Multiple sequence alignment - TraesCS3A01G177000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G177000 chr3A 100.000 7795 0 0 1 7795 198844152 198836358 0.000000e+00 14395.0
1 TraesCS3A01G177000 chr3A 92.353 340 23 3 4705 5043 383693148 383693485 1.520000e-131 481.0
2 TraesCS3A01G177000 chr3A 91.558 154 10 1 6915 7068 198837071 198836921 7.930000e-50 209.0
3 TraesCS3A01G177000 chr3A 91.558 154 10 1 7082 7232 198837238 198837085 7.930000e-50 209.0
4 TraesCS3A01G177000 chr3B 97.851 2931 48 10 3996 6912 243808037 243810966 0.000000e+00 5049.0
5 TraesCS3A01G177000 chr3B 93.707 2177 78 16 859 3008 243797672 243799816 0.000000e+00 3206.0
6 TraesCS3A01G177000 chr3B 90.858 897 34 18 6914 7795 243811028 243811891 0.000000e+00 1158.0
7 TraesCS3A01G177000 chr3B 95.464 507 15 5 3235 3738 243799987 243800488 0.000000e+00 802.0
8 TraesCS3A01G177000 chr3B 90.395 354 30 2 139 490 243797040 243797391 5.510000e-126 462.0
9 TraesCS3A01G177000 chr3B 94.332 247 9 1 3723 3969 243807795 243808036 2.660000e-99 374.0
10 TraesCS3A01G177000 chr3B 87.619 315 25 6 523 836 243797385 243797686 3.460000e-93 353.0
11 TraesCS3A01G177000 chr3B 89.610 154 13 1 6915 7068 243811209 243811359 7.980000e-45 193.0
12 TraesCS3A01G177000 chr3B 89.189 148 13 1 7068 7212 243811015 243811162 1.730000e-41 182.0
13 TraesCS3A01G177000 chr3B 93.023 43 1 2 3733 3773 243807759 243807801 2.350000e-05 62.1
14 TraesCS3A01G177000 chr3D 94.316 1900 73 15 5041 6909 168585055 168586950 0.000000e+00 2878.0
15 TraesCS3A01G177000 chr3D 92.112 1255 52 27 859 2087 168582386 168583619 0.000000e+00 1725.0
16 TraesCS3A01G177000 chr3D 89.460 1167 74 21 3411 4538 168583615 168584771 0.000000e+00 1428.0
17 TraesCS3A01G177000 chr3D 94.426 897 31 5 6914 7795 168587015 168587907 0.000000e+00 1362.0
18 TraesCS3A01G177000 chr3D 87.149 677 49 11 139 807 168573198 168573844 0.000000e+00 734.0
19 TraesCS3A01G177000 chr3D 91.875 160 10 2 6909 7068 168587190 168587346 3.660000e-53 220.0
20 TraesCS3A01G177000 chr3D 90.541 148 11 1 7068 7212 168587002 168587149 7.980000e-45 193.0
21 TraesCS3A01G177000 chr2A 95.549 337 13 2 4707 5043 95604378 95604712 8.900000e-149 538.0
22 TraesCS3A01G177000 chr4D 94.277 332 17 2 4706 5037 304362207 304361878 2.510000e-139 507.0
23 TraesCS3A01G177000 chr7A 94.225 329 15 4 4716 5043 479837903 479838228 4.200000e-137 499.0
24 TraesCS3A01G177000 chr1A 93.939 330 19 1 4714 5043 62247545 62247217 1.510000e-136 497.0
25 TraesCS3A01G177000 chr5A 93.155 336 17 6 4717 5049 581490320 581490652 9.090000e-134 488.0
26 TraesCS3A01G177000 chr6B 93.578 327 20 1 4717 5043 4165535 4165210 3.270000e-133 486.0
27 TraesCS3A01G177000 chr4A 93.155 336 16 7 4717 5050 610429784 610430114 3.270000e-133 486.0
28 TraesCS3A01G177000 chr4A 85.204 196 29 0 183 378 595041563 595041368 1.330000e-47 202.0
29 TraesCS3A01G177000 chr4A 87.705 122 15 0 5897 6018 707065484 707065605 8.150000e-30 143.0
30 TraesCS3A01G177000 chr1B 87.903 124 14 1 5895 6018 157469796 157469918 2.270000e-30 145.0
31 TraesCS3A01G177000 chr2B 88.000 50 6 0 862 911 651367957 651368006 8.450000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G177000 chr3A 198836358 198844152 7794 True 14395.000000 14395 100.000000 1 7795 1 chr3A.!!$R1 7794
1 TraesCS3A01G177000 chr3B 243797040 243800488 3448 False 1205.750000 3206 91.796250 139 3738 4 chr3B.!!$F1 3599
2 TraesCS3A01G177000 chr3B 243807759 243811891 4132 False 1169.683333 5049 92.477167 3723 7795 6 chr3B.!!$F2 4072
3 TraesCS3A01G177000 chr3D 168582386 168587907 5521 False 1301.000000 2878 92.121667 859 7795 6 chr3D.!!$F2 6936
4 TraesCS3A01G177000 chr3D 168573198 168573844 646 False 734.000000 734 87.149000 139 807 1 chr3D.!!$F1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 855 0.030638 GTTCGCTTGCTTGCCTCAAA 59.969 50.000 0.00 0.00 0.00 2.69 F
955 970 0.305313 GAAGACTCCGTCGATCTCCG 59.695 60.000 0.00 0.00 37.67 4.63 F
2372 2415 0.032678 ACGAGAAGGCACACACAGAG 59.967 55.000 0.00 0.00 0.00 3.35 F
3020 3071 0.037326 CGTTCCCAGAGCTGCACTTA 60.037 55.000 1.02 0.00 0.00 2.24 F
3051 3102 0.108233 CCAGGAGAGCAGAGCTGTTC 60.108 60.000 6.26 6.26 39.88 3.18 F
3077 3128 0.242017 AAGCAGCGACCTTTCATTGC 59.758 50.000 0.00 0.00 33.13 3.56 F
3202 3255 0.684153 ACAAGGCCGGGATTGATTGG 60.684 55.000 16.47 0.00 0.00 3.16 F
4960 5205 1.133915 GTTGTGGTGGACCTTTCTCCA 60.134 52.381 0.00 0.00 38.05 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2352 2395 0.032130 TCTGTGTGTGCCTTCTCGTC 59.968 55.000 0.00 0.0 0.00 4.20 R
2641 2688 0.247814 GAACGAGCGATGCCACATTG 60.248 55.000 0.00 0.0 0.00 2.82 R
3189 3242 0.606401 CCGATCCCAATCAATCCCGG 60.606 60.000 0.00 0.0 31.76 5.73 R
4962 5207 2.756760 GCCACCTCATCATTCAACATGT 59.243 45.455 0.00 0.0 0.00 3.21 R
5153 5400 4.646492 AGCCCTTGATCAAACATATGGTTC 59.354 41.667 9.88 0.0 39.29 3.62 R
5336 5589 3.433306 ACCATTGCCAGCACTTTAGTA 57.567 42.857 0.00 0.0 0.00 1.82 R
5576 5829 3.620488 ACTGAGGAAGCACACTGAAAAA 58.380 40.909 0.00 0.0 0.00 1.94 R
7247 7598 1.002366 CTGCTATTCACACCGAGCAC 58.998 55.000 0.00 0.0 39.93 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.838286 GATCCAGCGATGGCATCTC 58.162 57.895 23.97 17.15 43.41 2.75
19 20 1.005275 ATCCAGCGATGGCATCTCG 60.005 57.895 23.97 15.41 43.41 4.04
20 21 1.752358 ATCCAGCGATGGCATCTCGT 61.752 55.000 23.97 6.60 43.41 4.18
22 23 2.026734 AGCGATGGCATCTCGTCG 59.973 61.111 23.97 13.94 45.73 5.12
23 24 3.032609 GCGATGGCATCTCGTCGG 61.033 66.667 23.97 9.38 43.87 4.79
24 25 2.413351 CGATGGCATCTCGTCGGT 59.587 61.111 23.97 0.00 41.07 4.69
25 26 1.946156 CGATGGCATCTCGTCGGTG 60.946 63.158 23.97 3.31 41.07 4.94
26 27 1.592669 GATGGCATCTCGTCGGTGG 60.593 63.158 20.08 0.00 0.00 4.61
27 28 2.298158 GATGGCATCTCGTCGGTGGT 62.298 60.000 20.08 0.00 0.00 4.16
28 29 1.040893 ATGGCATCTCGTCGGTGGTA 61.041 55.000 0.00 0.00 0.00 3.25
29 30 1.065928 GGCATCTCGTCGGTGGTAG 59.934 63.158 0.00 0.00 0.00 3.18
30 31 1.664321 GGCATCTCGTCGGTGGTAGT 61.664 60.000 0.00 0.00 0.00 2.73
31 32 1.019673 GCATCTCGTCGGTGGTAGTA 58.980 55.000 0.00 0.00 0.00 1.82
32 33 1.268437 GCATCTCGTCGGTGGTAGTAC 60.268 57.143 0.00 0.00 0.00 2.73
33 34 1.332997 CATCTCGTCGGTGGTAGTACC 59.667 57.143 12.80 12.80 39.22 3.34
34 35 0.615331 TCTCGTCGGTGGTAGTACCT 59.385 55.000 20.07 0.00 39.58 3.08
35 36 1.831106 TCTCGTCGGTGGTAGTACCTA 59.169 52.381 20.07 4.28 39.58 3.08
36 37 2.159043 TCTCGTCGGTGGTAGTACCTAG 60.159 54.545 20.07 11.09 39.58 3.02
38 39 1.028130 GTCGGTGGTAGTACCTAGCC 58.972 60.000 20.07 16.70 39.58 3.93
40 41 1.005805 TCGGTGGTAGTACCTAGCCAA 59.994 52.381 20.07 3.13 39.58 4.52
41 42 1.826720 CGGTGGTAGTACCTAGCCAAA 59.173 52.381 20.07 0.00 39.58 3.28
