Multiple sequence alignment - TraesCS3A01G178600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G178600 chr3A 100.000 6512 0 0 1 6512 203660135 203653624 0.000000e+00 12026.0
1 TraesCS3A01G178600 chr3D 94.937 4701 146 34 1 4631 165739433 165734755 0.000000e+00 7278.0
2 TraesCS3A01G178600 chr3D 95.120 1045 49 1 4745 5787 165734614 165733570 0.000000e+00 1646.0
3 TraesCS3A01G178600 chr3D 97.297 37 1 0 4634 4670 165734731 165734695 5.450000e-06 63.9
4 TraesCS3A01G178600 chr3B 96.783 3481 75 12 313 3780 241397725 241394269 0.000000e+00 5773.0
5 TraesCS3A01G178600 chr3B 96.423 2768 60 16 3771 6512 241393050 241390296 0.000000e+00 4527.0
6 TraesCS3A01G178600 chr3B 91.554 296 11 2 1 283 241398231 241397937 4.730000e-106 396.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G178600 chr3A 203653624 203660135 6511 True 12026.000000 12026 100.000000 1 6512 1 chr3A.!!$R1 6511
1 TraesCS3A01G178600 chr3D 165733570 165739433 5863 True 2995.966667 7278 95.784667 1 5787 3 chr3D.!!$R1 5786
2 TraesCS3A01G178600 chr3B 241390296 241398231 7935 True 3565.333333 5773 94.920000 1 6512 3 chr3B.!!$R1 6511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 640 2.390938 TCGTTCATGTCACGAGTTGTC 58.609 47.619 15.82 0.0 41.66 3.18 F
1117 1319 0.662619 TGCTTCTCAAAACTGCACGG 59.337 50.000 0.00 0.0 0.00 4.94 F
2266 2485 0.322322 CCCCGCTGTAGGTGTGTTAA 59.678 55.000 0.00 0.0 0.00 2.01 F
2967 3188 0.599991 TGCTCGCATAAGCATACGGG 60.600 55.000 1.57 0.0 47.00 5.28 F
4812 6333 0.687354 AGATTGGGCAGTTGTCGACT 59.313 50.000 17.92 0.0 39.89 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 1918 1.609208 GAGAAACTGCTTGCCTTCCA 58.391 50.000 0.00 0.0 0.00 3.53 R
2789 3008 2.433436 ACGGCAAACCTTAGTGGAATC 58.567 47.619 0.00 0.0 39.71 2.52 R
4074 5537 0.322187 ACATCCCTTTACCCACGTGC 60.322 55.000 10.91 0.0 0.00 5.34 R
4893 6414 2.380084 TCGAAAGAATGAACCCTCCG 57.620 50.000 0.00 0.0 37.03 4.63 R
6408 7933 0.101219 GCGGCCATTGGATGAAGAAC 59.899 55.000 6.95 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.013220 TCTAGGGAGCAAGTATATCACAGAAT 58.987 38.462 0.00 0.00 0.00 2.40
288 302 3.181490 TGCGCTCTCTTCTAATCGCTAAA 60.181 43.478 9.73 0.00 42.58 1.85
295 309 7.387119 TCTCTTCTAATCGCTAAACTGTACA 57.613 36.000 0.00 0.00 0.00 2.90
301 315 8.048534 TCTAATCGCTAAACTGTACAGTACTT 57.951 34.615 28.13 21.02 41.58 2.24
302 316 6.946229 AATCGCTAAACTGTACAGTACTTG 57.054 37.500 28.13 18.75 41.58 3.16
319 521 5.898397 AGTACTTGTCTACCTATCCCTTTCC 59.102 44.000 0.00 0.00 0.00 3.13
328 530 4.449389 ACCTATCCCTTTCCCTTCTCTTT 58.551 43.478 0.00 0.00 0.00 2.52
