0.00 42.83 2.92
334 335 0.108041 GGTTTGTCCGGCTCCGATAA 60.108 55.000 10.28 0.00 42.83 1.75
335 336 1.676615 GGTTTGTCCGGCTCCGATAAA 60.677 52.381 10.28 5.38 42.83 1.40
336 337 1.664151 GTTTGTCCGGCTCCGATAAAG 59.336 52.381 10.28 0.00 42.83 1.85
337 338 0.177141 TTGTCCGGCTCCGATAAAGG 59.823 55.000 10.28 0.00 42.83 3.11
338 339 0.685131 TGTCCGGCTCCGATAAAGGA 60.685 55.000 10.28 0.00 42.83 3.36
353 354 7.678598 TCCGATAAAGGAGGATGGTTTATAGAT 59.321 37.037 0.00 0.00 34.92 1.98
358 359 4.534103 AGGAGGATGGTTTATAGATCTGGC 59.466 45.833 5.18 0.00 0.00 4.85
402 403 6.162079 AGTGTTCTCTGTACTGTCATGATTG 58.838 40.000 0.00 0.00 0.00 2.67
404 405 6.815641 GTGTTCTCTGTACTGTCATGATTGAT 59.184 38.462 0.00 0.00 33.56 2.57
405 406 6.815142 TGTTCTCTGTACTGTCATGATTGATG 59.185 38.462 0.00 0.00 33.56 3.07
407 408 7.174107 TCTCTGTACTGTCATGATTGATGAA 57.826 36.000 0.00 0.00 42.96 2.57
408 409 7.789026 TCTCTGTACTGTCATGATTGATGAAT 58.211 34.615 0.00 0.00 42.96 2.57
409 410 8.917088 TCTCTGTACTGTCATGATTGATGAATA 58.083 33.333 0.00 0.00 42.96 1.75
410 411 9.194271 CTCTGTACTGTCATGATTGATGAATAG 57.806 37.037 0.00 0.00 42.96 1.73
411 412 8.917088 TCTGTACTGTCATGATTGATGAATAGA 58.083 33.333 0.00 0.00 42.96 1.98
413 414 9.702494 TGTACTGTCATGATTGATGAATAGATC 57.298 33.333 0.00 0.00 42.96 2.75
416 417 9.274206 ACTGTCATGATTGATGAATAGATCTTG 57.726 33.333 0.00 0.00 42.96 3.02
443 453 3.732048 AAACCTCCCATTATCGGTGTT 57.268 42.857 0.00 0.00 0.00 3.32
444 454 4.847990 AAACCTCCCATTATCGGTGTTA 57.152 40.909 0.00 0.00 0.00 2.41
451 461 6.407074 CCTCCCATTATCGGTGTTATCCTATC 60.407 46.154 0.00 0.00 0.00 2.08
454 464 6.154534 CCCATTATCGGTGTTATCCTATCTGA 59.845 42.308 0.00 0.00 0.00 3.27
570 580 3.057596 TGGTAATTGCTCCTGCTTTTTCG 60.058 43.478 0.00 0.00 40.48 3.46
582 600 2.289547 TGCTTTTTCGAAAAGGACCTCG 59.710 45.455 30.16 12.86 36.39 4.63
589 607 2.749621 TCGAAAAGGACCTCGGTACTAC 59.250 50.000 0.24 0.00 38.57 2.73
590 608 2.476854 CGAAAAGGACCTCGGTACTACG 60.477 54.545 0.24 4.92 38.57 3.51
591 609 2.206576 AAAGGACCTCGGTACTACGT 57.793 50.000 0.24 0.00 38.57 3.57
592 610 2.206576 AAGGACCTCGGTACTACGTT 57.793 50.000 0.24 0.00 38.57 3.99
740 762 3.285484 CATCCTCCTTGAAACCTCCATG 58.715 50.000 0.00 0.00 0.00 3.66
770 792 0.748005 ATGAGGCGGCACACCAATAC 60.748 55.000 11.97 0.00 34.57 1.89
777 799 1.078426 GCACACCAATACTCCGCCT 60.078 57.895 0.00 0.00 0.00 5.52
778 800 0.177141 GCACACCAATACTCCGCCTA 59.823 55.000 0.00 0.00 0.00 3.93
806 828 2.672651 CATGGCCAACCTCGTGCA 60.673 61.111 10.96 0.00 36.63 4.57
861 884 0.030908 CCTACAGCTAGCCGCACTAC 59.969 60.000 12.13 0.00 42.61 2.73
866 889 1.115467 AGCTAGCCGCACTACATCTT 58.885 50.000 12.13 0.00 42.61 2.40
869 898 1.683917 CTAGCCGCACTACATCTTCCT 59.316 52.381 0.00 0.00 0.00 3.36
874 903 1.735700 CGCACTACATCTTCCTTCGCA 60.736 52.381 0.00 0.00 0.00 5.10
879 908 2.376808 ACATCTTCCTTCGCAGACTG 57.623 50.000 0.00 0.00 34.32 3.51
906 935 2.280186 CCGGCGGCCATACTTCTC 60.280 66.667 20.71 0.00 0.00 2.87
907 936 2.797278 CCGGCGGCCATACTTCTCT 61.797 63.158 20.71 0.00 0.00 3.10
908 937 1.461091 CCGGCGGCCATACTTCTCTA 61.461 60.000 20.71 0.00 0.00 2.43
909 938 0.039074 CGGCGGCCATACTTCTCTAG 60.039 60.000 20.71 0.00 0.00 2.43
911 940 1.413077 GGCGGCCATACTTCTCTAGTT 59.587 52.381 15.62 0.00 38.33 2.24
913 942 3.069158 GGCGGCCATACTTCTCTAGTTTA 59.931 47.826 15.62 0.00 38.33 2.01
916 945 5.862860 GCGGCCATACTTCTCTAGTTTATAC 59.137 44.000 2.24 0.00 38.33 1.47
992 1032 1.065926 TCTCCGTTAGACTAGTCGCCA 60.066 52.381 17.07 4.13 34.09 5.69
1219 1259 3.003173 CCTCACCCTCCTCGCCAA 61.003 66.667 0.00 0.00 0.00 4.52
1308 1350 2.361357 CCTCCCACTCGTCCGACT 60.361 66.667 0.00 0.00 0.00 4.18
1309 1351 2.701780 CCTCCCACTCGTCCGACTG 61.702 68.421 0.00 0.00 0.00 3.51
1310 1352 1.972223 CTCCCACTCGTCCGACTGT 60.972 63.158 0.00 0.00 0.00 3.55
1311 1353 1.924320 CTCCCACTCGTCCGACTGTC 61.924 65.000 0.00 0.00 0.00 3.51
1312 1354 2.567049 CCACTCGTCCGACTGTCC 59.433 66.667 1.55 0.00 0.00 4.02
1394 1474 4.184629 GCTGAGAATGTTGACGGATTAGT 58.815 43.478 0.00 0.00 0.00 2.24
1407 1488 3.190079 CGGATTAGTGATGTCTGTGTGG 58.810 50.000 0.00 0.00 0.00 4.17
1408 1489 3.368427 CGGATTAGTGATGTCTGTGTGGT 60.368 47.826 0.00 0.00 0.00 4.16
1414 1495 5.330455 AGTGATGTCTGTGTGGTGTATAG 57.670 43.478 0.00 0.00 0.00 1.31
1446 1549 2.405594 GCACAAACCGTTGACGCA 59.594 55.556 0.00 0.00 38.20 5.24
1447 1550 1.008995 GCACAAACCGTTGACGCAT 60.009 52.632 0.00 0.00 38.20 4.73
1448 1551 0.593773 GCACAAACCGTTGACGCATT 60.594 50.000 0.00 0.00 38.20 3.56
1450 1553 2.667171 GCACAAACCGTTGACGCATTAT 60.667 45.455 0.00 0.00 38.20 1.28
1451 1554 3.425094 GCACAAACCGTTGACGCATTATA 60.425 43.478 0.00 0.00 38.20 0.98
1452 1555 4.729458 GCACAAACCGTTGACGCATTATAT 60.729 41.667 0.00 0.00 38.20 0.86
1453 1556 5.502706 GCACAAACCGTTGACGCATTATATA 60.503 40.000 0.00 0.00 38.20 0.86
1455 1558 6.409761 CACAAACCGTTGACGCATTATATAAC 59.590 38.462 0.00 0.00 38.20 1.89
1456 1559 5.662211 AACCGTTGACGCATTATATAACC 57.338 39.130 0.00 0.00 38.18 2.85
1458 1561 5.362263 ACCGTTGACGCATTATATAACCTT 58.638 37.500 0.00 0.00 38.18 3.50
1459 1562 5.818857 ACCGTTGACGCATTATATAACCTTT 59.181 36.000 0.00 0.00 38.18 3.11
1460 1563 6.018507 ACCGTTGACGCATTATATAACCTTTC 60.019 38.462 0.00 0.00 38.18 2.62
1462 1565 7.307751 CCGTTGACGCATTATATAACCTTTCAT 60.308 37.037 0.00 0.00 38.18 2.57
1466 1569 9.549078 TGACGCATTATATAACCTTTCATTACA 57.451 29.630 0.00 0.00 0.00 2.41
1490 1593 3.712218 AGGGAACTTCTAGCAATCCTACC 59.288 47.826 0.00 0.00 37.44 3.18
1492 1595 4.900054 GGGAACTTCTAGCAATCCTACCTA 59.100 45.833 0.00 0.00 0.00 3.08
1494 1597 5.599242 GGAACTTCTAGCAATCCTACCTAGT 59.401 44.000 0.00 0.00 32.41 2.57
1495 1598 6.098552 GGAACTTCTAGCAATCCTACCTAGTT 59.901 42.308 0.00 0.00 32.41 2.24
1496 1599 6.718522 ACTTCTAGCAATCCTACCTAGTTC 57.281 41.667 0.00 0.00 32.41 3.01
1498 1601 6.841755 ACTTCTAGCAATCCTACCTAGTTCAT 59.158 38.462 0.00 0.00 32.41 2.57
1500 1603 6.136857 TCTAGCAATCCTACCTAGTTCATGT 58.863 40.000 0.00 0.00 32.41 3.21
1501 1604 5.028549 AGCAATCCTACCTAGTTCATGTG 57.971 43.478 0.00 0.00 0.00 3.21
1502 1605 3.561725 GCAATCCTACCTAGTTCATGTGC 59.438 47.826 0.00 0.00 0.00 4.57
1505 1608 4.202245 TCCTACCTAGTTCATGTGCAAC 57.798 45.455 0.00 0.00 37.35 4.17
1506 1609 3.055385 TCCTACCTAGTTCATGTGCAACC 60.055 47.826 0.00 0.00 34.36 3.77
1507 1610 2.949177 ACCTAGTTCATGTGCAACCA 57.051 45.000 0.00 0.00 34.36 3.67
