Multiple sequence alignment - TraesCS3A01G177600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G177600 chr3A 100.000 3059 0 0 1 3059 201474148 201477206 0.000000e+00 5650.0
1 TraesCS3A01G177600 chr3A 96.618 414 10 4 280 690 655720183 655719771 0.000000e+00 684.0
2 TraesCS3A01G177600 chr3A 82.192 146 25 1 2254 2399 143139268 143139124 1.150000e-24 124.0
3 TraesCS3A01G177600 chr3D 92.769 1867 96 25 402 2247 167792092 167790244 0.000000e+00 2663.0
4 TraesCS3A01G177600 chr3D 90.722 291 15 4 1 281 167792079 167791791 8.010000e-101 377.0
5 TraesCS3A01G177600 chr3D 88.000 150 18 0 2250 2399 131004962 131004813 8.720000e-41 178.0
6 TraesCS3A01G177600 chr3B 97.238 1557 40 1 691 2247 242887927 242886374 0.000000e+00 2634.0
7 TraesCS3A01G177600 chr3B 95.385 195 7 2 4 198 242889824 242889632 2.960000e-80 309.0
8 TraesCS3A01G177600 chr3B 97.222 36 1 0 246 281 242887954 242887919 9.160000e-06 62.1
9 TraesCS3A01G177600 chr4A 97.991 647 11 1 2415 3059 211384490 211383844 0.000000e+00 1122.0
10 TraesCS3A01G177600 chr4A 97.519 645 11 3 2419 3059 211386117 211385474 0.000000e+00 1098.0
11 TraesCS3A01G177600 chr4A 82.186 247 33 8 4 244 146704930 146705171 5.170000e-48 202.0
12 TraesCS3A01G177600 chr1B 97.682 647 13 1 2415 3059 200302274 200301628 0.000000e+00 1110.0
13 TraesCS3A01G177600 chr1B 97.512 643 14 1 2419 3059 200303909 200303267 0.000000e+00 1098.0
14 TraesCS3A01G177600 chr1B 84.530 181 18 7 4 178 38291838 38292014 1.460000e-38 171.0
15 TraesCS3A01G177600 chr1B 79.518 166 34 0 2254 2419 661866070 661865905 5.360000e-23 119.0
16 TraesCS3A01G177600 chr7B 97.063 647 15 2 2415 3059 116508292 116508936 0.000000e+00 1086.0
17 TraesCS3A01G177600 chr7B 96.890 643 16 3 2419 3059 116506658 116507298 0.000000e+00 1074.0
18 TraesCS3A01G177600 chr7B 96.585 410 8 6 282 690 184247540 184247136 0.000000e+00 675.0
19 TraesCS3A01G177600 chr5D 95.846 650 22 2 2415 3059 424480025 424479376 0.000000e+00 1046.0
20 TraesCS3A01G177600 chr5D 95.194 645 26 2 2419 3058 424481689 424481045 0.000000e+00 1014.0
21 TraesCS3A01G177600 chr1D 95.975 646 21 2 2419 3059 247827446 247828091 0.000000e+00 1044.0
22 TraesCS3A01G177600 chr1D 80.545 257 37 10 4 253 33607110 33606860 5.210000e-43 185.0
23 TraesCS3A01G177600 chr1D 79.182 269 35 10 4 253 316617499 316617233 1.890000e-37 167.0
24 TraesCS3A01G177600 chr1A 96.279 430 9 5 273 698 587679156 587678730 0.000000e+00 699.0
25 TraesCS3A01G177600 chr2A 96.610 413 10 4 281 690 647341953 647342364 0.000000e+00 682.0
26 TraesCS3A01G177600 chr2A 80.120 166 33 0 2254 2419 710764849 710764684 1.150000e-24 124.0
27 TraesCS3A01G177600 chr7A 96.602 412 8 6 282 690 107600681 107600273 0.000000e+00 678.0
28 TraesCS3A01G177600 chr7A 82.500 160 27 1 2253 2412 126019304 126019146 4.110000e-29 139.0
29 TraesCS3A01G177600 chr6B 96.377 414 9 4 282 691 262468419 262468830 0.000000e+00 676.0
30 TraesCS3A01G177600 chr6B 81.545 233 39 2 21 251 39162565 39162335 4.030000e-44 189.0
31 TraesCS3A01G177600 chr6A 96.154 416 11 5 281 692 583264400 583264814 0.000000e+00 675.0
32 TraesCS3A01G177600 chr6A 80.000 260 37 9 4 253 432533208 432532954 8.720000e-41 178.0
33 TraesCS3A01G177600 chrUn 94.676 432 16 6 281 709 31587141 31586714 0.000000e+00 664.0
34 TraesCS3A01G177600 chr5B 94.676 432 15 7 275 700 671337907 671338336 0.000000e+00 664.0
35 TraesCS3A01G177600 chr5B 79.775 267 35 10 8 256 588793308 588793043 3.130000e-40 176.0
36 TraesCS3A01G177600 chr2B 92.169 166 11 2 2250 2413 655014224 655014059 1.830000e-57 233.0
37 TraesCS3A01G177600 chr2B 83.766 154 25 0 2250 2403 55229279 55229432 2.460000e-31 147.0
38 TraesCS3A01G177600 chr2D 89.349 169 18 0 2245 2413 437665012 437665180 2.390000e-51 213.0
39 TraesCS3A01G177600 chr4B 84.337 166 26 0 2244 2409 227032041 227032206 2.440000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G177600 chr3A 201474148 201477206 3058 False 5650.0 5650 100.0000 1 3059 1 chr3A.!!$F1 3058
1 TraesCS3A01G177600 chr3D 167790244 167792092 1848 True 1520.0 2663 91.7455 1 2247 2 chr3D.!!$R2 2246
2 TraesCS3A01G177600 chr3B 242886374 242889824 3450 True 1001.7 2634 96.6150 4 2247 3 chr3B.!!$R1 2243
3 TraesCS3A01G177600 chr4A 211383844 211386117 2273 True 1110.0 1122 97.7550 2415 3059 2 chr4A.!!$R1 644
4 TraesCS3A01G177600 chr1B 200301628 200303909 2281 True 1104.0 1110 97.5970 2415 3059 2 chr1B.!!$R2 644
5 TraesCS3A01G177600 chr7B 116506658 116508936 2278 False 1080.0 1086 96.9765 2415 3059 2 chr7B.!!$F1 644
6 TraesCS3A01G177600 chr5D 424479376 424481689 2313 True 1030.0 1046 95.5200 2415 3059 2 chr5D.!!$R1 644
7 TraesCS3A01G177600 chr1D 247827446 247828091 645 False 1044.0 1044 95.9750 2419 3059 1 chr1D.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 2184 0.03759 TTGCCACGCCTTACAGGAAT 59.962 50.0 0.0 0.0 37.67 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 3987 0.029035 CGAATGCCAGAGCTGAATGC 59.971 55.0 0.0 0.0 40.8 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 248 0.546122 TTGCTGTTCACACCAGGAGT 59.454 50.000 0.00 0.00 31.65 3.85
231 256 3.334583 TCACACCAGGAGTATTTGAGC 57.665 47.619 0.00 0.00 0.00 4.26
277 1922 5.899547 TGACCTATTGGAGATTGCTCTAAGA 59.100 40.000 0.00 0.00 43.57 2.10
278 1923 6.384015 TGACCTATTGGAGATTGCTCTAAGAA 59.616 38.462 0.00 0.00 43.57 2.52
279 1924 7.092891 TGACCTATTGGAGATTGCTCTAAGAAA 60.093 37.037 0.00 0.00 43.57 2.52
280 1925 7.051000 ACCTATTGGAGATTGCTCTAAGAAAC 58.949 38.462 0.00 0.00 43.57 2.78
281 1926 6.201806 CCTATTGGAGATTGCTCTAAGAAACG 59.798 42.308 0.00 0.00 43.57 3.60
282 1927 3.861840 TGGAGATTGCTCTAAGAAACGG 58.138 45.455 0.00 0.00 41.06 4.44
283 1928 3.513912 TGGAGATTGCTCTAAGAAACGGA 59.486 43.478 0.00 0.00 41.06 4.69
284 1929 3.866327 GGAGATTGCTCTAAGAAACGGAC 59.134 47.826 0.00 0.00 41.06 4.79
285 1930 3.512680 AGATTGCTCTAAGAAACGGACG 58.487 45.455 0.00 0.00 0.00 4.79
286 1931 1.425412 TTGCTCTAAGAAACGGACGC 58.575 50.000 0.00 0.00 0.00 5.19
287 1932 0.731514 TGCTCTAAGAAACGGACGCG 60.732 55.000 3.53 3.53 0.00 6.01
288 1933 1.411493 GCTCTAAGAAACGGACGCGG 61.411 60.000 12.47 0.00 0.00 6.46
289 1934 1.411493 CTCTAAGAAACGGACGCGGC 61.411 60.000 12.47 7.53 0.00 6.53
290 1935 1.445582 CTAAGAAACGGACGCGGCT 60.446 57.895 13.91 0.00 0.00 5.52
291 1936 0.179156 CTAAGAAACGGACGCGGCTA 60.179 55.000 13.91 0.00 0.00 3.93
292 1937 0.243365 TAAGAAACGGACGCGGCTAA 59.757 50.000 13.91 0.00 0.00 3.09
293 1938 0.390735 AAGAAACGGACGCGGCTAAT 60.391 50.000 13.91 0.00 0.00 1.73
294 1939 0.804933 AGAAACGGACGCGGCTAATC 60.805 55.000 13.91 5.63 0.00 1.75
295 1940 0.804933 GAAACGGACGCGGCTAATCT 60.805 55.000 13.91 0.00 0.00 2.40
296 1941 0.457035 AAACGGACGCGGCTAATCTA 59.543 50.000 13.91 0.00 0.00 1.98
297 1942 0.248784 AACGGACGCGGCTAATCTAC 60.249 55.000 13.91 0.00 0.00 2.59
298 1943 1.357690 CGGACGCGGCTAATCTACA 59.642 57.895 13.91 0.00 0.00 2.74
299 1944 0.933509 CGGACGCGGCTAATCTACAC 60.934 60.000 13.91 0.00 0.00 2.90
300 1945 0.596859 GGACGCGGCTAATCTACACC 60.597 60.000 13.91 0.00 0.00 4.16
301 1946 0.596859 GACGCGGCTAATCTACACCC 60.597 60.000 12.47 0.00 0.00 4.61
302 1947 1.660575 CGCGGCTAATCTACACCCG 60.661 63.158 0.00 0.00 41.72 5.28
303 1948 1.737816 GCGGCTAATCTACACCCGA 59.262 57.895 1.09 0.00 41.34 5.14
304 1949 0.318784 GCGGCTAATCTACACCCGAG 60.319 60.000 1.09 0.00 41.34 4.63
305 1950 0.318784 CGGCTAATCTACACCCGAGC 60.319 60.000 0.00 0.00 41.34 5.03
306 1951 1.041437 GGCTAATCTACACCCGAGCT 58.959 55.000 0.00 0.00 0.00 4.09
307 1952 1.000052 GGCTAATCTACACCCGAGCTC 60.000 57.143 2.73 2.73 0.00 4.09
