Multiple sequence alignment - TraesCS3A01G176400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G176400 chr3A 100.000 4889 0 0 1 4889 197432214 197437102 0.000000e+00 9029.0
1 TraesCS3A01G176400 chr3D 93.699 3317 146 31 651 3941 169788806 169792085 0.000000e+00 4909.0
2 TraesCS3A01G176400 chr3D 95.500 200 6 2 4148 4347 169792093 169792289 2.840000e-82 316.0
3 TraesCS3A01G176400 chr3D 92.453 212 14 2 133 344 169788223 169788432 7.950000e-78 302.0
4 TraesCS3A01G176400 chr3D 94.767 172 6 2 3934 4103 486424779 486424949 1.040000e-66 265.0
5 TraesCS3A01G176400 chr3D 95.070 142 7 0 6 147 169744299 169744440 1.770000e-54 224.0
6 TraesCS3A01G176400 chr3D 77.994 309 62 5 342 648 90832126 90831822 6.460000e-44 189.0
7 TraesCS3A01G176400 chr3D 83.529 170 27 1 470 639 529882307 529882139 1.820000e-34 158.0
8 TraesCS3A01G176400 chr3D 84.444 135 17 4 342 475 556623859 556623990 3.970000e-26 130.0
9 TraesCS3A01G176400 chr3B 94.809 3063 97 29 889 3938 244658513 244661526 0.000000e+00 4719.0
10 TraesCS3A01G176400 chr3B 93.659 757 24 7 4148 4889 244661534 244662281 0.000000e+00 1110.0
11 TraesCS3A01G176400 chr3B 92.179 179 14 0 3931 4109 252358617 252358439 2.260000e-63 254.0
12 TraesCS3A01G176400 chr3B 78.065 310 56 8 348 648 564761988 564762294 8.360000e-43 185.0
13 TraesCS3A01G176400 chr3B 90.588 85 8 0 52 136 244627570 244627654 4.000000e-21 113.0
14 TraesCS3A01G176400 chr7B 93.617 752 26 8 4148 4889 568391098 568390359 0.000000e+00 1103.0
15 TraesCS3A01G176400 chr4A 96.988 166 4 1 3938 4103 199801274 199801110 1.340000e-70 278.0
16 TraesCS3A01G176400 chr4A 79.688 128 19 6 351 473 133858558 133858433 8.720000e-13 86.1
17 TraesCS3A01G176400 chr1B 95.322 171 8 0 3933 4103 183877191 183877361 6.240000e-69 272.0
18 TraesCS3A01G176400 chr4B 95.266 169 8 0 3935 4103 483266372 483266540 8.070000e-68 268.0
19 TraesCS3A01G176400 chr4B 77.670 309 64 4 342 648 40418402 40418707 3.010000e-42 183.0
20 TraesCS3A01G176400 chr6A 96.296 162 6 0 3942 4103 73573750 73573911 2.900000e-67 267.0
21 TraesCS3A01G176400 chr2A 96.296 162 6 0 3942 4103 608038751 608038590 2.900000e-67 267.0
22 TraesCS3A01G176400 chr2A 81.553 103 18 1 651 753 159074019 159073918 3.140000e-12 84.2
23 TraesCS3A01G176400 chr2A 78.378 111 20 4 236 344 179820464 179820572 8.780000e-08 69.4
24 TraesCS3A01G176400 chr2B 94.675 169 9 0 3935 4103 291855000 291855168 3.750000e-66 263.0