43 44 3.492137 CGGTGGTAGTACCTAGCCAAATC 60.492 52.174 20.07 0.00 39.58 2.17
44 45 3.181457 GGTGGTAGTACCTAGCCAAATCC 60.181 52.174 20.07 5.45 39.58 3.01
45 46 2.696707 TGGTAGTACCTAGCCAAATCCG 59.303 50.000 20.07 0.00 39.58 4.18
46 47 2.036862 GGTAGTACCTAGCCAAATCCGG 59.963 54.545 12.41 0.00 34.73 5.14
47 48 5.670422 GGTAGTACCTAGCCAAATCCGGC 62.670 56.522 12.41 0.00 43.37 6.13
68 69 4.324991 GGAGCGTTTCCGGGTGGT 62.325 66.667 0.00 0.00 35.91 4.16
69 70 2.281276 GAGCGTTTCCGGGTGGTT 60.281 61.111 0.00 0.00 36.30 3.67
70 71 2.593436 AGCGTTTCCGGGTGGTTG 60.593 61.111 0.00 0.00 36.30 3.77
71 72 2.903350 GCGTTTCCGGGTGGTTGT 60.903 61.111 0.00 0.00 36.30 3.32
72 73 3.027292 CGTTTCCGGGTGGTTGTG 58.973 61.111 0.00 0.00 36.30 3.33
73 74 2.725641 GTTTCCGGGTGGTTGTGC 59.274 61.111 0.00 0.00 36.30 4.57
74 75 1.826487 GTTTCCGGGTGGTTGTGCT 60.826 57.895 0.00 0.00 36.30 4.40
75 76 1.076632 TTTCCGGGTGGTTGTGCTT 60.077 52.632 0.00 0.00 36.30 3.91
76 77 1.388065 TTTCCGGGTGGTTGTGCTTG 61.388 55.000 0.00 0.00 36.30 4.01
77 78 3.294493 CCGGGTGGTTGTGCTTGG 61.294 66.667 0.00 0.00 0.00 3.61
78 79 3.977244 CGGGTGGTTGTGCTTGGC 61.977 66.667 0.00 0.00 0.00 4.52
79 80 3.615709 GGGTGGTTGTGCTTGGCC 61.616 66.667 0.00 0.00 0.00 5.36
80 81 2.837291 GGTGGTTGTGCTTGGCCA 60.837 61.111 0.00 0.00 0.00 5.36
81 82 2.730094 GTGGTTGTGCTTGGCCAG 59.270 61.111 5.11 1.08 0.00 4.85
82 83 1.827789 GTGGTTGTGCTTGGCCAGA 60.828 57.895 5.11 0.00 0.00 3.86
83 84 1.153524 TGGTTGTGCTTGGCCAGAT 59.846 52.632 5.11 0.00 0.00 2.90
84 85 0.895100 TGGTTGTGCTTGGCCAGATC 60.895 55.000 5.11 0.00 0.00 2.75
85 86 1.598701 GGTTGTGCTTGGCCAGATCC 61.599 60.000 5.11 0.00 0.00 3.36
86 87 1.675310 TTGTGCTTGGCCAGATCCG 60.675 57.895 5.11 0.00 0.00 4.18
87 88 2.825836 GTGCTTGGCCAGATCCGG 60.826 66.667 5.11 0.00 0.00 5.14
97 98 1.586422 CCAGATCCGGCAATAGTGTG 58.414 55.000 0.00 0.00 0.00 3.82
98 99 1.586422 CAGATCCGGCAATAGTGTGG 58.414 55.000 0.00 0.00 0.00 4.17
99 100 0.179045 AGATCCGGCAATAGTGTGGC 60.179 55.000 0.00 0.00 40.55 5.01
100 101 0.463654 GATCCGGCAATAGTGTGGCA 60.464 55.000 0.00 0.00 44.02 4.92
101 102 0.464373 ATCCGGCAATAGTGTGGCAG 60.464 55.000 0.00 0.00 44.02 4.85
102 103 2.764314 CCGGCAATAGTGTGGCAGC 61.764 63.158 0.00 0.00 44.02 5.25
103 104 2.764314 CGGCAATAGTGTGGCAGCC 61.764 63.158 3.66 3.66 44.02 4.85
104 105 1.678635 GGCAATAGTGTGGCAGCCA 60.679 57.895 11.22 11.22 43.33 4.75
105 106 1.039233 GGCAATAGTGTGGCAGCCAT 61.039 55.000 19.75 3.94 43.33 4.40
106 107 0.383231 GCAATAGTGTGGCAGCCATC 59.617 55.000 19.75 14.19 35.28 3.51
107 108 0.659427 CAATAGTGTGGCAGCCATCG 59.341 55.000 19.75 0.00 35.28 3.84
108 109 0.464373 AATAGTGTGGCAGCCATCGG 60.464 55.000 19.75 0.00 35.28 4.18
109 110 1.626356 ATAGTGTGGCAGCCATCGGT 61.626 55.000 19.75 5.58 35.28 4.69
110 111 2.238847 TAGTGTGGCAGCCATCGGTC 62.239 60.000 19.75 4.49 35.28 4.79
111 112 4.758251 TGTGGCAGCCATCGGTCG 62.758 66.667 19.75 0.00 35.28 4.79
115 116 3.643978 GCAGCCATCGGTCGCATC 61.644 66.667 0.00 0.00 0.00 3.91
116 117 2.969238 CAGCCATCGGTCGCATCC 60.969 66.667 0.00 0.00 0.00 3.51
134 135 2.680352 GGGGACGAGGAGTGCAGA 60.680 66.667 0.00 0.00 43.57 4.26
135 136 2.574399 GGGACGAGGAGTGCAGAC 59.426 66.667 0.00 0.00 43.57 3.51
136 137 2.179517 GGACGAGGAGTGCAGACG 59.820 66.667 0.00 0.00 41.21 4.18
137 138 2.505118 GACGAGGAGTGCAGACGC 60.505 66.667 0.00 0.00 39.24 5.19
223 226 4.081087 GTCTAGTCTGCAACAATCCCCTTA 60.081 45.833 0.00 0.00 0.00 2.69
229 232 1.748493 GCAACAATCCCCTTATTGCGA 59.252 47.619 0.00 0.00 39.93 5.10
276 279 3.261580 GTTGCAAACCTGAAATATGGGC 58.738 45.455 0.00 0.00 42.21 5.36
280 283 3.954258 GCAAACCTGAAATATGGGCTAGT 59.046 43.478 0.00 0.00 0.00 2.57
354 357 0.687354 ACGTGCCCAGAAAGATCAGT 59.313 50.000 0.00 0.00 0.00 3.41
375 378 3.746492 GTCGGCTGACTACAAACATTTCT 59.254 43.478 18.76 0.00 42.08 2.52
402 411 7.825331 TTGTACAATGTCTATTTTTGGGTGA 57.175 32.000 3.59 0.00 0.00 4.02
429 438 5.627499 TTGTGCTATGTCTTTGAACCATC 57.373 39.130 0.00 0.00 0.00 3.51
430 439 4.009675 TGTGCTATGTCTTTGAACCATCC 58.990 43.478 0.00 0.00 0.00 3.51
456 465 7.269084 CGGACGATGATTATGCATTGTAATTTC 59.731 37.037 3.54 0.22 41.72 2.17
520 529 3.134623 TCGTGAATCAGTCATTGCCCTAT 59.865 43.478 0.00 0.00 38.90 2.57
555 564 0.881118 CATTACAACGCAGGGCAACT 59.119 50.000 0.00 0.00 0.00 3.16
556 565 2.080693 CATTACAACGCAGGGCAACTA 58.919 47.619 0.00 0.00 0.00 2.24
557 566 2.483014 TTACAACGCAGGGCAACTAT 57.517 45.000 0.00 0.00 0.00 2.12
558 567 2.483014 TACAACGCAGGGCAACTATT 57.517 45.000 0.00 0.00 0.00 1.73
559 568 2.483014 ACAACGCAGGGCAACTATTA 57.517 45.000 0.00 0.00 0.00 0.98
637 647 1.735198 CTTAGCCGGCGAACGTTCA 60.735 57.895 26.71 3.60 42.24 3.18
640 650 1.585267 TAGCCGGCGAACGTTCACTA 61.585 55.000 26.71 15.84 42.24 2.74
672 682 5.215160 GGCATTTATGAACGCTTTAGATGG 58.785 41.667 0.00 0.00 0.00 3.51
699 709 1.544724 TGTATGGGTTGGCAGCTTTC 58.455 50.000 0.24 0.00 0.00 2.62
703 713 0.112995 TGGGTTGGCAGCTTTCTCAT 59.887 50.000 0.24 0.00 0.00 2.90
706 716 2.825532 GGGTTGGCAGCTTTCTCATAAA 59.174 45.455 0.24 0.00 0.00 1.40
780 790 6.422776 TTCTTCTAGAAAAATGCCATCGTC 57.577 37.500 6.63 0.00 29.99 4.20
785 795 3.334691 AGAAAAATGCCATCGTCGAGAA 58.665 40.909 0.00 0.00 0.00 2.87
796 806 4.142816 CCATCGTCGAGAAAAGAGCATTTT 60.143 41.667 0.00 0.00 0.00 1.82
797 807 5.385617 CATCGTCGAGAAAAGAGCATTTTT 58.614 37.500 0.00 0.21 33.19 1.94
798 808 5.018695 TCGTCGAGAAAAGAGCATTTTTC 57.981 39.130 14.38 14.38 43.88 2.29
836 846 0.790814 GTAAAGAGCGTTCGCTTGCT 59.209 50.000 20.26 11.27 45.90 3.91
837 847 1.194772 GTAAAGAGCGTTCGCTTGCTT 59.805 47.619 20.26 16.10 42.60 3.91
838 848 0.040958 AAAGAGCGTTCGCTTGCTTG 60.041 50.000 20.26 0.00 42.60 4.01
843 853 2.606961 CGTTCGCTTGCTTGCCTCA 61.607 57.895 0.00 0.00 0.00 3.86
844 854 1.654220 GTTCGCTTGCTTGCCTCAA 59.346 52.632 0.00 0.00 0.00 3.02
845 855 0.030638 GTTCGCTTGCTTGCCTCAAA 59.969 50.000 0.00 0.00 0.00 2.69
846 856 0.743688 TTCGCTTGCTTGCCTCAAAA 59.256 45.000 0.00 0.00 0.00 2.44
847 857 0.743688 TCGCTTGCTTGCCTCAAAAA 59.256 45.000 0.00 0.00 0.00 1.94
907 917 2.412089 GCTGACATTCGCCGGATAATAC 59.588 50.000 5.05 2.48 0.00 1.89
911 921 6.032956 TGACATTCGCCGGATAATACTATT 57.967 37.500 5.05 0.00 0.00 1.73
912 922 7.160547 TGACATTCGCCGGATAATACTATTA 57.839 36.000 5.05 0.00 0.00 0.98
913 923 7.031372 TGACATTCGCCGGATAATACTATTAC 58.969 38.462 5.05 0.00 0.00 1.89
914 924 6.335777 ACATTCGCCGGATAATACTATTACC 58.664 40.000 5.05 0.00 0.00 2.85
915 925 4.621068 TCGCCGGATAATACTATTACCG 57.379 45.455 5.05 15.72 40.03 4.02
916 926 4.260985 TCGCCGGATAATACTATTACCGA 58.739 43.478 5.05 0.00 42.40 4.69
917 927 4.333649 TCGCCGGATAATACTATTACCGAG 59.666 45.833 5.05 16.04 42.40 4.63