308 1953 1.681793 GCTAATCTACACCCGAGCTCA 59.318 52.381 15.40 0.00 0.00 4.26
309 1954 2.297597 GCTAATCTACACCCGAGCTCAT 59.702 50.000 15.40 0.00 0.00 2.90
310 1955 3.506455 GCTAATCTACACCCGAGCTCATA 59.494 47.826 15.40 0.00 0.00 2.15
311 1956 4.158764 GCTAATCTACACCCGAGCTCATAT 59.841 45.833 15.40 0.00 0.00 1.78
312 1957 4.527509 AATCTACACCCGAGCTCATATG 57.472 45.455 15.40 10.33 0.00 1.78
313 1958 1.613925 TCTACACCCGAGCTCATATGC 59.386 52.381 15.40 0.00 0.00 3.14
328 1973 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
329 1974 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
330 1975 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
331 1976 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
332 1977 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
333 1978 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
334 1979 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
335 1980 3.680490 TCCCGCATGAACAGTAAAATCA 58.320 40.909 0.00 0.00 0.00 2.57
336 1981 4.075682 TCCCGCATGAACAGTAAAATCAA 58.924 39.130 0.00 0.00 0.00 2.57
337 1982 4.520874 TCCCGCATGAACAGTAAAATCAAA 59.479 37.500 0.00 0.00 0.00 2.69
338 1983 5.010112 TCCCGCATGAACAGTAAAATCAAAA 59.990 36.000 0.00 0.00 0.00 2.44
339 1984 5.694006 CCCGCATGAACAGTAAAATCAAAAA 59.306 36.000 0.00 0.00 0.00 1.94
397 2042 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
398 2043 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
399 2044 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
400 2045 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
401 2046 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
402 2047 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
403 2048 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
404 2049 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
405 2050 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
406 2051 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
407 2052 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
408 2053 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
409 2054 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
410 2055 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
411 2056 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
412 2057 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
413 2058 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
414 2059 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
415 2060 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
416 2061 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
417 2062 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
418 2063 4.159377 TCTAAGTGCCTGCAAAAATTCG 57.841 40.909 0.00 0.00 0.00 3.34
419 2064 2.888834 AAGTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
420 2065 2.422276 AGTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
421 2066 1.680735 AGTGCCTGCAAAAATTCGTCA 59.319 42.857 0.00 0.00 0.00 4.35
422 2067 2.297033 AGTGCCTGCAAAAATTCGTCAT 59.703 40.909 0.00 0.00 0.00 3.06
423 2068 2.409378 GTGCCTGCAAAAATTCGTCATG 59.591 45.455 0.00 0.00 0.00 3.07
424 2069 2.295629 TGCCTGCAAAAATTCGTCATGA 59.704 40.909 0.00 0.00 0.00 3.07
425 2070 3.243670 TGCCTGCAAAAATTCGTCATGAA 60.244 39.130 0.00 0.00 41.81 2.57
426 2071 3.740321 GCCTGCAAAAATTCGTCATGAAA 59.260 39.130 0.00 0.00 40.71 2.69
427 2072 4.389687 GCCTGCAAAAATTCGTCATGAAAT 59.610 37.500 0.00 0.00 40.71 2.17
428 2073 5.445010 GCCTGCAAAAATTCGTCATGAAATC 60.445 40.000 0.00 0.00 40.71 2.17
429 2074 5.634439 CCTGCAAAAATTCGTCATGAAATCA 59.366 36.000 0.00 0.00 40.71 2.57
430 2075 6.400303 CCTGCAAAAATTCGTCATGAAATCAC 60.400 38.462 0.00 0.00 40.71 3.06
431 2076 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
432 2077 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
433 2078 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
434 2079 7.685304 GCAAAAATTCGTCATGAAATCACATTC 59.315 33.333 0.00 0.00 40.71 2.67
435 2080 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
436 2081 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
437 2082 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
438 2083 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
439 2084 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
440 2085 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
441 2086 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
442 2087 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
443 2088 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
444 2089 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
445 2090 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
446 2091 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
447 2092 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
448 2093 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
449 2094 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
450 2095 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
451 2096 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
452 2097 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
453 2098 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
487 2132 9.998106 AATAGTACTCTGAAAAAGCTACTTTCA 57.002 29.630 18.13 18.13 39.79 2.69
488 2133 9.998106 ATAGTACTCTGAAAAAGCTACTTTCAA 57.002 29.630 19.14 12.10 41.10 2.69
489 2134 8.732746 AGTACTCTGAAAAAGCTACTTTCAAA 57.267 30.769 19.14 9.92 41.10 2.69
490 2135 9.343539 AGTACTCTGAAAAAGCTACTTTCAAAT 57.656 29.630 19.14 12.46 41.10 2.32
491 2136 9.387123 GTACTCTGAAAAAGCTACTTTCAAATG 57.613 33.333 19.14 15.01 41.10 2.32
492 2137 6.920210 ACTCTGAAAAAGCTACTTTCAAATGC 59.080 34.615 19.14 0.00 41.10 3.56
493 2138 6.804677 TCTGAAAAAGCTACTTTCAAATGCA 58.195 32.000 19.14 0.00 41.10 3.96
494 2139 7.436118 TCTGAAAAAGCTACTTTCAAATGCAT 58.564 30.769 19.14 0.00 41.10 3.96
495 2140 7.927629 TCTGAAAAAGCTACTTTCAAATGCATT 59.072 29.630 19.14 5.99 41.10 3.56
496 2141 8.436046 TGAAAAAGCTACTTTCAAATGCATTT 57.564 26.923 18.99 18.99 39.28 2.32
497 2142 8.891720 TGAAAAAGCTACTTTCAAATGCATTTT 58.108 25.926 21.95 10.00 39.28 1.82
498 2143 9.161684 GAAAAAGCTACTTTCAAATGCATTTTG 57.838 29.630 21.95 16.42 45.08 2.44
508 2153 5.660629 CAAATGCATTTTGAAGCACTGAA 57.339 34.783 21.95 0.00 46.36 3.02
509 2154 6.236017 CAAATGCATTTTGAAGCACTGAAT 57.764 33.333 21.95 0.00 46.36 2.57
510 2155 6.664515 CAAATGCATTTTGAAGCACTGAATT 58.335 32.000 21.95 0.00 46.36 2.17
511 2156 6.870971 AATGCATTTTGAAGCACTGAATTT 57.129 29.167 5.99 0.00 44.49 1.82
512 2157 5.660629 TGCATTTTGAAGCACTGAATTTG 57.339 34.783 0.00 0.00 35.51 2.32
513 2158 5.117584 TGCATTTTGAAGCACTGAATTTGT 58.882 33.333 0.00 0.00 35.51 2.83
514 2159 5.585445 TGCATTTTGAAGCACTGAATTTGTT 59.415 32.000 0.00 0.00 35.51 2.83
515 2160 6.093771 TGCATTTTGAAGCACTGAATTTGTTT 59.906 30.769 0.00 0.00 35.51 2.83
516 2161 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
517 2162 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
536 2181 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
537 2182 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
538 2183 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
539 2184 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
540 2185 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
541 2186 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
542 2187 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
543 2188 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
544 2189 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
545 2190 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