25 TraesCS3A01G176400 chr2D 95.679 162 7 0 3942 4103 56540995 56541156 1.350000e-65 261.0
26 TraesCS3A01G176400 chr2D 76.642 274 46 16 388 648 572048598 572048330 8.540000e-28 135.0
27 TraesCS3A01G176400 chr4D 79.153 307 53 6 351 647 354115321 354115016 8.300000e-48 202.0
28 TraesCS3A01G176400 chr7D 78.317 309 53 7 351 648 469225345 469225040 2.320000e-43 187.0
29 TraesCS3A01G176400 chr5D 84.530 181 25 3 469 648 2134493 2134671 5.030000e-40 176.0
30 TraesCS3A01G176400 chr1A 77.603 317 50 12 348 650 570262358 570262667 6.510000e-39 172.0
31 TraesCS3A01G176400 chr1A 92.593 54 3 1 651 704 424238349 424238401 5.250000e-10 76.8
32 TraesCS3A01G176400 chr6D 76.431 297 63 6 339 633 163941051 163941342 2.360000e-33 154.0
33 TraesCS3A01G176400 chr6D 79.208 101 13 6 246 345 434320063 434319970 4.090000e-06 63.9
34 TraesCS3A01G176400 chrUn 87.255 102 13 0 342 443 49828857 49828958 3.090000e-22 117.0
35 TraesCS3A01G176400 chr5A 79.720 143 27 2 335 475 614256787 614256929 8.660000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G176400 chr3A 197432214 197437102 4888 False 9029.000000 9029 100.000 1 4889 1 chr3A.!!$F1 4888
1 TraesCS3A01G176400 chr3D 169788223 169792289 4066 False 1842.333333 4909 93.884 133 4347 3 chr3D.!!$F4 4214
2 TraesCS3A01G176400 chr3B 244658513 244662281 3768 False 2914.500000 4719 94.234 889 4889 2 chr3B.!!$F3 4000
3 TraesCS3A01G176400 chr7B 568390359 568391098 739 True 1103.000000 1103 93.617 4148 4889 1 chr7B.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.037232 GTGCTAGGGTTTCTCGTGCT 60.037 55.0 0.0 0.0 0.00 4.40 F
652 683 0.103937 CGATGAGGGAGAGGCAAGTC 59.896 60.0 0.0 0.0 0.00 3.01 F
1493 1569 0.106708 TTCAAGCACCGTTCTCTGCT 59.893 50.0 0.0 0.0 45.92 4.24 F
1902 1985 0.192566 TGTTCTACCTGTGTCCCCCT 59.807 55.0 0.0 0.0 0.00 4.79 F
1904 1987 0.546747 TTCTACCTGTGTCCCCCTGG 60.547 60.0 0.0 0.0 0.00 4.45 F
3751 3851 0.609957 TGCAGGATCAAACAGCCAGG 60.610 55.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1414 1487 0.034198 TGTGGCATCGAAGACGGAAA 59.966 50.000 0.0 0.0 42.51 3.13 R
1519 1597 0.179056 TAAGCTAGACGGCCCATTGC 60.179 55.000 0.0 0.0 40.16 3.56 R
3163 3248 1.000955 TCCCTCAACTTCTGTCTTCGC 59.999 52.381 0.0 0.0 0.00 4.70 R
3870 3970 0.179073 ATCACTGATTTCCCTCGGCG 60.179 55.000 0.0 0.0 0.00 6.46 R
3871 3971 1.303309 CATCACTGATTTCCCTCGGC 58.697 55.000 0.0 0.0 0.00 5.54 R