918 928 4.333649 CGCCGGATAATACTATTACCGAGA 59.666 45.833 5.05 0.00 42.40 4.04
919 929 5.163723 CGCCGGATAATACTATTACCGAGAA 60.164 44.000 5.05 0.00 42.40 2.87
920 930 6.459298 CGCCGGATAATACTATTACCGAGAAT 60.459 42.308 5.05 0.00 42.40 2.40
921 931 7.263496 GCCGGATAATACTATTACCGAGAATT 58.737 38.462 5.05 0.00 42.40 2.17
922 932 8.408601 GCCGGATAATACTATTACCGAGAATTA 58.591 37.037 5.05 0.00 42.40 1.40
955 970 0.305313 GAAGACTCCGTCGATCTCCG 59.695 60.000 0.00 0.00 37.67 4.63
1079 1097 3.085533 CACTATGTATCCTCCTCCTCCG 58.914 54.545 0.00 0.00 0.00 4.63
1371 1389 1.141019 GAAGCGCATCCACTACCGA 59.859 57.895 11.47 0.00 0.00 4.69
1648 1673 8.326765 TGGCTTAGTTAGGAACCATAAATCTA 57.673 34.615 0.00 0.00 0.00 1.98
1649 1674 8.774183 TGGCTTAGTTAGGAACCATAAATCTAA 58.226 33.333 0.00 0.00 0.00 2.10
1723 1762 4.878439 TGTGTGTATGTGTACCACTCTTC 58.122 43.478 0.00 0.00 35.16 2.87
1778 1817 6.587273 AGGATTGGTTAGATTAGAAGACTGC 58.413 40.000 0.00 0.00 0.00 4.40
1782 1821 6.360370 TGGTTAGATTAGAAGACTGCTTGT 57.640 37.500 0.00 0.00 33.61 3.16
1791 1830 3.073650 AGAAGACTGCTTGTTGGGAGATT 59.926 43.478 0.00 0.00 33.61 2.40
1793 1832 1.815003 GACTGCTTGTTGGGAGATTGG 59.185 52.381 0.00 0.00 0.00 3.16
1796 1835 2.892852 CTGCTTGTTGGGAGATTGGAAA 59.107 45.455 0.00 0.00 0.00 3.13
1844 1883 4.260985 TGGTGTGTGGATGTGTTATCATC 58.739 43.478 0.00 0.00 42.20 2.92
1959 2001 7.704472 TGTGAAACTAAACTGGTTATTGCTTTG 59.296 33.333 0.00 0.00 38.04 2.77
1967 2009 7.582667 AACTGGTTATTGCTTTGTAGAGTTT 57.417 32.000 0.00 0.00 0.00 2.66
1968 2010 8.685838 AACTGGTTATTGCTTTGTAGAGTTTA 57.314 30.769 0.00 0.00 0.00 2.01
2109 2152 4.464597 TCACCCTAAATATTTTGGCACACC 59.535 41.667 19.63 0.00 39.29 4.16
2116 2159 2.146073 ATTTTGGCACACCGAGCAGC 62.146 55.000 0.00 0.00 39.29 5.25
2154 2197 5.591877 ACATCCCTATTTTGTGCTTGAGATC 59.408 40.000 0.00 0.00 0.00 2.75
2204 2247 7.718753 ACCAAATCAGAGATTGATAGGATTGAC 59.281 37.037 12.62 0.00 45.82 3.18
2211 2254 1.788229 TGATAGGATTGACAGCCCGA 58.212 50.000 0.00 0.00 0.00 5.14
2252 2295 3.297391 GGAGTGAATCCGATCTGGC 57.703 57.895 0.00 0.00 38.67 4.85
2311 2354 3.112709 GACGACCTGCTTGCCGTC 61.113 66.667 0.00 0.00 43.28 4.79
2320 2363 3.093278 CTTGCCGTCGATGCCTTC 58.907 61.111 0.00 0.00 0.00 3.46
2367 2410 0.388520 CGATGACGAGAAGGCACACA 60.389 55.000 0.00 0.00 43.31 3.72
2372 2415 0.032678 ACGAGAAGGCACACACAGAG 59.967 55.000 0.00 0.00 0.00 3.35
2377 2420 2.591715 GGCACACACAGAGCCGTT 60.592 61.111 0.00 0.00 44.11 4.44
2392 2435 2.251371 GTTCTTTGTGTCCGGCGC 59.749 61.111 0.00 0.00 0.00 6.53
2422 2469 1.281656 GGAGGTGGCAAAAACGACG 59.718 57.895 0.00 0.00 0.00 5.12
2427 2474 2.409651 GGCAAAAACGACGCCACA 59.590 55.556 0.00 0.00 45.52 4.17
2437 2484 3.302347 GACGCCACACCTCTGAGGG 62.302 68.421 26.56 17.48 40.58 4.30
2438 2485 3.314331 CGCCACACCTCTGAGGGT 61.314 66.667 26.56 18.09 40.58 4.34
2439 2486 2.665603 GCCACACCTCTGAGGGTC 59.334 66.667 26.56 8.11 40.58 4.46
2442 2489 0.611062 CCACACCTCTGAGGGTCGTA 60.611 60.000 26.56 0.00 40.58 3.43
2443 2490 0.811915 CACACCTCTGAGGGTCGTAG 59.188 60.000 26.56 11.63 40.58 3.51
2444 2491 0.323542 ACACCTCTGAGGGTCGTAGG 60.324 60.000 26.56 9.77 40.58 3.18
2445 2492 1.380112 ACCTCTGAGGGTCGTAGGC 60.380 63.158 26.56 0.00 40.58 3.93
2446 2493 1.379977 CCTCTGAGGGTCGTAGGCA 60.380 63.158 16.19 0.00 0.00 4.75
2447 2494 0.970937 CCTCTGAGGGTCGTAGGCAA 60.971 60.000 16.19 0.00 0.00 4.52
2448 2495 0.173708 CTCTGAGGGTCGTAGGCAAC 59.826 60.000 0.00 0.00 0.00 4.17
2449 2496 0.541063 TCTGAGGGTCGTAGGCAACA 60.541 55.000 0.00 0.00 41.41 3.33
2462 2509 2.406616 GCAACATCGCCGGGTTGAT 61.407 57.895 21.12 0.00 45.50 2.57
2522 2569 4.329545 GCAAGTGCCTCGACCCCA 62.330 66.667 0.00 0.00 34.31 4.96
2533 2580 2.501610 GACCCCAGCGAGGACATC 59.498 66.667 0.00 0.00 41.22 3.06
2552 2599 0.170561 CTCCCGTTCGATTCTCGTGT 59.829 55.000 0.00 0.00 41.35 4.49
2596 2643 7.109257 CGTTCGAATTTTCTCTTTATACGGAC 58.891 38.462 0.00 0.00 0.00 4.79
2641 2688 9.979270 CAATCTCTTATGTAGTTTTGTGATGTC 57.021 33.333 0.00 0.00 0.00 3.06
2680 2727 2.050691 CATTTTTCACGTTCCTTGCCG 58.949 47.619 0.00 0.00 0.00 5.69
2712 2759 1.135489 GTTGATGCTGCACATGTCTGG 60.135 52.381 3.57 0.00 39.84 3.86
2796 2843 1.188871 TGTCGACCAGTACCATGCCA 61.189 55.000 14.12 0.00 0.00 4.92
2876 2923 2.538058 GTCGCGACACACAACGAC 59.462 61.111 33.09 2.59 46.64 4.34
3008 3059 1.301623 CTGGCCATAACCGTTCCCA 59.698 57.895 5.51 0.00 0.00 4.37
3009 3060 0.748005 CTGGCCATAACCGTTCCCAG 60.748 60.000 5.51 0.00 34.54 4.45
3012 3063 1.095807 GCCATAACCGTTCCCAGAGC 61.096 60.000 0.00 0.00 0.00 4.09
3013 3064 0.541863 CCATAACCGTTCCCAGAGCT 59.458 55.000 0.00 0.00 0.00 4.09
3015 3066 0.107654 ATAACCGTTCCCAGAGCTGC 60.108 55.000 0.00 0.00 0.00 5.25
3016 3067 1.476845 TAACCGTTCCCAGAGCTGCA 61.477 55.000 1.02 0.00 0.00 4.41
3017 3068 2.743928 CCGTTCCCAGAGCTGCAC 60.744 66.667 1.02 0.00 0.00 4.57
3018 3069 2.345244 CGTTCCCAGAGCTGCACT 59.655 61.111 1.02 0.00 0.00 4.40
3019 3070 1.302033 CGTTCCCAGAGCTGCACTT 60.302 57.895 1.02 0.00 0.00 3.16
3020 3071 0.037326 CGTTCCCAGAGCTGCACTTA 60.037 55.000 1.02 0.00 0.00 2.24
3021 3072 1.443802 GTTCCCAGAGCTGCACTTAC 58.556 55.000 1.02 0.00 0.00 2.34
3022 3073 1.055849 TTCCCAGAGCTGCACTTACA 58.944 50.000 1.02 0.00 0.00 2.41
3023 3074 1.279496 TCCCAGAGCTGCACTTACAT 58.721 50.000 1.02 0.00 0.00 2.29
3024 3075 1.208052 TCCCAGAGCTGCACTTACATC 59.792 52.381 1.02 0.00 0.00 3.06
3025 3076 1.065926 CCCAGAGCTGCACTTACATCA 60.066 52.381 1.02 0.00 0.00 3.07
3026 3077 2.616256 CCCAGAGCTGCACTTACATCAA 60.616 50.000 1.02 0.00 0.00 2.57
3027 3078 2.417933 CCAGAGCTGCACTTACATCAAC 59.582 50.000 1.02 0.00 0.00 3.18
3028 3079 2.093310 CAGAGCTGCACTTACATCAACG 59.907 50.000 1.02 0.00 0.00 4.10
3029 3080 2.069273 GAGCTGCACTTACATCAACGT 58.931 47.619 1.02 0.00 0.00 3.99
3030 3081 2.069273 AGCTGCACTTACATCAACGTC 58.931 47.619 1.02 0.00 0.00 4.34
3031 3082 1.128692 GCTGCACTTACATCAACGTCC 59.871 52.381 0.00 0.00 0.00 4.79
3032 3083 1.732259 CTGCACTTACATCAACGTCCC 59.268 52.381 0.00 0.00 0.00 4.46
3033 3084 1.084289 GCACTTACATCAACGTCCCC 58.916 55.000 0.00 0.00 0.00 4.81
3034 3085 1.609580 GCACTTACATCAACGTCCCCA 60.610 52.381 0.00 0.00 0.00 4.96
3035 3086 2.346803 CACTTACATCAACGTCCCCAG 58.653 52.381 0.00 0.00 0.00 4.45
3036 3087 1.278127 ACTTACATCAACGTCCCCAGG 59.722 52.381 0.00 0.00 0.00 4.45
3037 3088 1.553248 CTTACATCAACGTCCCCAGGA 59.447 52.381 0.00 0.00 0.00 3.86
3038 3089 1.191535 TACATCAACGTCCCCAGGAG 58.808 55.000 0.00 0.00 29.39 3.69
3039 3090 0.544357 ACATCAACGTCCCCAGGAGA 60.544 55.000 0.00 0.00 29.39 3.71
3040 3091 0.176680 CATCAACGTCCCCAGGAGAG 59.823 60.000 0.00 0.00 29.39 3.20
3041 3092 1.617947 ATCAACGTCCCCAGGAGAGC 61.618 60.000 0.00 0.00 29.39 4.09
