Multiple sequence alignment - TraesCS3A01G177200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G177200 chr3A 100.000 3652 0 0 1 3652 199411423 199415074 0.000000e+00 6745
1 TraesCS3A01G177200 chr3A 96.082 638 22 1 1 635 487077976 487078613 0.000000e+00 1037
2 TraesCS3A01G177200 chr5A 99.105 3016 27 0 637 3652 346306298 346309313 0.000000e+00 5421
3 TraesCS3A01G177200 chr5A 95.768 638 24 1 1 635 264633422 264632785 0.000000e+00 1026
4 TraesCS3A01G177200 chr5A 96.617 266 6 1 637 899 346313472 346313207 4.330000e-119 438
5 TraesCS3A01G177200 chr4B 98.939 3016 32 0 637 3652 139742625 139745640 0.000000e+00 5393
6 TraesCS3A01G177200 chr4B 97.283 2576 58 6 637 3201 2598691 2601265 0.000000e+00 4359
7 TraesCS3A01G177200 chr7B 98.334 2941 35 5 637 3566 554160477 554163414 0.000000e+00 5147
8 TraesCS3A01G177200 chr1A 98.870 2567 29 0 637 3203 63763699 63761133 0.000000e+00 4580
9 TraesCS3A01G177200 chr1A 95.611 638 25 1 1 635 76865143 76864506 0.000000e+00 1020
10 TraesCS3A01G177200 chr1A 98.390 559 8 1 3095 3652 320477403 320476845 0.000000e+00 981
11 TraesCS3A01G177200 chr1B 98.943 2554 27 0 637 3190 167930125 167927572 0.000000e+00 4567
12 TraesCS3A01G177200 chr1B 98.571 560 6 2 3095 3652 167927765 167927206 0.000000e+00 989
13 TraesCS3A01G177200 chr3B 98.152 2597 47 1 637 3233 681202908 681200313 0.000000e+00 4529
14 TraesCS3A01G177200 chr3B 97.931 2610 41 5 636 3233 731127042 731129650 0.000000e+00 4508
15 TraesCS3A01G177200 chr2A 98.533 2386 35 0 637 3022 672536853 672539238 0.000000e+00 4213
16 TraesCS3A01G177200 chr2A 95.768 638 24 1 1 635 386333017 386332380 0.000000e+00 1026
17 TraesCS3A01G177200 chr2A 95.761 637 23 2 3 635 149869246 149869882 0.000000e+00 1024
18 TraesCS3A01G177200 chr2A 93.502 277 4 5 637 899 672544097 672543821 2.040000e-107 399
19 TraesCS3A01G177200 chr2A 89.850 266 23 4 637 899 628686506 628686242 4.520000e-89 339
20 TraesCS3A01G177200 chr7A 95.768 638 24 1 1 635 229053867 229054504 0.000000e+00 1026
21 TraesCS3A01G177200 chr6A 95.768 638 24 1 1 635 172494028 172494665 0.000000e+00 1026
22 TraesCS3A01G177200 chr6A 95.768 638 24 1 1 635 445973272 445972635 0.000000e+00 1026
23 TraesCS3A01G177200 chr4A 95.768 638 24 1 1 635 199886038 199886675 0.000000e+00 1026
24 TraesCS3A01G177200 chr4A 98.748 559 6 1 3095 3652 683249681 683249123 0.000000e+00 992
25 TraesCS3A01G177200 chr5B 99.451 546 3 0 3107 3652 56908667 56909212 0.000000e+00 992
26 TraesCS3A01G177200 chr2B 98.390 559 8 1 3095 3652 652847488 652846930 0.000000e+00 981


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G177200 chr3A 199411423 199415074 3651 False 6745 6745 100.000 1 3652 1 chr3A.!!$F1 3651
1 TraesCS3A01G177200 chr3A 487077976 487078613 637 False 1037 1037 96.082 1 635 1 chr3A.!!$F2 634
2 TraesCS3A01G177200 chr5A 346306298 346309313 3015 False 5421 5421 99.105 637 3652 1 chr5A.!!$F1 3015
3 TraesCS3A01G177200 chr5A 264632785 264633422 637 True 1026 1026 95.768 1 635 1 chr5A.!!$R1 634
4 TraesCS3A01G177200 chr4B 139742625 139745640 3015 False 5393 5393 98.939 637 3652 1 chr4B.!!$F2 3015
5 TraesCS3A01G177200 chr4B 2598691 2601265 2574 False 4359 4359 97.283 637 3201 1 chr4B.!!$F1 2564
6 TraesCS3A01G177200 chr7B 554160477 554163414 2937 False 5147 5147 98.334 637 3566 1 chr7B.!!$F1 2929
7 TraesCS3A01G177200 chr1A 63761133 63763699 2566 True 4580 4580 98.870 637 3203 1 chr1A.!!$R1 2566
8 TraesCS3A01G177200 chr1A 76864506 76865143 637 True 1020 1020 95.611 1 635 1 chr1A.!!$R2 634
9 TraesCS3A01G177200 chr1A 320476845 320477403 558 True 981 981 98.390 3095 3652 1 chr1A.!!$R3 557
10 TraesCS3A01G177200 chr1B 167927206 167930125 2919 True 2778 4567 98.757 637 3652 2 chr1B.!!$R1 3015
11 TraesCS3A01G177200 chr3B 681200313 681202908 2595 True 4529 4529 98.152 637 3233 1 chr3B.!!$R1 2596
12 TraesCS3A01G177200 chr3B 731127042 731129650 2608 False 4508 4508 97.931 636 3233 1 chr3B.!!$F1 2597
13 TraesCS3A01G177200 chr2A 672536853 672539238 2385 False 4213 4213 98.533 637 3022 1 chr2A.!!$F2 2385
14 TraesCS3A01G177200 chr2A 386332380 386333017 637 True 1026 1026 95.768 1 635 1 chr2A.!!$R1 634
15 TraesCS3A01G177200 chr2A 149869246 149869882 636 False 1024 1024 95.761 3 635 1 chr2A.!!$F1 632
16 TraesCS3A01G177200 chr7A 229053867 229054504 637 False 1026 1026 95.768 1 635 1 chr7A.!!$F1 634
17 TraesCS3A01G177200 chr6A 172494028 172494665 637 False 1026 1026 95.768 1 635 1 chr6A.!!$F1 634
18 TraesCS3A01G177200 chr6A 445972635 445973272 637 True 1026 1026 95.768 1 635 1 chr6A.!!$R1 634
19 TraesCS3A01G177200 chr4A 199886038 199886675 637 False 1026 1026 95.768 1 635 1 chr4A.!!$F1 634
20 TraesCS3A01G177200 chr4A 683249123 683249681 558 True 992 992 98.748 3095 3652 1 chr4A.!!$R1 557
21 TraesCS3A01G177200 chr5B 56908667 56909212 545 False 992 992 99.451 3107 3652 1 chr5B.!!$F1 545
22 TraesCS3A01G177200 chr2B 652846930 652847488 558 True 981 981 98.390 3095 3652 1 chr2B.!!$R1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 465 0.036765 TCCCAACAAGCGCTATCGTT 60.037 50.0 12.05 12.35 38.14 3.85 F
479 483 0.466963 TTTAACGCCCCTAGCTAGGC 59.533 55.0 31.33 21.92 46.17 3.93 F
486 490 1.649321 CCCCTAGCTAGGCATGATGA 58.351 55.0 31.33 0.00 42.26 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 1970 5.711698 ACCTTCCTGGAAAAATAACAAGGA 58.288 37.500 10.86 0.0 39.71 3.36 R
2447 2583 5.841957 ACTTTGTGAACTCTGCATTCTTT 57.158 34.783 0.00 0.0 0.00 2.52 R