4662 4777 2.197324 CGAGGAGGAGGAGGAGGG 59.803 72.222 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.595823 CTTTTGATCCCTCGAACTATTAAGTAA 57.404 33.333 0.00 0.00 33.75 2.24
27 28 9.595823 TTTTGATCCCTCGAACTATTAAGTAAG 57.404 33.333 0.00 0.00 33.75 2.34
28 29 8.529424 TTGATCCCTCGAACTATTAAGTAAGA 57.471 34.615 0.00 0.00 33.75 2.10
29 30 8.529424 TGATCCCTCGAACTATTAAGTAAGAA 57.471 34.615 0.00 0.00 33.75 2.52
30 31 8.974238 TGATCCCTCGAACTATTAAGTAAGAAA 58.026 33.333 0.00 0.00 33.75 2.52
31 32 9.984190 GATCCCTCGAACTATTAAGTAAGAAAT 57.016 33.333 0.00 0.00 33.75 2.17
33 34 9.595823 TCCCTCGAACTATTAAGTAAGAAATTG 57.404 33.333 0.00 0.00 33.75 2.32
34 35 9.379791 CCCTCGAACTATTAAGTAAGAAATTGT 57.620 33.333 0.00 0.00 33.75 2.71
47 48 9.860898 AAGTAAGAAATTGTTAATGGAATCAGC 57.139 29.630 0.00 0.00 0.00 4.26
48 49 8.470002 AGTAAGAAATTGTTAATGGAATCAGCC 58.530 33.333 0.00 0.00 0.00 4.85
49 50 5.894807 AGAAATTGTTAATGGAATCAGCCG 58.105 37.500 0.00 0.00 0.00 5.52
50 51 5.418840 AGAAATTGTTAATGGAATCAGCCGT 59.581 36.000 0.00 0.00 0.00 5.68
51 52 5.659440 AATTGTTAATGGAATCAGCCGTT 57.341 34.783 0.00 0.00 40.22 4.44
52 53 6.767524 AATTGTTAATGGAATCAGCCGTTA 57.232 33.333 0.00 0.00 38.15 3.18
53 54 6.959639 ATTGTTAATGGAATCAGCCGTTAT 57.040 33.333 0.00 0.00 38.74 1.89
54 55 5.749596 TGTTAATGGAATCAGCCGTTATG 57.250 39.130 0.00 0.00 38.74 1.90
55 56 5.189928 TGTTAATGGAATCAGCCGTTATGT 58.810 37.500 0.00 0.00 38.74 2.29
56 57 6.350103 TGTTAATGGAATCAGCCGTTATGTA 58.650 36.000 0.00 0.00 38.74 2.29
57 58 6.259167 TGTTAATGGAATCAGCCGTTATGTAC 59.741 38.462 0.00 0.00 38.74 2.90
58 59 3.188159 TGGAATCAGCCGTTATGTACC 57.812 47.619 0.00 0.00 0.00 3.34
59 60 2.158871 TGGAATCAGCCGTTATGTACCC 60.159 50.000 0.00 0.00 0.00 3.69
60 61 2.158871 GGAATCAGCCGTTATGTACCCA 60.159 50.000 0.00 0.00 0.00 4.51
61 62 2.910688 ATCAGCCGTTATGTACCCAG 57.089 50.000 0.00 0.00 0.00 4.45
62 63 1.855295 TCAGCCGTTATGTACCCAGA 58.145 50.000 0.00 0.00 0.00 3.86
63 64 2.394632 TCAGCCGTTATGTACCCAGAT 58.605 47.619 0.00 0.00 0.00 2.90
64 65 2.364324 TCAGCCGTTATGTACCCAGATC 59.636 50.000 0.00 0.00 0.00 2.75
65 66 2.102420 CAGCCGTTATGTACCCAGATCA 59.898 50.000 0.00 0.00 0.00 2.92
66 67 2.769663 AGCCGTTATGTACCCAGATCAA 59.230 45.455 0.00 0.00 0.00 2.57
67 68 3.131396 GCCGTTATGTACCCAGATCAAG 58.869 50.000 0.00 0.00 0.00 3.02
68 69 3.431766 GCCGTTATGTACCCAGATCAAGT 60.432 47.826 0.00 0.00 0.00 3.16