546 2191 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
547 2192 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
548 2193 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
549 2194 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
550 2195 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
551 2196 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
552 2197 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
553 2198 7.423199 CCTTACAGGAATGTGATTTCATGATG 58.577 38.462 0.00 0.00 39.18 3.07
554 2199 7.283807 CCTTACAGGAATGTGATTTCATGATGA 59.716 37.037 0.00 0.00 39.18 2.92
555 2200 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
556 2201 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
557 2202 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
558 2203 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
559 2204 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
560 2205 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
561 2206 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
562 2207 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
563 2208 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
564 2209 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
565 2210 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
566 2211 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
567 2212 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
568 2213 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
569 2214 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
570 2215 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
571 2216 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
572 2217 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
573 2218 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
574 2219 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
575 2220 5.288804 TGAATTTTTGCAGGCACTTAGAAC 58.711 37.500 0.00 0.00 34.60 3.01
576 2221 5.068987 TGAATTTTTGCAGGCACTTAGAACT 59.931 36.000 0.00 0.00 34.60 3.01
577 2222 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
578 2223 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
579 2224 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
580 2225 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
581 2226 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
582 2227 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
583 2228 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
584 2229 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
585 2230 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
586 2231 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
587 2232 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
588 2233 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
589 2234 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
590 2235 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
591 2236 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
592 2237 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
593 2238 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
594 2239 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
595 2240 6.719365 AGAACTTTTGTCAATGTTTCTCTCG 58.281 36.000 6.10 0.00 31.96 4.04
596 2241 6.538742 AGAACTTTTGTCAATGTTTCTCTCGA 59.461 34.615 6.10 0.00 31.96 4.04
597 2242 6.677781 ACTTTTGTCAATGTTTCTCTCGAA 57.322 33.333 0.00 0.00 0.00 3.71
598 2243 7.083875 ACTTTTGTCAATGTTTCTCTCGAAA 57.916 32.000 0.00 0.00 36.82 3.46
599 2244 7.535139 ACTTTTGTCAATGTTTCTCTCGAAAA 58.465 30.769 0.00 0.00 40.57 2.29
600 2245 8.026607 ACTTTTGTCAATGTTTCTCTCGAAAAA 58.973 29.630 0.00 0.00 40.57 1.94
653 2298 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
654 2299 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
655 2300 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
656 2301 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
657 2302 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
674 2319 1.070445 AGCATATGAGCTCGGGTGC 59.930 57.895 22.13 22.13 42.18 5.01
675 2320 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
676 2321 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
677 2322 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
678 2323 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
679 2324 1.123077 TATGAGCTCGGGTGCAGAAT 58.877 50.000 9.64 0.00 34.99 2.40
680 2325 0.463295 ATGAGCTCGGGTGCAGAATG 60.463 55.000 9.64 0.00 40.87 2.67
681 2326 1.219124 GAGCTCGGGTGCAGAATGA 59.781 57.895 0.00 0.00 39.69 2.57
682 2327 0.391661 GAGCTCGGGTGCAGAATGAA 60.392 55.000 0.00 0.00 39.69 2.57
683 2328 0.674895 AGCTCGGGTGCAGAATGAAC 60.675 55.000 0.00 0.00 46.86 3.18
684 2329 0.674895 GCTCGGGTGCAGAATGAACT 60.675 55.000 0.00 0.00 46.71 3.01
685 2330 1.813513 CTCGGGTGCAGAATGAACTT 58.186 50.000 0.00 0.00 46.71 2.66
686 2331 2.154462 CTCGGGTGCAGAATGAACTTT 58.846 47.619 0.00 0.00 46.71 2.66
687 2332 2.554032 CTCGGGTGCAGAATGAACTTTT 59.446 45.455 0.00 0.00 46.71 2.27
688 2333 2.552315 TCGGGTGCAGAATGAACTTTTC 59.448 45.455 0.00 0.00 46.71 2.29
689 2334 2.665519 CGGGTGCAGAATGAACTTTTCG 60.666 50.000 0.00 0.00 46.71 3.46
690 2335 2.319472 GGTGCAGAATGAACTTTTCGC 58.681 47.619 0.00 0.00 46.71 4.70
691 2336 2.030805 GGTGCAGAATGAACTTTTCGCT 60.031 45.455 0.00 0.00 46.71 4.93
692 2337 3.188460 GGTGCAGAATGAACTTTTCGCTA 59.812 43.478 0.00 0.00 46.71 4.26
693 2338 4.320202 GGTGCAGAATGAACTTTTCGCTAA 60.320 41.667 0.00 0.00 46.71 3.09
694 2339 4.848299 GTGCAGAATGAACTTTTCGCTAAG 59.152 41.667 0.00 0.00 43.11 2.18
710 2355 6.570672 TCGCTAAGAAACACTCTTTCTCTA 57.429 37.500 0.00 0.00 41.97 2.43
855 2501 3.058983 CACTTAATTTGCTCTCGTGTGCA 60.059 43.478 9.90 9.90 40.37 4.57
960 2606 1.078201 TGAGCGCGCATTGTACAGAG 61.078 55.000 35.10 0.00 0.00 3.35
1581 3227 1.341531 CGAGATAGCCGAAACATCCCT 59.658 52.381 0.00 0.00 0.00 4.20
1623 3269 4.803426 CGGAGGGCGTCAGTCTGC 62.803 72.222 9.66 0.00 0.00 4.26
1659 3305 2.669569 GGGCACTGCAGAGCGAAA 60.670 61.111 26.43 0.00 32.29 3.46
1899 3545 0.174389 GCGTGAGGAAGCAGAGATCA 59.826 55.000 0.00 0.00 0.00 2.92
2076 3722 8.144478 CCTAGCTAAGCATATTTCAGTTCAGTA 58.856 37.037 0.00 0.00 0.00 2.74
2084 3730 7.011482 AGCATATTTCAGTTCAGTATTTCCGAC 59.989 37.037 0.00 0.00 0.00 4.79
2151 3798 8.259411 TGGTGAATTTTATCAATTCAATGAGGG 58.741 33.333 10.77 0.00 45.06 4.30
2156 3803 9.991906 AATTTTATCAATTCAATGAGGGCATAG 57.008 29.630 0.00 0.00 33.44 2.23
2162 3809 1.565759 TCAATGAGGGCATAGCTGGTT 59.434 47.619 0.00 0.00 33.44 3.67
2208 3855 8.982685 GTACATAGTCAAGATCAACACCATATG 58.017 37.037 0.00 0.00 0.00 1.78
2216 3863 5.443283 AGATCAACACCATATGCACTCAAT 58.557 37.500 0.00 0.00 0.00 2.57
2231 3878 4.530875 CACTCAATCATCTTTTAGCCCCT 58.469 43.478 0.00 0.00 0.00 4.79
2232 3879 4.578105 CACTCAATCATCTTTTAGCCCCTC 59.422 45.833 0.00 0.00 0.00 4.30
2235 3882 2.717639 TCATCTTTTAGCCCCTCTGC 57.282 50.000 0.00 0.00 0.00 4.26
2247 3894 0.744771 CCCTCTGCGAAAACCCTAGC 60.745 60.000 0.00 0.00 0.00 3.42
2248 3895 0.036388 CCTCTGCGAAAACCCTAGCA 60.036 55.000 0.00 0.00 38.03 3.49
2249 3896 1.079503 CTCTGCGAAAACCCTAGCAC 58.920 55.000 0.00 0.00 35.59 4.40
2250 3897 0.685097 TCTGCGAAAACCCTAGCACT 59.315 50.000 0.00 0.00 35.59 4.40
2251 3898 0.798776 CTGCGAAAACCCTAGCACTG 59.201 55.000 0.00 0.00 35.59 3.66
2252 3899 0.107831 TGCGAAAACCCTAGCACTGT 59.892 50.000 0.00 0.00 34.39 3.55
2253 3900 0.517316 GCGAAAACCCTAGCACTGTG 59.483 55.000 2.76 2.76 0.00 3.66
2254 3901 1.878953 CGAAAACCCTAGCACTGTGT 58.121 50.000 9.86 0.00 0.00 3.72