387 589 8.718102 TGTAGAAGTTTTAATTAGGCTGCTAG 57.282 34.615 0.00 0.00 0.00 3.42
438 640 2.390938 TCGTTCATGTCACGAGTTGTC 58.609 47.619 15.82 0.00 41.66 3.18
446 648 2.431419 TGTCACGAGTTGTCCCTGTTAA 59.569 45.455 0.00 0.00 0.00 2.01
570 772 5.967088 TGAACTTCTACAATAGCTCAGGTC 58.033 41.667 0.00 0.00 0.00 3.85
653 855 4.202161 ACTGAGTTTGAAAGAAGCGAGAGA 60.202 41.667 0.00 0.00 0.00 3.10
658 860 4.433186 TTGAAAGAAGCGAGAGAGAGAG 57.567 45.455 0.00 0.00 0.00 3.20
924 1126 3.326006 AGAAATCAGAGAGCACCAGACAA 59.674 43.478 0.00 0.00 0.00 3.18
1113 1315 6.038050 AGCTTATCTATGCTTCTCAAAACTGC 59.962 38.462 0.00 0.00 35.86 4.40
1114 1316 6.183360 GCTTATCTATGCTTCTCAAAACTGCA 60.183 38.462 0.00 0.00 38.05 4.41
1115 1317 5.557891 ATCTATGCTTCTCAAAACTGCAC 57.442 39.130 0.00 0.00 36.44 4.57
1116 1318 2.693797 ATGCTTCTCAAAACTGCACG 57.306 45.000 0.00 0.00 36.44 5.34
1117 1319 0.662619 TGCTTCTCAAAACTGCACGG 59.337 50.000 0.00 0.00 0.00 4.94
1118 1320 0.663153 GCTTCTCAAAACTGCACGGT 59.337 50.000 0.00 0.00 0.00 4.83
1119 1321 1.597937 GCTTCTCAAAACTGCACGGTG 60.598 52.381 3.15 3.15 0.00 4.94
1120 1322 1.939934 CTTCTCAAAACTGCACGGTGA 59.060 47.619 13.29 0.00 0.00 4.02
1121 1323 1.581934 TCTCAAAACTGCACGGTGAG 58.418 50.000 13.29 8.96 37.62 3.51
1122 1324 1.134521 TCTCAAAACTGCACGGTGAGT 60.135 47.619 13.29 9.59 37.55 3.41
1162 1374 2.485814 GCTCAATGGTTCAGAGTTGGAC 59.514 50.000 0.00 0.00 31.51 4.02
1172 1385 8.867474 TGGTTCAGAGTTGGACTTTGATCCAG 62.867 46.154 19.40 0.00 45.97 3.86
1699 1918 2.784654 CCGGATCTCCCTCCCCTCT 61.785 68.421 0.00 0.00 31.04 3.69
2206 2425 1.331214 AAGTGGTTCAGCATGGTTGG 58.669 50.000 0.00 0.00 36.16 3.77
2251 2470 1.876156 GCTATTCAATCTGAAGCCCCG 59.124 52.381 0.00 0.00 40.05 5.73
2266 2485 0.322322 CCCCGCTGTAGGTGTGTTAA 59.678 55.000 0.00 0.00 0.00 2.01
2286 2505 7.007367 GTGTTAATATGTCACATTCACAAAGCG 59.993 37.037 0.00 0.00 33.04 4.68
2290 2509 1.333619 GTCACATTCACAAAGCGGTGT 59.666 47.619 6.19 0.00 39.76 4.16
2318 2537 9.539825 TCATATCTTCTGTCTTAAGCAAAGATC 57.460 33.333 22.02 0.00 45.84 2.75
2449 2668 5.046520 ACTGTACCTGGTCTTGAAATACCTC 60.047 44.000 0.63 0.00 36.67 3.85
2673 2892 6.821665 TGGAGTTTATATAGCTGAACACCAAC 59.178 38.462 10.14 0.00 38.95 3.77
2695 2914 3.181475 CGCATACTATGGAGTGGTGAAGT 60.181 47.826 0.00 0.00 36.28 3.01
2789 3008 8.174733 AGAATGATGAATAACCAAATAGCCAG 57.825 34.615 0.00 0.00 0.00 4.85
2847 3066 3.411446 AGAATGTCGTGGCAGAATTCAA 58.589 40.909 8.44 0.00 31.15 2.69
2967 3188 0.599991 TGCTCGCATAAGCATACGGG 60.600 55.000 1.57 0.00 47.00 5.28