3042 3093 2.203788 AACGTCCCCAGGAGAGCA 60.204 61.111 0.00 0.00 29.39 4.26
3043 3094 2.286523 AACGTCCCCAGGAGAGCAG 61.287 63.158 0.00 0.00 29.39 4.24
3044 3095 2.363018 CGTCCCCAGGAGAGCAGA 60.363 66.667 0.00 0.00 29.39 4.26
3045 3096 2.422231 CGTCCCCAGGAGAGCAGAG 61.422 68.421 0.00 0.00 29.39 3.35
3046 3097 2.364842 TCCCCAGGAGAGCAGAGC 60.365 66.667 0.00 0.00 0.00 4.09
3047 3098 2.365370 CCCCAGGAGAGCAGAGCT 60.365 66.667 0.00 0.00 43.88 4.09
3048 3099 2.733669 CCCCAGGAGAGCAGAGCTG 61.734 68.421 0.00 0.00 39.88 4.24
3049 3100 1.988956 CCCAGGAGAGCAGAGCTGT 60.989 63.158 0.00 0.00 39.88 4.40
3050 3101 1.551908 CCCAGGAGAGCAGAGCTGTT 61.552 60.000 0.00 0.00 39.88 3.16
3051 3102 0.108233 CCAGGAGAGCAGAGCTGTTC 60.108 60.000 6.26 6.26 39.88 3.18
3057 3108 3.042871 AGAGCAGAGCTGTTCTTGAAG 57.957 47.619 10.54 0.00 46.70 3.02
3058 3109 2.632028 AGAGCAGAGCTGTTCTTGAAGA 59.368 45.455 10.54 0.00 46.70 2.87
3059 3110 3.070734 AGAGCAGAGCTGTTCTTGAAGAA 59.929 43.478 10.54 3.02 46.70 2.52
3060 3111 3.401182 AGCAGAGCTGTTCTTGAAGAAG 58.599 45.455 8.06 0.00 37.57 2.85
3061 3112 2.095819 GCAGAGCTGTTCTTGAAGAAGC 60.096 50.000 8.06 9.27 34.42 3.86
3062 3113 3.136763 CAGAGCTGTTCTTGAAGAAGCA 58.863 45.455 18.10 13.26 34.42 3.91
3063 3114 3.186817 CAGAGCTGTTCTTGAAGAAGCAG 59.813 47.826 22.05 22.05 34.42 4.24
3064 3115 1.878734 AGCTGTTCTTGAAGAAGCAGC 59.121 47.619 31.79 31.79 46.89 5.25
3065 3116 1.399471 GCTGTTCTTGAAGAAGCAGCG 60.399 52.381 28.75 14.29 42.88 5.18
3066 3117 2.138320 CTGTTCTTGAAGAAGCAGCGA 58.862 47.619 8.06 0.00 34.42 4.93
3067 3118 1.867233 TGTTCTTGAAGAAGCAGCGAC 59.133 47.619 8.06 0.00 34.42 5.19
3068 3119 1.195674 GTTCTTGAAGAAGCAGCGACC 59.804 52.381 8.06 0.00 34.42 4.79
3069 3120 0.681733 TCTTGAAGAAGCAGCGACCT 59.318 50.000 0.00 0.00 0.00 3.85
3070 3121 1.070758 TCTTGAAGAAGCAGCGACCTT 59.929 47.619 0.00 0.00 0.00 3.50
3071 3122 1.876156 CTTGAAGAAGCAGCGACCTTT 59.124 47.619 0.00 0.00 0.00 3.11
3072 3123 1.512926 TGAAGAAGCAGCGACCTTTC 58.487 50.000 0.00 0.00 0.00 2.62
3073 3124 1.202639 TGAAGAAGCAGCGACCTTTCA 60.203 47.619 0.00 0.00 0.00 2.69
3074 3125 2.079925 GAAGAAGCAGCGACCTTTCAT 58.920 47.619 0.00 0.00 0.00 2.57
3075 3126 2.191128 AGAAGCAGCGACCTTTCATT 57.809 45.000 0.00 0.00 0.00 2.57
3076 3127 1.808945 AGAAGCAGCGACCTTTCATTG 59.191 47.619 0.00 0.00 0.00 2.82
3077 3128 0.242017 AAGCAGCGACCTTTCATTGC 59.758 50.000 0.00 0.00 33.13 3.56
3078 3129 0.890542 AGCAGCGACCTTTCATTGCA 60.891 50.000 0.00 0.00 34.62 4.08
3079 3130 0.730494 GCAGCGACCTTTCATTGCAC 60.730 55.000 0.00 0.00 33.17 4.57
3080 3131 0.877071 CAGCGACCTTTCATTGCACT 59.123 50.000 0.00 0.00 0.00 4.40
3081 3132 1.135859 CAGCGACCTTTCATTGCACTC 60.136 52.381 0.00 0.00 0.00 3.51
3082 3133 1.160137 GCGACCTTTCATTGCACTCT 58.840 50.000 0.00 0.00 0.00 3.24
3083 3134 1.135859 GCGACCTTTCATTGCACTCTG 60.136 52.381 0.00 0.00 0.00 3.35
3084 3135 2.146342 CGACCTTTCATTGCACTCTGT 58.854 47.619 0.00 0.00 0.00 3.41
3085 3136 2.096069 CGACCTTTCATTGCACTCTGTG 60.096 50.000 0.00 0.00 36.51 3.66
3086 3137 2.880890 GACCTTTCATTGCACTCTGTGT 59.119 45.455 0.00 0.00 35.75 3.72
3087 3138 3.290710 ACCTTTCATTGCACTCTGTGTT 58.709 40.909 0.00 0.00 35.75 3.32
3088 3139 3.316308 ACCTTTCATTGCACTCTGTGTTC 59.684 43.478 0.00 0.00 35.75 3.18
3089 3140 3.548587 CTTTCATTGCACTCTGTGTTCG 58.451 45.455 0.00 0.00 35.75 3.95
3090 3141 2.524569 TCATTGCACTCTGTGTTCGA 57.475 45.000 0.00 0.00 35.75 3.71
3091 3142 3.044235 TCATTGCACTCTGTGTTCGAT 57.956 42.857 0.00 0.00 35.75 3.59
3092 3143 3.402110 TCATTGCACTCTGTGTTCGATT 58.598 40.909 0.00 0.00 35.75 3.34
3093 3144 3.814842 TCATTGCACTCTGTGTTCGATTT 59.185 39.130 0.00 0.00 35.75 2.17
3094 3145 4.994217 TCATTGCACTCTGTGTTCGATTTA 59.006 37.500 0.00 0.00 35.75 1.40
3098 3149 4.022329 TGCACTCTGTGTTCGATTTAGAGA 60.022 41.667 17.79 6.99 38.53 3.10
3113 3164 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
3114 3165 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
3115 3166 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
3116 3167 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
3117 3168 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
3118 3169 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
3119 3170 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
3120 3171 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
3121 3172 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
3122 3173 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
3148 3199 4.073293 TCTCAGTGGGAGTTGTCTTTTC 57.927 45.455 0.00 0.00 44.40 2.29
3189 3242 3.813166 TGCAAACTCAACTACTACAAGGC 59.187 43.478 0.00 0.00 0.00 4.35
3191 3244 3.314541 AACTCAACTACTACAAGGCCG 57.685 47.619 0.00 0.00 0.00 6.13
3200 3253 1.564348 ACTACAAGGCCGGGATTGATT 59.436 47.619 16.47 1.51 0.00 2.57
3201 3254 1.949525 CTACAAGGCCGGGATTGATTG 59.050 52.381 16.47 2.72 0.00 2.67
3202 3255 0.684153 ACAAGGCCGGGATTGATTGG 60.684 55.000 16.47 0.00 0.00 3.16
3223 3276 2.094854 GGATCGGTAAGTATAGGGTGCG 60.095 54.545 0.00 0.00 0.00 5.34
3248 3335 6.349363 GGATTTCAGCGATTAGTTCAAGGTTT 60.349 38.462 0.00 0.00 0.00 3.27
3322 3409 2.242926 TCTTCTGCTGTCAGCTAGTGT 58.757 47.619 24.76 0.00 42.97 3.55
3368 3455 9.196552 GCTTTGCAACTTATCAGTTTCTTTATT 57.803 29.630 0.00 0.00 40.66 1.40
3521 3615 4.165372 GGGATTACTTGAACCCCATGTCTA 59.835 45.833 0.00 0.00 37.04 2.59
3657 3751 3.950397 TGTTTTGGGTGACTATAGCTGG 58.050 45.455 0.00 0.00 0.00 4.85
3709 3803 2.672908 CTGTGCATCTGCCCAGGA 59.327 61.111 6.74 0.00 41.77 3.86
3711 3805 2.194388 CTGTGCATCTGCCCAGGACT 62.194 60.000 6.74 0.00 41.77 3.85
3720 3814 1.496429 CTGCCCAGGACTCCCAAATAT 59.504 52.381 0.00 0.00 33.88 1.28
3721 3815 2.711009 CTGCCCAGGACTCCCAAATATA 59.289 50.000 0.00 0.00 33.88 0.86
3770 3864 7.648510 GCTAAGTGCCAGTACTAGTTAATACTG 59.351 40.741 14.20 14.20 45.26 2.74
3879 3977 5.046910 TCTTCACTTGAATTTTCCATCGC 57.953 39.130 0.00 0.00 33.01 4.58
3981 4079 9.507329 ACAAACTCACATCTGATAGTGTTTAAT 57.493 29.630 15.67 9.13 37.07 1.40
4015 4113 9.639601 CTTTAAATCCTTACCCTGAATTGTTTC 57.360 33.333 0.00 0.00 0.00 2.78
4027 4125 7.651704 ACCCTGAATTGTTTCTAATTTCGTTTG 59.348 33.333 0.00 0.00 30.78 2.93
4482 4609 4.786425 TGCTGTGTTATGTGGGCATAATA 58.214 39.130 3.77 0.00 45.80 0.98
4570 4801 9.338291 CTGTGTTTTTATCATTCATGTCTTCTG 57.662 33.333 0.00 0.00 0.00 3.02
4661 4897 2.445145 TGGATGAGGAGGGTTTGTTTGA 59.555 45.455 0.00 0.00 0.00 2.69
4960 5205 1.133915 GTTGTGGTGGACCTTTCTCCA 60.134 52.381 0.00 0.00 38.05 3.86
4962 5207 2.626785 TGTGGTGGACCTTTCTCCATA 58.373 47.619 0.00 0.00 42.50 2.74
5153 5400 7.623268 CTTTGAACCAAAAGGTTTCTAATCG 57.377 36.000 0.92 0.00 32.75 3.34