69 70 4.119862 CCGTTATGTACCCAGATCAAGTG 58.880 47.826 0.00 0.00 0.00 3.16
70 71 3.555956 CGTTATGTACCCAGATCAAGTGC 59.444 47.826 0.00 0.00 0.00 4.40
71 72 4.513442 GTTATGTACCCAGATCAAGTGCA 58.487 43.478 0.00 0.00 0.00 4.57
72 73 3.719268 ATGTACCCAGATCAAGTGCAA 57.281 42.857 0.00 0.00 29.89 4.08
73 74 2.778299 TGTACCCAGATCAAGTGCAAC 58.222 47.619 0.00 0.00 0.00 4.17
74 75 2.105649 TGTACCCAGATCAAGTGCAACA 59.894 45.455 0.00 0.00 41.43 3.33
75 76 1.901591 ACCCAGATCAAGTGCAACAG 58.098 50.000 0.00 0.00 41.43 3.16
76 77 0.524862 CCCAGATCAAGTGCAACAGC 59.475 55.000 0.00 0.00 41.43 4.40
77 78 1.241165 CCAGATCAAGTGCAACAGCA 58.759 50.000 0.00 0.00 41.43 4.41
78 79 1.610038 CCAGATCAAGTGCAACAGCAA 59.390 47.619 0.00 0.00 41.43 3.91
79 80 2.606308 CCAGATCAAGTGCAACAGCAAC 60.606 50.000 0.00 0.00 41.43 4.17
80 81 2.033675 CAGATCAAGTGCAACAGCAACA 59.966 45.455 0.00 0.00 41.43 3.33
81 82 2.689471 AGATCAAGTGCAACAGCAACAA 59.311 40.909 0.00 0.00 41.43 2.83
82 83 3.319972 AGATCAAGTGCAACAGCAACAAT 59.680 39.130 0.00 0.00 41.43 2.71
83 84 3.523606 TCAAGTGCAACAGCAACAATT 57.476 38.095 0.00 0.00 41.43 2.32
84 85 3.446799 TCAAGTGCAACAGCAACAATTC 58.553 40.909 0.00 0.00 41.43 2.17
85 86 3.130869 TCAAGTGCAACAGCAACAATTCT 59.869 39.130 0.00 0.00 41.43 2.40
86 87 3.806625 AGTGCAACAGCAACAATTCTT 57.193 38.095 0.00 0.00 41.43 2.52
87 88 4.916983 AGTGCAACAGCAACAATTCTTA 57.083 36.364 0.00 0.00 41.43 2.10
88 89 4.610945 AGTGCAACAGCAACAATTCTTAC 58.389 39.130 0.00 0.00 41.43 2.34
89 90 4.339247 AGTGCAACAGCAACAATTCTTACT 59.661 37.500 0.00 0.00 41.43 2.24
90 91 5.043248 GTGCAACAGCAACAATTCTTACTT 58.957 37.500 0.00 0.00 40.49 2.24
91 92 6.039270 AGTGCAACAGCAACAATTCTTACTTA 59.961 34.615 0.00 0.00 41.43 2.24
92 93 6.863126 GTGCAACAGCAACAATTCTTACTTAT 59.137 34.615 0.00 0.00 40.49 1.73
93 94 8.020819 GTGCAACAGCAACAATTCTTACTTATA 58.979 33.333 0.00 0.00 40.49 0.98
94 95 8.572185 TGCAACAGCAACAATTCTTACTTATAA 58.428 29.630 0.00 0.00 34.85 0.98
95 96 8.850452 GCAACAGCAACAATTCTTACTTATAAC 58.150 33.333 0.00 0.00 0.00 1.89
96 97 9.891828 CAACAGCAACAATTCTTACTTATAACA 57.108 29.630 0.00 0.00 0.00 2.41
208 209 0.037232 GTGCTAGGGTTTCTCGTGCT 60.037 55.000 0.00 0.00 0.00 4.40
209 210 0.685097 TGCTAGGGTTTCTCGTGCTT 59.315 50.000 0.00 0.00 0.00 3.91
217 218 0.816018 TTTCTCGTGCTTTCCGCCAA 60.816 50.000 0.00 0.00 38.05 4.52
219 220 2.203084 TCGTGCTTTCCGCCAACA 60.203 55.556 0.00 0.00 38.05 3.33