3023 3244 2.024176 AACAAGACGAGCAACTGTGT 57.976 45.000 0.00 0.00 0.00 3.72
3590 3825 6.693315 TTGTAGAAAAGGAAACTGAACAGG 57.307 37.500 6.76 0.00 42.68 4.00
3645 3880 1.206371 ACGGCGTCCACTTATAAAGCT 59.794 47.619 6.77 0.00 0.00 3.74
4074 5537 8.467402 ACATTTCTATAGTTCTTCACAACGAG 57.533 34.615 0.00 0.00 0.00 4.18
4319 5782 9.533253 AAAATTCAAGGACTTCATTACAGTTTG 57.467 29.630 0.00 0.00 0.00 2.93
4488 5982 2.166907 TTTGGAGCCAACTTCCCAAA 57.833 45.000 0.50 0.00 43.85 3.28
4621 6115 7.715249 TCATTTGCAACTACCTACATTCCTATC 59.285 37.037 0.00 0.00 0.00 2.08
4631 6125 5.243283 ACCTACATTCCTATCCGTATCACAC 59.757 44.000 0.00 0.00 0.00 3.82
4632 6126 4.602340 ACATTCCTATCCGTATCACACC 57.398 45.455 0.00 0.00 0.00 4.16
4697 6212 8.775220 TTGTTAACAGTTCAATTGTACAATCG 57.225 30.769 21.02 10.94 27.75 3.34
4700 6215 6.627395 AACAGTTCAATTGTACAATCGGAA 57.373 33.333 21.02 21.70 0.00 4.30
4711 6226 5.547465 TGTACAATCGGAATGAAGTGTCTT 58.453 37.500 0.00 0.00 32.76 3.01
4812 6333 0.687354 AGATTGGGCAGTTGTCGACT 59.313 50.000 17.92 0.00 39.89 4.18
5148 6669 7.050377 ACATGAGTGTAGCAGCTAACATAAAT 58.950 34.615 2.87 0.00 36.63 1.40
5238 6759 1.287442 TGGCATTACCATGGTGGATGT 59.713 47.619 28.97 12.01 46.36 3.06
5798 7321 7.889469 ACAAAGTCTAAGAATCAAATGTGCAT 58.111 30.769 0.00 0.00 0.00 3.96
5810 7333 2.133281 ATGTGCATACAGTGGCATGT 57.867 45.000 5.17 0.00 42.75 3.21
5813 7336 3.416156 TGTGCATACAGTGGCATGTTAA 58.584 40.909 5.17 0.00 42.75 2.01
5814 7337 3.190327 TGTGCATACAGTGGCATGTTAAC 59.810 43.478 0.00 0.00 42.75 2.01
5831 7354 9.982291 GCATGTTAACGAGAATTACAGAAAATA 57.018 29.630 0.26 0.00 0.00 1.40
5854 7377 0.032403 ACAACGTAGCGGCAAGTACA 59.968 50.000 1.45 0.00 0.00 2.90
5974 7497 5.051240 GGAAGCGTGTATATTTGTCGTTAGG 60.051 44.000 0.00 0.00 0.00 2.69
6031 7555 2.296692 CTTGGCGCCACGAAATCGAG 62.297 60.000 32.95 17.96 43.02 4.04
6065 7589 4.009675 GGTTCCAGTGCAAATCTATGACA 58.990 43.478 0.00 0.00 0.00 3.58
6066 7590 4.095483 GGTTCCAGTGCAAATCTATGACAG 59.905 45.833 0.00 0.00 0.00 3.51
6067 7591 3.877559 TCCAGTGCAAATCTATGACAGG 58.122 45.455 0.00 0.00 0.00 4.00
6068 7592 2.947652 CCAGTGCAAATCTATGACAGGG 59.052 50.000 0.00 0.00 0.00 4.45
6173 7697 3.114616 CTCCACCGAAGCACGCTG 61.115 66.667 0.00 0.00 41.07 5.18
6220 7745 1.731709 TGTTGATCAATTGACGAGGCG 59.268 47.619 11.07 0.00 0.00 5.52
6221 7746 0.726827 TTGATCAATTGACGAGGCGC 59.273 50.000 11.07 0.00 0.00 6.53
6222 7747 1.089481 TGATCAATTGACGAGGCGCC 61.089 55.000 21.89 21.89 0.00 6.53
6223 7748 2.094126 GATCAATTGACGAGGCGCCG 62.094 60.000 23.20 13.22 0.00 6.46