1508 1611 2.504367 ACCTAGTTCATGTGCAACCAC 58.496 47.619 0.00 0.00 42.40 4.16
1516 1619 3.395210 TGTGCAACCACATTCGACT 57.605 47.368 0.00 0.00 46.51 4.18
1517 1620 1.674359 TGTGCAACCACATTCGACTT 58.326 45.000 0.00 0.00 46.51 3.01
1518 1621 2.020720 TGTGCAACCACATTCGACTTT 58.979 42.857 0.00 0.00 46.51 2.66
1519 1622 3.206964 TGTGCAACCACATTCGACTTTA 58.793 40.909 0.00 0.00 46.51 1.85
1520 1623 3.818210 TGTGCAACCACATTCGACTTTAT 59.182 39.130 0.00 0.00 46.51 1.40
1521 1624 4.158384 GTGCAACCACATTCGACTTTATG 58.842 43.478 0.00 0.00 41.67 1.90
1522 1625 3.190327 TGCAACCACATTCGACTTTATGG 59.810 43.478 0.28 0.22 0.00 2.74
1523 1626 3.427503 GCAACCACATTCGACTTTATGGG 60.428 47.826 0.28 0.00 0.00 4.00
1525 1628 1.676006 CCACATTCGACTTTATGGGGC 59.324 52.381 3.22 0.00 38.41 5.80
1526 1629 2.364632 CACATTCGACTTTATGGGGCA 58.635 47.619 0.28 0.00 0.00 5.36
1527 1630 2.752354 CACATTCGACTTTATGGGGCAA 59.248 45.455 0.28 0.00 0.00 4.52
1529 1632 4.023291 ACATTCGACTTTATGGGGCAATT 58.977 39.130 0.28 0.00 0.00 2.32
1533 1636 2.031683 CGACTTTATGGGGCAATTCGTC 59.968 50.000 0.00 0.00 0.00 4.20
1534 1637 3.279434 GACTTTATGGGGCAATTCGTCT 58.721 45.455 0.00 0.00 0.00 4.18
1536 1639 3.278574 CTTTATGGGGCAATTCGTCTCA 58.721 45.455 0.00 0.00 0.00 3.27
1545 1648 7.227873 TGGGGCAATTCGTCTCATAATATAAA 58.772 34.615 0.00 0.00 0.00 1.40
1547 1650 8.573035 GGGGCAATTCGTCTCATAATATAAAAA 58.427 33.333 0.00 0.00 0.00 1.94
1576 1679 3.859411 ACACCGTGTGTCAAAAATGTT 57.141 38.095 2.57 0.00 43.92 2.71
1577 1680 4.181309 ACACCGTGTGTCAAAAATGTTT 57.819 36.364 2.57 0.00 43.92 2.83
1578 1681 4.561105 ACACCGTGTGTCAAAAATGTTTT 58.439 34.783 2.57 0.00 43.92 2.43
1579 1682 4.991687 ACACCGTGTGTCAAAAATGTTTTT 59.008 33.333 2.57 0.00 43.92 1.94
1580 1683 6.157211 ACACCGTGTGTCAAAAATGTTTTTA 58.843 32.000 2.57 0.00 43.92 1.52
1581 1684 6.814146 ACACCGTGTGTCAAAAATGTTTTTAT 59.186 30.769 2.57 0.00 43.92 1.40
1582 1685 7.974501 ACACCGTGTGTCAAAAATGTTTTTATA 59.025 29.630 2.57 0.00 43.92 0.98
1583 1686 8.973378 CACCGTGTGTCAAAAATGTTTTTATAT 58.027 29.630 3.39 0.00 38.23 0.86
1584 1687 9.535878 ACCGTGTGTCAAAAATGTTTTTATATT 57.464 25.926 3.39 0.00 38.23 1.28
1616 1719 6.888088 TGAAGGAAGTACTTAAAAATAGGGCC 59.112 38.462 8.42 0.00 0.00 5.80
1632 1735 2.049185 GCCCGCTCACTCTCTCTGA 61.049 63.158 0.00 0.00 0.00 3.27
1768 1931 1.559682 GTCTTAGGGCATCTCCAACCA 59.440 52.381 0.00 0.00 36.21 3.67
1783 1946 5.785423 TCTCCAACCATATCCTAAATCGGAT 59.215 40.000 0.00 0.00 45.51 4.18
1862 2412 0.669318 GTCGGTCTGGATGTTTGCGA 60.669 55.000 0.00 0.00 0.00 5.10
1894 2444 2.436646 GGTGTCGGTGATGCCCTG 60.437 66.667 0.00 0.00 0.00 4.45
1923 2473 4.561500 TCGGACACCCTATCATGAAAAA 57.438 40.909 0.00 0.00 0.00 1.94
2042 2592 5.355071 TGGTGAAATCTGTATCACTCATTGC 59.645 40.000 5.95 0.00 44.20 3.56
2045 2595 1.939974 TCTGTATCACTCATTGCGCC 58.060 50.000 4.18 0.00 0.00 6.53
2055 2605 2.131183 CTCATTGCGCCTACTTCTAGC 58.869 52.381 4.18 0.00 0.00 3.42
2079 2629 3.485463 TGTCCTCCATTCGTTTCAGTT 57.515 42.857 0.00 0.00 0.00 3.16
2080 2630 3.815809 TGTCCTCCATTCGTTTCAGTTT 58.184 40.909 0.00 0.00 0.00 2.66
2081 2631 4.963373 TGTCCTCCATTCGTTTCAGTTTA 58.037 39.130 0.00 0.00 0.00 2.01
2082 2632 4.753107 TGTCCTCCATTCGTTTCAGTTTAC 59.247 41.667 0.00 0.00 0.00 2.01
2083 2633 4.753107 GTCCTCCATTCGTTTCAGTTTACA 59.247 41.667 0.00 0.00 0.00 2.41
2155 2734 2.969628 AGACGCTTGATTAGGTCCTG 57.030 50.000 0.00 0.00 0.00 3.86
2156 2735 2.457598 AGACGCTTGATTAGGTCCTGA 58.542 47.619 0.00 0.00 0.00 3.86
2157 2736 2.428890 AGACGCTTGATTAGGTCCTGAG 59.571 50.000 0.00 0.00 0.00 3.35
2158 2737 2.166664 GACGCTTGATTAGGTCCTGAGT 59.833 50.000 0.00 0.00 0.00 3.41
2159 2738 2.567615 ACGCTTGATTAGGTCCTGAGTT 59.432 45.455 0.00 0.00 0.00 3.01
2160 2739 3.008049 ACGCTTGATTAGGTCCTGAGTTT 59.992 43.478 0.00 0.00 0.00 2.66
2161 2740 4.003648 CGCTTGATTAGGTCCTGAGTTTT 58.996 43.478 0.00 0.00 0.00 2.43
2162 2741 5.175859 CGCTTGATTAGGTCCTGAGTTTTA 58.824 41.667 0.00 0.00 0.00 1.52
2163 2742 5.063564 CGCTTGATTAGGTCCTGAGTTTTAC 59.936 44.000 0.00 0.00 0.00 2.01
2164 2743 6.174049 GCTTGATTAGGTCCTGAGTTTTACT 58.826 40.000 0.00 0.00 0.00 2.24
2165 2744 6.314152 GCTTGATTAGGTCCTGAGTTTTACTC 59.686 42.308 0.00 0.00 45.26 2.59
2166 2745 6.295719 TGATTAGGTCCTGAGTTTTACTCC 57.704 41.667 0.00 0.00 44.44 3.85
2283 2876 7.394359 AGTTAATTCACAGAGTAAATGCCATGT 59.606 33.333 0.00 0.00 0.00 3.21
2430 3772 4.192640 CAAACAAATTTAGTTGCAACGCG 58.807 39.130 23.21 3.53 31.29 6.01
2445 3787 3.062099 GCAACGCGAGATGAAACTATGAA 59.938 43.478 15.93 0.00 35.71 2.57
2463 3805 7.519002 ACTATGAAAGTTTATGCTCGTGTTTC 58.481 34.615 0.00 0.00 33.35 2.78
2471 3813 5.759506 TTATGCTCGTGTTTCCTCAAAAA 57.240 34.783 0.00 0.00 0.00 1.94
2487 3829 5.231991 CCTCAAAAATTCCTTCGTGTTGTTG 59.768 40.000 0.00 0.00 0.00 3.33
2489 3831 5.574830 TCAAAAATTCCTTCGTGTTGTTGTG 59.425 36.000 0.00 0.00 0.00 3.33
2490 3832 4.974368 AAATTCCTTCGTGTTGTTGTGA 57.026 36.364 0.00 0.00 0.00 3.58
2492 3834 4.552166 ATTCCTTCGTGTTGTTGTGAAG 57.448 40.909 0.00 0.00 38.01 3.02
2502 3862 3.498777 TGTTGTTGTGAAGAACGTGTCAA 59.501 39.130 0.00 0.00 37.46 3.18
2510 3870 5.587043 TGTGAAGAACGTGTCAACCTTAAAT 59.413 36.000 0.00 0.00 0.00 1.40
2537 3897 7.703328 ACTAAAACTGTCATCAAAATGTTCGT 58.297 30.769 0.00 0.00 34.32 3.85
2553 3913 5.509605 TGTTCGTAAATGTCACATTCTCG 57.490 39.130 16.32 16.32 0.00 4.04
2563 3923 2.020559 CATTCTCGCAGCGAACGC 59.979 61.111 20.04 11.31 32.58 4.84
2592 3957 6.097554 TGAGATAAGAGGGTTCTAGAAGCAAG 59.902 42.308 30.11 0.00 40.33 4.01
2595 3960 5.408880 AAGAGGGTTCTAGAAGCAAGTAC 57.591 43.478 30.11 15.90 40.33 2.73
2596 3961 4.679331 AGAGGGTTCTAGAAGCAAGTACT 58.321 43.478 30.11 19.69 40.33 2.73
2597 3962 5.828871 AGAGGGTTCTAGAAGCAAGTACTA 58.171 41.667 30.11 0.00 40.33 1.82
2599 3964 6.322712 AGAGGGTTCTAGAAGCAAGTACTATG 59.677 42.308 30.11 0.00 40.33 2.23
2600 3965 5.051153 GGGTTCTAGAAGCAAGTACTATGC 58.949 45.833 30.11 17.19 44.15 3.14
2659 4211 5.070770 ACAATTACAACCACGACCGTATA 57.929 39.130 0.00 0.00 0.00 1.47
2660 4212 4.864247 ACAATTACAACCACGACCGTATAC 59.136 41.667 0.00 0.00 0.00 1.47
2661 4213 4.717233 ATTACAACCACGACCGTATACA 57.283 40.909 3.32 0.00 0.00 2.29
2662 4214 4.717233 TTACAACCACGACCGTATACAT 57.283 40.909 3.32 0.00 0.00 2.29
2663 4215 5.826601 TTACAACCACGACCGTATACATA 57.173 39.130 3.32 0.00 0.00 2.29
2664 4216 4.032703 ACAACCACGACCGTATACATAC 57.967 45.455 3.32 0.00 0.00 2.39
2665 4217 3.181487 ACAACCACGACCGTATACATACC 60.181 47.826 3.32 0.00 0.00 2.73