243 244 2.752358 CTGGCCTGCCTTGTCTCA 59.248 61.111 9.97 0.00 36.94 3.27
261 262 2.941064 CTCATGTGGTCTTAGTGCCATG 59.059 50.000 0.00 0.00 37.09 3.66
267 268 1.407437 GGTCTTAGTGCCATGGAGGTG 60.407 57.143 18.40 0.00 40.61 4.00
268 269 0.911769 TCTTAGTGCCATGGAGGTGG 59.088 55.000 18.40 0.08 42.35 4.61
276 277 0.107017 CCATGGAGGTGGTGTGGATC 60.107 60.000 5.56 0.00 34.46 3.36
279 280 1.200760 TGGAGGTGGTGTGGATCCTG 61.201 60.000 14.23 0.00 0.00 3.86
282 283 0.693049 AGGTGGTGTGGATCCTGAAC 59.307 55.000 14.23 8.30 0.00 3.18
289 290 1.780309 TGTGGATCCTGAACCCTTGTT 59.220 47.619 14.23 0.00 37.42 2.83
292 293 1.075536 GGATCCTGAACCCTTGTTGGT 59.924 52.381 3.84 0.00 41.55 3.67
294 295 0.923358 TCCTGAACCCTTGTTGGTGT 59.077 50.000 0.00 0.00 39.05 4.16
301 302 1.903404 CCTTGTTGGTGTGAGGGCC 60.903 63.158 0.00 0.00 0.00 5.80
344 345 5.355910 TGAGTTTTGTTAGGGTTTGTGTCTC 59.644 40.000 0.00 0.00 0.00 3.36
345 346 5.506708 AGTTTTGTTAGGGTTTGTGTCTCT 58.493 37.500 0.00 0.00 0.00 3.10
346 347 6.655930 AGTTTTGTTAGGGTTTGTGTCTCTA 58.344 36.000 0.00 0.00 0.00 2.43
347 348 7.114095 AGTTTTGTTAGGGTTTGTGTCTCTAA 58.886 34.615 0.00 0.00 0.00 2.10
348 349 7.612633 AGTTTTGTTAGGGTTTGTGTCTCTAAA 59.387 33.333 0.00 0.00 0.00 1.85
349 350 6.930667 TTGTTAGGGTTTGTGTCTCTAAAC 57.069 37.500 0.00 0.00 36.35 2.01
350 351 5.991861 TGTTAGGGTTTGTGTCTCTAAACA 58.008 37.500 0.00 0.00 38.26 2.83
351 352 6.597562 TGTTAGGGTTTGTGTCTCTAAACAT 58.402 36.000 0.00 0.00 38.26 2.71
369 400 3.197983 ACATGGAATAAGGTTCTCCCCA 58.802 45.455 0.00 0.00 0.00 4.96
372 403 1.214673 GGAATAAGGTTCTCCCCACCC 59.785 57.143 0.00 0.00 34.44 4.61
375 406 0.195096 TAAGGTTCTCCCCACCCAGT 59.805 55.000 0.00 0.00 34.44 4.00
387 418 2.365635 CCCAGTCTCCATCCCGGT 60.366 66.667 0.00 0.00 35.57 5.28
391 422 0.686441 CAGTCTCCATCCCGGTGGTA 60.686 60.000 10.70 0.00 40.27 3.25
405 436 3.181465 CCGGTGGTACTTCTAGCATCATT 60.181 47.826 0.00 0.00 31.84 2.57
413 444 1.510492 TCTAGCATCATTGGAGGGCA 58.490 50.000 0.00 0.00 31.65 5.36
441 472 0.173481 TTTGTCTCCTGCGGATCTCG 59.827 55.000 0.00 0.00 42.76 4.04
453 484 0.592148 GGATCTCGCGGTAGTCGATT 59.408 55.000 6.13 0.00 42.43 3.34
489 520 3.487209 GGTGGATCTAGTCTTCGTTCGTC 60.487 52.174 0.00 0.00 0.00 4.20
491 522 4.569966 GTGGATCTAGTCTTCGTTCGTCTA 59.430 45.833 0.00 0.00 0.00 2.59
493 524 6.423302 GTGGATCTAGTCTTCGTTCGTCTATA 59.577 42.308 0.00 0.00 0.00 1.31