6224 7749 4.520846 CAATTGACGAGGCGCCGC 62.521 66.667 23.20 22.30 0.00 6.53
6271 7796 4.179579 GGCGCATCGGAAGTTGGC 62.180 66.667 10.83 0.00 0.00 4.52
6340 7865 0.732880 ATTGACGCGTCTTGACGGAG 60.733 55.000 36.27 9.27 0.00 4.63
6367 7892 2.892425 GATGCCAAGAGGACGCGG 60.892 66.667 12.47 0.00 36.89 6.46
6388 7913 1.706995 ATGGCTGCTCCCTCTCCATG 61.707 60.000 0.00 0.00 36.29 3.66
6403 7928 3.647367 ATGCTCCCTACCGCATGT 58.353 55.556 0.00 0.00 44.53 3.21
6408 7933 1.086696 CTCCCTACCGCATGTTGTTG 58.913 55.000 0.00 0.00 0.00 3.33
6409 7934 0.398696 TCCCTACCGCATGTTGTTGT 59.601 50.000 0.00 0.00 0.00 3.32
6410 7935 1.202830 TCCCTACCGCATGTTGTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
6431 7956 1.446516 TTCATCCAATGGCCGCATCG 61.447 55.000 0.00 0.00 0.00 3.84
6451 7976 1.789576 ATTTCCACGCCCAAGTCCCT 61.790 55.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.656632 TTCTGTGATATACTTGCTCCCTAG 57.343 41.667 0.00 0.00 0.00 3.02
36 37 7.792032 TCTGTGAGAGACTTCTTTAGGAAAAA 58.208 34.615 0.00 0.00 32.53 1.94
269 283 5.344884 ACAGTTTAGCGATTAGAAGAGAGC 58.655 41.667 0.00 0.00 0.00 4.09
274 288 8.182881 AGTACTGTACAGTTTAGCGATTAGAAG 58.817 37.037 32.15 0.00 42.54 2.85
288 302 6.827762 GGATAGGTAGACAAGTACTGTACAGT 59.172 42.308 30.13 30.13 45.02 3.55
295 309 5.898397 GGAAAGGGATAGGTAGACAAGTACT 59.102 44.000 0.00 0.00 0.00 2.73
301 315 4.015541 AGAAGGGAAAGGGATAGGTAGACA 60.016 45.833 0.00 0.00 0.00 3.41
302 316 4.558715 AGAAGGGAAAGGGATAGGTAGAC 58.441 47.826 0.00 0.00 0.00 2.59
319 521 1.172175 GCTTGGCTGGAAAGAGAAGG 58.828 55.000 0.00 0.00 0.00 3.46
328 530 2.436109 GAACCTGGCTTGGCTGGA 59.564 61.111 22.73 0.00 0.00 3.86
387 589 3.515286 ATGCCAGCACTGCGATGC 61.515 61.111 3.87 3.87 46.50 3.91
403 605 6.855836 ACATGAACGAGCATCAATTTTACAT 58.144 32.000 0.00 0.00 33.17 2.29
438 640 5.163513 GCAGATGATTTTGTGTTAACAGGG 58.836 41.667 8.98 0.00 37.67 4.45
446 648 3.879295 CCCTATCGCAGATGATTTTGTGT 59.121 43.478 1.97 0.00 45.12 3.72
546 748 6.211584 AGACCTGAGCTATTGTAGAAGTTCAA 59.788 38.462 5.50 0.00 33.36 2.69
570 772 8.139989 AGATTTTGAAGAATGTCCACTTTTCAG 58.860 33.333 0.00 0.00 0.00 3.02
626 828 3.309682 CGCTTCTTTCAAACTCAGTGACA 59.690 43.478 0.00 0.00 0.00 3.58
653 855 4.746089 GCCCTGATTTACATGCATCTCTCT 60.746 45.833 0.00 0.00 0.00 3.10
658 860 1.267806 CCGCCCTGATTTACATGCATC 59.732 52.381 0.00 0.00 0.00 3.91
813 1015 6.333416 TGAGAGAGCTATTGTGTACATTCAC 58.667 40.000 0.00 0.00 38.63 3.18
924 1126 1.070134 TGACTCTGCGTACTTGCCTTT 59.930 47.619 0.00 0.00 0.00 3.11
1113 1315 2.567049 GGGAGACGACTCACCGTG 59.433 66.667 16.47 0.00 43.49 4.94