2255 3902 2.218603 CGAAAACCCTAGCACTGTGTT 58.781 47.619 9.86 5.98 0.00 3.32
2256 3903 2.616842 CGAAAACCCTAGCACTGTGTTT 59.383 45.455 9.86 0.00 0.00 2.83
2257 3904 3.548014 CGAAAACCCTAGCACTGTGTTTG 60.548 47.826 9.86 4.39 0.00 2.93
2258 3905 1.981256 AACCCTAGCACTGTGTTTGG 58.019 50.000 15.89 15.89 0.00 3.28
2259 3906 1.136828 ACCCTAGCACTGTGTTTGGA 58.863 50.000 22.35 0.00 0.00 3.53
2260 3907 1.705186 ACCCTAGCACTGTGTTTGGAT 59.295 47.619 22.35 6.44 0.00 3.41
2261 3908 2.086869 CCCTAGCACTGTGTTTGGATG 58.913 52.381 22.35 6.80 0.00 3.51
2262 3909 2.553028 CCCTAGCACTGTGTTTGGATGT 60.553 50.000 22.35 0.00 0.00 3.06
2263 3910 3.149196 CCTAGCACTGTGTTTGGATGTT 58.851 45.455 17.45 0.00 0.00 2.71
2264 3911 3.569701 CCTAGCACTGTGTTTGGATGTTT 59.430 43.478 17.45 0.00 0.00 2.83
2265 3912 3.441496 AGCACTGTGTTTGGATGTTTG 57.559 42.857 9.86 0.00 0.00 2.93
2266 3913 1.860326 GCACTGTGTTTGGATGTTTGC 59.140 47.619 9.86 0.00 0.00 3.68
2267 3914 2.738000 GCACTGTGTTTGGATGTTTGCA 60.738 45.455 9.86 0.00 0.00 4.08
2268 3915 3.719924 CACTGTGTTTGGATGTTTGCAT 58.280 40.909 0.00 0.00 38.18 3.96
2269 3916 4.121317 CACTGTGTTTGGATGTTTGCATT 58.879 39.130 0.00 0.00 35.07 3.56
2270 3917 4.209703 CACTGTGTTTGGATGTTTGCATTC 59.790 41.667 0.00 0.00 35.07 2.67
2271 3918 3.379240 TGTGTTTGGATGTTTGCATTCG 58.621 40.909 0.00 0.00 33.23 3.34
2272 3919 2.730928 GTGTTTGGATGTTTGCATTCGG 59.269 45.455 0.00 0.00 33.23 4.30
2273 3920 2.288702 TGTTTGGATGTTTGCATTCGGG 60.289 45.455 0.00 0.00 33.23 5.14
2274 3921 0.246086 TTGGATGTTTGCATTCGGGC 59.754 50.000 0.00 0.00 33.23 6.13
2275 3922 1.141665 GGATGTTTGCATTCGGGCC 59.858 57.895 0.00 0.00 35.07 5.80
2276 3923 1.322538 GGATGTTTGCATTCGGGCCT 61.323 55.000 0.84 0.00 35.07 5.19
2277 3924 1.388547 GATGTTTGCATTCGGGCCTA 58.611 50.000 0.84 0.00 35.07 3.93
2278 3925 1.334869 GATGTTTGCATTCGGGCCTAG 59.665 52.381 0.84 0.00 35.07 3.02
2279 3926 0.037590 TGTTTGCATTCGGGCCTAGT 59.962 50.000 0.84 0.00 0.00 2.57
2280 3927 1.279558 TGTTTGCATTCGGGCCTAGTA 59.720 47.619 0.84 0.00 0.00 1.82
2281 3928 2.092646 TGTTTGCATTCGGGCCTAGTAT 60.093 45.455 0.84 0.00 0.00 2.12
2282 3929 2.949644 GTTTGCATTCGGGCCTAGTATT 59.050 45.455 0.84 0.00 0.00 1.89
2283 3930 2.254546 TGCATTCGGGCCTAGTATTG 57.745 50.000 0.84 0.00 0.00 1.90
2284 3931 1.765904 TGCATTCGGGCCTAGTATTGA 59.234 47.619 0.84 0.00 0.00 2.57
2285 3932 2.224281 TGCATTCGGGCCTAGTATTGAG 60.224 50.000 0.84 0.00 0.00 3.02
2286 3933 2.224305 GCATTCGGGCCTAGTATTGAGT 60.224 50.000 0.84 0.00 0.00 3.41
2287 3934 3.006537 GCATTCGGGCCTAGTATTGAGTA 59.993 47.826 0.84 0.00 0.00 2.59
2288 3935 4.322801 GCATTCGGGCCTAGTATTGAGTAT 60.323 45.833 0.84 0.00 0.00 2.12
2289 3936 5.794894 CATTCGGGCCTAGTATTGAGTATT 58.205 41.667 0.84 0.00 0.00 1.89
2290 3937 4.866508 TCGGGCCTAGTATTGAGTATTG 57.133 45.455 0.84 0.00 0.00 1.90
2291 3938 3.576982 TCGGGCCTAGTATTGAGTATTGG 59.423 47.826 0.84 0.00 0.00 3.16
2292 3939 3.676093 GGGCCTAGTATTGAGTATTGGC 58.324 50.000 0.84 0.00 38.49 4.52
2293 3940 3.328050 GGGCCTAGTATTGAGTATTGGCT 59.672 47.826 0.84 0.00 39.12 4.75
2294 3941 4.202472 GGGCCTAGTATTGAGTATTGGCTT 60.202 45.833 0.84 0.00 39.12 4.35
2295 3942 5.377478 GGCCTAGTATTGAGTATTGGCTTT 58.623 41.667 0.00 0.00 39.12 3.51
2296 3943 5.470437 GGCCTAGTATTGAGTATTGGCTTTC 59.530 44.000 0.00 0.00 39.12 2.62
2297 3944 5.177696 GCCTAGTATTGAGTATTGGCTTTCG 59.822 44.000 0.00 0.00 36.52 3.46
2298 3945 6.281405 CCTAGTATTGAGTATTGGCTTTCGT 58.719 40.000 0.00 0.00 0.00 3.85
2299 3946 6.761714 CCTAGTATTGAGTATTGGCTTTCGTT 59.238 38.462 0.00 0.00 0.00 3.85
2300 3947 7.280205 CCTAGTATTGAGTATTGGCTTTCGTTT 59.720 37.037 0.00 0.00 0.00 3.60
2301 3948 6.842163 AGTATTGAGTATTGGCTTTCGTTTG 58.158 36.000 0.00 0.00 0.00 2.93
2302 3949 4.497473 TTGAGTATTGGCTTTCGTTTGG 57.503 40.909 0.00 0.00 0.00 3.28
2303 3950 2.817258 TGAGTATTGGCTTTCGTTTGGG 59.183 45.455 0.00 0.00 0.00 4.12
2304 3951 2.817844 GAGTATTGGCTTTCGTTTGGGT 59.182 45.455 0.00 0.00 0.00 4.51
2305 3952 3.227614 AGTATTGGCTTTCGTTTGGGTT 58.772 40.909 0.00 0.00 0.00 4.11
2306 3953 2.524569 ATTGGCTTTCGTTTGGGTTG 57.475 45.000 0.00 0.00 0.00 3.77
2307 3954 1.475403 TTGGCTTTCGTTTGGGTTGA 58.525 45.000 0.00 0.00 0.00 3.18
2308 3955 1.475403 TGGCTTTCGTTTGGGTTGAA 58.525 45.000 0.00 0.00 0.00 2.69
2309 3956 2.035632 TGGCTTTCGTTTGGGTTGAAT 58.964 42.857 0.00 0.00 0.00 2.57
2310 3957 3.223435 TGGCTTTCGTTTGGGTTGAATA 58.777 40.909 0.00 0.00 0.00 1.75
2311 3958 3.829601 TGGCTTTCGTTTGGGTTGAATAT 59.170 39.130 0.00 0.00 0.00 1.28
2312 3959 4.082463 TGGCTTTCGTTTGGGTTGAATATC 60.082 41.667 0.00 0.00 0.00 1.63
2313 3960 4.421058 GCTTTCGTTTGGGTTGAATATCC 58.579 43.478 0.00 0.00 0.00 2.59
2314 3961 4.676986 GCTTTCGTTTGGGTTGAATATCCC 60.677 45.833 0.00 0.00 43.67 3.85
2315 3962 2.634600 TCGTTTGGGTTGAATATCCCG 58.365 47.619 0.00 0.00 46.13 5.14
2316 3963 2.236644 TCGTTTGGGTTGAATATCCCGA 59.763 45.455 0.00 0.00 46.13 5.14
2317 3964 3.011119 CGTTTGGGTTGAATATCCCGAA 58.989 45.455 0.00 0.00 46.13 4.30
2318 3965 3.630312 CGTTTGGGTTGAATATCCCGAAT 59.370 43.478 6.24 0.00 45.58 3.34
2319 3966 4.817464 CGTTTGGGTTGAATATCCCGAATA 59.183 41.667 6.24 0.00 45.58 1.75
2320 3967 5.277634 CGTTTGGGTTGAATATCCCGAATAC 60.278 44.000 6.24 0.00 45.58 1.89
2321 3968 4.360951 TGGGTTGAATATCCCGAATACC 57.639 45.455 0.00 0.00 46.13 2.73
2322 3969 3.244284 TGGGTTGAATATCCCGAATACCG 60.244 47.826 0.00 0.00 46.13 4.02
2323 3970 2.740447 GGTTGAATATCCCGAATACCGC 59.260 50.000 0.00 0.00 36.84 5.68
2324 3971 2.740447 GTTGAATATCCCGAATACCGCC 59.260 50.000 0.00 0.00 36.84 6.13
2325 3972 1.067425 TGAATATCCCGAATACCGCCG 60.067 52.381 0.00 0.00 36.84 6.46
2326 3973 0.971386 AATATCCCGAATACCGCCGT 59.029 50.000 0.00 0.00 36.84 5.68
2327 3974 0.971386 ATATCCCGAATACCGCCGTT 59.029 50.000 0.00 0.00 36.84 4.44
2328 3975 0.752054 TATCCCGAATACCGCCGTTT 59.248 50.000 0.00 0.00 36.84 3.60
2329 3976 0.812412 ATCCCGAATACCGCCGTTTG 60.812 55.000 0.00 0.00 36.84 2.93
2330 3977 2.401990 CCGAATACCGCCGTTTGC 59.598 61.111 0.00 0.00 36.84 3.68
2331 3978 2.104253 CCGAATACCGCCGTTTGCT 61.104 57.895 0.00 0.00 38.05 3.91
2332 3979 1.641123 CCGAATACCGCCGTTTGCTT 61.641 55.000 0.00 0.00 38.05 3.91
2333 3980 1.000884 CGAATACCGCCGTTTGCTTA 58.999 50.000 0.00 0.00 38.05 3.09
2334 3981 1.394227 CGAATACCGCCGTTTGCTTAA 59.606 47.619 0.00 0.00 38.05 1.85
2335 3982 2.031191 CGAATACCGCCGTTTGCTTAAT 59.969 45.455 0.00 0.00 38.05 1.40
2336 3983 3.614588 GAATACCGCCGTTTGCTTAATC 58.385 45.455 0.00 0.00 38.05 1.75
2337 3984 2.389962 TACCGCCGTTTGCTTAATCT 57.610 45.000 0.00 0.00 38.05 2.40
2338 3985 1.530323 ACCGCCGTTTGCTTAATCTT 58.470 45.000 0.00 0.00 38.05 2.40
2339 3986 1.199097 ACCGCCGTTTGCTTAATCTTG 59.801 47.619 0.00 0.00 38.05 3.02
2340 3987 1.467374 CCGCCGTTTGCTTAATCTTGG 60.467 52.381 0.00 0.00 38.05 3.61
2341 3988 1.629013 GCCGTTTGCTTAATCTTGGC 58.371 50.000 0.00 0.00 36.87 4.52
2342 3989 1.067915 GCCGTTTGCTTAATCTTGGCA 60.068 47.619 0.00 0.00 40.88 4.92
2343 3990 2.417243 GCCGTTTGCTTAATCTTGGCAT 60.417 45.455 0.00 0.00 40.88 4.40
2344 3991 3.848726 CCGTTTGCTTAATCTTGGCATT 58.151 40.909 0.00 0.00 35.84 3.56
2345 3992 3.859386 CCGTTTGCTTAATCTTGGCATTC 59.141 43.478 0.00 0.00 35.84 2.67
2346 3993 4.484236 CGTTTGCTTAATCTTGGCATTCA 58.516 39.130 0.00 0.00 35.84 2.57
2347 3994 4.560035 CGTTTGCTTAATCTTGGCATTCAG 59.440 41.667 0.00 0.00 35.84 3.02
2348 3995 3.788333 TGCTTAATCTTGGCATTCAGC 57.212 42.857 0.00 0.00 44.65 4.26
2349 3996 3.359033 TGCTTAATCTTGGCATTCAGCT 58.641 40.909 6.94 0.00 44.79 4.24
2350 3997 3.379372 TGCTTAATCTTGGCATTCAGCTC 59.621 43.478 6.94 0.00 44.79 4.09