5689 5946 4.642885 TGTGCTGTTGGTTTAGTTAGCTTT 59.357 37.500 0.00 0.00 32.66 3.51
5787 6044 8.893563 ATGGACTCCTTGGTTCATTAAATTTA 57.106 30.769 0.00 0.00 31.95 1.40
6110 6367 2.304180 AGTGGAACAGAGGATTGTGAGG 59.696 50.000 0.00 0.00 41.80 3.86
6144 6401 0.250234 TCTTGAGAAGACGGGCATGG 59.750 55.000 0.00 0.00 31.20 3.66
6145 6402 0.250234 CTTGAGAAGACGGGCATGGA 59.750 55.000 0.00 0.00 0.00 3.41
6662 6940 0.457851 GATCACTGTCGGAGGGTCAG 59.542 60.000 0.00 0.00 35.60 3.51
6693 6971 1.953559 TTTCTGGTCTGACAGTGTGC 58.046 50.000 10.38 0.00 39.48 4.57
6912 7190 7.679638 GCACTTACCCAAGAATATTGTTAGCAG 60.680 40.741 0.00 0.00 35.60 4.24
7071 7422 8.463930 TTCACTGGTACAATTTTTGAGAATCT 57.536 30.769 0.00 0.00 38.70 2.40
7142 7493 5.193099 AGCCAATATTCTGTACTTGGGTT 57.807 39.130 7.89 0.00 44.68 4.11
7157 7508 5.454966 ACTTGGGTTCTTAAGGTGTTGATT 58.545 37.500 1.85 0.00 0.00 2.57
7207 7558 6.836527 AGTATTCAGTTAGCTATGTCAGTCCT 59.163 38.462 0.00 0.00 0.00 3.85
7247 7598 2.766313 TGAGATGAACGTTTCCTGGTG 58.234 47.619 0.46 0.00 0.00 4.17
7267 7618 0.740868 TGCTCGGTGTGAATAGCAGC 60.741 55.000 0.00 0.00 39.92 5.25
7487 7838 4.644685 AGTCTTACAAACTTGTGGTGCATT 59.355 37.500 5.34 0.00 42.31 3.56
7512 7863 6.975772 TGGTTGTTGCTTGTGTTTTTATAGAC 59.024 34.615 0.00 0.00 0.00 2.59
7598 7949 1.201647 ACTTACGCTCGCAGTGTGTAT 59.798 47.619 3.13 0.00 44.56 2.29
7610 7961 3.265791 CAGTGTGTATGGAGAAAGCCTC 58.734 50.000 0.00 0.00 41.22 4.70
7611 7962 2.906389 AGTGTGTATGGAGAAAGCCTCA 59.094 45.455 0.00 0.00 43.76 3.86
7623 7974 5.584251 GGAGAAAGCCTCAAAGATGTTAGAG 59.416 44.000 0.00 0.00 43.76 2.43
7628 7979 4.478206 CCTCAAAGATGTTAGAGGCAGA 57.522 45.455 0.00 0.00 40.98 4.26
7663 8014 0.534877 TCACAACACTGCGGATGCTT 60.535 50.000 0.00 0.00 43.34 3.91
7712 8065 4.573900 CTGAAGACAAACTGGTAGATGCT 58.426 43.478 0.00 0.00 0.00 3.79
7716 8069 4.718961 AGACAAACTGGTAGATGCTGTTT 58.281 39.130 0.00 0.00 0.00 2.83
7724 8077 1.135972 GTAGATGCTGTTTGTGGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.013005 CGAGATGCCATCGCTGGATC 61.013 60.000 10.06 9.20 46.37 3.36
1 2 1.005275 CGAGATGCCATCGCTGGAT 60.005 57.895 10.06 0.00 46.37 3.41
2 3 2.355445 GACGAGATGCCATCGCTGGA 62.355 60.000 10.06 0.00 46.37 3.86
3 4 1.953138 GACGAGATGCCATCGCTGG 60.953 63.158 6.85 0.00 43.91 4.85
5 6 2.026734 CGACGAGATGCCATCGCT 59.973 61.111 6.85 0.00 43.91 4.93
6 7 3.032609 CCGACGAGATGCCATCGC 61.033 66.667 0.00 0.00 43.91 4.58
7 8 1.946156 CACCGACGAGATGCCATCG 60.946 63.158 0.00 0.00 45.54 3.84
8 9 1.592669 CCACCGACGAGATGCCATC 60.593 63.158 0.00 0.00 0.00 3.51
9 10 1.040893 TACCACCGACGAGATGCCAT 61.041 55.000 0.00 0.00 0.00 4.40
12 13 1.019673 TACTACCACCGACGAGATGC 58.980 55.000 0.00 0.00 0.00 3.91
13 14 1.332997 GGTACTACCACCGACGAGATG 59.667 57.143 0.00 0.00 38.42 2.90
14 15 1.211457 AGGTACTACCACCGACGAGAT 59.789 52.381 8.01 0.00 43.84 2.75
16 17 2.208431 CTAGGTACTACCACCGACGAG 58.792 57.143 8.01 0.00 43.84 4.18
17 18 1.743772 GCTAGGTACTACCACCGACGA 60.744 57.143 8.01 0.00 43.84 4.20
18 19 0.659957 GCTAGGTACTACCACCGACG 59.340 60.000 8.01 0.00 43.84 5.12
19 20 1.028130 GGCTAGGTACTACCACCGAC 58.972 60.000 8.01 0.00 43.84 4.79
20 21 0.625316 TGGCTAGGTACTACCACCGA 59.375 55.000 8.01 0.00 43.84 4.69
22 23 3.181457 GGATTTGGCTAGGTACTACCACC 60.181 52.174 8.01 6.53 41.95 4.61
23 24 3.492137 CGGATTTGGCTAGGTACTACCAC 60.492 52.174 8.01 0.00 41.95 4.16
24 25 2.696707 CGGATTTGGCTAGGTACTACCA 59.303 50.000 8.01 0.00 41.95 3.25
25 26 2.036862 CCGGATTTGGCTAGGTACTACC 59.963 54.545 0.00 0.00 41.75 3.18
26 27 3.382048 CCGGATTTGGCTAGGTACTAC 57.618 52.381 0.00 0.00 41.75 2.73
56 57 1.388837 AAGCACAACCACCCGGAAAC 61.389 55.000 0.73 0.00 35.59 2.78
57 58 1.076632 AAGCACAACCACCCGGAAA 60.077 52.632 0.73 0.00 35.59 3.13
58 59 1.826054 CAAGCACAACCACCCGGAA 60.826 57.895 0.73 0.00 35.59 4.30
59 60 2.203280 CAAGCACAACCACCCGGA 60.203 61.111 0.73 0.00 35.59 5.14
60 61 3.294493 CCAAGCACAACCACCCGG 61.294 66.667 0.00 0.00 38.77 5.73
61 62 3.977244 GCCAAGCACAACCACCCG 61.977 66.667 0.00 0.00 0.00 5.28
62 63 3.615709 GGCCAAGCACAACCACCC 61.616 66.667 0.00 0.00 0.00 4.61
63 64 2.837291 TGGCCAAGCACAACCACC 60.837 61.111 0.61 0.00 0.00 4.61
64 65 1.181098 ATCTGGCCAAGCACAACCAC 61.181 55.000 7.01 0.00 0.00 4.16
65 66 0.895100 GATCTGGCCAAGCACAACCA 60.895 55.000 7.01 0.00 0.00 3.67
66 67 1.598701 GGATCTGGCCAAGCACAACC 61.599 60.000 7.01 0.00 0.00 3.77
67 68 1.885871 GGATCTGGCCAAGCACAAC 59.114 57.895 7.01 0.00 0.00 3.32
68 69 1.675310 CGGATCTGGCCAAGCACAA 60.675 57.895 7.01 0.00 0.00 3.33
69 70 2.046023 CGGATCTGGCCAAGCACA 60.046 61.111 7.01 0.00 0.00 4.57
70 71 2.825836 CCGGATCTGGCCAAGCAC 60.826 66.667 7.01 0.00 0.00 4.40
78 79 1.586422 CACACTATTGCCGGATCTGG 58.414 55.000 16.98 16.98 0.00 3.86
79 80 1.586422 CCACACTATTGCCGGATCTG 58.414 55.000 5.05 0.00 0.00 2.90
80 81 0.179045 GCCACACTATTGCCGGATCT 60.179 55.000 5.05 0.00 0.00 2.75
81 82 0.463654 TGCCACACTATTGCCGGATC 60.464 55.000 5.05 0.00 0.00 3.36
82 83 0.464373 CTGCCACACTATTGCCGGAT 60.464 55.000 5.05 0.00 0.00 4.18
83 84 1.078497 CTGCCACACTATTGCCGGA 60.078 57.895 5.05 0.00 0.00 5.14
84 85 2.764314 GCTGCCACACTATTGCCGG 61.764 63.158 0.00 0.00 0.00 6.13
85 86 2.764314 GGCTGCCACACTATTGCCG 61.764 63.158 15.17 0.00 0.00 5.69
86 87 1.039233 ATGGCTGCCACACTATTGCC 61.039 55.000 25.99 0.00 35.80 4.52
87 88 0.383231 GATGGCTGCCACACTATTGC 59.617 55.000 25.99 2.39 35.80 3.56
88 89 0.659427 CGATGGCTGCCACACTATTG 59.341 55.000 25.99 7.86 35.80 1.90
89 90 0.464373 CCGATGGCTGCCACACTATT 60.464 55.000 25.99 6.74 35.80 1.73
90 91 1.146930 CCGATGGCTGCCACACTAT 59.853 57.895 25.99 7.63 35.80 2.12
91 92 2.238847 GACCGATGGCTGCCACACTA 62.239 60.000 25.99 0.00 35.80 2.74
92 93 3.612247 GACCGATGGCTGCCACACT 62.612 63.158 25.99 8.54 35.80 3.55
93 94 3.127533 GACCGATGGCTGCCACAC 61.128 66.667 25.99 19.33 35.80 3.82
94 95 4.758251 CGACCGATGGCTGCCACA 62.758 66.667 25.99 1.30 35.80 4.17
98 99 3.643978 GATGCGACCGATGGCTGC 61.644 66.667 0.00 0.00 0.00 5.25
99 100 2.969238 GGATGCGACCGATGGCTG 60.969 66.667 0.00 0.00 0.00 4.85
108 109 4.570663 CTCGTCCCCGGATGCGAC 62.571 72.222 8.71 1.62 33.95 5.19
111 112 3.917760 CTCCTCGTCCCCGGATGC 61.918 72.222 0.73 0.00 33.95 3.91
112 113 2.442272 ACTCCTCGTCCCCGGATG 60.442 66.667 0.73 0.00 33.95 3.51
113 114 2.442272 CACTCCTCGTCCCCGGAT 60.442 66.667 0.73 0.00 33.95 4.18
116 117 4.135153 CTGCACTCCTCGTCCCCG 62.135 72.222 0.00 0.00 0.00 5.73
117 118 2.680352 TCTGCACTCCTCGTCCCC 60.680 66.667 0.00 0.00 0.00 4.81
118 119 2.574399 GTCTGCACTCCTCGTCCC 59.426 66.667 0.00 0.00 0.00 4.46
119 120 2.179517 CGTCTGCACTCCTCGTCC 59.820 66.667 0.00 0.00 0.00 4.79
120 121 2.505118 GCGTCTGCACTCCTCGTC 60.505 66.667 0.00 0.00 42.15 4.20