2719 4271 6.528072 CGAGTAAAATTTTCATTTCTGCTCCC 59.472 38.462 6.72 0.00 30.80 4.30
2723 4275 1.533625 TTTCATTTCTGCTCCCCGTG 58.466 50.000 0.00 0.00 0.00 4.94
2773 4465 7.786178 AGTGCTTAATCGATTAATAACTGCA 57.214 32.000 27.85 26.81 31.82 4.41
2774 4466 8.383318 AGTGCTTAATCGATTAATAACTGCAT 57.617 30.769 29.09 20.39 33.79 3.96
2775 4467 8.285394 AGTGCTTAATCGATTAATAACTGCATG 58.715 33.333 29.09 17.94 33.79 4.06
2776 4468 8.070171 GTGCTTAATCGATTAATAACTGCATGT 58.930 33.333 29.09 4.03 33.79 3.21
2777 4469 8.069574 TGCTTAATCGATTAATAACTGCATGTG 58.930 33.333 26.39 13.68 32.36 3.21
2778 4470 7.059945 GCTTAATCGATTAATAACTGCATGTGC 59.940 37.037 26.39 18.37 35.28 4.57
2779 4471 4.811555 TCGATTAATAACTGCATGTGCC 57.188 40.909 2.07 0.00 41.18 5.01
2780 4472 3.247411 TCGATTAATAACTGCATGTGCCG 59.753 43.478 2.07 0.00 41.18 5.69
2980 4676 4.391155 TCTTCTTCTCTATCGTCTAGCCC 58.609 47.826 0.00 0.00 0.00 5.19
2984 4680 2.852449 TCTCTATCGTCTAGCCCTGTG 58.148 52.381 0.00 0.00 0.00 3.66
3030 4728 1.179152 TCTGATGAACGGAGCGGTTA 58.821 50.000 0.00 0.00 0.00 2.85
3099 4797 1.725557 GCCTGCTCGTCACGGAGATA 61.726 60.000 0.00 0.00 36.08 1.98
3197 4895 7.425595 CGTCGACGTACGTATAGATATACAGTA 59.574 40.741 29.08 9.38 43.13 2.74
3198 4896 8.729528 GTCGACGTACGTATAGATATACAGTAG 58.270 40.741 22.87 0.00 43.13 2.57
3199 4897 7.429630 TCGACGTACGTATAGATATACAGTAGC 59.570 40.741 22.87 1.19 43.13 3.58
3653 5371 5.008273 CGCAATTATTGTTGAAAATGCACG 58.992 37.500 6.81 0.00 0.00 5.34
3655 5373 6.361899 GCAATTATTGTTGAAAATGCACGTT 58.638 32.000 6.81 0.00 0.00 3.99
3661 5379 7.795431 ATTGTTGAAAATGCACGTTATGTAG 57.205 32.000 0.00 0.00 0.00 2.74
3667 5385 8.176814 TGAAAATGCACGTTATGTAGTAGTAC 57.823 34.615 0.37 0.37 0.00 2.73
3807 5529 1.135859 GCTGTTTCGCTGATTGACTGG 60.136 52.381 0.00 0.00 0.00 4.00
3823 5545 4.973168 TGACTGGCAGTAGAAAAACTCAT 58.027 39.130 22.11 0.00 0.00 2.90
3850 5572 8.172352 TCTTCTATGCTTACATCTTCTACTCC 57.828 38.462 0.00 0.00 37.74 3.85
3851 5573 6.902771 TCTATGCTTACATCTTCTACTCCC 57.097 41.667 0.00 0.00 37.74 4.30
3852 5574 6.615617 TCTATGCTTACATCTTCTACTCCCT 58.384 40.000 0.00 0.00 37.74 4.20
3853 5575 7.069986 TCTATGCTTACATCTTCTACTCCCTT 58.930 38.462 0.00 0.00 37.74 3.95
3854 5576 5.599999 TGCTTACATCTTCTACTCCCTTC 57.400 43.478 0.00 0.00 0.00 3.46
3855 5577 4.098044 TGCTTACATCTTCTACTCCCTTCG 59.902 45.833 0.00 0.00 0.00 3.79
3856 5578 4.098196 GCTTACATCTTCTACTCCCTTCGT 59.902 45.833 0.00 0.00 0.00 3.85
3857 5579 5.733937 GCTTACATCTTCTACTCCCTTCGTC 60.734 48.000 0.00 0.00 0.00 4.20
3858 5580 3.025262 ACATCTTCTACTCCCTTCGTCC 58.975 50.000 0.00 0.00 0.00 4.79
3859 5581 2.140839 TCTTCTACTCCCTTCGTCCC 57.859 55.000 0.00 0.00 0.00 4.46
3860 5582 1.356738 TCTTCTACTCCCTTCGTCCCA 59.643 52.381 0.00 0.00 0.00 4.37
3861 5583 2.024273 TCTTCTACTCCCTTCGTCCCAT 60.024 50.000 0.00 0.00 0.00 4.00
3862 5584 3.203710 TCTTCTACTCCCTTCGTCCCATA 59.796 47.826 0.00 0.00 0.00 2.74
3863 5585 3.675348 TCTACTCCCTTCGTCCCATAA 57.325 47.619 0.00 0.00 0.00 1.90
3864 5586 4.194678 TCTACTCCCTTCGTCCCATAAT 57.805 45.455 0.00 0.00 0.00 1.28
3865 5587 5.329191 TCTACTCCCTTCGTCCCATAATA 57.671 43.478 0.00 0.00 0.00 0.98
3866 5588 5.900437 TCTACTCCCTTCGTCCCATAATAT 58.100 41.667 0.00 0.00 0.00 1.28
3867 5589 7.036154 TCTACTCCCTTCGTCCCATAATATA 57.964 40.000 0.00 0.00 0.00 0.86
3868 5590 7.472741 TCTACTCCCTTCGTCCCATAATATAA 58.527 38.462 0.00 0.00 0.00 0.98
3869 5591 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
3870 5592 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
3871 5593 6.785963 ACTCCCTTCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
3872 5594 7.001099 TCCCTTCGTCCCATAATATAAGAAC 57.999 40.000 0.00 0.00 0.00 3.01
3873 5595 5.867716 CCCTTCGTCCCATAATATAAGAACG 59.132 44.000 0.00 0.00 0.00 3.95
3874 5596 6.453092 CCTTCGTCCCATAATATAAGAACGT 58.547 40.000 0.00 0.00 0.00 3.99
3875 5597 6.927381 CCTTCGTCCCATAATATAAGAACGTT 59.073 38.462 0.00 0.00 0.00 3.99
3876 5598 7.440255 CCTTCGTCCCATAATATAAGAACGTTT 59.560 37.037 0.46 0.00 0.00 3.60
3877 5599 8.721019 TTCGTCCCATAATATAAGAACGTTTT 57.279 30.769 0.46 0.00 0.00 2.43
3878 5600 8.721019 TCGTCCCATAATATAAGAACGTTTTT 57.279 30.769 9.22 9.22 0.00 1.94
3879 5601 8.605746 TCGTCCCATAATATAAGAACGTTTTTG 58.394 33.333 13.87 0.00 0.00 2.44
3880 5602 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
3881 5603 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3882 5604 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3892 5614 7.781548 AGAACGTTTTTGACATTAGTGTAGT 57.218 32.000 0.46 0.00 39.09 2.73
3893 5615 7.627340 AGAACGTTTTTGACATTAGTGTAGTG 58.373 34.615 0.46 0.00 39.09 2.74
3894 5616 6.913873 ACGTTTTTGACATTAGTGTAGTGT 57.086 33.333 0.00 0.00 39.09 3.55
3895 5617 6.940714 ACGTTTTTGACATTAGTGTAGTGTC 58.059 36.000 0.00 3.35 43.31 3.67
3903 5625 6.913873 ACATTAGTGTAGTGTCAAAAACGT 57.086 33.333 0.00 0.00 36.63 3.99
3904 5626 7.311364 ACATTAGTGTAGTGTCAAAAACGTT 57.689 32.000 0.00 0.00 36.63 3.99
3905 5627 7.404203 ACATTAGTGTAGTGTCAAAAACGTTC 58.596 34.615 0.00 0.00 36.63 3.95
3906 5628 7.279313 ACATTAGTGTAGTGTCAAAAACGTTCT 59.721 33.333 0.00 0.00 36.63 3.01
3907 5629 7.599630 TTAGTGTAGTGTCAAAAACGTTCTT 57.400 32.000 0.00 0.00 0.00 2.52
3908 5630 8.700722 TTAGTGTAGTGTCAAAAACGTTCTTA 57.299 30.769 0.00 0.00 0.00 2.10
3909 5631 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
3910 5632 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
3911 5633 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
3947 5669 5.992217 GGAAGTAGTTATTCGGCTCATCAAT 59.008 40.000 0.00 0.00 0.00 2.57
3962 5684 4.591929 TCATCAATGATTCAAGGCTGACA 58.408 39.130 0.00 0.00 0.00 3.58
3970 5692 4.276678 TGATTCAAGGCTGACAAACAAGAG 59.723 41.667 0.00 0.00 0.00 2.85
3978 5700 4.380444 GGCTGACAAACAAGAGACACAAAA 60.380 41.667 0.00 0.00 0.00 2.44
3979 5701 5.343249 GCTGACAAACAAGAGACACAAAAT 58.657 37.500 0.00 0.00 0.00 1.82
3980 5702 6.459573 GGCTGACAAACAAGAGACACAAAATA 60.460 38.462 0.00 0.00 0.00 1.40
3981 5703 6.634436 GCTGACAAACAAGAGACACAAAATAG 59.366 38.462 0.00 0.00 0.00 1.73
3982 5704 6.494842 TGACAAACAAGAGACACAAAATAGC 58.505 36.000 0.00 0.00 0.00 2.97
3983 5705 6.094742 TGACAAACAAGAGACACAAAATAGCA 59.905 34.615 0.00 0.00 0.00 3.49
3984 5706 6.862209 ACAAACAAGAGACACAAAATAGCAA 58.138 32.000 0.00 0.00 0.00 3.91
3985 5707 6.751888 ACAAACAAGAGACACAAAATAGCAAC 59.248 34.615 0.00 0.00 0.00 4.17