2351 3998 3.631227 GCTTAATCTTGGCATTCAGCTCT 59.369 43.478 0.00 0.00 44.79 4.09
2352 3999 4.497674 GCTTAATCTTGGCATTCAGCTCTG 60.498 45.833 0.00 0.00 44.79 3.35
2353 4000 2.054232 ATCTTGGCATTCAGCTCTGG 57.946 50.000 0.00 0.00 44.79 3.86
2354 4001 0.679002 TCTTGGCATTCAGCTCTGGC 60.679 55.000 6.98 6.98 44.79 4.85
2355 4002 0.963856 CTTGGCATTCAGCTCTGGCA 60.964 55.000 11.36 11.36 45.01 4.92
2356 4003 0.323999 TTGGCATTCAGCTCTGGCAT 60.324 50.000 14.90 0.00 45.81 4.40
2357 4004 0.323999 TGGCATTCAGCTCTGGCATT 60.324 50.000 11.36 0.00 42.27 3.56
2358 4005 0.384669 GGCATTCAGCTCTGGCATTC 59.615 55.000 8.61 0.00 44.79 2.67
2359 4006 0.029035 GCATTCAGCTCTGGCATTCG 59.971 55.000 0.00 0.00 41.70 3.34
2360 4007 0.661552 CATTCAGCTCTGGCATTCGG 59.338 55.000 0.00 0.00 41.70 4.30
2361 4008 0.465097 ATTCAGCTCTGGCATTCGGG 60.465 55.000 0.00 0.00 41.70 5.14
2362 4009 3.207669 CAGCTCTGGCATTCGGGC 61.208 66.667 0.00 0.00 41.70 6.13
2363 4010 3.406200 AGCTCTGGCATTCGGGCT 61.406 61.111 0.00 0.00 43.83 5.19
2364 4011 2.899339 GCTCTGGCATTCGGGCTC 60.899 66.667 0.00 0.00 43.83 4.70
2365 4012 2.587194 CTCTGGCATTCGGGCTCG 60.587 66.667 0.00 0.00 43.83 5.03
2366 4013 3.074369 TCTGGCATTCGGGCTCGA 61.074 61.111 3.45 3.45 44.44 4.04
2367 4014 2.109799 CTGGCATTCGGGCTCGAT 59.890 61.111 10.79 0.00 45.51 3.59
2368 4015 1.112916 TCTGGCATTCGGGCTCGATA 61.113 55.000 10.79 0.51 45.51 2.92
2369 4016 0.036952 CTGGCATTCGGGCTCGATAT 60.037 55.000 10.79 3.38 45.51 1.63
2370 4017 0.037326 TGGCATTCGGGCTCGATATC 60.037 55.000 10.79 0.79 45.51 1.63
2371 4018 1.078759 GGCATTCGGGCTCGATATCG 61.079 60.000 19.14 19.14 45.51 2.92
2372 4019 0.109272 GCATTCGGGCTCGATATCGA 60.109 55.000 25.32 25.32 45.51 3.59
2381 4028 3.002277 TCGATATCGAGCGACCAGT 57.998 52.632 23.48 0.00 44.22 4.00
2382 4029 0.866427 TCGATATCGAGCGACCAGTC 59.134 55.000 23.48 0.00 44.22 3.51
2383 4030 0.110147 CGATATCGAGCGACCAGTCC 60.110 60.000 20.50 0.00 43.02 3.85
2384 4031 0.241481 GATATCGAGCGACCAGTCCC 59.759 60.000 0.00 0.00 0.00 4.46
2385 4032 1.516365 ATATCGAGCGACCAGTCCCG 61.516 60.000 0.00 0.00 0.00 5.14
2391 4038 4.680237 CGACCAGTCCCGCAAGCA 62.680 66.667 0.00 0.00 0.00 3.91
2392 4039 2.281484 GACCAGTCCCGCAAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
2393 4040 1.896660 GACCAGTCCCGCAAGCAAA 60.897 57.895 0.00 0.00 0.00 3.68
2394 4041 1.452145 GACCAGTCCCGCAAGCAAAA 61.452 55.000 0.00 0.00 0.00 2.44
2395 4042 1.040339 ACCAGTCCCGCAAGCAAAAA 61.040 50.000 0.00 0.00 0.00 1.94
2396 4043 0.318955 CCAGTCCCGCAAGCAAAAAG 60.319 55.000 0.00 0.00 0.00 2.27
2397 4044 0.940991 CAGTCCCGCAAGCAAAAAGC 60.941 55.000 0.00 0.00 46.19 3.51
2406 4053 2.181777 GCAAAAAGCTAGCGGCCC 59.818 61.111 9.55 0.00 43.05 5.80
2407 4054 2.635443 GCAAAAAGCTAGCGGCCCA 61.635 57.895 9.55 0.00 43.05 5.36
2408 4055 1.963679 CAAAAAGCTAGCGGCCCAA 59.036 52.632 9.55 0.00 43.05 4.12
2409 4056 0.388520 CAAAAAGCTAGCGGCCCAAC 60.389 55.000 9.55 0.00 43.05 3.77
2410 4057 0.539669 AAAAAGCTAGCGGCCCAACT 60.540 50.000 9.55 0.00 43.05 3.16
2411 4058 0.960861 AAAAGCTAGCGGCCCAACTC 60.961 55.000 9.55 0.00 43.05 3.01
2412 4059 3.665675 AAGCTAGCGGCCCAACTCG 62.666 63.158 9.55 0.00 43.05 4.18
2413 4060 4.452733 GCTAGCGGCCCAACTCGT 62.453 66.667 0.00 0.00 34.27 4.18
2414 4061 3.072486 GCTAGCGGCCCAACTCGTA 62.072 63.158 0.00 0.00 34.27 3.43
2415 4062 1.065928 CTAGCGGCCCAACTCGTAG 59.934 63.158 0.00 0.00 0.00 3.51
2416 4063 2.351336 CTAGCGGCCCAACTCGTAGG 62.351 65.000 0.00 0.00 0.00 3.18
2442 4089 0.304705 CGGCCACGATTAATGTGAGC 59.695 55.000 2.24 15.20 44.60 4.26
2561 4208 1.474077 GAAGGTTGCATGCCTAGTTGG 59.526 52.381 16.68 0.00 34.81 3.77
2618 4265 2.813754 CGGATCAAGCAAAGAAAGGTCA 59.186 45.455 0.00 0.00 0.00 4.02
2735 4385 4.003648 GCTTCTTTTTCTGAGATCCCGAA 58.996 43.478 0.00 0.00 0.00 4.30
2867 4517 0.599558 TACTTCTGTTGGGGTCGACG 59.400 55.000 9.92 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.935873 CCGACGTGATTTCATGATGCT 59.064 47.619 6.78 0.00 36.72 3.79
2 3 1.665679 ACCGACGTGATTTCATGATGC 59.334 47.619 6.78 0.00 36.72 3.91
216 241 2.768527 TCCTGAGCTCAAATACTCCTGG 59.231 50.000 18.85 11.92 31.65 4.45
223 248 7.200434 ACCTTTCTAATCCTGAGCTCAAATA 57.800 36.000 18.85 6.32 0.00 1.40
231 256 7.334671 GGTCAAAAGTACCTTTCTAATCCTGAG 59.665 40.741 0.00 0.00 31.99 3.35
277 1922 0.457035 TAGATTAGCCGCGTCCGTTT 59.543 50.000 4.92 0.00 0.00 3.60
278 1923 0.248784 GTAGATTAGCCGCGTCCGTT 60.249 55.000 4.92 0.00 0.00 4.44
279 1924 1.358046 GTAGATTAGCCGCGTCCGT 59.642 57.895 4.92 0.00 0.00 4.69
280 1925 0.933509 GTGTAGATTAGCCGCGTCCG 60.934 60.000 4.92 0.00 0.00 4.79
281 1926 0.596859 GGTGTAGATTAGCCGCGTCC 60.597 60.000 4.92 0.00 0.00 4.79
282 1927 0.596859 GGGTGTAGATTAGCCGCGTC 60.597 60.000 4.92 0.00 0.00 5.19
283 1928 1.440476 GGGTGTAGATTAGCCGCGT 59.560 57.895 4.92 0.00 0.00 6.01
284 1929 4.338327 GGGTGTAGATTAGCCGCG 57.662 61.111 0.00 0.00 0.00 6.46
287 1932 1.000052 GAGCTCGGGTGTAGATTAGCC 60.000 57.143 0.00 0.00 0.00 3.93
288 1933 1.681793 TGAGCTCGGGTGTAGATTAGC 59.318 52.381 9.64 0.00 0.00 3.09
289 1934 5.645624 CATATGAGCTCGGGTGTAGATTAG 58.354 45.833 9.64 0.00 0.00 1.73
290 1935 4.082190 GCATATGAGCTCGGGTGTAGATTA 60.082 45.833 9.64 0.00 0.00 1.75
291 1936 3.306364 GCATATGAGCTCGGGTGTAGATT 60.306 47.826 9.64 0.00 0.00 2.40
292 1937 2.232452 GCATATGAGCTCGGGTGTAGAT 59.768 50.000 9.64 0.00 0.00 1.98
293 1938 1.613925 GCATATGAGCTCGGGTGTAGA 59.386 52.381 9.64 0.00 0.00 2.59
294 1939 1.615883 AGCATATGAGCTCGGGTGTAG 59.384 52.381 9.64 0.00 42.18 2.74
295 1940 1.704641 AGCATATGAGCTCGGGTGTA 58.295 50.000 9.64 0.00 42.18 2.90
296 1941 2.521103 AGCATATGAGCTCGGGTGT 58.479 52.632 9.64 0.00 42.18 4.16
313 1958 3.689161 TGATTTTACTGTTCATGCGGGAG 59.311 43.478 0.00 0.00 0.00 4.30
314 1959 3.680490 TGATTTTACTGTTCATGCGGGA 58.320 40.909 0.00 0.00 0.00 5.14
315 1960 4.433186 TTGATTTTACTGTTCATGCGGG 57.567 40.909 0.00 0.00 0.00 6.13
316 1961 6.761731 TTTTTGATTTTACTGTTCATGCGG 57.238 33.333 0.00 0.00 0.00 5.69
371 2016 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
372 2017 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
373 2018 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
374 2019 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
375 2020 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
376 2021 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
377 2022 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
378 2023 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
379 2024 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
380 2025 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
381 2026 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
382 2027 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
383 2028 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
384 2029 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
385 2030 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
386 2031 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
387 2032 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
388 2033 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
389 2034 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
390 2035 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
391 2036 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
392 2037 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
393 2038 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
394 2039 5.532557 GAATTTTTGCAGGCACTTAGAACT 58.467 37.500 0.00 0.00 34.60 3.01
395 2040 4.382754 CGAATTTTTGCAGGCACTTAGAAC 59.617 41.667 0.00 0.00 34.60 3.01