121 122 4.406173 CGCGTCTGCACTCCTCGT 62.406 66.667 0.00 0.00 42.97 4.18
126 127 3.088500 GATTGGCGCGTCTGCACTC 62.089 63.158 13.81 0.00 42.97 3.51
127 128 3.121030 GATTGGCGCGTCTGCACT 61.121 61.111 13.81 0.00 42.97 4.40
128 129 4.166011 GGATTGGCGCGTCTGCAC 62.166 66.667 13.81 0.41 42.97 4.57
129 130 4.695993 TGGATTGGCGCGTCTGCA 62.696 61.111 13.81 0.00 42.97 4.41
130 131 3.869272 CTGGATTGGCGCGTCTGC 61.869 66.667 13.81 0.00 37.91 4.26
131 132 1.148157 CTACTGGATTGGCGCGTCTG 61.148 60.000 13.81 0.00 0.00 3.51
132 133 1.141881 CTACTGGATTGGCGCGTCT 59.858 57.895 13.81 0.00 0.00 4.18
133 134 2.526120 GCTACTGGATTGGCGCGTC 61.526 63.158 2.29 2.29 0.00 5.19
134 135 2.511600 GCTACTGGATTGGCGCGT 60.512 61.111 8.43 0.00 0.00 6.01
135 136 3.630148 CGCTACTGGATTGGCGCG 61.630 66.667 0.00 0.00 41.08 6.86
136 137 3.272334 CCGCTACTGGATTGGCGC 61.272 66.667 0.00 0.00 45.21 6.53
137 138 2.588877 CCCGCTACTGGATTGGCG 60.589 66.667 0.00 0.00 45.97 5.69
170 171 1.153823 CGCCCCAGACTCGTTACTG 60.154 63.158 0.00 0.00 0.00 2.74
171 172 2.348888 CCGCCCCAGACTCGTTACT 61.349 63.158 0.00 0.00 0.00 2.24
173 174 3.072468 CCCGCCCCAGACTCGTTA 61.072 66.667 0.00 0.00 0.00 3.18
223 226 3.872511 TGCAATTCCTTTGATCGCAAT 57.127 38.095 0.00 0.00 37.53 3.56
229 232 2.493278 CTCCGGTTGCAATTCCTTTGAT 59.507 45.455 0.59 0.00 37.53 2.57
276 279 4.576463 AGTTGCCTCAGAAACAACAACTAG 59.424 41.667 14.62 0.00 44.20 2.57
280 283 3.351740 TCAGTTGCCTCAGAAACAACAA 58.648 40.909 14.62 3.40 44.77 2.83
303 306 3.005155 TCATAGTCGTCGGATCTCGTCTA 59.995 47.826 11.57 11.57 40.32 2.59
338 341 0.250234 CCGACTGATCTTTCTGGGCA 59.750 55.000 0.00 0.00 0.00 5.36
354 357 3.994392 GAGAAATGTTTGTAGTCAGCCGA 59.006 43.478 0.00 0.00 0.00 5.54
375 378 8.356657 CACCCAAAAATAGACATTGTACAAAGA 58.643 33.333 17.18 0.00 0.00 2.52
402 411 7.271511 TGGTTCAAAGACATAGCACAAATTTT 58.728 30.769 0.00 0.00 0.00 1.82
429 438 2.807967 ACAATGCATAATCATCGTCCGG 59.192 45.455 0.00 0.00 0.00 5.14
430 439 5.590104 TTACAATGCATAATCATCGTCCG 57.410 39.130 0.00 0.00 0.00 4.79
535 544 0.732538 GTTGCCCTGCGTTGTAATGC 60.733 55.000 1.94 1.94 41.27 3.56
536 545 0.881118 AGTTGCCCTGCGTTGTAATG 59.119 50.000 0.00 0.00 0.00 1.90
537 546 2.483014 TAGTTGCCCTGCGTTGTAAT 57.517 45.000 0.00 0.00 0.00 1.89
616 626 0.600782 AACGTTCGCCGGCTAAGAAA 60.601 50.000 26.68 7.90 42.24 2.52
624 634 0.387622 TCTTAGTGAACGTTCGCCGG 60.388 55.000 32.22 22.99 42.24 6.13
637 647 6.258727 CGTTCATAAATGCCATCACTCTTAGT 59.741 38.462 0.00 0.00 0.00 2.24
640 650 4.201950 GCGTTCATAAATGCCATCACTCTT 60.202 41.667 0.00 0.00 40.82 2.85
657 667 2.778299 ACTTGCCATCTAAAGCGTTCA 58.222 42.857 0.00 0.00 0.00 3.18
672 682 2.224161 TGCCAACCCATACAAAACTTGC 60.224 45.455 0.00 0.00 0.00 4.01
699 709 3.492421 AAACTGCCATGCGTTTATGAG 57.508 42.857 4.76 0.00 35.15 2.90
722 732 5.070180 TGAAGAAATTGTCATGGGCTTTTCA 59.930 36.000 11.79 0.00 0.00 2.69
723 733 5.540911 TGAAGAAATTGTCATGGGCTTTTC 58.459 37.500 0.00 0.00 0.00 2.29
724 734 5.305128 TCTGAAGAAATTGTCATGGGCTTTT 59.695 36.000 0.00 0.00 0.00 2.27
725 735 4.834496 TCTGAAGAAATTGTCATGGGCTTT 59.166 37.500 0.00 0.00 0.00 3.51
726 736 4.410099 TCTGAAGAAATTGTCATGGGCTT 58.590 39.130 0.00 0.00 0.00 4.35
765 775 3.740044 TTCTCGACGATGGCATTTTTC 57.260 42.857 0.00 0.00 0.00 2.29
861 871 3.100862 GAGGATGGCAAGCGAACGC 62.101 63.158 11.31 11.31 42.33 4.84
862 872 2.464459 GGAGGATGGCAAGCGAACG 61.464 63.158 0.00 0.00 0.00 3.95
863 873 1.078143 AGGAGGATGGCAAGCGAAC 60.078 57.895 0.00 0.00 0.00 3.95
864 874 1.221840 GAGGAGGATGGCAAGCGAA 59.778 57.895 0.00 0.00 0.00 4.70
865 875 2.735772 GGAGGAGGATGGCAAGCGA 61.736 63.158 0.00 0.00 0.00 4.93
866 876 2.203126 GGAGGAGGATGGCAAGCG 60.203 66.667 0.00 0.00 0.00 4.68
955 970 0.603975 GTTGTGGACTGAGGAGCACC 60.604 60.000 0.00 0.00 0.00 5.01
985 1000 3.443045 CATTGGTCTGGTGGCGGC 61.443 66.667 0.00 0.00 0.00 6.53
1137 1155 1.305046 GAGGAGGGAGAACCGGTGA 60.305 63.158 8.52 0.00 46.96 4.02
1371 1389 3.406595 GAGCCCCACATTAGCCGCT 62.407 63.158 0.00 0.00 0.00 5.52
1437 1455 1.006571 GTCCTCAACGACGAAGGCA 60.007 57.895 0.00 0.00 0.00 4.75
1575 1593 0.528017 CTAAGCTCTCACCTGCGACA 59.472 55.000 0.00 0.00 0.00 4.35
1648 1673 2.396601 CGCAACACAACATGCATTCTT 58.603 42.857 0.00 0.00 42.68 2.52
1649 1674 1.931709 GCGCAACACAACATGCATTCT 60.932 47.619 0.30 0.00 42.68 2.40
1723 1762 8.424918 TCCTAACTATAGAGCAAAGATCAAAGG 58.575 37.037 6.78 0.00 0.00 3.11
1778 1817 7.064966 GCAAAATATTTCCAATCTCCCAACAAG 59.935 37.037 0.10 0.00 0.00 3.16
1782 1821 6.617782 TGCAAAATATTTCCAATCTCCCAA 57.382 33.333 0.10 0.00 0.00 4.12
1824 1863 6.986231 TCTATGATGATAACACATCCACACAC 59.014 38.462 0.00 0.00 43.96 3.82
1844 1883 1.405256 GGCTCCAGATCGCCATCTATG 60.405 57.143 4.64 0.00 45.59 2.23
1918 1957 8.795786 TTAGTTTCACAAATTTAGCATCACAC 57.204 30.769 0.00 0.00 0.00 3.82
2070 2113 8.575736 TTTAGGGTGAGGATTGAATTAGGATA 57.424 34.615 0.00 0.00 0.00 2.59
2148 2191 0.528466 GCCGATGTTGCTCGATCTCA 60.528 55.000 0.00 0.00 41.12 3.27
2154 2197 2.291843 CTACAGCCGATGTTGCTCG 58.708 57.895 0.00 0.00 39.96 5.03
2176 2219 9.736414 CAATCCTATCAATCTCTGATTTGGTAT 57.264 33.333 0.00 0.00 42.46 2.73
2195 2238 1.686325 GCCTCGGGCTGTCAATCCTA 61.686 60.000 7.58 0.00 46.69 2.94
2211 2254 2.164865 CTTGCTCGTCCACTCTGCCT 62.165 60.000 0.00 0.00 0.00 4.75
2219 2262 1.371183 CTCCAACCTTGCTCGTCCA 59.629 57.895 0.00 0.00 0.00 4.02
2244 2287 1.067084 AGAGCATCACGCCAGATCG 59.933 57.895 0.00 0.00 44.04 3.69
2252 2295 0.809241 GCCTCTTCCAGAGCATCACG 60.809 60.000 0.00 0.00 40.98 4.35
2320 2363 2.003672 CGCACCTTATTCGGAACCG 58.996 57.895 6.94 6.94 41.35 4.44
2348 2391 0.388520 TGTGTGCCTTCTCGTCATCG 60.389 55.000 0.00 0.00 38.55 3.84
2352 2395 0.032130 TCTGTGTGTGCCTTCTCGTC 59.968 55.000 0.00 0.00 0.00 4.20
2367 2410 1.583054 GACACAAAGAACGGCTCTGT 58.417 50.000 0.00 0.00 33.37 3.41
2372 2415 2.943653 CCGGACACAAAGAACGGC 59.056 61.111 0.00 0.00 37.93 5.68
2413 2460 0.463116 AGAGGTGTGGCGTCGTTTTT 60.463 50.000 0.00 0.00 37.10 1.94
2418 2465 2.126307 CTCAGAGGTGTGGCGTCG 60.126 66.667 0.00 0.00 37.10 5.12
2422 2469 2.665603 GACCCTCAGAGGTGTGGC 59.334 66.667 15.86 0.00 41.42 5.01
2427 2474 1.380112 GCCTACGACCCTCAGAGGT 60.380 63.158 15.86 3.51 45.12 3.85
2444 2491 2.406616 ATCAACCCGGCGATGTTGC 61.407 57.895 26.62 0.00 41.21 4.17
2445 2492 1.024046 TCATCAACCCGGCGATGTTG 61.024 55.000 25.95 25.95 42.46 3.33
2446 2493 1.024579 GTCATCAACCCGGCGATGTT 61.025 55.000 19.93 8.87 39.99 2.71
2447 2494 1.449601 GTCATCAACCCGGCGATGT 60.450 57.895 19.93 1.47 39.99 3.06
2448 2495 2.525248 CGTCATCAACCCGGCGATG 61.525 63.158 9.30 16.52 40.34 3.84
2449 2496 2.202878 CGTCATCAACCCGGCGAT 60.203 61.111 9.30 0.00 0.00 4.58