3575 3712 2.434336 TGGTGGTAGACATACTGGATGC 59.566 50.000 0.00 0.0 39.39 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 136 8.976353 AGAACAGTCTGTAGTAATCTGAATCAT 58.024 33.333 5.77 0.00 30.83 2.45
179 183 8.702163 AAAATTCACAAATAAATCGATGGACC 57.298 30.769 0.00 0.00 0.00 4.46
180 184 7.645058 AATTCACAAATAAATCGATGGACCT 57.355 32.000 0.00 0.00 0.00 3.85
181 185 6.435430 TTCACAAATAAATCGATGGACCTG 57.565 37.500 0.00 0.00 0.00 4.00
182 186 5.739959 TCACAAATAAATCGATGGACCTGA 58.260 37.500 0.00 0.00 0.00 3.86
183 187 5.817296 TCACAAATAAATCGATGGACCTGAG 59.183 40.000 0.00 0.00 0.00 3.35
184 188 5.586243 CACAAATAAATCGATGGACCTGAGT 59.414 40.000 0.00 0.00 0.00 3.41
185 189 6.761242 CACAAATAAATCGATGGACCTGAGTA 59.239 38.462 0.00 0.00 0.00 2.59
186 190 7.279981 CACAAATAAATCGATGGACCTGAGTAA 59.720 37.037 0.00 0.00 0.00 2.24
187 191 7.993183 ACAAATAAATCGATGGACCTGAGTAAT 59.007 33.333 0.00 0.00 0.00 1.89
188 192 8.840321 CAAATAAATCGATGGACCTGAGTAATT 58.160 33.333 0.00 0.00 0.00 1.40
189 193 8.980481 AATAAATCGATGGACCTGAGTAATTT 57.020 30.769 0.00 0.00 0.00 1.82
192 196 8.608844 AAATCGATGGACCTGAGTAATTTATC 57.391 34.615 0.00 0.00 0.00 1.75
193 197 6.978674 TCGATGGACCTGAGTAATTTATCT 57.021 37.500 0.00 0.00 0.00 1.98
194 198 8.651589 ATCGATGGACCTGAGTAATTTATCTA 57.348 34.615 0.00 0.00 0.00 1.98
195 199 8.651589 TCGATGGACCTGAGTAATTTATCTAT 57.348 34.615 0.00 0.00 0.00 1.98
196 200 9.090103 TCGATGGACCTGAGTAATTTATCTATT 57.910 33.333 0.00 0.00 0.00 1.73
247 251 7.992754 ATATCACTCTCCAGATAAAAATGGC 57.007 36.000 0.00 0.00 36.47 4.40
248 252 5.178096 TCACTCTCCAGATAAAAATGGCA 57.822 39.130 0.00 0.00 36.47 4.92
249 253 5.188434 TCACTCTCCAGATAAAAATGGCAG 58.812 41.667 0.00 0.00 36.47 4.85
250 254 3.950395 ACTCTCCAGATAAAAATGGCAGC 59.050 43.478 0.00 0.00 36.47 5.25
251 255 3.949754 CTCTCCAGATAAAAATGGCAGCA 59.050 43.478 0.00 0.00 36.47 4.41
252 256 4.343231 TCTCCAGATAAAAATGGCAGCAA 58.657 39.130 0.00 0.00 36.47 3.91
253 257 4.957954 TCTCCAGATAAAAATGGCAGCAAT 59.042 37.500 0.00 0.00 36.47 3.56
254 258 5.422970 TCTCCAGATAAAAATGGCAGCAATT 59.577 36.000 0.00 0.00 36.47 2.32
255 259 5.663456 TCCAGATAAAAATGGCAGCAATTC 58.337 37.500 0.00 0.00 36.47 2.17
256 260 5.422970 TCCAGATAAAAATGGCAGCAATTCT 59.577 36.000 0.00 0.00 36.47 2.40
257 261 5.751990 CCAGATAAAAATGGCAGCAATTCTC 59.248 40.000 0.00 0.00 0.00 2.87
258 262 5.457799 CAGATAAAAATGGCAGCAATTCTCG 59.542 40.000 0.00 0.00 0.00 4.04
259 263 3.665745 AAAAATGGCAGCAATTCTCGT 57.334 38.095 0.00 0.00 0.00 4.18
260 264 2.642139 AAATGGCAGCAATTCTCGTG 57.358 45.000 0.00 0.00 0.00 4.35
261 265 1.825090 AATGGCAGCAATTCTCGTGA 58.175 45.000 0.00 0.00 0.00 4.35
262 266 1.376543 ATGGCAGCAATTCTCGTGAG 58.623 50.000 0.00 0.00 0.00 3.51
263 267 1.300971 TGGCAGCAATTCTCGTGAGC 61.301 55.000 0.00 0.00 0.00 4.26
264 268 1.059994 GCAGCAATTCTCGTGAGCG 59.940 57.895 0.00 0.00 39.92 5.03
265 269 1.059994 CAGCAATTCTCGTGAGCGC 59.940 57.895 0.00 0.00 38.14 5.92
266 270 1.079543 AGCAATTCTCGTGAGCGCT 60.080 52.632 11.27 11.27 38.14 5.92
267 271 0.173481 AGCAATTCTCGTGAGCGCTA 59.827 50.000 11.50 0.00 38.14 4.26
268 272 0.999406 GCAATTCTCGTGAGCGCTAA 59.001 50.000 11.50 0.00 38.14 3.09
269 273 1.393539 GCAATTCTCGTGAGCGCTAAA 59.606 47.619 11.50 0.00 38.14 1.85
270 274 2.535732 GCAATTCTCGTGAGCGCTAAAG 60.536 50.000 11.50 5.33 38.14 1.85
271 275 2.656560 ATTCTCGTGAGCGCTAAAGT 57.343 45.000 11.50 0.00 38.14 2.66
272 276 2.433868 TTCTCGTGAGCGCTAAAGTT 57.566 45.000 11.50 0.00 38.14 2.66
273 277 2.433868 TCTCGTGAGCGCTAAAGTTT 57.566 45.000 11.50 0.00 38.14 2.66
274 278 2.325761 TCTCGTGAGCGCTAAAGTTTC 58.674 47.619 11.50 0.00 38.14 2.78
275 279 2.030185 TCTCGTGAGCGCTAAAGTTTCT 60.030 45.455 11.50 0.00 38.14 2.52
276 280 2.058798 TCGTGAGCGCTAAAGTTTCTG 58.941 47.619 11.50 0.00 38.14 3.02
277 281 1.792949 CGTGAGCGCTAAAGTTTCTGT 59.207 47.619 11.50 0.00 0.00 3.41
278 282 2.221055 CGTGAGCGCTAAAGTTTCTGTT 59.779 45.455 11.50 0.00 0.00 3.16
279 283 3.303132 CGTGAGCGCTAAAGTTTCTGTTT 60.303 43.478 11.50 0.00 0.00 2.83
280 284 4.598062 GTGAGCGCTAAAGTTTCTGTTTT 58.402 39.130 11.50 0.00 0.00 2.43
281 285 5.034797 GTGAGCGCTAAAGTTTCTGTTTTT 58.965 37.500 11.50 0.00 0.00 1.94
302 306 6.882610 TTTTACAGCATGATCAACAAGACT 57.117 33.333 0.00 0.00 39.69 3.24
303 307 6.882610 TTTACAGCATGATCAACAAGACTT 57.117 33.333 0.00 0.00 39.69 3.01
304 308 6.882610 TTACAGCATGATCAACAAGACTTT 57.117 33.333 0.00 0.00 39.69 2.66
305 309 5.368256 ACAGCATGATCAACAAGACTTTC 57.632 39.130 0.00 0.00 39.69 2.62
306 310 4.217118 ACAGCATGATCAACAAGACTTTCC 59.783 41.667 0.00 0.00 39.69 3.13
307 311 3.760684 AGCATGATCAACAAGACTTTCCC 59.239 43.478 0.00 0.00 0.00 3.97
308 312 3.119352 GCATGATCAACAAGACTTTCCCC 60.119 47.826 0.00 0.00 0.00 4.81
309 313 3.874383 TGATCAACAAGACTTTCCCCA 57.126 42.857 0.00 0.00 0.00 4.96
310 314 4.387026 TGATCAACAAGACTTTCCCCAT 57.613 40.909 0.00 0.00 0.00 4.00
311 315 4.081406 TGATCAACAAGACTTTCCCCATG 58.919 43.478 0.00 0.00 0.00 3.66
312 316 3.593442 TCAACAAGACTTTCCCCATGT 57.407 42.857 0.00 0.00 0.00 3.21
313 317 3.486383 TCAACAAGACTTTCCCCATGTC 58.514 45.455 0.00 0.00 0.00 3.06
314 318 3.138283 TCAACAAGACTTTCCCCATGTCT 59.862 43.478 0.00 0.00 40.78 3.41
315 319 3.884037 ACAAGACTTTCCCCATGTCTT 57.116 42.857 0.00 0.00 46.14 3.01
316 320 3.756117 ACAAGACTTTCCCCATGTCTTC 58.244 45.455 4.84 0.00 44.35 2.87
317 321 3.084786 CAAGACTTTCCCCATGTCTTCC 58.915 50.000 4.84 0.00 44.35 3.46
318 322 1.636003 AGACTTTCCCCATGTCTTCCC 59.364 52.381 0.00 0.00 36.68 3.97
319 323 1.354368 GACTTTCCCCATGTCTTCCCA 59.646 52.381 0.00 0.00 0.00 4.37
320 324 1.786441 ACTTTCCCCATGTCTTCCCAA 59.214 47.619 0.00 0.00 0.00 4.12