1117 1319 2.125773 TTCTAGGGGAGACGACTCAC 57.874 55.000 16.47 12.88 45.04 3.51
1118 1320 2.893215 TTTCTAGGGGAGACGACTCA 57.107 50.000 16.47 0.00 44.22 3.41
1162 1374 2.163010 AGCAAACATCGCTGGATCAAAG 59.837 45.455 0.00 0.00 38.60 2.77
1172 1385 4.504097 AGAAACAAAGAAAGCAAACATCGC 59.496 37.500 0.00 0.00 0.00 4.58
1289 1505 4.606961 CAAGTTGCCTTTGTTATCAACGT 58.393 39.130 0.00 0.00 42.42 3.99
1408 1624 6.662414 TGGAAATGACGCTTTCTTATGTAG 57.338 37.500 5.90 0.00 35.81 2.74
1513 1729 7.561356 TCTTCCTCTTTTTCATCAGGTTTCTTT 59.439 33.333 0.00 0.00 0.00 2.52
1699 1918 1.609208 GAGAAACTGCTTGCCTTCCA 58.391 50.000 0.00 0.00 0.00 3.53
2020 2239 4.924305 AGCTGAAAACATGACACATTGT 57.076 36.364 0.00 0.00 0.00 2.71
2206 2425 7.547370 GCTGTGAAATATCCTGGTATATCTGAC 59.453 40.741 0.00 0.00 0.00 3.51
2251 2470 5.872617 TGTGACATATTAACACACCTACAGC 59.127 40.000 0.00 0.00 39.17 4.40
2266 2485 4.009675 ACCGCTTTGTGAATGTGACATAT 58.990 39.130 0.00 0.00 0.00 1.78
2286 2505 7.334421 TGCTTAAGACAGAAGATATGAAACACC 59.666 37.037 6.67 0.00 0.00 4.16
2290 2509 9.725019 TCTTTGCTTAAGACAGAAGATATGAAA 57.275 29.630 6.67 0.00 37.96 2.69
2318 2537 5.201713 TCTTTAGTGTTGAGACTGGTCTG 57.798 43.478 8.06 0.00 40.61 3.51
2449 2668 4.213270 TGACAAATCTCCAGTTAAAGCGTG 59.787 41.667 0.00 0.00 0.00 5.34
2665 2884 3.055385 ACTCCATAGTATGCGTTGGTGTT 60.055 43.478 4.47 0.00 33.44 3.32
2673 2892 3.181475 ACTTCACCACTCCATAGTATGCG 60.181 47.826 4.47 0.89 33.48 4.73
2695 2914 7.433708 TTTTCTTCGATGCTCATTTTCAGTA 57.566 32.000 0.00 0.00 0.00 2.74
2789 3008 2.433436 ACGGCAAACCTTAGTGGAATC 58.567 47.619 0.00 0.00 39.71 2.52
2847 3066 7.944729 AAAACTCAGATACTGCAATGGTTAT 57.055 32.000 0.00 0.00 0.00 1.89
3003 3224 3.120792 GACACAGTTGCTCGTCTTGTTA 58.879 45.455 0.00 0.00 0.00 2.41
3023 3244 4.899457 ACATGATAGGTTCGGTCCAATAGA 59.101 41.667 0.00 0.00 0.00 1.98
3061 3282 7.460071 TGGTTACAAACTTATAAGGCCTTACA 58.540 34.615 27.46 14.25 0.00 2.41
3219 3440 0.957395 CTTCAAGCAGCCCATCACGT 60.957 55.000 0.00 0.00 0.00 4.49
3645 3880 1.971481 AAGGCGCATATGCTCATCAA 58.029 45.000 24.56 0.00 39.32 2.57
3671 3906 8.550376 GCAAAATTATTGACAAACACAGTCATT 58.450 29.630 0.00 0.00 44.66 2.57
4006 5469 1.442526 GGTCCAATGCCGCTGATCAG 61.443 60.000 18.84 18.84 0.00 2.90
4074 5537 0.322187 ACATCCCTTTACCCACGTGC 60.322 55.000 10.91 0.00 0.00 5.34
4319 5782 4.142315 ACTGAAATGCACCATGATACTTGC 60.142 41.667 0.00 0.00 35.45 4.01
4363 5826 8.577939 CATGATACTTTTGTAAACTGAAATGCG 58.422 33.333 0.00 0.00 38.54 4.73
4488 5982 8.846211 TGCAAACTAAAGCTTAACAGATAAAGT 58.154 29.630 0.00 0.00 0.00 2.66