396 2041 4.037446 ACGAATTTTTGCAGGCACTTAGAA 59.963 37.500 0.00 0.00 34.60 2.10
397 2042 3.568007 ACGAATTTTTGCAGGCACTTAGA 59.432 39.130 0.00 0.00 34.60 2.10
398 2043 3.900941 ACGAATTTTTGCAGGCACTTAG 58.099 40.909 0.00 0.00 34.60 2.18
399 2044 3.316588 TGACGAATTTTTGCAGGCACTTA 59.683 39.130 0.00 0.00 34.60 2.24
400 2045 2.100584 TGACGAATTTTTGCAGGCACTT 59.899 40.909 0.00 0.00 34.60 3.16
401 2046 1.680735 TGACGAATTTTTGCAGGCACT 59.319 42.857 0.00 0.00 43.88 4.40
402 2047 2.132740 TGACGAATTTTTGCAGGCAC 57.867 45.000 0.00 0.00 0.00 5.01
403 2048 2.295629 TCATGACGAATTTTTGCAGGCA 59.704 40.909 0.00 0.00 0.00 4.75
404 2049 2.945278 TCATGACGAATTTTTGCAGGC 58.055 42.857 0.00 0.00 0.00 4.85
405 2050 5.634439 TGATTTCATGACGAATTTTTGCAGG 59.366 36.000 0.00 0.00 32.32 4.85
406 2051 6.144241 TGTGATTTCATGACGAATTTTTGCAG 59.856 34.615 0.00 0.00 32.32 4.41
407 2052 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
408 2053 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
409 2054 8.164153 GGAATGTGATTTCATGACGAATTTTTG 58.836 33.333 0.00 0.00 32.32 2.44
410 2055 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
411 2056 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
412 2057 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
413 2058 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
414 2059 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
415 2060 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
416 2061 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
417 2062 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
418 2063 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
419 2064 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
420 2065 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
421 2066 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
422 2067 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
423 2068 4.034510 CACGCCTTCTAGGAATGTGATTTC 59.965 45.833 0.00 0.00 37.67 2.17
424 2069 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
425 2070 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
426 2071 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
427 2072 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
428 2073 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
429 2074 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
430 2075 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
431 2076 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
432 2077 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
433 2078 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
434 2079 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
461 2106 9.998106 TGAAAGTAGCTTTTTCAGAGTACTATT 57.002 29.630 17.30 0.00 39.05 1.73
462 2107 9.998106 TTGAAAGTAGCTTTTTCAGAGTACTAT 57.002 29.630 19.21 0.00 43.22 2.12
463 2108 9.826574 TTTGAAAGTAGCTTTTTCAGAGTACTA 57.173 29.630 19.21 6.79 43.22 1.82
464 2109 8.732746 TTTGAAAGTAGCTTTTTCAGAGTACT 57.267 30.769 19.21 0.00 43.22 2.73
465 2110 9.387123 CATTTGAAAGTAGCTTTTTCAGAGTAC 57.613 33.333 19.21 0.00 43.22 2.73
466 2111 8.076178 GCATTTGAAAGTAGCTTTTTCAGAGTA 58.924 33.333 19.21 8.08 43.22 2.59
467 2112 6.920210 GCATTTGAAAGTAGCTTTTTCAGAGT 59.080 34.615 19.21 11.01 43.22 3.24
468 2113 6.919662 TGCATTTGAAAGTAGCTTTTTCAGAG 59.080 34.615 19.21 15.41 43.22 3.35
469 2114 6.804677 TGCATTTGAAAGTAGCTTTTTCAGA 58.195 32.000 19.21 16.95 43.22 3.27
470 2115 7.647907 ATGCATTTGAAAGTAGCTTTTTCAG 57.352 32.000 19.21 12.77 43.22 3.02
471 2116 8.436046 AAATGCATTTGAAAGTAGCTTTTTCA 57.564 26.923 23.54 17.30 41.40 2.69
487 2132 6.870971 AATTCAGTGCTTCAAAATGCATTT 57.129 29.167 18.99 18.99 41.45 2.32
488 2133 6.261381 ACAAATTCAGTGCTTCAAAATGCATT 59.739 30.769 5.99 5.99 41.45 3.56
489 2134 5.761234 ACAAATTCAGTGCTTCAAAATGCAT 59.239 32.000 0.00 0.00 41.45 3.96
490 2135 5.117584 ACAAATTCAGTGCTTCAAAATGCA 58.882 33.333 0.00 0.00 36.79 3.96
491 2136 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
492 2137 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
529 2174 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
530 2175 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
531 2176 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
532 2177 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
533 2178 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
534 2179 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
535 2180 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
536 2181 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
537 2182 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
538 2183 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
539 2184 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
540 2185 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
541 2186 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
542 2187 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
543 2188 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
544 2189 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
545 2190 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
546 2191 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
547 2192 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
548 2193 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
549 2194 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
550 2195 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
551 2196 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
552 2197 5.068987 AGTTCTAAGTGCCTGCAAAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
553 2198 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
554 2199 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
555 2200 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
556 2201 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
557 2202 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
558 2203 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
559 2204 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
560 2205 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
561 2206 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
562 2207 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
563 2208 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
564 2209 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
565 2210 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
566 2211 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
567 2212 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
568 2213 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
569 2214 8.335356 CGAGAGAAACATTGACAAAAGTTCTAA 58.665 33.333 9.09 0.00 0.00 2.10
570 2215 7.709182 TCGAGAGAAACATTGACAAAAGTTCTA 59.291 33.333 9.09 0.00 37.03 2.10
571 2216 6.538742 TCGAGAGAAACATTGACAAAAGTTCT 59.461 34.615 9.09 9.17 37.03 3.01
572 2217 6.715464 TCGAGAGAAACATTGACAAAAGTTC 58.285 36.000 9.09 5.33 37.03 3.01
573 2218 6.677781 TCGAGAGAAACATTGACAAAAGTT 57.322 33.333 0.00 0.00 37.03 2.66
630 2275 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
631 2276 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
632 2277 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
633 2278 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
634 2279 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
635 2280 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
636 2281 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