321 325 2.178984 ACTTTCCCCATGTCTTCCCAAA 59.821 45.455 0.00 0.00 0.00 3.28
322 326 2.603075 TTCCCCATGTCTTCCCAAAG 57.397 50.000 0.00 0.00 0.00 2.77
323 327 0.704076 TCCCCATGTCTTCCCAAAGG 59.296 55.000 0.00 0.00 33.03 3.11
324 328 0.409484 CCCCATGTCTTCCCAAAGGT 59.591 55.000 0.00 0.00 33.03 3.50
325 329 1.203174 CCCCATGTCTTCCCAAAGGTT 60.203 52.381 0.00 0.00 33.03 3.50
326 330 2.171003 CCCATGTCTTCCCAAAGGTTC 58.829 52.381 0.00 0.00 33.03 3.62
327 331 2.225117 CCCATGTCTTCCCAAAGGTTCT 60.225 50.000 0.00 0.00 33.03 3.01
328 332 3.010138 CCCATGTCTTCCCAAAGGTTCTA 59.990 47.826 0.00 0.00 33.03 2.10
329 333 4.010349 CCATGTCTTCCCAAAGGTTCTAC 58.990 47.826 0.00 0.00 33.03 2.59
330 334 4.263506 CCATGTCTTCCCAAAGGTTCTACT 60.264 45.833 0.00 0.00 33.03 2.57
331 335 5.316987 CATGTCTTCCCAAAGGTTCTACTT 58.683 41.667 0.00 0.00 33.03 2.24
332 336 4.714632 TGTCTTCCCAAAGGTTCTACTTG 58.285 43.478 0.00 0.00 33.03 3.16
333 337 4.072839 GTCTTCCCAAAGGTTCTACTTGG 58.927 47.826 0.00 0.00 33.03 3.61
334 338 2.579410 TCCCAAAGGTTCTACTTGGC 57.421 50.000 0.00 0.00 0.00 4.52
335 339 1.777878 TCCCAAAGGTTCTACTTGGCA 59.222 47.619 0.00 0.00 0.00 4.92
336 340 1.886542 CCCAAAGGTTCTACTTGGCAC 59.113 52.381 0.00 0.00 0.00 5.01
337 341 2.582052 CCAAAGGTTCTACTTGGCACA 58.418 47.619 0.00 0.00 0.00 4.57
354 358 5.907207 TGGCACAAACACTAATTAAAAGCA 58.093 33.333 0.00 0.00 31.92 3.91
355 359 6.520272 TGGCACAAACACTAATTAAAAGCAT 58.480 32.000 0.00 0.00 31.92 3.79
356 360 7.661968 TGGCACAAACACTAATTAAAAGCATA 58.338 30.769 0.00 0.00 31.92 3.14
357 361 8.144478 TGGCACAAACACTAATTAAAAGCATAA 58.856 29.630 0.00 0.00 31.92 1.90
358 362 8.983724 GGCACAAACACTAATTAAAAGCATAAA 58.016 29.630 0.00 0.00 0.00 1.40
376 380 8.225603 AGCATAAAACCACATCTAAACATAGG 57.774 34.615 0.00 0.00 0.00 2.57
377 381 6.918022 GCATAAAACCACATCTAAACATAGGC 59.082 38.462 0.00 0.00 0.00 3.93
378 382 7.201821 GCATAAAACCACATCTAAACATAGGCT 60.202 37.037 0.00 0.00 0.00 4.58
379 383 9.337396 CATAAAACCACATCTAAACATAGGCTA 57.663 33.333 0.00 0.00 0.00 3.93
380 384 7.865706 AAAACCACATCTAAACATAGGCTAG 57.134 36.000 0.00 0.00 0.00 3.42
381 385 6.808321 AACCACATCTAAACATAGGCTAGA 57.192 37.500 0.00 0.00 0.00 2.43
382 386 7.380423 AACCACATCTAAACATAGGCTAGAT 57.620 36.000 0.00 0.00 33.58 1.98
384 388 6.554982 ACCACATCTAAACATAGGCTAGATGA 59.445 38.462 22.95 7.13 46.36 2.92
385 389 7.071196 ACCACATCTAAACATAGGCTAGATGAA 59.929 37.037 22.95 0.33 46.36 2.57
386 390 8.099537 CCACATCTAAACATAGGCTAGATGAAT 58.900 37.037 22.95 5.27 46.36 2.57
387 391 9.499479 CACATCTAAACATAGGCTAGATGAATT 57.501 33.333 22.95 11.67 46.36 2.17
417 421 8.871686 ATTACTAAACAGGAACAAAAAGCAAG 57.128 30.769 0.00 0.00 0.00 4.01
418 422 5.660460 ACTAAACAGGAACAAAAAGCAAGG 58.340 37.500 0.00 0.00 0.00 3.61
419 423 4.817318 AAACAGGAACAAAAAGCAAGGA 57.183 36.364 0.00 0.00 0.00 3.36
420 424 4.817318 AACAGGAACAAAAAGCAAGGAA 57.183 36.364 0.00 0.00 0.00 3.36
421 425 5.357742 AACAGGAACAAAAAGCAAGGAAT 57.642 34.783 0.00 0.00 0.00 3.01
422 426 6.478512 AACAGGAACAAAAAGCAAGGAATA 57.521 33.333 0.00 0.00 0.00 1.75
423 427 6.478512 ACAGGAACAAAAAGCAAGGAATAA 57.521 33.333 0.00 0.00 0.00 1.40
424 428 6.883744 ACAGGAACAAAAAGCAAGGAATAAA 58.116 32.000 0.00 0.00 0.00 1.40
425 429 7.334858 ACAGGAACAAAAAGCAAGGAATAAAA 58.665 30.769 0.00 0.00 0.00 1.52
426 430 7.826744 ACAGGAACAAAAAGCAAGGAATAAAAA 59.173 29.630 0.00 0.00 0.00 1.94
427 431 8.839343 CAGGAACAAAAAGCAAGGAATAAAAAT 58.161 29.630 0.00 0.00 0.00 1.82
437 441 9.806448 AAGCAAGGAATAAAAATAAAATTGGGT 57.194 25.926 0.00 0.00 0.00 4.51
438 442 9.806448 AGCAAGGAATAAAAATAAAATTGGGTT 57.194 25.926 0.00 0.00 0.00 4.11
439 443 9.838975 GCAAGGAATAAAAATAAAATTGGGTTG 57.161 29.630 0.00 0.00 0.00 3.77
440 444 9.838975 CAAGGAATAAAAATAAAATTGGGTTGC 57.161 29.630 0.00 0.00 0.00 4.17
441 445 8.574251 AGGAATAAAAATAAAATTGGGTTGCC 57.426 30.769 0.00 0.00 0.00 4.52
442 446 8.390143 AGGAATAAAAATAAAATTGGGTTGCCT 58.610 29.630 0.00 0.00 0.00 4.75
443 447 8.673711 GGAATAAAAATAAAATTGGGTTGCCTC 58.326 33.333 0.00 0.00 0.00 4.70
444 448 8.574251 AATAAAAATAAAATTGGGTTGCCTCC 57.426 30.769 0.00 0.00 0.00 4.30
454 458 3.294493 TTGCCTCCCAACAAGCGC 61.294 61.111 0.00 0.00 0.00 5.92
455 459 3.790416 TTGCCTCCCAACAAGCGCT 62.790 57.895 2.64 2.64 0.00 5.92
456 460 2.046314 GCCTCCCAACAAGCGCTA 60.046 61.111 12.05 0.00 0.00 4.26
457 461 1.452108 GCCTCCCAACAAGCGCTAT 60.452 57.895 12.05 0.00 0.00 2.97
458 462 1.440145 GCCTCCCAACAAGCGCTATC 61.440 60.000 12.05 0.00 0.00 2.08
459 463 1.154205 CCTCCCAACAAGCGCTATCG 61.154 60.000 12.05 4.88 39.07 2.92
460 464 0.460284 CTCCCAACAAGCGCTATCGT 60.460 55.000 12.05 5.66 38.14 3.73
461 465 0.036765 TCCCAACAAGCGCTATCGTT 60.037 50.000 12.05 12.35 38.14 3.85
462 466 0.802494 CCCAACAAGCGCTATCGTTT 59.198 50.000 12.05 0.00 39.71 3.60
463 467 2.004017 CCCAACAAGCGCTATCGTTTA 58.996 47.619 12.05 0.00 37.02 2.01
464 468 2.417239 CCCAACAAGCGCTATCGTTTAA 59.583 45.455 12.05 0.00 37.02 1.52
465 469 3.413558 CCAACAAGCGCTATCGTTTAAC 58.586 45.455 12.05 0.00 37.02 2.01
466 470 3.081445 CAACAAGCGCTATCGTTTAACG 58.919 45.455 12.05 11.60 44.19 3.18
468 472 4.866301 GCGCTATCGTTTAACGCC 57.134 55.556 13.06 0.51 43.58 5.68
469 473 1.274770 GCGCTATCGTTTAACGCCC 59.725 57.895 13.06 0.17 43.58 6.13
470 474 1.929376 CGCTATCGTTTAACGCCCC 59.071 57.895 13.06 0.51 42.21 5.80
471 475 0.529119 CGCTATCGTTTAACGCCCCT 60.529 55.000 13.06 0.31 42.21 4.79
472 476 1.269206 CGCTATCGTTTAACGCCCCTA 60.269 52.381 13.06 0.00 42.21 3.53