2462 2509 3.664025 CTCAGGAATGCCGCCGTCA 62.664 63.158 0.00 0.00 39.96 4.35
2472 2519 0.842635 GGCCATCAGGACTCAGGAAT 59.157 55.000 0.00 0.00 41.07 3.01
2596 2643 1.962807 TGGTTTGATTCCAGCCACAAG 59.037 47.619 0.00 0.00 0.00 3.16
2641 2688 0.247814 GAACGAGCGATGCCACATTG 60.248 55.000 0.00 0.00 0.00 2.82
2654 2701 4.468095 AGGAACGTGAAAAATGAACGAG 57.532 40.909 0.97 0.00 39.64 4.18
2680 2727 2.046285 CATCAACCCCGCCCACTTC 61.046 63.158 0.00 0.00 0.00 3.01
2712 2759 1.002134 ACATGCACCACTACAGGCC 60.002 57.895 0.00 0.00 0.00 5.19
2764 2811 0.523072 GTCGACATGTGCCATGCTTT 59.477 50.000 11.55 0.00 0.00 3.51
2777 2824 1.188871 TGGCATGGTACTGGTCGACA 61.189 55.000 18.91 2.63 0.00 4.35
2796 2843 2.202492 GCGCGTCTCGATGACAGT 60.202 61.111 8.43 0.00 45.60 3.55
2837 2884 0.320050 TGTCGCACTCATACTTGCCA 59.680 50.000 0.00 0.00 35.14 4.92
2876 2923 2.743928 GCCAACCAGGAGAGCACG 60.744 66.667 0.00 0.00 41.22 5.34
3008 3059 2.289072 ACGTTGATGTAAGTGCAGCTCT 60.289 45.455 0.00 0.00 0.00 4.09
3009 3060 2.069273 ACGTTGATGTAAGTGCAGCTC 58.931 47.619 0.00 0.00 0.00 4.09
3012 3063 1.732259 GGGACGTTGATGTAAGTGCAG 59.268 52.381 0.00 0.00 0.00 4.41
3013 3064 1.609580 GGGGACGTTGATGTAAGTGCA 60.610 52.381 0.00 0.00 0.00 4.57
3015 3066 2.346803 CTGGGGACGTTGATGTAAGTG 58.653 52.381 0.00 0.00 0.00 3.16
3016 3067 1.278127 CCTGGGGACGTTGATGTAAGT 59.722 52.381 0.00 0.00 0.00 2.24
3017 3068 1.553248 TCCTGGGGACGTTGATGTAAG 59.447 52.381 0.00 0.00 0.00 2.34
3018 3069 1.553248 CTCCTGGGGACGTTGATGTAA 59.447 52.381 0.00 0.00 0.00 2.41
3019 3070 1.191535 CTCCTGGGGACGTTGATGTA 58.808 55.000 0.00 0.00 0.00 2.29
3020 3071 0.544357 TCTCCTGGGGACGTTGATGT 60.544 55.000 0.00 0.00 0.00 3.06
3021 3072 0.176680 CTCTCCTGGGGACGTTGATG 59.823 60.000 0.00 0.00 0.00 3.07
3022 3073 1.617947 GCTCTCCTGGGGACGTTGAT 61.618 60.000 0.00 0.00 0.00 2.57
3023 3074 2.283529 GCTCTCCTGGGGACGTTGA 61.284 63.158 0.00 0.00 0.00 3.18
3024 3075 2.266055 GCTCTCCTGGGGACGTTG 59.734 66.667 0.00 0.00 0.00 4.10
3025 3076 2.203788 TGCTCTCCTGGGGACGTT 60.204 61.111 0.00 0.00 0.00 3.99
3026 3077 2.681778 CTGCTCTCCTGGGGACGT 60.682 66.667 0.00 0.00 0.00 4.34
3027 3078 2.363018 TCTGCTCTCCTGGGGACG 60.363 66.667 0.00 0.00 0.00 4.79
3028 3079 2.730524 GCTCTGCTCTCCTGGGGAC 61.731 68.421 0.00 0.00 0.00 4.46
3029 3080 2.364842 GCTCTGCTCTCCTGGGGA 60.365 66.667 0.00 0.00 0.00 4.81
3030 3081 2.365370 AGCTCTGCTCTCCTGGGG 60.365 66.667 0.00 0.00 30.62 4.96
3031 3082 1.551908 AACAGCTCTGCTCTCCTGGG 61.552 60.000 0.00 0.00 36.40 4.45
3032 3083 0.108233 GAACAGCTCTGCTCTCCTGG 60.108 60.000 0.00 0.00 36.40 4.45
3033 3084 0.896923 AGAACAGCTCTGCTCTCCTG 59.103 55.000 0.00 0.00 36.40 3.86
3034 3085 1.275856 CAAGAACAGCTCTGCTCTCCT 59.724 52.381 3.58 0.00 36.40 3.69
3035 3086 1.274728 TCAAGAACAGCTCTGCTCTCC 59.725 52.381 3.58 0.00 36.40 3.71
3036 3087 2.739885 TCAAGAACAGCTCTGCTCTC 57.260 50.000 3.58 0.00 36.40 3.20
3037 3088 2.632028 TCTTCAAGAACAGCTCTGCTCT 59.368 45.455 0.00 0.00 36.40 4.09
3038 3089 3.037431 TCTTCAAGAACAGCTCTGCTC 57.963 47.619 0.00 0.00 36.40 4.26
3039 3090 3.401182 CTTCTTCAAGAACAGCTCTGCT 58.599 45.455 0.00 0.00 32.37 4.24
3040 3091 2.095819 GCTTCTTCAAGAACAGCTCTGC 60.096 50.000 4.10 0.00 33.37 4.26
3041 3092 3.136763 TGCTTCTTCAAGAACAGCTCTG 58.863 45.455 11.56 0.00 33.37 3.35
3042 3093 3.401182 CTGCTTCTTCAAGAACAGCTCT 58.599 45.455 11.56 0.00 31.70 4.09
3043 3094 2.095819 GCTGCTTCTTCAAGAACAGCTC 60.096 50.000 28.91 13.69 45.27 4.09
3044 3095 1.878734 GCTGCTTCTTCAAGAACAGCT 59.121 47.619 28.91 0.00 45.27 4.24
3045 3096 1.399471 CGCTGCTTCTTCAAGAACAGC 60.399 52.381 27.68 27.68 45.26 4.40
3046 3097 2.096516 GTCGCTGCTTCTTCAAGAACAG 60.097 50.000 18.25 18.25 36.91 3.16
3047 3098 1.867233 GTCGCTGCTTCTTCAAGAACA 59.133 47.619 0.00 0.00 29.89 3.18
3048 3099 1.195674 GGTCGCTGCTTCTTCAAGAAC 59.804 52.381 0.00 0.00 29.89 3.01
3049 3100 1.070758 AGGTCGCTGCTTCTTCAAGAA 59.929 47.619 0.00 0.00 32.50 2.52
3050 3101 0.681733 AGGTCGCTGCTTCTTCAAGA 59.318 50.000 0.00 0.00 0.00 3.02
3051 3102 1.517242 AAGGTCGCTGCTTCTTCAAG 58.483 50.000 0.00 0.00 0.00 3.02
3052 3103 1.873591 GAAAGGTCGCTGCTTCTTCAA 59.126 47.619 0.00 0.00 0.00 2.69
3053 3104 1.202639 TGAAAGGTCGCTGCTTCTTCA 60.203 47.619 0.00 0.00 0.00 3.02
3054 3105 1.512926 TGAAAGGTCGCTGCTTCTTC 58.487 50.000 0.00 0.00 0.00 2.87
3055 3106 2.191128 ATGAAAGGTCGCTGCTTCTT 57.809 45.000 0.00 0.00 0.00 2.52
3056 3107 1.808945 CAATGAAAGGTCGCTGCTTCT 59.191 47.619 0.00 0.00 0.00 2.85
3057 3108 1.730446 GCAATGAAAGGTCGCTGCTTC 60.730 52.381 0.00 0.00 33.35 3.86
3058 3109 0.242017 GCAATGAAAGGTCGCTGCTT 59.758 50.000 0.00 0.00 33.35 3.91
3059 3110 0.890542 TGCAATGAAAGGTCGCTGCT 60.891 50.000 0.00 0.00 35.81 4.24
3060 3111 0.730494 GTGCAATGAAAGGTCGCTGC 60.730 55.000 0.00 0.00 35.52 5.25
3061 3112 0.877071 AGTGCAATGAAAGGTCGCTG 59.123 50.000 0.00 0.00 0.00 5.18
3062 3113 1.160137 GAGTGCAATGAAAGGTCGCT 58.840 50.000 0.00 0.00 0.00 4.93
3063 3114 1.135859 CAGAGTGCAATGAAAGGTCGC 60.136 52.381 0.00 0.00 0.00 5.19
3064 3115 2.096069 CACAGAGTGCAATGAAAGGTCG 60.096 50.000 0.00 0.00 0.00 4.79
3065 3116 2.880890 ACACAGAGTGCAATGAAAGGTC 59.119 45.455 0.00 0.00 36.98 3.85
3066 3117 2.936202 ACACAGAGTGCAATGAAAGGT 58.064 42.857 0.00 0.00 36.98 3.50
3067 3118 3.607775 CGAACACAGAGTGCAATGAAAGG 60.608 47.826 0.00 0.00 36.98 3.11
3068 3119 3.248363 TCGAACACAGAGTGCAATGAAAG 59.752 43.478 0.00 0.00 36.98 2.62
3069 3120 3.202097 TCGAACACAGAGTGCAATGAAA 58.798 40.909 0.00 0.00 36.98 2.69
3070 3121 2.832563 TCGAACACAGAGTGCAATGAA 58.167 42.857 0.00 0.00 36.98 2.57
3071 3122 2.524569 TCGAACACAGAGTGCAATGA 57.475 45.000 0.00 0.00 36.98 2.57
3072 3123 3.818961 AATCGAACACAGAGTGCAATG 57.181 42.857 0.00 0.00 36.98 2.82
3073 3124 5.237815 TCTAAATCGAACACAGAGTGCAAT 58.762 37.500 0.00 0.00 36.98 3.56
3074 3125 4.627058 TCTAAATCGAACACAGAGTGCAA 58.373 39.130 0.00 0.00 36.98 4.08
3075 3126 4.022329 TCTCTAAATCGAACACAGAGTGCA 60.022 41.667 13.22 0.00 36.98 4.57
3076 3127 4.486090 TCTCTAAATCGAACACAGAGTGC 58.514 43.478 13.22 0.00 36.98 4.40
3077 3128 5.098893 CCTCTCTAAATCGAACACAGAGTG 58.901 45.833 13.22 11.45 39.75 3.51
3078 3129 4.158764 CCCTCTCTAAATCGAACACAGAGT 59.841 45.833 13.22 0.00 35.36 3.24
3079 3130 4.399618 TCCCTCTCTAAATCGAACACAGAG 59.600 45.833 9.29 9.29 35.18 3.35
3080 3131 4.341487 TCCCTCTCTAAATCGAACACAGA 58.659 43.478 0.00 0.00 0.00 3.41
3081 3132 4.440802 CCTCCCTCTCTAAATCGAACACAG 60.441 50.000 0.00 0.00 0.00 3.66
3082 3133 3.447586 CCTCCCTCTCTAAATCGAACACA 59.552 47.826 0.00 0.00 0.00 3.72
3083 3134 3.181474 CCCTCCCTCTCTAAATCGAACAC 60.181 52.174 0.00 0.00 0.00 3.32
3084 3135 3.031736 CCCTCCCTCTCTAAATCGAACA 58.968 50.000 0.00 0.00 0.00 3.18