3986 5708 6.449635 AACAAGAGACACAAAATAGCAACA 57.550 33.333 0.00 0.00 0.00 3.33
3987 5709 6.639632 ACAAGAGACACAAAATAGCAACAT 57.360 33.333 0.00 0.00 0.00 2.71
3988 5710 7.744087 ACAAGAGACACAAAATAGCAACATA 57.256 32.000 0.00 0.00 0.00 2.29
3989 5711 7.584987 ACAAGAGACACAAAATAGCAACATAC 58.415 34.615 0.00 0.00 0.00 2.39
3990 5712 7.445402 ACAAGAGACACAAAATAGCAACATACT 59.555 33.333 0.00 0.00 0.00 2.12
4080 6107 6.036517 CCACTGCTCTTCATAACTATGAACAC 59.963 42.308 7.86 2.68 45.03 3.32
4151 6201 1.461127 GCAGGTTCAGTAACGAAGCAG 59.539 52.381 5.75 0.00 44.08 4.24
4240 6292 4.379499 GGAGCCGGTCAAGAGTTAAAAATG 60.379 45.833 1.90 0.00 0.00 2.32
4322 6374 0.550914 TAATAAGCAGCACCTGGGGG 59.449 55.000 0.00 0.00 38.88 5.40
4361 6420 4.427096 TGCGTACAAATACACAATTGGG 57.573 40.909 6.04 6.04 0.00 4.12
4382 6441 2.733227 GCATGATTCTTCTGTTTGCCCG 60.733 50.000 0.00 0.00 0.00 6.13
4394 6453 1.947456 GTTTGCCCGGTCCTATTCATC 59.053 52.381 0.00 0.00 0.00 2.92
4395 6454 1.208706 TTGCCCGGTCCTATTCATCA 58.791 50.000 0.00 0.00 0.00 3.07
4439 6498 2.197577 GCTGCAGTACCTCTTTCGATC 58.802 52.381 16.64 0.00 0.00 3.69
4494 6553 2.032290 GGAGGAACACGTTTAAGCACAC 60.032 50.000 0.00 0.00 0.00 3.82
4501 6560 5.502153 ACACGTTTAAGCACACCATTTTA 57.498 34.783 0.00 0.00 0.00 1.52
4506 6565 5.048991 CGTTTAAGCACACCATTTTAGGTCT 60.049 40.000 0.00 0.00 40.77 3.85
4510 6569 2.151202 CACACCATTTTAGGTCTGCGT 58.849 47.619 0.00 0.00 40.77 5.24
4567 6634 4.948621 CCTTCCTCAGAATTCAGCTGAAAT 59.051 41.667 31.55 24.51 41.45 2.17
4585 6652 3.485463 AATCTTCAACAGACCCGTGAA 57.515 42.857 0.00 0.00 32.83 3.18
4586 6653 2.234300 TCTTCAACAGACCCGTGAAC 57.766 50.000 0.00 0.00 0.00 3.18
4594 6661 0.395312 AGACCCGTGAACCGAAACAT 59.605 50.000 0.00 0.00 39.56 2.71
4595 6662 0.794473 GACCCGTGAACCGAAACATC 59.206 55.000 0.00 0.00 39.56 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.451877 TGGCACAAATTACAAAGGGAACTTATA 59.548 33.333 0.00 0.00 44.48 0.98
6 7 5.598830 TGGCACAAATTACAAAGGGAACTTA 59.401 36.000 0.00 0.00 44.48 2.24
7 8 4.407296 TGGCACAAATTACAAAGGGAACTT 59.593 37.500 0.00 0.00 46.92 2.66
8 9 3.964031 TGGCACAAATTACAAAGGGAACT 59.036 39.130 0.00 0.00 37.83 3.01
9 10 4.329462 TGGCACAAATTACAAAGGGAAC 57.671 40.909 0.00 0.00 31.92 3.62
24 25 1.894466 CCATGGTCAGAATTTGGCACA 59.106 47.619 2.57 0.00 31.20 4.57
25 26 2.170166 TCCATGGTCAGAATTTGGCAC 58.830 47.619 12.58 0.00 31.20 5.01
26 27 2.601240 TCCATGGTCAGAATTTGGCA 57.399 45.000 12.58 0.00 31.20 4.92
27 28 4.476628 AAATCCATGGTCAGAATTTGGC 57.523 40.909 12.58 0.00 0.00 4.52
28 29 7.174107 AGTTAAATCCATGGTCAGAATTTGG 57.826 36.000 12.58 0.00 0.00 3.28
69 70 8.978564 TGCAACAATATAATTTTTCGTGACAT 57.021 26.923 0.00 0.00 0.00 3.06
70 71 8.978564 ATGCAACAATATAATTTTTCGTGACA 57.021 26.923 0.00 0.00 0.00 3.58
71 72 9.885743 GAATGCAACAATATAATTTTTCGTGAC 57.114 29.630 0.00 0.00 0.00 3.67
72 73 8.793472 CGAATGCAACAATATAATTTTTCGTGA 58.207 29.630 0.00 0.00 0.00 4.35
73 74 8.582930 ACGAATGCAACAATATAATTTTTCGTG 58.417 29.630 13.21 0.00 42.39 4.35
74 75 8.682128 ACGAATGCAACAATATAATTTTTCGT 57.318 26.923 9.36 9.36 40.13 3.85
82 83 9.103861 TGTTCAGATACGAATGCAACAATATAA 57.896 29.630 0.00 0.00 0.00 0.98
83 84 8.655651 TGTTCAGATACGAATGCAACAATATA 57.344 30.769 0.00 0.00 0.00 0.86
84 85 7.552458 TGTTCAGATACGAATGCAACAATAT 57.448 32.000 0.00 0.00 0.00 1.28
85 86 6.976636 TGTTCAGATACGAATGCAACAATA 57.023 33.333 0.00 0.00 0.00 1.90
86 87 5.878332 TGTTCAGATACGAATGCAACAAT 57.122 34.783 0.00 0.00 0.00 2.71
87 88 5.878332 ATGTTCAGATACGAATGCAACAA 57.122 34.783 0.00 0.00 0.00 2.83
88 89 6.106003 ACTATGTTCAGATACGAATGCAACA 58.894 36.000 0.00 0.00 0.00 3.33
89 90 6.589830 ACTATGTTCAGATACGAATGCAAC 57.410 37.500 0.00 0.00 0.00 4.17
90 91 7.609760 AAACTATGTTCAGATACGAATGCAA 57.390 32.000 0.00 0.00 0.00 4.08
91 92 7.333174 TGAAAACTATGTTCAGATACGAATGCA 59.667 33.333 0.00 0.00 31.45 3.96
92 93 7.684670 TGAAAACTATGTTCAGATACGAATGC 58.315 34.615 0.00 0.00 31.45 3.56
189 190 9.158233 CGTCCTGATTTATTAGTTCCTTTTGTA 57.842 33.333 0.00 0.00 0.00 2.41
190 191 7.120726 CCGTCCTGATTTATTAGTTCCTTTTGT 59.879 37.037 0.00 0.00 0.00 2.83
191 192 7.415206 CCCGTCCTGATTTATTAGTTCCTTTTG 60.415 40.741 0.00 0.00 0.00 2.44
192 193 6.602009 CCCGTCCTGATTTATTAGTTCCTTTT 59.398 38.462 0.00 0.00 0.00 2.27
193 194 6.120220 CCCGTCCTGATTTATTAGTTCCTTT 58.880 40.000 0.00 0.00 0.00 3.11
194 195 5.191124 ACCCGTCCTGATTTATTAGTTCCTT 59.809 40.000 0.00 0.00 0.00 3.36
195 196 4.720273 ACCCGTCCTGATTTATTAGTTCCT 59.280 41.667 0.00 0.00 0.00 3.36
196 197 4.814771 CACCCGTCCTGATTTATTAGTTCC 59.185 45.833 0.00 0.00 0.00 3.62
197 198 5.425630 ACACCCGTCCTGATTTATTAGTTC 58.574 41.667 0.00 0.00 0.00 3.01
198 199 5.431179 ACACCCGTCCTGATTTATTAGTT 57.569 39.130 0.00 0.00 0.00 2.24
199 200 5.659971 ACTACACCCGTCCTGATTTATTAGT 59.340 40.000 0.00 0.00 0.00 2.24
200 201 6.158023 ACTACACCCGTCCTGATTTATTAG 57.842 41.667 0.00 0.00 0.00 1.73
201 202 6.835488 AGTACTACACCCGTCCTGATTTATTA 59.165 38.462 0.00 0.00 0.00 0.98
202 203 5.659971 AGTACTACACCCGTCCTGATTTATT 59.340 40.000 0.00 0.00 0.00 1.40
203 204 5.206587 AGTACTACACCCGTCCTGATTTAT 58.793 41.667 0.00 0.00 0.00 1.40
204 205 4.603131 AGTACTACACCCGTCCTGATTTA 58.397 43.478 0.00 0.00 0.00 1.40
205 206 3.438183 AGTACTACACCCGTCCTGATTT 58.562 45.455 0.00 0.00 0.00 2.17
206 207 3.097342 AGTACTACACCCGTCCTGATT 57.903 47.619 0.00 0.00 0.00 2.57
207 208 2.822707 AGTACTACACCCGTCCTGAT 57.177 50.000 0.00 0.00 0.00 2.90
208 209 2.573462 AGTAGTACTACACCCGTCCTGA 59.427 50.000 29.87 0.00 38.48 3.86
209 210 2.941720 GAGTAGTACTACACCCGTCCTG 59.058 54.545 29.87 0.00 38.48 3.86
210 211 2.843113 AGAGTAGTACTACACCCGTCCT 59.157 50.000 29.87 10.73 38.48 3.85
211 212 3.274095 AGAGTAGTACTACACCCGTCC 57.726 52.381 29.87 12.48 38.48 4.79
212 213 5.182001 TGAAAAGAGTAGTACTACACCCGTC 59.818 44.000 29.87 21.16 38.48 4.79
213 214 5.072741 TGAAAAGAGTAGTACTACACCCGT 58.927 41.667 29.87 16.01 38.48 5.28
214 215 5.633830 TGAAAAGAGTAGTACTACACCCG 57.366 43.478 29.87 0.00 38.48 5.28
215 216 5.860716 CGTTGAAAAGAGTAGTACTACACCC 59.139 44.000 29.87 19.42 38.48 4.61
216 217 6.442112 ACGTTGAAAAGAGTAGTACTACACC 58.558 40.000 29.87 21.51 38.48 4.16
217 218 7.645340 TCAACGTTGAAAAGAGTAGTACTACAC 59.355 37.037 29.87 24.62 34.93 2.90
218 219 7.706159 TCAACGTTGAAAAGAGTAGTACTACA 58.294 34.615 29.87 9.07 34.93 2.74
219 220 8.636843 CATCAACGTTGAAAAGAGTAGTACTAC 58.363 37.037 32.69 23.03 41.13 2.73