473 477 2.401351 GCTATCGTTTAACGCCCCTAG 58.599 52.381 13.06 11.03 42.21 3.02
474 478 2.401351 CTATCGTTTAACGCCCCTAGC 58.599 52.381 13.06 0.00 42.21 3.42
475 479 0.828677 ATCGTTTAACGCCCCTAGCT 59.171 50.000 13.06 0.00 42.21 3.32
476 480 1.473258 TCGTTTAACGCCCCTAGCTA 58.527 50.000 13.06 0.00 42.21 3.32
477 481 1.406539 TCGTTTAACGCCCCTAGCTAG 59.593 52.381 14.20 14.20 42.21 3.42
478 482 1.537562 CGTTTAACGCCCCTAGCTAGG 60.538 57.143 30.05 30.05 40.39 3.02
479 483 0.466963 TTTAACGCCCCTAGCTAGGC 59.533 55.000 31.33 21.92 46.17 3.93
486 490 1.649321 CCCCTAGCTAGGCATGATGA 58.351 55.000 31.33 0.00 42.26 2.92
487 491 2.194859 CCCCTAGCTAGGCATGATGAT 58.805 52.381 31.33 0.00 42.26 2.45
488 492 2.575279 CCCCTAGCTAGGCATGATGATT 59.425 50.000 31.33 0.00 42.26 2.57
489 493 3.009916 CCCCTAGCTAGGCATGATGATTT 59.990 47.826 31.33 0.00 42.26 2.17
490 494 4.260170 CCCTAGCTAGGCATGATGATTTC 58.740 47.826 31.33 0.00 42.26 2.17
491 495 4.263199 CCCTAGCTAGGCATGATGATTTCA 60.263 45.833 31.33 0.00 42.26 2.69
492 496 5.311265 CCTAGCTAGGCATGATGATTTCAA 58.689 41.667 26.62 0.00 35.71 2.69
493 497 5.944599 CCTAGCTAGGCATGATGATTTCAAT 59.055 40.000 26.62 0.00 35.71 2.57
494 498 5.707242 AGCTAGGCATGATGATTTCAATG 57.293 39.130 0.00 0.00 38.03 2.82
495 499 5.382616 AGCTAGGCATGATGATTTCAATGA 58.617 37.500 0.00 0.00 38.03 2.57
496 500 6.010850 AGCTAGGCATGATGATTTCAATGAT 58.989 36.000 0.00 0.00 38.03 2.45
497 501 6.071896 AGCTAGGCATGATGATTTCAATGATG 60.072 38.462 0.00 0.00 38.03 3.07
498 502 4.883083 AGGCATGATGATTTCAATGATGC 58.117 39.130 0.00 10.84 38.03 3.91
499 503 4.588951 AGGCATGATGATTTCAATGATGCT 59.411 37.500 15.54 5.58 38.03 3.79
500 504 4.923871 GGCATGATGATTTCAATGATGCTC 59.076 41.667 15.54 7.50 38.03 4.26
501 505 5.508994 GGCATGATGATTTCAATGATGCTCA 60.509 40.000 15.54 0.00 38.03 4.26
502 506 5.402568 GCATGATGATTTCAATGATGCTCAC 59.597 40.000 0.00 0.00 38.03 3.51
503 507 6.503524 CATGATGATTTCAATGATGCTCACA 58.496 36.000 0.00 0.00 38.03 3.58
504 508 6.709018 TGATGATTTCAATGATGCTCACAT 57.291 33.333 0.00 0.00 39.98 3.21
505 509 7.811117 TGATGATTTCAATGATGCTCACATA 57.189 32.000 0.00 0.00 36.35 2.29
506 510 8.228035 TGATGATTTCAATGATGCTCACATAA 57.772 30.769 0.00 0.00 36.35 1.90
507 511 8.688151 TGATGATTTCAATGATGCTCACATAAA 58.312 29.630 0.00 0.00 36.35 1.40
508 512 9.524106 GATGATTTCAATGATGCTCACATAAAA 57.476 29.630 0.00 0.00 36.35 1.52
509 513 8.920509 TGATTTCAATGATGCTCACATAAAAG 57.079 30.769 0.00 0.00 36.35 2.27
510 514 8.741841 TGATTTCAATGATGCTCACATAAAAGA 58.258 29.630 0.00 0.00 36.35 2.52
511 515 9.745880 GATTTCAATGATGCTCACATAAAAGAT 57.254 29.630 0.00 0.00 36.35 2.40
515 519 9.617523 TCAATGATGCTCACATAAAAGATAAGA 57.382 29.630 0.00 0.00 36.35 2.10
538 542 8.571461 AGAATTGAAACATAAAGAGAGCATCA 57.429 30.769 0.00 0.00 37.82 3.07
539 543 9.186837 AGAATTGAAACATAAAGAGAGCATCAT 57.813 29.630 0.00 0.00 37.82 2.45
540 544 9.234384 GAATTGAAACATAAAGAGAGCATCATG 57.766 33.333 0.00 0.00 37.82 3.07
541 545 7.926674 TTGAAACATAAAGAGAGCATCATGA 57.073 32.000 0.00 0.00 37.82 3.07
542 546 7.926674 TGAAACATAAAGAGAGCATCATGAA 57.073 32.000 0.00 0.00 37.82 2.57
543 547 7.982224 TGAAACATAAAGAGAGCATCATGAAG 58.018 34.615 0.00 0.00 37.82 3.02
544 548 7.825761 TGAAACATAAAGAGAGCATCATGAAGA 59.174 33.333 0.00 0.00 37.82 2.87
545 549 8.571461 AAACATAAAGAGAGCATCATGAAGAA 57.429 30.769 0.00 0.00 37.82 2.52
546 550 8.749026 AACATAAAGAGAGCATCATGAAGAAT 57.251 30.769 0.00 0.00 37.82 2.40
547 551 9.842775 AACATAAAGAGAGCATCATGAAGAATA 57.157 29.630 0.00 0.00 37.82 1.75
555 559 9.086336 GAGAGCATCATGAAGAATATAACTAGC 57.914 37.037 0.00 0.00 37.82 3.42
556 560 8.591940 AGAGCATCATGAAGAATATAACTAGCA 58.408 33.333 0.00 0.00 37.82 3.49
557 561 8.545229 AGCATCATGAAGAATATAACTAGCAC 57.455 34.615 0.00 0.00 0.00 4.40
558 562 8.152898 AGCATCATGAAGAATATAACTAGCACA 58.847 33.333 0.00 0.00 0.00 4.57
559 563 8.944029 GCATCATGAAGAATATAACTAGCACAT 58.056 33.333 0.00 0.00 0.00 3.21
572 576 8.959705 ATAACTAGCACATTTAAGTCTAACCC 57.040 34.615 0.00 0.00 0.00 4.11
573 577 6.368779 ACTAGCACATTTAAGTCTAACCCA 57.631 37.500 0.00 0.00 0.00 4.51
574 578 6.171213 ACTAGCACATTTAAGTCTAACCCAC 58.829 40.000 0.00 0.00 0.00 4.61
575 579 5.242795 AGCACATTTAAGTCTAACCCACT 57.757 39.130 0.00 0.00 0.00 4.00
576 580 5.631119 AGCACATTTAAGTCTAACCCACTT 58.369 37.500 0.00 0.00 37.80 3.16
577 581 5.705905 AGCACATTTAAGTCTAACCCACTTC 59.294 40.000 0.00 0.00 35.63 3.01
578 582 5.106277 GCACATTTAAGTCTAACCCACTTCC 60.106 44.000 0.00 0.00 35.63 3.46
579 583 6.238648 CACATTTAAGTCTAACCCACTTCCT 58.761 40.000 0.00 0.00 35.63 3.36
580 584 7.391620 CACATTTAAGTCTAACCCACTTCCTA 58.608 38.462 0.00 0.00 35.63 2.94
581 585 8.047310 CACATTTAAGTCTAACCCACTTCCTAT 58.953 37.037 0.00 0.00 35.63 2.57
582 586 8.047310 ACATTTAAGTCTAACCCACTTCCTATG 58.953 37.037 0.00 0.00 35.63 2.23
583 587 4.489306 AAGTCTAACCCACTTCCTATGC 57.511 45.455 0.00 0.00 27.00 3.14
584 588 3.450904 AGTCTAACCCACTTCCTATGCA 58.549 45.455 0.00 0.00 0.00 3.96
585 589 4.040755 AGTCTAACCCACTTCCTATGCAT 58.959 43.478 3.79 3.79 0.00 3.96
586 590 5.216622 AGTCTAACCCACTTCCTATGCATA 58.783 41.667 6.20 6.20 0.00 3.14
587 591 5.305644 AGTCTAACCCACTTCCTATGCATAG 59.694 44.000 24.33 24.33 0.00 2.23
599 603 5.954296 CCTATGCATAGGGATTTTGTGAG 57.046 43.478 36.06 12.91 44.97 3.51
600 604 4.217118 CCTATGCATAGGGATTTTGTGAGC 59.783 45.833 36.06 0.00 44.97 4.26
601 605 3.084536 TGCATAGGGATTTTGTGAGCA 57.915 42.857 0.00 0.00 0.00 4.26
602 606 3.429492 TGCATAGGGATTTTGTGAGCAA 58.571 40.909 0.00 0.00 0.00 3.91
603 607 3.831333 TGCATAGGGATTTTGTGAGCAAA 59.169 39.130 0.00 0.00 42.25 3.68