3085 3136 3.297736 TCCCTCCCTCTCTAAATCGAAC 58.702 50.000 0.00 0.00 0.00 3.95
3086 3137 3.567397 CTCCCTCCCTCTCTAAATCGAA 58.433 50.000 0.00 0.00 0.00 3.71
3087 3138 2.158445 CCTCCCTCCCTCTCTAAATCGA 60.158 54.545 0.00 0.00 0.00 3.59
3088 3139 2.243810 CCTCCCTCCCTCTCTAAATCG 58.756 57.143 0.00 0.00 0.00 3.34
3089 3140 2.180308 TCCCTCCCTCCCTCTCTAAATC 59.820 54.545 0.00 0.00 0.00 2.17
3090 3141 2.181196 CTCCCTCCCTCCCTCTCTAAAT 59.819 54.545 0.00 0.00 0.00 1.40
3091 3142 1.576272 CTCCCTCCCTCCCTCTCTAAA 59.424 57.143 0.00 0.00 0.00 1.85
3092 3143 1.236708 CTCCCTCCCTCCCTCTCTAA 58.763 60.000 0.00 0.00 0.00 2.10
3093 3144 0.703056 CCTCCCTCCCTCCCTCTCTA 60.703 65.000 0.00 0.00 0.00 2.43
3094 3145 2.018086 CCTCCCTCCCTCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
3098 3149 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
3113 3164 2.962421 CACTGAGATTACTCCCTCCCTC 59.038 54.545 0.00 0.00 41.99 4.30
3114 3165 2.359781 CCACTGAGATTACTCCCTCCCT 60.360 54.545 0.00 0.00 41.99 4.20
3115 3166 2.043227 CCACTGAGATTACTCCCTCCC 58.957 57.143 0.00 0.00 41.99 4.30
3116 3167 2.043227 CCCACTGAGATTACTCCCTCC 58.957 57.143 0.00 0.00 41.99 4.30
3117 3168 2.962421 CTCCCACTGAGATTACTCCCTC 59.038 54.545 0.00 0.00 44.42 4.30
3118 3169 2.316372 ACTCCCACTGAGATTACTCCCT 59.684 50.000 0.00 0.00 44.42 4.20
3119 3170 2.753247 ACTCCCACTGAGATTACTCCC 58.247 52.381 0.00 0.00 44.42 4.30
3120 3171 3.515901 ACAACTCCCACTGAGATTACTCC 59.484 47.826 0.00 0.00 44.42 3.85
3121 3172 4.464597 AGACAACTCCCACTGAGATTACTC 59.535 45.833 0.00 0.00 44.42 2.59
3122 3173 4.421131 AGACAACTCCCACTGAGATTACT 58.579 43.478 0.00 0.00 44.42 2.24
3189 3242 0.606401 CCGATCCCAATCAATCCCGG 60.606 60.000 0.00 0.00 31.76 5.73
3191 3244 3.181443 ACTTACCGATCCCAATCAATCCC 60.181 47.826 0.00 0.00 31.76 3.85
3200 3253 3.503365 CACCCTATACTTACCGATCCCA 58.497 50.000 0.00 0.00 0.00 4.37
3201 3254 2.233186 GCACCCTATACTTACCGATCCC 59.767 54.545 0.00 0.00 0.00 3.85
3202 3255 2.094854 CGCACCCTATACTTACCGATCC 60.095 54.545 0.00 0.00 0.00 3.36
3223 3276 4.636206 ACCTTGAACTAATCGCTGAAATCC 59.364 41.667 0.00 0.00 0.00 3.01
3252 3339 8.981647 GTTGGTATTTAAACGAGTAAAGTCTGA 58.018 33.333 0.00 0.00 0.00 3.27
3253 3340 8.985805 AGTTGGTATTTAAACGAGTAAAGTCTG 58.014 33.333 0.00 0.00 0.00 3.51
3254 3341 9.201127 GAGTTGGTATTTAAACGAGTAAAGTCT 57.799 33.333 0.00 0.00 0.00 3.24
3255 3342 8.981647 TGAGTTGGTATTTAAACGAGTAAAGTC 58.018 33.333 0.00 0.00 0.00 3.01
3260 3347 9.577110 CTACATGAGTTGGTATTTAAACGAGTA 57.423 33.333 0.00 0.00 0.00 2.59
3274 3361 6.986817 CAGTTTACCCTATCTACATGAGTTGG 59.013 42.308 0.00 0.00 0.00 3.77
3322 3409 6.648879 AAGCACCAATTTTTCTAGCTAACA 57.351 33.333 0.00 0.00 0.00 2.41
3330 3417 4.516323 AGTTGCAAAGCACCAATTTTTCT 58.484 34.783 0.00 0.00 38.71 2.52
3332 3419 6.541641 TGATAAGTTGCAAAGCACCAATTTTT 59.458 30.769 0.00 0.00 38.71 1.94
3368 3455 2.040278 AGGCAAGCTTGTGGAGTGATTA 59.960 45.455 26.55 0.00 0.00 1.75
3477 3564 4.878397 CCCAAAAGCTCTTATACACTCCAG 59.122 45.833 0.00 0.00 0.00 3.86
3521 3615 6.983906 AGACCTGAAAAGAATGAAAACCAT 57.016 33.333 0.00 0.00 36.99 3.55
3530 3624 5.449553 AGGTTGACAAGACCTGAAAAGAAT 58.550 37.500 0.00 0.00 45.59 2.40
3709 3803 5.071923 GGCAGACCTAGTTATATTTGGGAGT 59.928 44.000 0.00 0.00 0.00 3.85
3711 3805 4.972568 TGGCAGACCTAGTTATATTTGGGA 59.027 41.667 0.00 0.00 36.63 4.37
3720 3814 6.170506 CACAAGTAATTGGCAGACCTAGTTA 58.829 40.000 7.93 0.00 36.63 2.24
3721 3815 5.003804 CACAAGTAATTGGCAGACCTAGTT 58.996 41.667 7.93 0.00 36.63 2.24
3770 3864 5.880887 CACTAACTTCCTTGGGAGAATTACC 59.119 44.000 1.27 0.00 31.21 2.85
3897 3995 6.889177 TGAGACATTATTTGATTGCTTGGGTA 59.111 34.615 0.00 0.00 0.00 3.69
4102 4201 5.392165 GCAATAGCAACATTTACGTAACCCA 60.392 40.000 7.70 0.00 41.58 4.51
4355 4482 2.864343 CCAATCGGAATACTCAACGGAC 59.136 50.000 0.00 0.00 0.00 4.79
4570 4801 9.713740 CTTTCAGAGACATAGCAATTTGATTAC 57.286 33.333 0.00 0.00 0.00 1.89
4744 4981 9.630098 CTAACTGAACATATTGCAAAACATTCT 57.370 29.630 1.71 0.00 0.00 2.40
4948 5193 4.843728 TCAACATGTATGGAGAAAGGTCC 58.156 43.478 0.00 0.00 37.10 4.46
4960 5205 4.581824 GCCACCTCATCATTCAACATGTAT 59.418 41.667 0.00 0.00 0.00 2.29
4962 5207 2.756760 GCCACCTCATCATTCAACATGT 59.243 45.455 0.00 0.00 0.00 3.21
5153 5400 4.646492 AGCCCTTGATCAAACATATGGTTC 59.354 41.667 9.88 0.00 39.29 3.62
5336 5589 3.433306 ACCATTGCCAGCACTTTAGTA 57.567 42.857 0.00 0.00 0.00 1.82
5576 5829 3.620488 ACTGAGGAAGCACACTGAAAAA 58.380 40.909 0.00 0.00 0.00 1.94
5657 5913 7.620880 ACTAAACCAACAGCACATAAGAGATA 58.379 34.615 0.00 0.00 0.00 1.98
5663 5919 6.001460 AGCTAACTAAACCAACAGCACATAA 58.999 36.000 0.00 0.00 0.00 1.90
6110 6367 6.375455 TCTTCTCAAGATGGCAAATAAGGTTC 59.625 38.462 0.00 0.00 31.20 3.62
6144 6401 7.214467 TGTCACCAAGGAAGATGTAATTTTC 57.786 36.000 0.00 0.00 36.76 2.29
6145 6402 7.595819 TTGTCACCAAGGAAGATGTAATTTT 57.404 32.000 0.00 0.00 0.00 1.82
6693 6971 2.678336 GCCTTTGTACCGAATCTGAAGG 59.322 50.000 0.00 0.00 36.21 3.46
6869 7147 4.351054 CCGGAGCAGGGCCAAGTT 62.351 66.667 6.18 0.00 0.00 2.66
6912 7190 6.194796 TCAACATCTAAAGTAATTGCAGGC 57.805 37.500 0.00 0.00 0.00 4.85
7142 7493 7.502226 ACAATCAGAACAATCAACACCTTAAGA 59.498 33.333 3.36 0.00 0.00 2.10
7157 7508 3.897239 ACCTCACCAAACAATCAGAACA 58.103 40.909 0.00 0.00 0.00 3.18
7207 7558 6.353323 TCTCAAAAACTGTACCAGTGAATGA 58.647 36.000 0.00 2.72 44.62 2.57
7247 7598 1.002366 CTGCTATTCACACCGAGCAC 58.998 55.000 0.00 0.00 39.93 4.40
7270 7621 4.154347 GTCTGAGGCTGCGGGGAG 62.154 72.222 0.00 0.00 0.00 4.30
7280 7631 3.260380 AGTTCAGTCTCCAATGTCTGAGG 59.740 47.826 0.00 0.00 38.03 3.86
7355 7706 4.445452 AATAACTTGCCATGCAGACAAG 57.555 40.909 19.14 19.14 44.98 3.16
7366 7717 3.257127 TGCCCACAACTAAATAACTTGCC 59.743 43.478 0.00 0.00 0.00 4.52
7373 7724 2.091541 GCAGCTGCCCACAACTAAATA 58.908 47.619 28.76 0.00 34.31 1.40
7487 7838 6.975772 GTCTATAAAAACACAAGCAACAACCA 59.024 34.615 0.00 0.00 0.00 3.67
7512 7863 1.156736 GGTCAGAAACACCGGACATG 58.843 55.000 9.46 0.00 32.00 3.21
7587 7938 1.394917 GCTTTCTCCATACACACTGCG 59.605 52.381 0.00 0.00 0.00 5.18
7598 7949 3.795688 ACATCTTTGAGGCTTTCTCCA 57.204 42.857 0.00 0.00 41.76 3.86
7610 7961 6.634805 TCTAAGTCTGCCTCTAACATCTTTG 58.365 40.000 0.00 0.00 0.00 2.77
7611 7962 6.859112 TCTAAGTCTGCCTCTAACATCTTT 57.141 37.500 0.00 0.00 0.00 2.52
7623 7974 2.094762 TTTCGGCTTCTAAGTCTGCC 57.905 50.000 0.00 0.00 41.76 4.85
7628 7979 4.819630 TGTTGTGATTTTCGGCTTCTAAGT 59.180 37.500 0.00 0.00 0.00 2.24
7712 8065 1.825622 TGCATCCGCACCACAAACA 60.826 52.632 0.00 0.00 45.36 2.83
7774 8127 2.210961 AGATCGACAATGCATGCTCAG 58.789 47.619 20.33 10.57 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.