637 2282 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
638 2283 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
639 2284 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
640 2285 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
641 2286 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
642 2287 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
657 2302 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
658 2303 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
659 2304 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
660 2305 1.123077 ATTCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
661 2306 0.463295 CATTCTGCACCCGAGCTCAT 60.463 55.000 15.40 0.00 34.99 2.90
662 2307 1.078918 CATTCTGCACCCGAGCTCA 60.079 57.895 15.40 0.00 34.99 4.26
663 2308 0.391661 TTCATTCTGCACCCGAGCTC 60.392 55.000 2.73 2.73 34.99 4.09
664 2309 0.674895 GTTCATTCTGCACCCGAGCT 60.675 55.000 0.00 0.00 34.99 4.09
665 2310 0.674895 AGTTCATTCTGCACCCGAGC 60.675 55.000 0.00 0.00 0.00 5.03
666 2311 1.813513 AAGTTCATTCTGCACCCGAG 58.186 50.000 0.00 0.00 0.00 4.63
667 2312 2.270352 AAAGTTCATTCTGCACCCGA 57.730 45.000 0.00 0.00 0.00 5.14
668 2313 2.665519 CGAAAAGTTCATTCTGCACCCG 60.666 50.000 0.00 0.00 0.00 5.28
669 2314 2.922335 GCGAAAAGTTCATTCTGCACCC 60.922 50.000 0.00 0.00 0.00 4.61
670 2315 2.030805 AGCGAAAAGTTCATTCTGCACC 60.031 45.455 0.00 0.00 32.58 5.01
671 2316 3.273919 AGCGAAAAGTTCATTCTGCAC 57.726 42.857 0.00 0.00 32.58 4.57
672 2317 4.754618 TCTTAGCGAAAAGTTCATTCTGCA 59.245 37.500 0.00 0.00 32.58 4.41
673 2318 5.283060 TCTTAGCGAAAAGTTCATTCTGC 57.717 39.130 0.00 0.00 0.00 4.26
674 2319 7.112148 GTGTTTCTTAGCGAAAAGTTCATTCTG 59.888 37.037 0.00 0.00 42.87 3.02
675 2320 7.012421 AGTGTTTCTTAGCGAAAAGTTCATTCT 59.988 33.333 0.00 0.00 42.87 2.40
676 2321 7.132863 AGTGTTTCTTAGCGAAAAGTTCATTC 58.867 34.615 0.00 0.00 42.87 2.67
677 2322 7.012421 AGAGTGTTTCTTAGCGAAAAGTTCATT 59.988 33.333 0.00 0.00 42.87 2.57
678 2323 6.483640 AGAGTGTTTCTTAGCGAAAAGTTCAT 59.516 34.615 0.00 0.00 42.87 2.57
679 2324 5.815740 AGAGTGTTTCTTAGCGAAAAGTTCA 59.184 36.000 0.00 0.00 42.87 3.18
680 2325 6.288426 AGAGTGTTTCTTAGCGAAAAGTTC 57.712 37.500 0.00 0.00 42.87 3.01
681 2326 6.679327 AAGAGTGTTTCTTAGCGAAAAGTT 57.321 33.333 0.00 0.00 44.32 2.66
682 2327 6.539103 AGAAAGAGTGTTTCTTAGCGAAAAGT 59.461 34.615 9.39 0.00 45.41 2.66
683 2328 6.949449 AGAAAGAGTGTTTCTTAGCGAAAAG 58.051 36.000 9.39 0.00 45.41 2.27
684 2329 6.761714 AGAGAAAGAGTGTTTCTTAGCGAAAA 59.238 34.615 15.76 0.00 45.41 2.29
685 2330 6.281405 AGAGAAAGAGTGTTTCTTAGCGAAA 58.719 36.000 15.76 0.00 45.41 3.46
686 2331 5.844004 AGAGAAAGAGTGTTTCTTAGCGAA 58.156 37.500 15.76 0.00 45.41 4.70
687 2332 5.455056 AGAGAAAGAGTGTTTCTTAGCGA 57.545 39.130 15.76 0.00 45.41 4.93
688 2333 6.809196 ACATAGAGAAAGAGTGTTTCTTAGCG 59.191 38.462 15.76 8.59 45.41 4.26
689 2334 8.541133 AACATAGAGAAAGAGTGTTTCTTAGC 57.459 34.615 15.76 4.59 45.41 3.09
691 2336 9.832445 ACAAACATAGAGAAAGAGTGTTTCTTA 57.168 29.630 15.76 10.57 45.41 2.10
693 2338 7.169982 CGACAAACATAGAGAAAGAGTGTTTCT 59.830 37.037 14.69 14.69 40.02 2.52
694 2339 7.042658 ACGACAAACATAGAGAAAGAGTGTTTC 60.043 37.037 4.61 4.61 40.02 2.78
960 2606 1.082690 GCTCTGCTAGTTGAACAGCC 58.917 55.000 14.13 0.00 36.95 4.85
1200 2846 4.713946 GGCACGGTCATGAAGGAA 57.286 55.556 0.00 0.00 0.00 3.36
1561 3207 1.341531 AGGGATGTTTCGGCTATCTCG 59.658 52.381 0.00 0.00 0.00 4.04
1657 3303 1.679032 GCCTTCCATACCGCACTCTTT 60.679 52.381 0.00 0.00 0.00 2.52
1659 3305 0.978146 AGCCTTCCATACCGCACTCT 60.978 55.000 0.00 0.00 0.00 3.24
1899 3545 1.224120 TCCTCTATGCCCATCCTCCTT 59.776 52.381 0.00 0.00 0.00 3.36
2001 3647 2.488891 CCTTCCAAACCCACTGACATCA 60.489 50.000 0.00 0.00 0.00 3.07
2076 3722 6.476053 GCTCTACTCGAAATTTAGTCGGAAAT 59.524 38.462 0.00 0.00 39.01 2.17
2084 3730 7.155858 GCTAGTTGCTCTACTCGAAATTTAG 57.844 40.000 0.00 0.00 38.95 1.85
2151 3798 4.376340 ACTATGCAAAAACCAGCTATGC 57.624 40.909 0.00 0.00 37.52 3.14
2156 3803 5.125417 TCATCCTAACTATGCAAAAACCAGC 59.875 40.000 0.00 0.00 0.00 4.85
2162 3809 8.978874 ATGTACATCATCCTAACTATGCAAAA 57.021 30.769 1.41 0.00 29.76 2.44
2208 3855 3.067320 GGGGCTAAAAGATGATTGAGTGC 59.933 47.826 0.00 0.00 0.00 4.40
2216 3863 1.134401 CGCAGAGGGGCTAAAAGATGA 60.134 52.381 0.00 0.00 0.00 2.92
2231 3878 0.685097 AGTGCTAGGGTTTTCGCAGA 59.315 50.000 0.00 0.00 32.38 4.26
2232 3879 0.798776 CAGTGCTAGGGTTTTCGCAG 59.201 55.000 0.00 0.00 32.38 5.18
2235 3882 1.878953 ACACAGTGCTAGGGTTTTCG 58.121 50.000 0.00 0.00 0.00 3.46
2247 3894 3.162202 TGCAAACATCCAAACACAGTG 57.838 42.857 0.00 0.00 0.00 3.66
2248 3895 4.370917 GAATGCAAACATCCAAACACAGT 58.629 39.130 0.00 0.00 34.62 3.55
2249 3896 3.426191 CGAATGCAAACATCCAAACACAG 59.574 43.478 0.00 0.00 34.62 3.66
2250 3897 3.379240 CGAATGCAAACATCCAAACACA 58.621 40.909 0.00 0.00 34.62 3.72
2251 3898 2.730928 CCGAATGCAAACATCCAAACAC 59.269 45.455 0.00 0.00 34.62 3.32
2252 3899 2.288702 CCCGAATGCAAACATCCAAACA 60.289 45.455 0.00 0.00 34.62 2.83
2253 3900 2.336667 CCCGAATGCAAACATCCAAAC 58.663 47.619 0.00 0.00 34.62 2.93
2254 3901 1.337635 GCCCGAATGCAAACATCCAAA 60.338 47.619 0.00 0.00 34.62 3.28
2255 3902 0.246086 GCCCGAATGCAAACATCCAA 59.754 50.000 0.00 0.00 34.62 3.53
2256 3903 1.603236 GGCCCGAATGCAAACATCCA 61.603 55.000 0.00 0.00 34.62 3.41
2257 3904 1.141665 GGCCCGAATGCAAACATCC 59.858 57.895 0.00 0.00 34.62 3.51
2258 3905 1.334869 CTAGGCCCGAATGCAAACATC 59.665 52.381 0.00 0.00 34.62 3.06
2259 3906 1.340991 ACTAGGCCCGAATGCAAACAT 60.341 47.619 0.00 0.00 38.49 2.71
2260 3907 0.037590 ACTAGGCCCGAATGCAAACA 59.962 50.000 0.00 0.00 0.00 2.83
2261 3908 2.032680 TACTAGGCCCGAATGCAAAC 57.967 50.000 0.00 0.00 0.00 2.93
2262 3909 2.948979 CAATACTAGGCCCGAATGCAAA 59.051 45.455 0.00 0.00 0.00 3.68
2263 3910 2.171659 TCAATACTAGGCCCGAATGCAA 59.828 45.455 0.00 0.00 0.00 4.08
2264 3911 1.765904 TCAATACTAGGCCCGAATGCA 59.234 47.619 0.00 0.00 0.00 3.96
2265 3912 2.224305 ACTCAATACTAGGCCCGAATGC 60.224 50.000 0.00 0.00 0.00 3.56
2266 3913 3.753294 ACTCAATACTAGGCCCGAATG 57.247 47.619 0.00 0.00 0.00 2.67
2267 3914 5.280011 CCAATACTCAATACTAGGCCCGAAT 60.280 44.000 0.00 0.00 0.00 3.34
2268 3915 4.039973 CCAATACTCAATACTAGGCCCGAA 59.960 45.833 0.00 0.00 0.00 4.30
2269 3916 3.576982 CCAATACTCAATACTAGGCCCGA 59.423 47.826 0.00 0.00 0.00 5.14
2270 3917 3.864921 GCCAATACTCAATACTAGGCCCG 60.865 52.174 0.00 0.00 34.94 6.13
2271 3918 3.328050 AGCCAATACTCAATACTAGGCCC 59.672 47.826 0.00 0.00 41.69 5.80
2272 3919 4.625607 AGCCAATACTCAATACTAGGCC 57.374 45.455 0.00 0.00 41.69 5.19
2273 3920 5.177696 CGAAAGCCAATACTCAATACTAGGC 59.822 44.000 0.00 0.00 41.08 3.93
2274 3921 6.281405 ACGAAAGCCAATACTCAATACTAGG 58.719 40.000 0.00 0.00 0.00 3.02
2275 3922 7.772332 AACGAAAGCCAATACTCAATACTAG 57.228 36.000 0.00 0.00 0.00 2.57
2276 3923 7.065324 CCAAACGAAAGCCAATACTCAATACTA 59.935 37.037 0.00 0.00 0.00 1.82
2277 3924 6.128007 CCAAACGAAAGCCAATACTCAATACT 60.128 38.462 0.00 0.00 0.00 2.12
2278 3925 6.027749 CCAAACGAAAGCCAATACTCAATAC 58.972 40.000 0.00 0.00 0.00 1.89
2279 3926 5.124776 CCCAAACGAAAGCCAATACTCAATA 59.875 40.000 0.00 0.00 0.00 1.90
2280 3927 4.082245 CCCAAACGAAAGCCAATACTCAAT 60.082 41.667 0.00 0.00 0.00 2.57
2281 3928 3.254657 CCCAAACGAAAGCCAATACTCAA 59.745 43.478 0.00 0.00 0.00 3.02
2282 3929 2.817258 CCCAAACGAAAGCCAATACTCA 59.183 45.455 0.00 0.00 0.00 3.41
2283 3930 2.817844 ACCCAAACGAAAGCCAATACTC 59.182 45.455 0.00 0.00 0.00 2.59
2284 3931 2.871453 ACCCAAACGAAAGCCAATACT 58.129 42.857 0.00 0.00 0.00 2.12
2285 3932 3.004944 TCAACCCAAACGAAAGCCAATAC 59.995 43.478 0.00 0.00 0.00 1.89