604 608 4.176271 GCATAGGGATTTTGTGAGCAAAC 58.824 43.478 0.00 0.00 43.47 2.93
605 609 4.321899 GCATAGGGATTTTGTGAGCAAACA 60.322 41.667 0.00 0.00 43.47 2.83
606 610 5.782047 CATAGGGATTTTGTGAGCAAACAA 58.218 37.500 0.47 0.47 43.47 2.83
607 611 4.058721 AGGGATTTTGTGAGCAAACAAC 57.941 40.909 3.91 0.00 43.47 3.32
608 612 3.706086 AGGGATTTTGTGAGCAAACAACT 59.294 39.130 3.91 0.00 43.47 3.16
609 613 4.162131 AGGGATTTTGTGAGCAAACAACTT 59.838 37.500 3.91 0.00 43.47 2.66
610 614 5.362430 AGGGATTTTGTGAGCAAACAACTTA 59.638 36.000 3.91 0.00 43.47 2.24
611 615 6.041979 AGGGATTTTGTGAGCAAACAACTTAT 59.958 34.615 3.91 0.00 43.47 1.73
612 616 6.146021 GGGATTTTGTGAGCAAACAACTTATG 59.854 38.462 3.91 0.00 43.47 1.90
613 617 6.146021 GGATTTTGTGAGCAAACAACTTATGG 59.854 38.462 3.91 0.00 43.47 2.74
614 618 4.582701 TTGTGAGCAAACAACTTATGGG 57.417 40.909 0.47 0.00 35.16 4.00
615 619 3.826524 TGTGAGCAAACAACTTATGGGA 58.173 40.909 0.00 0.00 0.00 4.37
616 620 4.211125 TGTGAGCAAACAACTTATGGGAA 58.789 39.130 0.00 0.00 0.00 3.97
617 621 4.037446 TGTGAGCAAACAACTTATGGGAAC 59.963 41.667 0.00 0.00 0.00 3.62
618 622 7.805557 TTGTGAGCAAACAACTTATGGGAACA 61.806 38.462 0.47 0.00 38.98 3.18
619 623 9.195075 TTGTGAGCAAACAACTTATGGGAACAA 62.195 37.037 0.47 0.00 38.43 2.83
1056 1073 1.961180 GCCTCCCGTACATGCACTCT 61.961 60.000 0.00 0.00 0.00 3.24
1228 1245 5.314923 TGATGCTAACTTGGATTTTGCTC 57.685 39.130 0.00 0.00 0.00 4.26
1229 1246 5.012239 TGATGCTAACTTGGATTTTGCTCT 58.988 37.500 0.00 0.00 0.00 4.09
1924 1941 6.316390 GGCATGAACTAACTGTTGCTTACTAT 59.684 38.462 2.69 0.00 39.30 2.12
2447 2583 3.521126 AGGCTCAAGAGAATTTGGAGCTA 59.479 43.478 11.20 0.00 34.53 3.32
2776 2912 6.360370 AGAACTAATTGTGAACTCTGGCTA 57.640 37.500 0.00 0.00 0.00 3.93
3566 3703 8.978472 AGTATCTAGTTACCACTTGCATAGAAA 58.022 33.333 7.25 0.00 34.06 2.52
3569 3706 9.988815 ATCTAGTTACCACTTGCATAGAAATAG 57.011 33.333 0.00 0.00 34.06 1.73
3575 3712 3.496130 CACTTGCATAGAAATAGCTCCCG 59.504 47.826 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 165 5.745227 ACTCAGGTCCATCGATTTATTTGT 58.255 37.500 0.00 0.00 0.00 2.83
162 166 7.786178 TTACTCAGGTCCATCGATTTATTTG 57.214 36.000 0.00 0.00 0.00 2.32
163 167 8.980481 AATTACTCAGGTCCATCGATTTATTT 57.020 30.769 0.00 0.00 0.00 1.40
164 168 8.980481 AAATTACTCAGGTCCATCGATTTATT 57.020 30.769 0.00 0.00 0.00 1.40
166 170 9.706691 GATAAATTACTCAGGTCCATCGATTTA 57.293 33.333 0.00 0.00 0.00 1.40
167 171 8.432805 AGATAAATTACTCAGGTCCATCGATTT 58.567 33.333 0.00 0.00 0.00 2.17
168 172 7.967908 AGATAAATTACTCAGGTCCATCGATT 58.032 34.615 0.00 0.00 0.00 3.34
169 173 7.546250 AGATAAATTACTCAGGTCCATCGAT 57.454 36.000 0.00 0.00 0.00 3.59
170 174 6.978674 AGATAAATTACTCAGGTCCATCGA 57.021 37.500 0.00 0.00 0.00 3.59
221 225 8.854117 GCCATTTTTATCTGGAGAGTGATATTT 58.146 33.333 0.00 0.00 34.24 1.40
222 226 8.000709 TGCCATTTTTATCTGGAGAGTGATATT 58.999 33.333 0.00 0.00 34.24 1.28
223 227 7.520798 TGCCATTTTTATCTGGAGAGTGATAT 58.479 34.615 0.00 0.00 34.24 1.63
224 228 6.899089 TGCCATTTTTATCTGGAGAGTGATA 58.101 36.000 0.00 0.00 34.24 2.15
225 229 5.759059 TGCCATTTTTATCTGGAGAGTGAT 58.241 37.500 0.00 0.00 34.24 3.06
226 230 5.178096 TGCCATTTTTATCTGGAGAGTGA 57.822 39.130 0.00 0.00 34.24 3.41
227 231 4.201990 GCTGCCATTTTTATCTGGAGAGTG 60.202 45.833 0.00 0.00 34.24 3.51
228 232 3.950395 GCTGCCATTTTTATCTGGAGAGT 59.050 43.478 0.00 0.00 34.24 3.24
229 233 3.949754 TGCTGCCATTTTTATCTGGAGAG 59.050 43.478 0.00 0.00 34.24 3.20
230 234 3.966979 TGCTGCCATTTTTATCTGGAGA 58.033 40.909 0.00 0.00 34.24 3.71
231 235 4.724074 TTGCTGCCATTTTTATCTGGAG 57.276 40.909 0.00 0.00 34.24 3.86
232 236 5.422970 AGAATTGCTGCCATTTTTATCTGGA 59.577 36.000 0.15 0.00 34.24 3.86
233 237 5.667466 AGAATTGCTGCCATTTTTATCTGG 58.333 37.500 0.15 0.00 35.53 3.86
234 238 5.457799 CGAGAATTGCTGCCATTTTTATCTG 59.542 40.000 0.15 0.00 0.00 2.90
235 239 5.126061 ACGAGAATTGCTGCCATTTTTATCT 59.874 36.000 0.15 0.00 0.00 1.98
236 240 5.230726 CACGAGAATTGCTGCCATTTTTATC 59.769 40.000 0.15 0.00 0.00 1.75
237 241 5.104374 CACGAGAATTGCTGCCATTTTTAT 58.896 37.500 0.15 0.00 0.00 1.40
238 242 4.217334 TCACGAGAATTGCTGCCATTTTTA 59.783 37.500 0.15 0.00 0.00 1.52
239 243 3.005684 TCACGAGAATTGCTGCCATTTTT 59.994 39.130 0.15 0.00 0.00 1.94
240 244 2.557924 TCACGAGAATTGCTGCCATTTT 59.442 40.909 0.15 0.00 0.00 1.82
241 245 2.161855 TCACGAGAATTGCTGCCATTT 58.838 42.857 0.15 0.00 0.00 2.32
242 246 1.741706 CTCACGAGAATTGCTGCCATT 59.258 47.619 0.00 0.00 0.00 3.16
243 247 1.376543 CTCACGAGAATTGCTGCCAT 58.623 50.000 0.00 0.00 0.00 4.40
244 248 1.300971 GCTCACGAGAATTGCTGCCA 61.301 55.000 0.00 0.00 0.00 4.92
245 249 1.427020 GCTCACGAGAATTGCTGCC 59.573 57.895 0.00 0.00 0.00 4.85
246 250 1.059994 CGCTCACGAGAATTGCTGC 59.940 57.895 0.00 0.00 43.93 5.25
247 251 1.059994 GCGCTCACGAGAATTGCTG 59.940 57.895 0.00 0.00 43.93 4.41
248 252 0.173481 TAGCGCTCACGAGAATTGCT 59.827 50.000 16.34 7.92 43.93 3.91
249 253 0.999406 TTAGCGCTCACGAGAATTGC 59.001 50.000 16.34 0.00 43.93 3.56
250 254 2.668457 ACTTTAGCGCTCACGAGAATTG 59.332 45.455 16.34 0.22 43.93 2.32
251 255 2.960819 ACTTTAGCGCTCACGAGAATT 58.039 42.857 16.34 0.00 43.93 2.17
252 256 2.656560 ACTTTAGCGCTCACGAGAAT 57.343 45.000 16.34 0.00 43.93 2.40
253 257 2.433868 AACTTTAGCGCTCACGAGAA 57.566 45.000 16.34 0.00 43.93 2.87
254 258 2.030185 AGAAACTTTAGCGCTCACGAGA 60.030 45.455 16.34 0.00 43.93 4.04
255 259 2.091277 CAGAAACTTTAGCGCTCACGAG 59.909 50.000 16.34 10.50 43.93 4.18
256 260 2.058798 CAGAAACTTTAGCGCTCACGA 58.941 47.619 16.34 0.00 43.93 4.35