529 560 7.883391 ATATGTCCGGATACTTTCGATCTAT 57.117 36.000 7.81 0.00 0.00 1.98
541 572 6.815089 ACTTTCGATCTATGCTTCTCTTCAT 58.185 36.000 0.00 0.00 0.00 2.57
545 576 3.377346 TCTATGCTTCTCTTCATCGGC 57.623 47.619 0.00 0.00 0.00 5.54
547 578 0.461548 ATGCTTCTCTTCATCGGCGA 59.538 50.000 13.87 13.87 0.00 5.54
549 580 0.458543 GCTTCTCTTCATCGGCGACA 60.459 55.000 13.76 0.00 0.00 4.35
554 585 2.094234 TCTCTTCATCGGCGACAATTGA 60.094 45.455 13.76 9.63 0.00 2.57
568 599 3.338249 ACAATTGATGTTCTAGTGCGCT 58.662 40.909 13.59 4.58 40.06 5.92
590 621 3.382048 GTCCTATAGGGCCTTAACACG 57.618 52.381 18.97 0.00 32.49 4.49
600 631 2.614983 GGCCTTAACACGACAACTTTCA 59.385 45.455 0.00 0.00 0.00 2.69
604 635 4.809426 CCTTAACACGACAACTTTCAGACT 59.191 41.667 0.00 0.00 0.00 3.24
614 645 6.512903 CGACAACTTTCAGACTGTCTACTACA 60.513 42.308 10.47 0.00 36.80 2.74
628 659 2.445682 ACTACAACAAGGTTTGCCCA 57.554 45.000 0.00 0.00 34.66 5.36
629 660 2.741145 ACTACAACAAGGTTTGCCCAA 58.259 42.857 0.00 0.00 34.66 4.12
635 666 0.821711 CAAGGTTTGCCCAACTCCGA 60.822 55.000 0.00 0.00 35.46 4.55
648 679 2.689813 TCCGATGAGGGAGAGGCA 59.310 61.111 0.00 0.00 41.52 4.75
650 681 1.045350 TCCGATGAGGGAGAGGCAAG 61.045 60.000 0.00 0.00 41.52 4.01
651 682 1.333636 CCGATGAGGGAGAGGCAAGT 61.334 60.000 0.00 0.00 35.97 3.16
652 683 0.103937 CGATGAGGGAGAGGCAAGTC 59.896 60.000 0.00 0.00 0.00 3.01
653 684 1.198713 GATGAGGGAGAGGCAAGTCA 58.801 55.000 0.00 0.00 0.00 3.41
671 742 2.677337 GTCACTAGGTGGTCTACGAGAC 59.323 54.545 0.00 6.50 44.32 3.36
688 759 8.701895 TCTACGAGACCTGGATGTAAATTTTAT 58.298 33.333 0.00 0.00 0.00 1.40
696 767 8.531146 ACCTGGATGTAAATTTTATTTCTGGTG 58.469 33.333 0.00 0.00 0.00 4.17
710 781 8.934023 TTATTTCTGGTGTTCTTTGTCCTATT 57.066 30.769 0.00 0.00 0.00 1.73
715 786 7.004086 TCTGGTGTTCTTTGTCCTATTTTGAT 58.996 34.615 0.00 0.00 0.00 2.57
803 874 9.991388 CATTTGAAAGAAAAAGCAAAAGATTCA 57.009 25.926 0.00 0.00 34.38 2.57
839 910 3.713826 TTTGAGGGATCGGCTAAAAGT 57.286 42.857 0.00 0.00 0.00 2.66
850 921 6.074249 GGATCGGCTAAAAGTTTAATCTCTCG 60.074 42.308 0.00 0.00 0.00 4.04
920 992 0.597637 ACAGCGGAAGAACAGTCGTG 60.598 55.000 0.00 0.00 0.00 4.35
959 1032 3.303132 CGAAGGAAACACCGAAACAGAAG 60.303 47.826 0.00 0.00 44.74 2.85
1176 1249 0.748729 CTCCTCGCTCCGTTCTACCT 60.749 60.000 0.00 0.00 0.00 3.08
1200 1273 0.320421 TCTTTCTCTTTGACCGGCGG 60.320 55.000 27.06 27.06 0.00 6.13