220 221 7.811236 CCATCAACGTTGAAAAGAGTAGTACTA 59.189 37.037 32.69 6.36 41.13 1.82
221 222 6.645415 CCATCAACGTTGAAAAGAGTAGTACT 59.355 38.462 32.69 10.49 41.13 2.73
222 223 6.423001 ACCATCAACGTTGAAAAGAGTAGTAC 59.577 38.462 32.69 0.00 41.13 2.73
223 224 6.518493 ACCATCAACGTTGAAAAGAGTAGTA 58.482 36.000 32.69 7.69 41.13 1.82
224 225 5.365619 ACCATCAACGTTGAAAAGAGTAGT 58.634 37.500 32.69 17.69 41.13 2.73
225 226 5.924475 ACCATCAACGTTGAAAAGAGTAG 57.076 39.130 32.69 17.13 41.13 2.57
226 227 5.504994 GCAACCATCAACGTTGAAAAGAGTA 60.505 40.000 32.69 9.74 42.63 2.59
227 228 4.733523 GCAACCATCAACGTTGAAAAGAGT 60.734 41.667 32.69 21.38 42.63 3.24
228 229 3.730715 GCAACCATCAACGTTGAAAAGAG 59.269 43.478 32.69 22.45 42.63 2.85
229 230 3.380004 AGCAACCATCAACGTTGAAAAGA 59.620 39.130 32.69 12.03 42.63 2.52
230 231 3.486841 CAGCAACCATCAACGTTGAAAAG 59.513 43.478 32.69 24.58 42.63 2.27
231 232 3.443037 CAGCAACCATCAACGTTGAAAA 58.557 40.909 32.69 12.81 42.63 2.29
232 233 2.797792 GCAGCAACCATCAACGTTGAAA 60.798 45.455 32.69 13.59 42.63 2.69
233 234 1.268999 GCAGCAACCATCAACGTTGAA 60.269 47.619 32.69 17.45 42.63 2.69
234 235 0.310543 GCAGCAACCATCAACGTTGA 59.689 50.000 31.41 31.41 42.63 3.18
235 236 0.311790 AGCAGCAACCATCAACGTTG 59.688 50.000 22.35 22.35 42.83 4.10
236 237 0.593128 GAGCAGCAACCATCAACGTT 59.407 50.000 0.00 0.00 0.00 3.99
237 238 0.250467 AGAGCAGCAACCATCAACGT 60.250 50.000 0.00 0.00 0.00 3.99
238 239 0.167470 CAGAGCAGCAACCATCAACG 59.833 55.000 0.00 0.00 0.00 4.10
239 240 1.527034 TCAGAGCAGCAACCATCAAC 58.473 50.000 0.00 0.00 0.00 3.18
240 241 2.089201 CATCAGAGCAGCAACCATCAA 58.911 47.619 0.00 0.00 0.00 2.57
241 242 1.003928 ACATCAGAGCAGCAACCATCA 59.996 47.619 0.00 0.00 0.00 3.07
242 243 1.400846 CACATCAGAGCAGCAACCATC 59.599 52.381 0.00 0.00 0.00 3.51
243 244 1.271762 ACACATCAGAGCAGCAACCAT 60.272 47.619 0.00 0.00 0.00 3.55
244 245 0.109153 ACACATCAGAGCAGCAACCA 59.891 50.000 0.00 0.00 0.00 3.67
245 246 1.068748 CAACACATCAGAGCAGCAACC 60.069 52.381 0.00 0.00 0.00 3.77
246 247 1.068748 CCAACACATCAGAGCAGCAAC 60.069 52.381 0.00 0.00 0.00 4.17
247 248 1.241165 CCAACACATCAGAGCAGCAA 58.759 50.000 0.00 0.00 0.00 3.91
248 249 0.109153 ACCAACACATCAGAGCAGCA 59.891 50.000 0.00 0.00 0.00 4.41
249 250 0.801251 GACCAACACATCAGAGCAGC 59.199 55.000 0.00 0.00 0.00 5.25
250 251 1.002888 AGGACCAACACATCAGAGCAG 59.997 52.381 0.00 0.00 0.00 4.24
251 252 1.059098 AGGACCAACACATCAGAGCA 58.941 50.000 0.00 0.00 0.00 4.26
252 253 2.191128 AAGGACCAACACATCAGAGC 57.809 50.000 0.00 0.00 0.00 4.09
253 254 2.816087 CCAAAGGACCAACACATCAGAG 59.184 50.000 0.00 0.00 0.00 3.35
254 255 2.441375 TCCAAAGGACCAACACATCAGA 59.559 45.455 0.00 0.00 0.00 3.27
255 256 2.816087 CTCCAAAGGACCAACACATCAG 59.184 50.000 0.00 0.00 0.00 2.90
256 257 2.862541 CTCCAAAGGACCAACACATCA 58.137 47.619 0.00 0.00 0.00 3.07
257 258 1.541588 GCTCCAAAGGACCAACACATC 59.458 52.381 0.00 0.00 0.00 3.06
258 259 1.620822 GCTCCAAAGGACCAACACAT 58.379 50.000 0.00 0.00 0.00 3.21
259 260 0.467290 GGCTCCAAAGGACCAACACA 60.467 55.000 0.00 0.00 0.00 3.72
260 261 0.178990 AGGCTCCAAAGGACCAACAC 60.179 55.000 0.00 0.00 0.00 3.32
261 262 0.555769 AAGGCTCCAAAGGACCAACA 59.444 50.000 0.00 0.00 0.00 3.33
262 263 2.557056 GTTAAGGCTCCAAAGGACCAAC 59.443 50.000 0.00 0.00 0.00 3.77
263 264 2.175931 TGTTAAGGCTCCAAAGGACCAA 59.824 45.455 0.00 0.00 0.00 3.67
264 265 1.777878 TGTTAAGGCTCCAAAGGACCA 59.222 47.619 0.00 0.00 0.00 4.02
265 266 2.160205 GTGTTAAGGCTCCAAAGGACC 58.840 52.381 0.00 0.00 0.00 4.46
266 267 2.858745 TGTGTTAAGGCTCCAAAGGAC 58.141 47.619 0.00 0.00 0.00 3.85
267 268 3.586470 TTGTGTTAAGGCTCCAAAGGA 57.414 42.857 0.00 0.00 0.00 3.36
268 269 3.826157 TCATTGTGTTAAGGCTCCAAAGG 59.174 43.478 0.00 0.00 0.00 3.11
269 270 4.520492 AGTCATTGTGTTAAGGCTCCAAAG 59.480 41.667 0.00 0.00 0.00 2.77
270 271 4.469657 AGTCATTGTGTTAAGGCTCCAAA 58.530 39.130 0.00 0.00 0.00 3.28
271 272 4.098914 AGTCATTGTGTTAAGGCTCCAA 57.901 40.909 0.00 0.00 0.00 3.53
272 273 3.788227 AGTCATTGTGTTAAGGCTCCA 57.212 42.857 0.00 0.00 0.00 3.86
273 274 4.762251 AGAAAGTCATTGTGTTAAGGCTCC 59.238 41.667 0.00 0.00 0.00 4.70
274 275 5.470098 TCAGAAAGTCATTGTGTTAAGGCTC 59.530 40.000 0.00 0.00 34.09 4.70
275 276 5.239525 GTCAGAAAGTCATTGTGTTAAGGCT 59.760 40.000 0.00 0.00 34.09 4.58
276 277 5.239525 AGTCAGAAAGTCATTGTGTTAAGGC 59.760 40.000 0.00 0.00 34.09 4.35
277 278 6.260936 ACAGTCAGAAAGTCATTGTGTTAAGG 59.739 38.462 0.00 0.00 34.09 2.69
278 279 7.225538 AGACAGTCAGAAAGTCATTGTGTTAAG 59.774 37.037 2.66 0.00 34.09 1.85
279 280 7.047891 AGACAGTCAGAAAGTCATTGTGTTAA 58.952 34.615 2.66 0.00 34.09 2.01
280 281 6.582636 AGACAGTCAGAAAGTCATTGTGTTA 58.417 36.000 2.66 0.00 34.09 2.41
281 282 5.431765 AGACAGTCAGAAAGTCATTGTGTT 58.568 37.500 2.66 0.00 34.09 3.32
282 283 5.028549 AGACAGTCAGAAAGTCATTGTGT 57.971 39.130 2.66 0.00 34.09 3.72
283 284 8.763049 TTATAGACAGTCAGAAAGTCATTGTG 57.237 34.615 2.66 0.00 34.80 3.33
298 299 9.760077 CGGACAAACCTTATTATTATAGACAGT 57.240 33.333 0.00 0.00 36.31 3.55
299 300 9.204570 CCGGACAAACCTTATTATTATAGACAG 57.795 37.037 0.00 0.00 36.31 3.51
300 301 7.658575 GCCGGACAAACCTTATTATTATAGACA 59.341 37.037 5.05 0.00 36.31 3.41
301 302 7.876582 AGCCGGACAAACCTTATTATTATAGAC 59.123 37.037 5.05 0.00 36.31 2.59
302 303 7.970102 AGCCGGACAAACCTTATTATTATAGA 58.030 34.615 5.05 0.00 36.31 1.98
303 304 7.333672 GGAGCCGGACAAACCTTATTATTATAG 59.666 40.741 5.05 0.00 36.31 1.31
304 305 7.163441 GGAGCCGGACAAACCTTATTATTATA 58.837 38.462 5.05 0.00 36.31 0.98
305 306 6.002082 GGAGCCGGACAAACCTTATTATTAT 58.998 40.000 5.05 0.00 36.31 1.28
306 307 5.370679 GGAGCCGGACAAACCTTATTATTA 58.629 41.667 5.05 0.00 36.31 0.98
307 308 4.204799 GGAGCCGGACAAACCTTATTATT 58.795 43.478 5.05 0.00 36.31 1.40
308 309 3.743269 CGGAGCCGGACAAACCTTATTAT 60.743 47.826 5.05 0.00 36.31 1.28
309 310 2.419021 CGGAGCCGGACAAACCTTATTA 60.419 50.000 5.05 0.00 36.31 0.98
310 311 1.677820 CGGAGCCGGACAAACCTTATT 60.678 52.381 5.05 0.00 36.31 1.40
311 312 0.107848 CGGAGCCGGACAAACCTTAT 60.108 55.000 5.05 0.00 36.31 1.73
312 313 1.186917 TCGGAGCCGGACAAACCTTA 61.187 55.000 5.05 0.00 40.25 2.69
313 314 1.838073 ATCGGAGCCGGACAAACCTT 61.838 55.000 5.05 0.00 40.25 3.50
314 315 0.974010 TATCGGAGCCGGACAAACCT 60.974 55.000 5.05 0.00 40.25 3.50
315 316 0.108041 TTATCGGAGCCGGACAAACC 60.108 55.000 5.05 0.00 40.25 3.27