257 261 1.792949 ACAGAAACTTTAGCGCTCACG 59.207 47.619 16.34 2.46 44.07 4.35
258 262 3.879932 AACAGAAACTTTAGCGCTCAC 57.120 42.857 16.34 0.00 0.00 3.51
259 263 4.893424 AAAACAGAAACTTTAGCGCTCA 57.107 36.364 16.34 0.00 0.00 4.26
278 282 7.275888 AGTCTTGTTGATCATGCTGTAAAAA 57.724 32.000 0.00 0.00 0.00 1.94
279 283 6.882610 AGTCTTGTTGATCATGCTGTAAAA 57.117 33.333 0.00 0.00 0.00 1.52
280 284 6.882610 AAGTCTTGTTGATCATGCTGTAAA 57.117 33.333 0.00 0.00 0.00 2.01
281 285 6.072508 GGAAAGTCTTGTTGATCATGCTGTAA 60.073 38.462 0.00 0.00 0.00 2.41
282 286 5.412594 GGAAAGTCTTGTTGATCATGCTGTA 59.587 40.000 0.00 0.00 0.00 2.74
283 287 4.217118 GGAAAGTCTTGTTGATCATGCTGT 59.783 41.667 0.00 0.00 0.00 4.40
284 288 4.380233 GGGAAAGTCTTGTTGATCATGCTG 60.380 45.833 0.00 0.00 0.00 4.41
285 289 3.760684 GGGAAAGTCTTGTTGATCATGCT 59.239 43.478 0.00 0.00 0.00 3.79
286 290 3.119352 GGGGAAAGTCTTGTTGATCATGC 60.119 47.826 0.00 0.00 0.00 4.06
287 291 4.081406 TGGGGAAAGTCTTGTTGATCATG 58.919 43.478 0.00 0.00 0.00 3.07
288 292 4.387026 TGGGGAAAGTCTTGTTGATCAT 57.613 40.909 0.00 0.00 0.00 2.45
289 293 3.874383 TGGGGAAAGTCTTGTTGATCA 57.126 42.857 0.00 0.00 0.00 2.92
290 294 4.082125 ACATGGGGAAAGTCTTGTTGATC 58.918 43.478 0.00 0.00 0.00 2.92
291 295 4.082125 GACATGGGGAAAGTCTTGTTGAT 58.918 43.478 0.00 0.00 0.00 2.57
292 296 3.138283 AGACATGGGGAAAGTCTTGTTGA 59.862 43.478 0.00 0.00 39.45 3.18
293 297 3.490348 AGACATGGGGAAAGTCTTGTTG 58.510 45.455 0.00 0.00 39.45 3.33
294 298 3.884037 AGACATGGGGAAAGTCTTGTT 57.116 42.857 0.00 0.00 39.45 2.83
298 302 1.636003 GGGAAGACATGGGGAAAGTCT 59.364 52.381 0.00 0.00 43.98 3.24
299 303 1.354368 TGGGAAGACATGGGGAAAGTC 59.646 52.381 0.00 0.00 0.00 3.01
300 304 1.455822 TGGGAAGACATGGGGAAAGT 58.544 50.000 0.00 0.00 0.00 2.66
301 305 2.603075 TTGGGAAGACATGGGGAAAG 57.397 50.000 0.00 0.00 0.00 2.62
302 306 2.492567 CCTTTGGGAAGACATGGGGAAA 60.493 50.000 0.00 0.00 34.71 3.13
303 307 1.077005 CCTTTGGGAAGACATGGGGAA 59.923 52.381 0.00 0.00 34.71 3.97
304 308 0.704076 CCTTTGGGAAGACATGGGGA 59.296 55.000 0.00 0.00 34.71 4.81
305 309 0.409484 ACCTTTGGGAAGACATGGGG 59.591 55.000 0.00 0.00 34.71 4.96
306 310 2.171003 GAACCTTTGGGAAGACATGGG 58.829 52.381 0.00 0.00 34.71 4.00
307 311 3.160679 AGAACCTTTGGGAAGACATGG 57.839 47.619 0.00 0.00 34.71 3.66
308 312 4.911390 AGTAGAACCTTTGGGAAGACATG 58.089 43.478 0.00 0.00 34.71 3.21
309 313 5.316987 CAAGTAGAACCTTTGGGAAGACAT 58.683 41.667 0.00 0.00 34.71 3.06
310 314 4.445735 CCAAGTAGAACCTTTGGGAAGACA 60.446 45.833 0.00 0.00 38.12 3.41
311 315 4.072839 CCAAGTAGAACCTTTGGGAAGAC 58.927 47.826 0.00 0.00 38.12 3.01
312 316 3.497942 GCCAAGTAGAACCTTTGGGAAGA 60.498 47.826 4.82 0.00 41.28 2.87
313 317 2.820197 GCCAAGTAGAACCTTTGGGAAG 59.180 50.000 4.82 0.00 41.28 3.46
314 318 2.175931 TGCCAAGTAGAACCTTTGGGAA 59.824 45.455 4.82 0.00 39.02 3.97
315 319 1.777878 TGCCAAGTAGAACCTTTGGGA 59.222 47.619 4.82 0.00 41.28 4.37
316 320 1.886542 GTGCCAAGTAGAACCTTTGGG 59.113 52.381 4.82 0.00 41.28 4.12
317 321 2.582052 TGTGCCAAGTAGAACCTTTGG 58.418 47.619 0.00 0.00 43.31 3.28
318 322 4.142271 TGTTTGTGCCAAGTAGAACCTTTG 60.142 41.667 0.00 0.00 0.00 2.77
319 323 4.020543 TGTTTGTGCCAAGTAGAACCTTT 58.979 39.130 0.00 0.00 0.00 3.11
320 324 3.380320 GTGTTTGTGCCAAGTAGAACCTT 59.620 43.478 0.00 0.00 0.00 3.50
321 325 2.949644 GTGTTTGTGCCAAGTAGAACCT 59.050 45.455 0.00 0.00 0.00 3.50
322 326 2.949644 AGTGTTTGTGCCAAGTAGAACC 59.050 45.455 0.00 0.00 0.00 3.62
323 327 5.744666 TTAGTGTTTGTGCCAAGTAGAAC 57.255 39.130 0.00 0.00 0.00 3.01
324 328 6.952773 AATTAGTGTTTGTGCCAAGTAGAA 57.047 33.333 0.00 0.00 0.00 2.10
325 329 8.453238 TTTAATTAGTGTTTGTGCCAAGTAGA 57.547 30.769 0.00 0.00 0.00 2.59
326 330 9.180678 CTTTTAATTAGTGTTTGTGCCAAGTAG 57.819 33.333 0.00 0.00 0.00 2.57
327 331 7.650104 GCTTTTAATTAGTGTTTGTGCCAAGTA 59.350 33.333 0.00 0.00 0.00 2.24
328 332 6.478673 GCTTTTAATTAGTGTTTGTGCCAAGT 59.521 34.615 0.00 0.00 0.00 3.16
329 333 6.478344 TGCTTTTAATTAGTGTTTGTGCCAAG 59.522 34.615 0.00 0.00 0.00 3.61
330 334 6.341316 TGCTTTTAATTAGTGTTTGTGCCAA 58.659 32.000 0.00 0.00 0.00 4.52
331 335 5.907207 TGCTTTTAATTAGTGTTTGTGCCA 58.093 33.333 0.00 0.00 0.00 4.92
332 336 8.527567 TTATGCTTTTAATTAGTGTTTGTGCC 57.472 30.769 0.00 0.00 0.00 5.01
350 354 8.686334 CCTATGTTTAGATGTGGTTTTATGCTT 58.314 33.333 0.00 0.00 0.00 3.91
351 355 7.201821 GCCTATGTTTAGATGTGGTTTTATGCT 60.202 37.037 0.00 0.00 0.00 3.79
352 356 6.918022 GCCTATGTTTAGATGTGGTTTTATGC 59.082 38.462 0.00 0.00 0.00 3.14
353 357 8.225603 AGCCTATGTTTAGATGTGGTTTTATG 57.774 34.615 0.00 0.00 0.00 1.90
354 358 9.561069 CTAGCCTATGTTTAGATGTGGTTTTAT 57.439 33.333 0.00 0.00 0.00 1.40
355 359 8.764558 TCTAGCCTATGTTTAGATGTGGTTTTA 58.235 33.333 0.00 0.00 0.00 1.52
356 360 7.630082 TCTAGCCTATGTTTAGATGTGGTTTT 58.370 34.615 0.00 0.00 0.00 2.43
357 361 7.195374 TCTAGCCTATGTTTAGATGTGGTTT 57.805 36.000 0.00 0.00 0.00 3.27
358 362 6.808321 TCTAGCCTATGTTTAGATGTGGTT 57.192 37.500 0.00 0.00 0.00 3.67
359 363 6.554982 TCATCTAGCCTATGTTTAGATGTGGT 59.445 38.462 16.10 0.00 45.53 4.16
360 364 6.997655 TCATCTAGCCTATGTTTAGATGTGG 58.002 40.000 16.10 0.00 45.53 4.17
361 365 9.499479 AATTCATCTAGCCTATGTTTAGATGTG 57.501 33.333 16.10 0.00 45.53 3.21
391 395 9.959749 CTTGCTTTTTGTTCCTGTTTAGTAATA 57.040 29.630 0.00 0.00 0.00 0.98
392 396 7.926018 CCTTGCTTTTTGTTCCTGTTTAGTAAT 59.074 33.333 0.00 0.00 0.00 1.89
393 397 7.122948 TCCTTGCTTTTTGTTCCTGTTTAGTAA 59.877 33.333 0.00 0.00 0.00 2.24
394 398 6.603997 TCCTTGCTTTTTGTTCCTGTTTAGTA 59.396 34.615 0.00 0.00 0.00 1.82