2286 3933 3.223435 TCAACCCAAACGAAAGCCAATA 58.777 40.909 0.00 0.00 0.00 1.90
2287 3934 2.035632 TCAACCCAAACGAAAGCCAAT 58.964 42.857 0.00 0.00 0.00 3.16
2288 3935 1.475403 TCAACCCAAACGAAAGCCAA 58.525 45.000 0.00 0.00 0.00 4.52
2289 3936 1.475403 TTCAACCCAAACGAAAGCCA 58.525 45.000 0.00 0.00 0.00 4.75
2290 3937 2.812358 ATTCAACCCAAACGAAAGCC 57.188 45.000 0.00 0.00 0.00 4.35
2291 3938 4.421058 GGATATTCAACCCAAACGAAAGC 58.579 43.478 0.00 0.00 0.00 3.51
2292 3939 4.438200 CGGGATATTCAACCCAAACGAAAG 60.438 45.833 0.00 0.00 45.83 2.62
2293 3940 3.440872 CGGGATATTCAACCCAAACGAAA 59.559 43.478 0.00 0.00 45.83 3.46
2294 3941 3.011119 CGGGATATTCAACCCAAACGAA 58.989 45.455 0.00 0.00 45.83 3.85
2295 3942 2.236644 TCGGGATATTCAACCCAAACGA 59.763 45.455 0.00 0.00 45.83 3.85
2296 3943 2.634600 TCGGGATATTCAACCCAAACG 58.365 47.619 0.00 0.00 45.83 3.60
2297 3944 5.009310 GGTATTCGGGATATTCAACCCAAAC 59.991 44.000 0.00 0.00 45.83 2.93
2298 3945 5.134661 GGTATTCGGGATATTCAACCCAAA 58.865 41.667 0.00 0.00 45.83 3.28
2299 3946 4.721132 GGTATTCGGGATATTCAACCCAA 58.279 43.478 0.00 0.00 45.83 4.12
2300 3947 3.244284 CGGTATTCGGGATATTCAACCCA 60.244 47.826 0.00 0.00 45.83 4.51
2301 3948 3.332034 CGGTATTCGGGATATTCAACCC 58.668 50.000 0.00 0.00 42.43 4.11
2302 3949 2.740447 GCGGTATTCGGGATATTCAACC 59.260 50.000 0.00 0.00 39.69 3.77
2303 3950 2.740447 GGCGGTATTCGGGATATTCAAC 59.260 50.000 0.00 0.00 39.69 3.18
2304 3951 2.610976 CGGCGGTATTCGGGATATTCAA 60.611 50.000 0.00 0.00 39.69 2.69
2305 3952 1.067425 CGGCGGTATTCGGGATATTCA 60.067 52.381 0.00 0.00 39.69 2.57
2306 3953 1.067354 ACGGCGGTATTCGGGATATTC 60.067 52.381 13.24 0.00 39.69 1.75
2307 3954 0.971386 ACGGCGGTATTCGGGATATT 59.029 50.000 13.24 0.00 39.69 1.28
2308 3955 0.971386 AACGGCGGTATTCGGGATAT 59.029 50.000 13.24 0.00 39.69 1.63
2309 3956 0.752054 AAACGGCGGTATTCGGGATA 59.248 50.000 13.24 0.00 39.69 2.59
2310 3957 0.812412 CAAACGGCGGTATTCGGGAT 60.812 55.000 13.24 0.00 39.69 3.85
2311 3958 1.448189 CAAACGGCGGTATTCGGGA 60.448 57.895 13.24 0.00 39.69 5.14
2312 3959 3.095032 CAAACGGCGGTATTCGGG 58.905 61.111 13.24 0.00 39.69 5.14
2313 3960 2.401990 GCAAACGGCGGTATTCGG 59.598 61.111 13.24 0.00 39.69 4.30
2322 3969 1.067915 TGCCAAGATTAAGCAAACGGC 60.068 47.619 5.95 5.95 45.30 5.68
2323 3970 3.508744 ATGCCAAGATTAAGCAAACGG 57.491 42.857 0.00 0.00 40.46 4.44
2324 3971 4.484236 TGAATGCCAAGATTAAGCAAACG 58.516 39.130 0.00 0.00 40.46 3.60
2325 3972 4.328169 GCTGAATGCCAAGATTAAGCAAAC 59.672 41.667 0.00 0.00 39.03 2.93
2326 3973 4.221262 AGCTGAATGCCAAGATTAAGCAAA 59.779 37.500 6.61 0.00 40.95 3.68
2327 3974 3.765511 AGCTGAATGCCAAGATTAAGCAA 59.234 39.130 6.61 0.00 40.95 3.91
2328 3975 3.359033 AGCTGAATGCCAAGATTAAGCA 58.641 40.909 6.61 0.00 40.95 3.91
2329 3976 3.631227 AGAGCTGAATGCCAAGATTAAGC 59.369 43.478 0.00 0.00 44.23 3.09
2330 3977 4.036498 CCAGAGCTGAATGCCAAGATTAAG 59.964 45.833 0.00 0.00 44.23 1.85
2331 3978 3.949754 CCAGAGCTGAATGCCAAGATTAA 59.050 43.478 0.00 0.00 44.23 1.40
2332 3979 3.548770 CCAGAGCTGAATGCCAAGATTA 58.451 45.455 0.00 0.00 44.23 1.75
2333 3980 2.376109 CCAGAGCTGAATGCCAAGATT 58.624 47.619 0.00 0.00 44.23 2.40
2334 3981 2.022754 GCCAGAGCTGAATGCCAAGAT 61.023 52.381 0.00 0.00 44.23 2.40
2335 3982 0.679002 GCCAGAGCTGAATGCCAAGA 60.679 55.000 0.00 0.00 44.23 3.02
2336 3983 0.963856 TGCCAGAGCTGAATGCCAAG 60.964 55.000 0.00 0.00 44.23 3.61
2337 3984 0.323999 ATGCCAGAGCTGAATGCCAA 60.324 50.000 0.00 0.00 44.23 4.52
2338 3985 0.323999 AATGCCAGAGCTGAATGCCA 60.324 50.000 0.00 0.00 44.23 4.92
2339 3986 0.384669 GAATGCCAGAGCTGAATGCC 59.615 55.000 0.00 0.00 44.23 4.40
2340 3987 0.029035 CGAATGCCAGAGCTGAATGC 59.971 55.000 0.00 0.00 40.80 3.56
2341 3988 0.661552 CCGAATGCCAGAGCTGAATG 59.338 55.000 0.00 0.00 40.80 2.67
2342 3989 0.465097 CCCGAATGCCAGAGCTGAAT 60.465 55.000 0.00 0.00 40.80 2.57
2343 3990 1.078214 CCCGAATGCCAGAGCTGAA 60.078 57.895 0.00 0.00 40.80 3.02
2344 3991 2.586245 CCCGAATGCCAGAGCTGA 59.414 61.111 0.00 0.00 40.80 4.26
2345 3992 3.207669 GCCCGAATGCCAGAGCTG 61.208 66.667 0.00 0.00 40.80 4.24
2346 3993 3.397613 GAGCCCGAATGCCAGAGCT 62.398 63.158 0.00 0.00 40.80 4.09
2347 3994 2.899339 GAGCCCGAATGCCAGAGC 60.899 66.667 0.00 0.00 40.48 4.09
2348 3995 2.587194 CGAGCCCGAATGCCAGAG 60.587 66.667 0.00 0.00 38.22 3.35
2349 3996 3.074369 TCGAGCCCGAATGCCAGA 61.074 61.111 0.00 0.00 42.51 3.86
2364 4011 0.110147 GGACTGGTCGCTCGATATCG 60.110 60.000 19.14 19.14 41.45 2.92
2365 4012 0.241481 GGGACTGGTCGCTCGATATC 59.759 60.000 9.96 0.00 39.18 1.63
2366 4013 1.516365 CGGGACTGGTCGCTCGATAT 61.516 60.000 14.16 0.00 39.99 1.63
2367 4014 2.184830 CGGGACTGGTCGCTCGATA 61.185 63.158 14.16 0.00 39.99 2.92
2368 4015 3.518998 CGGGACTGGTCGCTCGAT 61.519 66.667 14.16 0.00 39.99 3.59
2374 4021 4.680237 TGCTTGCGGGACTGGTCG 62.680 66.667 0.00 0.00 0.00 4.79
2375 4022 1.452145 TTTTGCTTGCGGGACTGGTC 61.452 55.000 0.00 0.00 0.00 4.02
2376 4023 1.040339 TTTTTGCTTGCGGGACTGGT 61.040 50.000 0.00 0.00 0.00 4.00
2377 4024 0.318955 CTTTTTGCTTGCGGGACTGG 60.319 55.000 0.00 0.00 0.00 4.00
2378 4025 0.940991 GCTTTTTGCTTGCGGGACTG 60.941 55.000 0.00 0.00 38.95 3.51
2379 4026 1.363807 GCTTTTTGCTTGCGGGACT 59.636 52.632 0.00 0.00 38.95 3.85
2380 4027 3.936653 GCTTTTTGCTTGCGGGAC 58.063 55.556 0.00 0.00 38.95 4.46
2389 4036 2.153547 TTGGGCCGCTAGCTTTTTGC 62.154 55.000 13.93 7.27 43.05 3.68
2390 4037 0.388520 GTTGGGCCGCTAGCTTTTTG 60.389 55.000 13.93 0.00 43.05 2.44
2391 4038 0.539669 AGTTGGGCCGCTAGCTTTTT 60.540 50.000 13.93 0.00 43.05 1.94
2392 4039 0.960861 GAGTTGGGCCGCTAGCTTTT 60.961 55.000 13.93 0.00 43.05 2.27
2393 4040 1.377333 GAGTTGGGCCGCTAGCTTT 60.377 57.895 13.93 0.00 43.05 3.51
2394 4041 2.269241 GAGTTGGGCCGCTAGCTT 59.731 61.111 13.93 0.00 43.05 3.74
2395 4042 4.148825 CGAGTTGGGCCGCTAGCT 62.149 66.667 13.93 0.00 43.05 3.32
2396 4043 2.955751 CTACGAGTTGGGCCGCTAGC 62.956 65.000 4.06 4.06 42.60 3.42
2397 4044 1.065928 CTACGAGTTGGGCCGCTAG 59.934 63.158 0.00 2.64 0.00 3.42
2398 4045 2.420568 CCTACGAGTTGGGCCGCTA 61.421 63.158 0.00 0.00 0.00 4.26
2399 4046 3.771160 CCTACGAGTTGGGCCGCT 61.771 66.667 0.00 0.00 0.00 5.52
2400 4047 4.832608 CCCTACGAGTTGGGCCGC 62.833 72.222 9.64 0.00 38.71 6.53
2405 4052 0.806102 CGCATCACCCTACGAGTTGG 60.806 60.000 0.00 0.00 0.00 3.77
2406 4053 0.806102 CCGCATCACCCTACGAGTTG 60.806 60.000 0.00 0.00 0.00 3.16
2407 4054 1.515954 CCGCATCACCCTACGAGTT 59.484 57.895 0.00 0.00 0.00 3.01
2408 4055 3.077519 GCCGCATCACCCTACGAGT 62.078 63.158 0.00 0.00 0.00 4.18
2409 4056 2.279517 GCCGCATCACCCTACGAG 60.280 66.667 0.00 0.00 0.00 4.18
2410 4057 3.845259 GGCCGCATCACCCTACGA 61.845 66.667 0.00 0.00 0.00 3.43
2411 4058 4.155733 TGGCCGCATCACCCTACG 62.156 66.667 0.00 0.00 0.00 3.51
2412 4059 2.513897 GTGGCCGCATCACCCTAC 60.514 66.667 12.58 0.00 0.00 3.18
2413 4060 4.155733 CGTGGCCGCATCACCCTA 62.156 66.667 18.18 0.00 0.00 3.53
2415 4062 2.933878 TAATCGTGGCCGCATCACCC 62.934 60.000 18.18 0.00 0.00 4.61
2416 4063 1.092921 TTAATCGTGGCCGCATCACC 61.093 55.000 18.18 0.00 0.00 4.02
2417 4064 0.944386 ATTAATCGTGGCCGCATCAC 59.056 50.000 18.18 0.00 0.00 3.06
2467 4114 4.183865 CGCTCTAATTCATTGACCTGTGA 58.816 43.478 0.00 0.00 0.00 3.58
2539 4186 2.821969 CAACTAGGCATGCAACCTTCTT 59.178 45.455 21.36 6.17 38.81 2.52
2561 4208 3.875727 ACTAGAATGCATGCACATGACTC 59.124 43.478 25.37 12.38 41.20 3.36
2735 4385 1.747355 GCAATATCTGTGCTGGTGCTT 59.253 47.619 0.00 0.00 39.00 3.91
2867 4517 2.688507 TGCTCGTGATCTTTTCTGGTC 58.311 47.619 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.