316 317 1.664151 CTTTATCGGAGCCGGACAAAC 59.336 52.381 5.05 0.00 40.25 2.93
317 318 1.406341 CCTTTATCGGAGCCGGACAAA 60.406 52.381 5.05 6.27 40.25 2.83
318 319 0.177141 CCTTTATCGGAGCCGGACAA 59.823 55.000 5.05 0.00 40.25 3.18
319 320 0.685131 TCCTTTATCGGAGCCGGACA 60.685 55.000 5.05 0.00 40.25 4.02
320 321 0.032267 CTCCTTTATCGGAGCCGGAC 59.968 60.000 5.05 0.00 43.69 4.79
321 322 2.426651 CTCCTTTATCGGAGCCGGA 58.573 57.895 5.05 0.00 43.69 5.14
327 328 7.014449 TCTATAAACCATCCTCCTTTATCGGA 58.986 38.462 0.00 0.00 0.00 4.55
328 329 7.241042 TCTATAAACCATCCTCCTTTATCGG 57.759 40.000 0.00 0.00 0.00 4.18
329 330 8.754080 AGATCTATAAACCATCCTCCTTTATCG 58.246 37.037 0.00 0.00 0.00 2.92
330 331 9.883142 CAGATCTATAAACCATCCTCCTTTATC 57.117 37.037 0.00 0.00 0.00 1.75
331 332 8.830741 CCAGATCTATAAACCATCCTCCTTTAT 58.169 37.037 0.00 0.00 0.00 1.40
332 333 7.256691 GCCAGATCTATAAACCATCCTCCTTTA 60.257 40.741 0.00 0.00 0.00 1.85
333 334 6.466470 GCCAGATCTATAAACCATCCTCCTTT 60.466 42.308 0.00 0.00 0.00 3.11
334 335 5.013599 GCCAGATCTATAAACCATCCTCCTT 59.986 44.000 0.00 0.00 0.00 3.36
335 336 4.534103 GCCAGATCTATAAACCATCCTCCT 59.466 45.833 0.00 0.00 0.00 3.69
336 337 4.534103 AGCCAGATCTATAAACCATCCTCC 59.466 45.833 0.00 0.00 0.00 4.30
337 338 5.012561 ACAGCCAGATCTATAAACCATCCTC 59.987 44.000 0.00 0.00 0.00 3.71
338 339 4.910304 ACAGCCAGATCTATAAACCATCCT 59.090 41.667 0.00 0.00 0.00 3.24
339 340 5.234466 ACAGCCAGATCTATAAACCATCC 57.766 43.478 0.00 0.00 0.00 3.51
340 341 8.854614 AATTACAGCCAGATCTATAAACCATC 57.145 34.615 0.00 0.00 0.00 3.51
341 342 9.646522 AAAATTACAGCCAGATCTATAAACCAT 57.353 29.630 0.00 0.00 0.00 3.55
342 343 9.474313 AAAAATTACAGCCAGATCTATAAACCA 57.526 29.630 0.00 0.00 0.00 3.67
377 378 7.176690 TCAATCATGACAGTACAGAGAACACTA 59.823 37.037 0.00 0.00 0.00 2.74
379 380 6.159293 TCAATCATGACAGTACAGAGAACAC 58.841 40.000 0.00 0.00 0.00 3.32
390 391 9.274206 CAAGATCTATTCATCAATCATGACAGT 57.726 33.333 0.00 0.00 41.56 3.55
426 436 3.583086 AGGATAACACCGATAATGGGAGG 59.417 47.826 0.00 0.00 34.73 4.30
438 448 8.910351 AATAAAGCTTCAGATAGGATAACACC 57.090 34.615 0.00 0.00 0.00 4.16
444 454 9.447157 GCTGATTAATAAAGCTTCAGATAGGAT 57.553 33.333 12.44 0.00 36.72 3.24
451 461 5.277538 GGTCGGCTGATTAATAAAGCTTCAG 60.278 44.000 17.63 1.74 37.12 3.02
454 464 3.883489 GGGTCGGCTGATTAATAAAGCTT 59.117 43.478 17.63 0.00 37.12 3.74
484 494 5.481473 TGCCCTAGAAAGAATCTTGCAAAAT 59.519 36.000 3.48 0.00 39.71 1.82
543 553 3.019564 AGCAGGAGCAATTACCAACATC 58.980 45.455 0.00 0.00 45.49 3.06
570 580 2.489722 ACGTAGTACCGAGGTCCTTTTC 59.510 50.000 0.00 0.00 41.94 2.29
592 610 7.961326 ACTAATAGTACGGAGGTCCTAAAAA 57.039 36.000 0.00 0.00 0.00 1.94
703 725 4.202253 GGAGGATGGTTGGGAAATTAATGC 60.202 45.833 0.00 0.00 0.00 3.56
740 762 3.058224 GTGCCGCCTCATTATTAACCATC 60.058 47.826 0.00 0.00 0.00 3.51
770 792 0.598680 GTGCAGCAGTATAGGCGGAG 60.599 60.000 0.00 0.00 36.08 4.63
777 799 0.545646 TGGCCATGTGCAGCAGTATA 59.454 50.000 0.00 0.00 43.89 1.47
778 800 0.323633 TTGGCCATGTGCAGCAGTAT 60.324 50.000 6.09 0.00 43.89 2.12
861 884 1.005340 GCAGTCTGCGAAGGAAGATG 58.995 55.000 9.53 0.00 31.71 2.90
866 889 0.612174 AGTAGGCAGTCTGCGAAGGA 60.612 55.000 18.44 0.00 46.21 3.36
869 898 1.506718 CGAGTAGGCAGTCTGCGAA 59.493 57.895 18.44 6.20 46.21 4.70
890 919 0.039074 CTAGAGAAGTATGGCCGCCG 60.039 60.000 4.58 0.00 0.00 6.46
902 931 6.266131 TCCGGGGTAGTATAAACTAGAGAA 57.734 41.667 0.00 0.00 38.89 2.87
906 935 4.708909 GGGATCCGGGGTAGTATAAACTAG 59.291 50.000 5.45 0.00 38.89 2.57
907 936 4.510930 GGGGATCCGGGGTAGTATAAACTA 60.511 50.000 5.45 0.00 37.15 2.24
908 937 3.514539 GGGATCCGGGGTAGTATAAACT 58.485 50.000 5.45 0.00 39.91 2.66
909 938 2.568956 GGGGATCCGGGGTAGTATAAAC 59.431 54.545 5.45 0.00 0.00 2.01
911 940 2.084300 AGGGGATCCGGGGTAGTATAA 58.916 52.381 5.45 0.00 38.33 0.98
913 942 0.872449 AAGGGGATCCGGGGTAGTAT 59.128 55.000 5.45 0.00 38.33 2.12
916 945 2.819284 GCAAGGGGATCCGGGGTAG 61.819 68.421 5.45 0.00 38.33 3.18
992 1032 0.969894 GTAGTCCTCCATATGGCGCT 59.030 55.000 17.58 13.19 34.44 5.92
1050 1090 4.353437 AGGAACGCCGTCGACCAC 62.353 66.667 10.58 0.72 39.96 4.16
1394 1474 6.544928 AATCTATACACCACACAGACATCA 57.455 37.500 0.00 0.00 0.00 3.07
1414 1495 6.201997 ACGGTTTGTGCCTTTGAATTTAAATC 59.798 34.615 0.10 0.00 0.00 2.17
1456 1559 7.174946 TGCTAGAAGTTCCCTTTGTAATGAAAG 59.825 37.037 0.00 0.00 33.42 2.62
1458 1561 6.539173 TGCTAGAAGTTCCCTTTGTAATGAA 58.461 36.000 0.00 0.00 0.00 2.57
1459 1562 6.121776 TGCTAGAAGTTCCCTTTGTAATGA 57.878 37.500 0.00 0.00 0.00 2.57
1460 1563 6.817765 TTGCTAGAAGTTCCCTTTGTAATG 57.182 37.500 0.00 0.00 0.00 1.90
1462 1565 5.944007 GGATTGCTAGAAGTTCCCTTTGTAA 59.056 40.000 0.00 0.00 0.00 2.41
1466 1569 4.936685 AGGATTGCTAGAAGTTCCCTTT 57.063 40.909 0.00 0.00 0.00 3.11
1467 1570 4.164413 GGTAGGATTGCTAGAAGTTCCCTT 59.836 45.833 0.00 0.00 0.00 3.95
1468 1571 3.712218 GGTAGGATTGCTAGAAGTTCCCT 59.288 47.826 0.00 0.00 0.00 4.20
1470 1573 5.599242 ACTAGGTAGGATTGCTAGAAGTTCC 59.401 44.000 0.00 0.00 0.00 3.62
1471 1574 6.718522 ACTAGGTAGGATTGCTAGAAGTTC 57.281 41.667 0.00 0.00 0.00 3.01
1472 1575 6.668283 TGAACTAGGTAGGATTGCTAGAAGTT 59.332 38.462 0.00 6.51 0.00 2.66
1476 1579 6.040955 CACATGAACTAGGTAGGATTGCTAGA 59.959 42.308 0.00 0.00 0.00 2.43
1477 1580 6.219473 CACATGAACTAGGTAGGATTGCTAG 58.781 44.000 0.00 0.00 0.00 3.42
1478 1581 5.453339 GCACATGAACTAGGTAGGATTGCTA 60.453 44.000 0.00 0.00 0.00 3.49
1479 1582 4.684485 GCACATGAACTAGGTAGGATTGCT 60.684 45.833 0.00 0.00 0.00 3.91
1480 1583 3.561725 GCACATGAACTAGGTAGGATTGC 59.438 47.826 0.00 0.00 0.00 3.56
1481 1584 4.769688 TGCACATGAACTAGGTAGGATTG 58.230 43.478 0.00 0.00 0.00 2.67
1483 1586 4.384208 GGTTGCACATGAACTAGGTAGGAT 60.384 45.833 0.00 0.00 0.00 3.24
1484 1587 3.055385 GGTTGCACATGAACTAGGTAGGA 60.055 47.826 0.00 0.00 0.00 2.94
1485 1588 3.270877 GGTTGCACATGAACTAGGTAGG 58.729 50.000 0.00 0.00 0.00 3.18
1487 1590 3.071747 TGTGGTTGCACATGAACTAGGTA 59.928 43.478 0.00 0.00 0.00 3.08
1489 1592 2.503331 TGTGGTTGCACATGAACTAGG 58.497 47.619 0.00 0.00 0.00 3.02
1490 1593 4.669965 CGAATGTGGTTGCACATGAACTAG 60.670 45.833 0.00 0.00 44.19 2.57
1492 1595 2.030893 CGAATGTGGTTGCACATGAACT 60.031 45.455 0.00 0.00 44.19 3.01
1494 1597 2.031245 GTCGAATGTGGTTGCACATGAA 60.031 45.455 0.00 0.00 44.19 2.57
1495 1598 1.535028 GTCGAATGTGGTTGCACATGA 59.465 47.619 0.00 0.00 44.19 3.07
1496 1599 1.536766 AGTCGAATGTGGTTGCACATG 59.463 47.619 0.00 0.00 44.19 3.21