395 399 5.420739 TCCTTGCTTTTTGTTCCTGTTTAGT 59.579 36.000 0.00 0.00 0.00 2.24
396 400 5.901552 TCCTTGCTTTTTGTTCCTGTTTAG 58.098 37.500 0.00 0.00 0.00 1.85
397 401 5.923733 TCCTTGCTTTTTGTTCCTGTTTA 57.076 34.783 0.00 0.00 0.00 2.01
398 402 4.817318 TCCTTGCTTTTTGTTCCTGTTT 57.183 36.364 0.00 0.00 0.00 2.83
399 403 4.817318 TTCCTTGCTTTTTGTTCCTGTT 57.183 36.364 0.00 0.00 0.00 3.16
400 404 6.478512 TTATTCCTTGCTTTTTGTTCCTGT 57.521 33.333 0.00 0.00 0.00 4.00
401 405 7.784633 TTTTATTCCTTGCTTTTTGTTCCTG 57.215 32.000 0.00 0.00 0.00 3.86
402 406 8.978874 ATTTTTATTCCTTGCTTTTTGTTCCT 57.021 26.923 0.00 0.00 0.00 3.36
411 415 9.806448 ACCCAATTTTATTTTTATTCCTTGCTT 57.194 25.926 0.00 0.00 0.00 3.91
412 416 9.806448 AACCCAATTTTATTTTTATTCCTTGCT 57.194 25.926 0.00 0.00 0.00 3.91
413 417 9.838975 CAACCCAATTTTATTTTTATTCCTTGC 57.161 29.630 0.00 0.00 0.00 4.01
414 418 9.838975 GCAACCCAATTTTATTTTTATTCCTTG 57.161 29.630 0.00 0.00 0.00 3.61
415 419 9.019656 GGCAACCCAATTTTATTTTTATTCCTT 57.980 29.630 0.00 0.00 0.00 3.36
416 420 8.390143 AGGCAACCCAATTTTATTTTTATTCCT 58.610 29.630 0.00 0.00 37.17 3.36
417 421 8.574251 AGGCAACCCAATTTTATTTTTATTCC 57.426 30.769 0.00 0.00 37.17 3.01
418 422 8.673711 GGAGGCAACCCAATTTTATTTTTATTC 58.326 33.333 0.00 0.00 37.17 1.75
419 423 8.574251 GGAGGCAACCCAATTTTATTTTTATT 57.426 30.769 0.00 0.00 37.17 1.40
435 439 2.919494 CGCTTGTTGGGAGGCAACC 61.919 63.158 0.00 0.00 37.17 3.77
436 440 2.644992 CGCTTGTTGGGAGGCAAC 59.355 61.111 0.00 0.00 0.00 4.17
437 441 2.404566 TAGCGCTTGTTGGGAGGCAA 62.405 55.000 18.68 0.00 0.00 4.52
438 442 2.196997 ATAGCGCTTGTTGGGAGGCA 62.197 55.000 18.68 0.00 0.00 4.75
439 443 1.440145 GATAGCGCTTGTTGGGAGGC 61.440 60.000 18.68 0.00 0.00 4.70
440 444 1.154205 CGATAGCGCTTGTTGGGAGG 61.154 60.000 18.68 0.00 0.00 4.30
441 445 0.460284 ACGATAGCGCTTGTTGGGAG 60.460 55.000 18.68 1.34 42.48 4.30
442 446 0.036765 AACGATAGCGCTTGTTGGGA 60.037 50.000 18.68 0.00 42.48 4.37
443 447 0.802494 AAACGATAGCGCTTGTTGGG 59.198 50.000 18.68 1.82 42.48 4.12
444 448 3.413558 GTTAAACGATAGCGCTTGTTGG 58.586 45.455 18.68 5.13 42.48 3.77
445 449 3.081445 CGTTAAACGATAGCGCTTGTTG 58.919 45.455 18.68 11.82 46.05 3.33
446 450 2.473376 GCGTTAAACGATAGCGCTTGTT 60.473 45.455 18.68 15.85 46.05 2.83
447 451 1.060122 GCGTTAAACGATAGCGCTTGT 59.940 47.619 18.68 9.82 46.05 3.16
448 452 1.591394 GGCGTTAAACGATAGCGCTTG 60.591 52.381 18.68 9.06 46.05 4.01
449 453 0.648958 GGCGTTAAACGATAGCGCTT 59.351 50.000 18.68 2.89 46.05 4.68
450 454 1.149964 GGGCGTTAAACGATAGCGCT 61.150 55.000 17.26 17.26 46.05 5.92
451 455 1.274770 GGGCGTTAAACGATAGCGC 59.725 57.895 19.47 19.47 46.05 5.92
452 456 0.529119 AGGGGCGTTAAACGATAGCG 60.529 55.000 0.00 0.00 46.05 4.26
453 457 2.401351 CTAGGGGCGTTAAACGATAGC 58.599 52.381 0.00 0.00 46.05 2.97
454 458 2.035576 AGCTAGGGGCGTTAAACGATAG 59.964 50.000 0.00 0.00 46.05 2.08
455 459 2.034124 AGCTAGGGGCGTTAAACGATA 58.966 47.619 0.00 0.00 46.05 2.92
456 460 0.828677 AGCTAGGGGCGTTAAACGAT 59.171 50.000 0.00 0.00 46.05 3.73
457 461 1.406539 CTAGCTAGGGGCGTTAAACGA 59.593 52.381 13.32 0.00 46.05 3.85
467 471 1.649321 TCATCATGCCTAGCTAGGGG 58.351 55.000 35.44 17.24 43.82 4.79
468 472 3.996921 AATCATCATGCCTAGCTAGGG 57.003 47.619 35.44 21.87 43.82 3.53
469 473 4.903054 TGAAATCATCATGCCTAGCTAGG 58.097 43.478 32.12 32.12 38.72 3.02
470 474 6.653740 TCATTGAAATCATCATGCCTAGCTAG 59.346 38.462 14.20 14.20 38.03 3.42
471 475 6.536447 TCATTGAAATCATCATGCCTAGCTA 58.464 36.000 0.00 0.00 38.03 3.32
472 476 5.382616 TCATTGAAATCATCATGCCTAGCT 58.617 37.500 0.00 0.00 38.03 3.32
473 477 5.700722 TCATTGAAATCATCATGCCTAGC 57.299 39.130 0.00 0.00 38.03 3.42
474 478 6.071896 AGCATCATTGAAATCATCATGCCTAG 60.072 38.462 13.74 0.00 39.89 3.02
475 479 5.773176 AGCATCATTGAAATCATCATGCCTA 59.227 36.000 13.74 0.00 39.89 3.93
476 480 4.588951 AGCATCATTGAAATCATCATGCCT 59.411 37.500 13.74 4.42 39.89 4.75
477 481 4.883083 AGCATCATTGAAATCATCATGCC 58.117 39.130 13.74 2.93 39.89 4.40
478 482 5.528870 TGAGCATCATTGAAATCATCATGC 58.471 37.500 11.13 11.13 42.56 4.06
512 516 9.017509 TGATGCTCTCTTTATGTTTCAATTCTT 57.982 29.630 0.00 0.00 0.00 2.52
513 517 8.571461 TGATGCTCTCTTTATGTTTCAATTCT 57.429 30.769 0.00 0.00 0.00 2.40
514 518 9.234384 CATGATGCTCTCTTTATGTTTCAATTC 57.766 33.333 0.00 0.00 0.00 2.17
515 519 8.963725 TCATGATGCTCTCTTTATGTTTCAATT 58.036 29.630 0.00 0.00 0.00 2.32
516 520 8.515695 TCATGATGCTCTCTTTATGTTTCAAT 57.484 30.769 0.00 0.00 0.00 2.57
517 521 7.926674 TCATGATGCTCTCTTTATGTTTCAA 57.073 32.000 0.00 0.00 0.00 2.69
518 522 7.825761 TCTTCATGATGCTCTCTTTATGTTTCA 59.174 33.333 0.00 0.00 0.00 2.69
519 523 8.206325 TCTTCATGATGCTCTCTTTATGTTTC 57.794 34.615 0.00 0.00 0.00 2.78
520 524 8.571461 TTCTTCATGATGCTCTCTTTATGTTT 57.429 30.769 0.00 0.00 0.00 2.83
521 525 8.749026 ATTCTTCATGATGCTCTCTTTATGTT 57.251 30.769 0.00 0.00 0.00 2.71
529 533 9.086336 GCTAGTTATATTCTTCATGATGCTCTC 57.914 37.037 0.00 0.00 0.00 3.20
530 534 8.591940 TGCTAGTTATATTCTTCATGATGCTCT 58.408 33.333 0.00 0.00 0.00 4.09
531 535 8.655092 GTGCTAGTTATATTCTTCATGATGCTC 58.345 37.037 0.00 0.00 0.00 4.26
532 536 8.152898 TGTGCTAGTTATATTCTTCATGATGCT 58.847 33.333 0.00 0.00 0.00 3.79
533 537 8.315391 TGTGCTAGTTATATTCTTCATGATGC 57.685 34.615 0.00 0.00 0.00 3.91
547 551 8.545472 TGGGTTAGACTTAAATGTGCTAGTTAT 58.455 33.333 0.00 0.00 0.00 1.89
548 552 7.820872 GTGGGTTAGACTTAAATGTGCTAGTTA 59.179 37.037 0.00 0.00 0.00 2.24
549 553 6.653740 GTGGGTTAGACTTAAATGTGCTAGTT 59.346 38.462 0.00 0.00 0.00 2.24