4621 6115 4.129380 ACATTGATGATGGTGTGATACGG 58.871 43.478 0.00 0.00 40.21 4.02
4679 6194 6.841119 TCATTCCGATTGTACAATTGAACTG 58.159 36.000 29.84 23.95 34.78 3.16
4700 6215 9.120538 TGCTTAAGTTTTTCTAAGACACTTCAT 57.879 29.630 4.02 0.00 0.00 2.57
4711 6226 9.515226 AAGTGGACATATGCTTAAGTTTTTCTA 57.485 29.630 1.58 0.00 0.00 2.10
4893 6414 2.380084 TCGAAAGAATGAACCCTCCG 57.620 50.000 0.00 0.00 37.03 4.63
5064 6585 5.220873 GGGAGTGAAGTTTGAGAAAGTGTTC 60.221 44.000 0.00 0.00 0.00 3.18
5148 6669 5.753438 GTCATTTGTATGCTTCGGTATCAGA 59.247 40.000 0.00 0.00 0.00 3.27
5238 6759 1.702401 TCAACCACCTTGCCTACATGA 59.298 47.619 0.00 0.00 0.00 3.07
5687 7210 7.806680 AAAAGGGTGGGAATGTAAATGTAAT 57.193 32.000 0.00 0.00 0.00 1.89
5798 7321 3.945981 TCTCGTTAACATGCCACTGTA 57.054 42.857 6.39 0.00 0.00 2.74
5831 7354 2.419667 ACTTGCCGCTACGTTGTAATT 58.580 42.857 0.00 0.00 0.00 1.40
5919 7442 7.702348 TCTCAACTGATATGATACGTTCTTGTG 59.298 37.037 0.00 0.00 0.00 3.33
6051 7575 3.114606 TCCTCCCTGTCATAGATTTGCA 58.885 45.455 0.00 0.00 0.00 4.08
6065 7589 0.335361 TTAGCGTCTCCTTCCTCCCT 59.665 55.000 0.00 0.00 0.00 4.20
6066 7590 1.137282 CTTTAGCGTCTCCTTCCTCCC 59.863 57.143 0.00 0.00 0.00 4.30
6067 7591 1.137282 CCTTTAGCGTCTCCTTCCTCC 59.863 57.143 0.00 0.00 0.00 4.30
6068 7592 1.471851 GCCTTTAGCGTCTCCTTCCTC 60.472 57.143 0.00 0.00 0.00 3.71
6178 7702 2.017559 ATTCCGTCTGTAGCTCCGGC 62.018 60.000 0.00 0.00 40.23 6.13
6179 7703 0.460311 AATTCCGTCTGTAGCTCCGG 59.540 55.000 0.00 0.00 41.75 5.14
6220 7745 1.192534 GTAATGCTCTAATCACGCGGC 59.807 52.381 12.47 1.15 0.00 6.53
6221 7746 1.792949 GGTAATGCTCTAATCACGCGG 59.207 52.381 12.47 0.00 0.00 6.46
6222 7747 2.218759 GTGGTAATGCTCTAATCACGCG 59.781 50.000 3.53 3.53 0.00 6.01
6223 7748 2.218759 CGTGGTAATGCTCTAATCACGC 59.781 50.000 0.00 0.00 39.59 5.34
6224 7749 3.702330 TCGTGGTAATGCTCTAATCACG 58.298 45.455 0.00 0.00 44.99 4.35
6340 7865 1.895707 CTTGGCATCGCTCATCCCC 60.896 63.158 0.00 0.00 0.00 4.81
6388 7913 0.676782 AACAACATGCGGTAGGGAGC 60.677 55.000 0.00 0.00 0.00 4.70
6403 7928 3.006752 GGCCATTGGATGAAGAACAACAA 59.993 43.478 6.95 0.00 35.26 2.83
6408 7933 0.101219 GCGGCCATTGGATGAAGAAC 59.899 55.000 6.95 0.00 0.00 3.01
6409 7934 0.323269 TGCGGCCATTGGATGAAGAA 60.323 50.000 6.95 0.00 0.00 2.52
6410 7935 0.106569 ATGCGGCCATTGGATGAAGA 60.107 50.000 6.95 0.00 0.00 2.87
6431 7956 1.313091 GGGACTTGGGCGTGGAAATC 61.313 60.000 0.00 0.00 0.00 2.17
6451 7976 1.831736 TGGGTTTTTCTTGCGGGAAAA 59.168 42.857 11.04 11.04 41.54 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.