1498 1601 1.674359 AAGTCGAATGTGGTTGCACA 58.326 45.000 0.00 0.00 39.62 4.57
1500 1603 3.190327 CCATAAAGTCGAATGTGGTTGCA 59.810 43.478 4.58 0.00 0.00 4.08
1501 1604 3.427503 CCCATAAAGTCGAATGTGGTTGC 60.428 47.826 10.14 0.00 0.00 4.17
1502 1605 3.128589 CCCCATAAAGTCGAATGTGGTTG 59.871 47.826 10.14 0.39 0.00 3.77
1505 1608 1.676006 GCCCCATAAAGTCGAATGTGG 59.324 52.381 5.51 5.51 0.00 4.17
1506 1609 2.364632 TGCCCCATAAAGTCGAATGTG 58.635 47.619 0.00 0.00 0.00 3.21
1507 1610 2.799126 TGCCCCATAAAGTCGAATGT 57.201 45.000 0.00 0.00 0.00 2.71
1508 1611 4.610945 GAATTGCCCCATAAAGTCGAATG 58.389 43.478 0.00 0.00 0.00 2.67
1510 1613 2.680841 CGAATTGCCCCATAAAGTCGAA 59.319 45.455 0.00 0.00 44.16 3.71
1513 1616 3.279434 AGACGAATTGCCCCATAAAGTC 58.721 45.455 0.00 0.00 0.00 3.01
1514 1617 3.279434 GAGACGAATTGCCCCATAAAGT 58.721 45.455 0.00 0.00 0.00 2.66
1515 1618 3.278574 TGAGACGAATTGCCCCATAAAG 58.721 45.455 0.00 0.00 0.00 1.85
1516 1619 3.358111 TGAGACGAATTGCCCCATAAA 57.642 42.857 0.00 0.00 0.00 1.40
1517 1620 3.576078 ATGAGACGAATTGCCCCATAA 57.424 42.857 0.00 0.00 0.00 1.90
1518 1621 4.698201 TTATGAGACGAATTGCCCCATA 57.302 40.909 0.00 0.00 0.00 2.74
1519 1622 3.576078 TTATGAGACGAATTGCCCCAT 57.424 42.857 0.00 0.00 0.00 4.00
1520 1623 3.576078 ATTATGAGACGAATTGCCCCA 57.424 42.857 0.00 0.00 0.00 4.96
1521 1624 7.681939 TTTATATTATGAGACGAATTGCCCC 57.318 36.000 0.00 0.00 0.00 5.80
1589 1692 8.967918 GCCCTATTTTTAAGTACTTCCTTCATT 58.032 33.333 12.39 0.00 0.00 2.57
1590 1693 7.560262 GGCCCTATTTTTAAGTACTTCCTTCAT 59.440 37.037 12.39 2.30 0.00 2.57
1591 1694 6.888088 GGCCCTATTTTTAAGTACTTCCTTCA 59.112 38.462 12.39 0.00 0.00 3.02
1592 1695 6.320672 GGGCCCTATTTTTAAGTACTTCCTTC 59.679 42.308 17.04 0.00 0.00 3.46
1593 1696 6.192773 GGGCCCTATTTTTAAGTACTTCCTT 58.807 40.000 17.04 0.00 0.00 3.36
1594 1697 5.630774 CGGGCCCTATTTTTAAGTACTTCCT 60.631 44.000 22.43 0.00 0.00 3.36
1595 1698 4.577693 CGGGCCCTATTTTTAAGTACTTCC 59.422 45.833 22.43 2.76 0.00 3.46
1596 1699 4.036027 GCGGGCCCTATTTTTAAGTACTTC 59.964 45.833 22.43 0.00 0.00 3.01
1602 1705 2.357952 GTGAGCGGGCCCTATTTTTAAG 59.642 50.000 22.43 0.92 0.00 1.85
1609 1712 1.834822 GAGAGTGAGCGGGCCCTAT 60.835 63.158 22.43 7.97 0.00 2.57
1613 1716 2.757917 AGAGAGAGTGAGCGGGCC 60.758 66.667 0.00 0.00 0.00 5.80
1616 1719 2.165234 TGAAATCAGAGAGAGTGAGCGG 59.835 50.000 0.00 0.00 0.00 5.52
1671 1774 9.860650 AAATGCAGACCATAACCTTATGTAATA 57.139 29.630 0.00 0.00 39.04 0.98
1673 1776 9.860650 ATAAATGCAGACCATAACCTTATGTAA 57.139 29.630 0.00 0.00 39.04 2.41
1678 1835 8.052748 AGAACATAAATGCAGACCATAACCTTA 58.947 33.333 0.00 0.00 32.67 2.69
1734 1891 6.382087 TGCCCTAAGACCTAAATCTGATCTA 58.618 40.000 0.00 0.00 0.00 1.98
1744 1901 3.414759 TGGAGATGCCCTAAGACCTAA 57.585 47.619 0.00 0.00 34.97 2.69
1804 1967 4.386049 GCAAATGACCGACTCCTATATTCG 59.614 45.833 0.00 0.00 0.00 3.34
1806 1969 5.290493 TGCAAATGACCGACTCCTATATT 57.710 39.130 0.00 0.00 0.00 1.28
1810 2359 1.207089 CCTGCAAATGACCGACTCCTA 59.793 52.381 0.00 0.00 0.00 2.94
1862 2412 4.161001 ACCGACACCGTTTCCTATAATTCT 59.839 41.667 0.00 0.00 0.00 2.40
1928 2478 8.827832 TTCTTTCATGATATGGTTCAAAGGAT 57.172 30.769 0.00 0.00 0.00 3.24
2045 2595 2.287909 GGAGGACATGCGCTAGAAGTAG 60.288 54.545 9.73 0.00 0.00 2.57
2110 2660 7.239972 AGTACACGCAACGTAAAAACTAAAAA 58.760 30.769 0.00 0.00 38.32 1.94
2128 2707 4.201891 ACCTAATCAAGCGTCTAGTACACG 60.202 45.833 0.00 0.00 40.35 4.49
2144 2723 5.105432 ACGGAGTAAAACTCAGGACCTAATC 60.105 44.000 11.07 0.00 46.79 1.75
2367 2960 1.131638 TCAGCCGGATAGCATTTCCT 58.868 50.000 5.05 0.00 34.23 3.36
2380 2973 1.172180 TTTCCAGCAAAGGTCAGCCG 61.172 55.000 0.00 0.00 40.50 5.52
2445 3787 4.385825 TGAGGAAACACGAGCATAAACTT 58.614 39.130 0.00 0.00 0.00 2.66
2463 3805 4.932146 ACAACACGAAGGAATTTTTGAGG 58.068 39.130 0.00 0.00 0.00 3.86
2471 3813 4.196193 TCTTCACAACAACACGAAGGAAT 58.804 39.130 0.00 0.00 36.39 3.01
2487 3829 5.473796 TTTAAGGTTGACACGTTCTTCAC 57.526 39.130 0.00 0.00 33.11 3.18
2489 3831 7.858583 AGTTATTTAAGGTTGACACGTTCTTC 58.141 34.615 0.00 0.00 33.11 2.87
2490 3832 7.797038 AGTTATTTAAGGTTGACACGTTCTT 57.203 32.000 0.00 0.00 33.11 2.52
2492 3834 9.934190 TTTTAGTTATTTAAGGTTGACACGTTC 57.066 29.630 0.00 0.00 33.11 3.95
2510 3870 9.658475 CGAACATTTTGATGACAGTTTTAGTTA 57.342 29.630 0.00 0.00 0.00 2.24
2537 3897 2.348362 CGCTGCGAGAATGTGACATTTA 59.652 45.455 18.66 0.00 0.00 1.40
2563 3923 5.369833 TCTAGAACCCTCTTATCTCACGAG 58.630 45.833 0.00 0.00 32.70 4.18
2567 3927 5.519808 TGCTTCTAGAACCCTCTTATCTCA 58.480 41.667 0.00 0.00 32.70 3.27
2568 3928 6.097696 ACTTGCTTCTAGAACCCTCTTATCTC 59.902 42.308 0.00 0.00 32.70 2.75
2600 3965 3.238441 GCTAGCTAGCTGTAATGCGTAG 58.762 50.000 33.71 13.74 45.62 3.51
2601 3966 3.284323 GCTAGCTAGCTGTAATGCGTA 57.716 47.619 33.71 2.47 45.62 4.42
2614 3979 0.535780 GCATGTGCATGGGCTAGCTA 60.536 55.000 15.72 4.59 41.91 3.32
2719 4271 5.368145 TGGGATTCTATTTCTCATTCACGG 58.632 41.667 0.00 0.00 0.00 4.94
2723 4275 8.688747 AATCACTGGGATTCTATTTCTCATTC 57.311 34.615 0.00 0.00 42.62 2.67
2773 4465 2.558378 CTCATCTGACAATCGGCACAT 58.442 47.619 0.00 0.00 0.00 3.21
2774 4466 1.405933 CCTCATCTGACAATCGGCACA 60.406 52.381 0.00 0.00 0.00 4.57
2775 4467 1.293924 CCTCATCTGACAATCGGCAC 58.706 55.000 0.00 0.00 0.00 5.01
2776 4468 0.178767 CCCTCATCTGACAATCGGCA 59.821 55.000 0.00 0.00 0.00 5.69
2777 4469 1.162800 GCCCTCATCTGACAATCGGC 61.163 60.000 0.00 0.00 0.00 5.54
2778 4470 0.877649 CGCCCTCATCTGACAATCGG 60.878 60.000 0.00 0.00 0.00 4.18
2779 4471 1.493950 GCGCCCTCATCTGACAATCG 61.494 60.000 0.00 0.00 0.00 3.34
2780 4472 0.179062 AGCGCCCTCATCTGACAATC 60.179 55.000 2.29 0.00 0.00 2.67
2815 4507 1.068472 GCCCCGTCGTAGATCATGTAG 60.068 57.143 0.00 0.00 40.67 2.74
2876 4568 0.038599 ATGCTGATGAGGTGGTGCAA 59.961 50.000 0.00 0.00 34.07 4.08
2941 4633 9.705290 GAGAAGAAGAAGAAGAAATACTCAAGT 57.295 33.333 0.00 0.00 0.00 3.16
2972 4668 0.389948 CACCGAACACAGGGCTAGAC 60.390 60.000 0.00 0.00 0.00 2.59
3030 4728 2.510691 CGTACGCCGCCCAAGATT 60.511 61.111 0.52 0.00 0.00 2.40
3197 4895 1.211457 GGAACAGGATCATGAGGTGCT 59.789 52.381 15.42 0.00 0.00 4.40
3198 4896 1.673168 GGAACAGGATCATGAGGTGC 58.327 55.000 15.42 0.42 0.00 5.01
3199 4897 1.133976 GGGGAACAGGATCATGAGGTG 60.134 57.143 15.42 0.78 0.00 4.00
3483 5201 2.956964 CTCGTCGCCATCGCCTTC 60.957 66.667 0.00 0.00 35.26 3.46