550 554 6.013639 AGTGGGTTAGACTTAAATGTGCTAGT 60.014 38.462 0.00 0.00 0.00 2.57
551 555 6.407202 AGTGGGTTAGACTTAAATGTGCTAG 58.593 40.000 0.00 0.00 0.00 3.42
552 556 6.368779 AGTGGGTTAGACTTAAATGTGCTA 57.631 37.500 0.00 0.00 0.00 3.49
553 557 5.242795 AGTGGGTTAGACTTAAATGTGCT 57.757 39.130 0.00 0.00 0.00 4.40
554 558 5.106277 GGAAGTGGGTTAGACTTAAATGTGC 60.106 44.000 0.00 0.00 33.71 4.57
555 559 6.238648 AGGAAGTGGGTTAGACTTAAATGTG 58.761 40.000 0.00 0.00 33.71 3.21
556 560 6.449830 AGGAAGTGGGTTAGACTTAAATGT 57.550 37.500 0.00 0.00 33.71 2.71
557 561 7.012421 GCATAGGAAGTGGGTTAGACTTAAATG 59.988 40.741 0.00 0.00 33.71 2.32
558 562 7.054751 GCATAGGAAGTGGGTTAGACTTAAAT 58.945 38.462 0.00 0.00 33.71 1.40
559 563 6.013206 TGCATAGGAAGTGGGTTAGACTTAAA 60.013 38.462 0.00 0.00 33.71 1.52
560 564 5.486063 TGCATAGGAAGTGGGTTAGACTTAA 59.514 40.000 0.00 0.00 33.71 1.85
561 565 5.027460 TGCATAGGAAGTGGGTTAGACTTA 58.973 41.667 0.00 0.00 33.71 2.24
562 566 3.844211 TGCATAGGAAGTGGGTTAGACTT 59.156 43.478 0.00 0.00 36.33 3.01
563 567 3.450904 TGCATAGGAAGTGGGTTAGACT 58.549 45.455 0.00 0.00 0.00 3.24
564 568 3.906720 TGCATAGGAAGTGGGTTAGAC 57.093 47.619 0.00 0.00 0.00 2.59
565 569 5.808366 CTATGCATAGGAAGTGGGTTAGA 57.192 43.478 23.70 0.00 0.00 2.10
576 580 9.708066 TTGCTCACAAAATCCCTATGCATAGGA 62.708 40.741 42.12 30.58 41.70 2.94
577 581 7.637743 TTGCTCACAAAATCCCTATGCATAGG 61.638 42.308 36.50 36.50 40.27 2.57
578 582 4.823442 TGCTCACAAAATCCCTATGCATAG 59.177 41.667 24.33 24.33 0.00 2.23
579 583 4.790937 TGCTCACAAAATCCCTATGCATA 58.209 39.130 6.20 6.20 0.00 3.14
580 584 3.634504 TGCTCACAAAATCCCTATGCAT 58.365 40.909 3.79 3.79 0.00 3.96
581 585 3.084536 TGCTCACAAAATCCCTATGCA 57.915 42.857 0.00 0.00 0.00 3.96
582 586 4.176271 GTTTGCTCACAAAATCCCTATGC 58.824 43.478 0.00 0.00 46.94 3.14
583 587 5.389859 TGTTTGCTCACAAAATCCCTATG 57.610 39.130 0.00 0.00 46.94 2.23
584 588 5.539955 AGTTGTTTGCTCACAAAATCCCTAT 59.460 36.000 3.21 0.00 46.94 2.57
585 589 4.892934 AGTTGTTTGCTCACAAAATCCCTA 59.107 37.500 3.21 0.00 46.94 3.53
586 590 3.706086 AGTTGTTTGCTCACAAAATCCCT 59.294 39.130 3.21 0.00 46.94 4.20
587 591 4.058721 AGTTGTTTGCTCACAAAATCCC 57.941 40.909 3.21 0.00 46.94 3.85
588 592 6.146021 CCATAAGTTGTTTGCTCACAAAATCC 59.854 38.462 3.21 0.00 46.94 3.01
589 593 6.146021 CCCATAAGTTGTTTGCTCACAAAATC 59.854 38.462 3.21 0.00 46.94 2.17
590 594 5.990996 CCCATAAGTTGTTTGCTCACAAAAT 59.009 36.000 3.21 0.00 46.94 1.82
591 595 5.127845 TCCCATAAGTTGTTTGCTCACAAAA 59.872 36.000 3.21 0.00 46.94 2.44
592 596 4.646945 TCCCATAAGTTGTTTGCTCACAAA 59.353 37.500 3.21 0.00 43.45 2.83
593 597 4.211125 TCCCATAAGTTGTTTGCTCACAA 58.789 39.130 0.00 0.00 34.15 3.33
594 598 3.826524 TCCCATAAGTTGTTTGCTCACA 58.173 40.909 0.00 0.00 0.00 3.58
595 599 4.037446 TGTTCCCATAAGTTGTTTGCTCAC 59.963 41.667 0.00 0.00 0.00 3.51
596 600 4.211125 TGTTCCCATAAGTTGTTTGCTCA 58.789 39.130 0.00 0.00 0.00 4.26
597 601 4.846779 TGTTCCCATAAGTTGTTTGCTC 57.153 40.909 0.00 0.00 0.00 4.26
598 602 4.892934 TCTTGTTCCCATAAGTTGTTTGCT 59.107 37.500 0.00 0.00 0.00 3.91
599 603 5.195001 TCTTGTTCCCATAAGTTGTTTGC 57.805 39.130 0.00 0.00 0.00 3.68
600 604 7.432869 TGATTCTTGTTCCCATAAGTTGTTTG 58.567 34.615 0.00 0.00 0.00 2.93
601 605 7.595819 TGATTCTTGTTCCCATAAGTTGTTT 57.404 32.000 0.00 0.00 0.00 2.83
602 606 7.287696 AGTTGATTCTTGTTCCCATAAGTTGTT 59.712 33.333 0.00 0.00 0.00 2.83
603 607 6.777580 AGTTGATTCTTGTTCCCATAAGTTGT 59.222 34.615 0.00 0.00 0.00 3.32
604 608 7.219484 AGTTGATTCTTGTTCCCATAAGTTG 57.781 36.000 0.00 0.00 0.00 3.16
605 609 7.661040 CAAGTTGATTCTTGTTCCCATAAGTT 58.339 34.615 0.00 0.00 39.66 2.66
606 610 6.294731 GCAAGTTGATTCTTGTTCCCATAAGT 60.295 38.462 7.16 0.00 44.41 2.24
607 611 6.095377 GCAAGTTGATTCTTGTTCCCATAAG 58.905 40.000 7.16 0.00 44.41 1.73
608 612 5.538053 TGCAAGTTGATTCTTGTTCCCATAA 59.462 36.000 7.16 0.00 44.41 1.90
609 613 5.076182 TGCAAGTTGATTCTTGTTCCCATA 58.924 37.500 7.16 0.00 44.41 2.74
610 614 3.896888 TGCAAGTTGATTCTTGTTCCCAT 59.103 39.130 7.16 0.00 44.41 4.00
611 615 3.295093 TGCAAGTTGATTCTTGTTCCCA 58.705 40.909 7.16 0.00 44.41 4.37
612 616 4.525912 ATGCAAGTTGATTCTTGTTCCC 57.474 40.909 7.16 0.00 44.41 3.97
613 617 7.147976 ACTTTATGCAAGTTGATTCTTGTTCC 58.852 34.615 7.16 0.00 43.89 3.62
614 618 9.677567 TTACTTTATGCAAGTTGATTCTTGTTC 57.322 29.630 7.16 0.00 43.89 3.18
619 623 9.143631 GCAATTTACTTTATGCAAGTTGATTCT 57.856 29.630 7.16 0.00 43.89 2.40
620 624 8.924691 TGCAATTTACTTTATGCAAGTTGATTC 58.075 29.630 7.16 0.00 43.89 2.52
621 625 8.830201 TGCAATTTACTTTATGCAAGTTGATT 57.170 26.923 7.16 0.00 43.89 2.57
629 633 6.980593 ACTTCTGTGCAATTTACTTTATGCA 58.019 32.000 0.00 0.00 45.75 3.96
630 634 7.484959 GGTACTTCTGTGCAATTTACTTTATGC 59.515 37.037 0.00 0.00 39.22 3.14
631 635 8.511321 TGGTACTTCTGTGCAATTTACTTTATG 58.489 33.333 0.00 0.00 0.00 1.90
632 636 8.512138 GTGGTACTTCTGTGCAATTTACTTTAT 58.488 33.333 0.00 0.00 0.00 1.40
633 637 7.499563 TGTGGTACTTCTGTGCAATTTACTTTA 59.500 33.333 0.00 0.00 0.00 1.85
634 638 6.320164 TGTGGTACTTCTGTGCAATTTACTTT 59.680 34.615 0.00 0.00 0.00 2.66
913 930 1.252175 AGAAGAACGCAGAGCAGAGA 58.748 50.000 0.00 0.00 0.00 3.10
988 1005 4.666253 AACCATGGCTGCGGCAGT 62.666 61.111 28.88 8.80 42.43 4.40
1953 1970 5.711698 ACCTTCCTGGAAAAATAACAAGGA 58.288 37.500 10.86 0.00 39.71 3.36
2447 2583 5.841957 ACTTTGTGAACTCTGCATTCTTT 57.158 34.783 0.00 0.00 0.00 2.52
3575 3712 2.434336 TGGTGGTAGACATACTGGATGC 59.566 50.000 0.00 0.00 39.39 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.