3661 5379 9.919348 GATTAATGCGCTAGATAGTAGTACTAC 57.081 37.037 23.03 23.03 32.84 2.73
3667 5385 6.249471 CACACGATTAATGCGCTAGATAGTAG 59.751 42.308 9.73 0.00 0.00 2.57
3679 5401 1.459450 ACCCACCACACGATTAATGC 58.541 50.000 0.00 0.00 0.00 3.56
3847 5569 6.852420 TCTTATATTATGGGACGAAGGGAG 57.148 41.667 0.00 0.00 0.00 4.30
3848 5570 6.294899 CGTTCTTATATTATGGGACGAAGGGA 60.295 42.308 0.00 0.00 0.00 4.20
3849 5571 5.867716 CGTTCTTATATTATGGGACGAAGGG 59.132 44.000 0.00 0.00 0.00 3.95
3850 5572 6.453092 ACGTTCTTATATTATGGGACGAAGG 58.547 40.000 14.76 0.00 0.00 3.46
3851 5573 7.941795 AACGTTCTTATATTATGGGACGAAG 57.058 36.000 14.76 0.00 0.00 3.79
3852 5574 8.721019 AAAACGTTCTTATATTATGGGACGAA 57.279 30.769 0.00 0.00 0.00 3.85
3853 5575 8.605746 CAAAAACGTTCTTATATTATGGGACGA 58.394 33.333 0.00 0.00 0.00 4.20
3854 5576 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
3855 5577 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3856 5578 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3866 5588 9.316730 ACTACACTAATGTCAAAAACGTTCTTA 57.683 29.630 0.00 0.00 40.48 2.10
3867 5589 8.120465 CACTACACTAATGTCAAAAACGTTCTT 58.880 33.333 0.00 0.00 40.48 2.52
3868 5590 7.279313 ACACTACACTAATGTCAAAAACGTTCT 59.721 33.333 0.00 0.00 40.48 3.01
3869 5591 7.404203 ACACTACACTAATGTCAAAAACGTTC 58.596 34.615 0.00 0.00 40.48 3.95
3870 5592 7.311364 ACACTACACTAATGTCAAAAACGTT 57.689 32.000 0.00 0.00 40.48 3.99
3871 5593 6.913873 ACACTACACTAATGTCAAAAACGT 57.086 33.333 0.00 0.00 40.48 3.99
3879 5601 6.940714 ACGTTTTTGACACTACACTAATGTC 58.059 36.000 0.00 0.00 42.54 3.06
3880 5602 6.913873 ACGTTTTTGACACTACACTAATGT 57.086 33.333 0.00 0.00 43.30 2.71
3881 5603 7.627340 AGAACGTTTTTGACACTACACTAATG 58.373 34.615 0.46 0.00 0.00 1.90
3882 5604 7.781548 AGAACGTTTTTGACACTACACTAAT 57.218 32.000 0.46 0.00 0.00 1.73
3883 5605 7.599630 AAGAACGTTTTTGACACTACACTAA 57.400 32.000 0.46 0.00 0.00 2.24
3884 5606 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
3885 5607 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
3911 5633 9.582431 CGAATAACTACTTCCTTTGTCTCATAA 57.418 33.333 0.00 0.00 0.00 1.90
3912 5634 8.195436 CCGAATAACTACTTCCTTTGTCTCATA 58.805 37.037 0.00 0.00 0.00 2.15
3913 5635 7.042335 CCGAATAACTACTTCCTTTGTCTCAT 58.958 38.462 0.00 0.00 0.00 2.90
3914 5636 6.395629 CCGAATAACTACTTCCTTTGTCTCA 58.604 40.000 0.00 0.00 0.00 3.27
3915 5637 5.291371 GCCGAATAACTACTTCCTTTGTCTC 59.709 44.000 0.00 0.00 0.00 3.36
3916 5638 5.046520 AGCCGAATAACTACTTCCTTTGTCT 60.047 40.000 0.00 0.00 0.00 3.41
3917 5639 5.176592 AGCCGAATAACTACTTCCTTTGTC 58.823 41.667 0.00 0.00 0.00 3.18
3918 5640 5.161943 AGCCGAATAACTACTTCCTTTGT 57.838 39.130 0.00 0.00 0.00 2.83
3919 5641 5.175859 TGAGCCGAATAACTACTTCCTTTG 58.824 41.667 0.00 0.00 0.00 2.77
3920 5642 5.416271 TGAGCCGAATAACTACTTCCTTT 57.584 39.130 0.00 0.00 0.00 3.11
3921 5643 5.128827 TGATGAGCCGAATAACTACTTCCTT 59.871 40.000 0.00 0.00 0.00 3.36
3922 5644 4.649674 TGATGAGCCGAATAACTACTTCCT 59.350 41.667 0.00 0.00 0.00 3.36
3923 5645 4.945246 TGATGAGCCGAATAACTACTTCC 58.055 43.478 0.00 0.00 0.00 3.46
3924 5646 6.701841 TCATTGATGAGCCGAATAACTACTTC 59.298 38.462 0.00 0.00 32.11 3.01
3925 5647 6.582636 TCATTGATGAGCCGAATAACTACTT 58.417 36.000 0.00 0.00 32.11 2.24
3926 5648 6.161855 TCATTGATGAGCCGAATAACTACT 57.838 37.500 0.00 0.00 32.11 2.57
3927 5649 7.171508 TGAATCATTGATGAGCCGAATAACTAC 59.828 37.037 0.00 0.00 40.64 2.73
3928 5650 7.216494 TGAATCATTGATGAGCCGAATAACTA 58.784 34.615 0.00 0.00 40.64 2.24
3929 5651 6.057533 TGAATCATTGATGAGCCGAATAACT 58.942 36.000 0.00 0.00 40.64 2.24
3936 5658 2.287427 GCCTTGAATCATTGATGAGCCG 60.287 50.000 0.00 0.00 40.64 5.52
3947 5669 4.206375 TCTTGTTTGTCAGCCTTGAATCA 58.794 39.130 0.00 0.00 34.49 2.57
3962 5684 6.862209 TGTTGCTATTTTGTGTCTCTTGTTT 58.138 32.000 0.00 0.00 0.00 2.83
3970 5692 6.456449 CGGGTAGTATGTTGCTATTTTGTGTC 60.456 42.308 0.00 0.00 0.00 3.67
3978 5700 4.442472 GGTTCACGGGTAGTATGTTGCTAT 60.442 45.833 0.00 0.00 0.00 2.97
3979 5701 3.119029 GGTTCACGGGTAGTATGTTGCTA 60.119 47.826 0.00 0.00 0.00 3.49
3980 5702 2.354403 GGTTCACGGGTAGTATGTTGCT 60.354 50.000 0.00 0.00 0.00 3.91
3981 5703 2.004733 GGTTCACGGGTAGTATGTTGC 58.995 52.381 0.00 0.00 0.00 4.17
3982 5704 2.094597 TCGGTTCACGGGTAGTATGTTG 60.095 50.000 0.00 0.00 44.45 3.33
3983 5705 2.170166 TCGGTTCACGGGTAGTATGTT 58.830 47.619 0.00 0.00 44.45 2.71
3984 5706 1.838112 TCGGTTCACGGGTAGTATGT 58.162 50.000 0.00 0.00 44.45 2.29
3985 5707 2.925563 GTTTCGGTTCACGGGTAGTATG 59.074 50.000 0.00 0.00 44.45 2.39
3986 5708 2.562298 TGTTTCGGTTCACGGGTAGTAT 59.438 45.455 0.00 0.00 44.45 2.12
3987 5709 1.959985 TGTTTCGGTTCACGGGTAGTA 59.040 47.619 0.00 0.00 44.45 1.82
3988 5710 0.752054 TGTTTCGGTTCACGGGTAGT 59.248 50.000 0.00 0.00 44.45 2.73
3989 5711 1.142474 GTGTTTCGGTTCACGGGTAG 58.858 55.000 0.00 0.00 44.45 3.18
3990 5712 0.249826 GGTGTTTCGGTTCACGGGTA 60.250 55.000 0.00 0.00 44.45 3.69
4080 6107 3.115554 CTGTTTGAAAAGTTGAAGGCCG 58.884 45.455 0.00 0.00 0.00 6.13
4151 6201 4.876679 GCTTGGTAAACTATTCAGAGGGAC 59.123 45.833 0.00 0.00 0.00 4.46
4201 6253 1.271379 GCTCCTAAAACCTGTGGCTCA 60.271 52.381 0.00 0.00 0.00 4.26
4240 6292 1.032014 TCAAACAGCTTTGTCCTGGC 58.968 50.000 0.00 0.00 38.38 4.85
4332 6391 2.814336 TGTATTTGTACGCATGTGCCAA 59.186 40.909 6.08 7.01 37.91 4.52
4345 6404 5.680594 ATCATGCCCAATTGTGTATTTGT 57.319 34.783 4.43 0.00 0.00 2.83
4361 6420 2.733227 CGGGCAAACAGAAGAATCATGC 60.733 50.000 0.00 0.00 0.00 4.06
4382 6441 6.487299 AGAAGGTTAGTGATGAATAGGACC 57.513 41.667 0.00 0.00 0.00 4.46
4394 6453 7.625185 GCAGAAGCAGAAATTAGAAGGTTAGTG 60.625 40.741 0.00 0.00 41.58 2.74
4395 6454 6.372937 GCAGAAGCAGAAATTAGAAGGTTAGT 59.627 38.462 0.00 0.00 41.58 2.24
4439 6498 1.469308 AGAGGAAGCGACAAGACGTAG 59.531 52.381 0.00 0.00 35.59 3.51
4482 6541 5.048991 AGACCTAAAATGGTGTGCTTAAACG 60.049 40.000 0.00 0.00 41.00 3.60
4494 6553 1.812571 AGCAACGCAGACCTAAAATGG 59.187 47.619 0.00 0.00 0.00 3.16
4501 6560 0.244994 CTAGACAGCAACGCAGACCT 59.755 55.000 0.00 0.00 0.00 3.85
4506 6565 1.667830 GCACCTAGACAGCAACGCA 60.668 57.895 0.00 0.00 0.00 5.24
4510 6569 0.036732 CCCAAGCACCTAGACAGCAA 59.963 55.000 0.00 0.00 0.00 3.91
4567 6634 1.202604 GGTTCACGGGTCTGTTGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
4585 6652 7.556733 TTTAACAAGTTACTGATGTTTCGGT 57.443 32.000 7.60 0.00 43.91 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.