1228 1301 2.227089 ATTGAGACCACTCCGTCGCC 62.227 60.000 0.00 0.00 41.99 5.54
1263 1336 1.210478 CCAACTCCCCTGATCGATGTT 59.790 52.381 0.54 0.00 0.00 2.71
1320 1393 2.109181 CTCCTCCCCCGAATTCGC 59.891 66.667 22.36 0.00 38.18 4.70
1414 1487 0.607489 GAGTTGCTGGGCATGACTGT 60.607 55.000 0.00 0.00 38.76 3.55
1493 1569 0.106708 TTCAAGCACCGTTCTCTGCT 59.893 50.000 0.00 0.00 45.92 4.24
1519 1597 4.807304 GGAGCACTTGCCAAATGAATAATG 59.193 41.667 0.00 0.00 43.38 1.90
1523 1601 5.065474 GCACTTGCCAAATGAATAATGCAAT 59.935 36.000 0.00 0.00 37.98 3.56
1529 1607 3.389925 AATGAATAATGCAATGGGCCG 57.610 42.857 0.00 0.00 43.89 6.13
1537 1615 1.452108 GCAATGGGCCGTCTAGCTT 60.452 57.895 0.00 0.00 36.11 3.74
1547 1626 3.426323 GCCGTCTAGCTTAAAAACATGC 58.574 45.455 0.00 0.00 0.00 4.06
1559 1638 4.708726 AAAAACATGCATGAGTCTAGCC 57.291 40.909 32.75 0.00 0.00 3.93
1581 1660 4.990426 CCAAAAATGGTTGTAGGCTGAAAG 59.010 41.667 0.00 0.00 0.00 2.62
1673 1753 8.918961 TCGTTTGTTTTCTGTTGAACATAATT 57.081 26.923 0.00 0.00 35.85 1.40
1741 1824 9.436957 TGAAGTCAATCTTTGGAACTAATACTC 57.563 33.333 0.00 0.00 36.40 2.59
1742 1825 8.794335 AAGTCAATCTTTGGAACTAATACTCC 57.206 34.615 0.00 0.00 31.57 3.85
1743 1826 8.152023 AGTCAATCTTTGGAACTAATACTCCT 57.848 34.615 0.00 0.00 32.51 3.69
1788 1871 9.193806 ACTTCAGATATGGCAGATTGTTTAATT 57.806 29.630 0.00 0.00 0.00 1.40
1814 1897 1.480498 GGGAAGAAGGCCACTCCAAAA 60.480 52.381 5.01 0.00 37.29 2.44
1902 1985 0.192566 TGTTCTACCTGTGTCCCCCT 59.807 55.000 0.00 0.00 0.00 4.79
1903 1986 0.613777 GTTCTACCTGTGTCCCCCTG 59.386 60.000 0.00 0.00 0.00 4.45
1904 1987 0.546747 TTCTACCTGTGTCCCCCTGG 60.547 60.000 0.00 0.00 0.00 4.45
1905 1988 2.609610 TACCTGTGTCCCCCTGGC 60.610 66.667 0.00 0.00 0.00 4.85
2027 2110 1.614903 CTGTCAATTCCAGCCTTGCAA 59.385 47.619 0.00 0.00 0.00 4.08
2109 2192 1.082117 GGTGATCCTGTACGTTGCCG 61.082 60.000 0.00 0.00 40.83 5.69
2139 2222 3.545624 GCTGCTCAATTCAGTATGCTTCG 60.546 47.826 0.00 0.00 34.76 3.79
2161 2244 1.462616 TGAATGCGGTCCTGATTTGG 58.537 50.000 0.00 0.00 0.00 3.28
2163 2246 1.322538 AATGCGGTCCTGATTTGGCC 61.323 55.000 0.00 0.00 0.00 5.36
2193 2276 3.439857 TCCCTTATGCAGTTGCTTTCT 57.560 42.857 5.62 0.00 42.66 2.52
2349 2432 4.002906 TGACAGCATTTCGGTAGTTTCT 57.997 40.909 0.00 0.00 0.00 2.52
2350 2433 3.745975 TGACAGCATTTCGGTAGTTTCTG 59.254 43.478 0.00 0.00 0.00 3.02
2475 2558 7.497249 GTCAATGCACTAGAATAGGAGAACATT 59.503 37.037 0.00 0.00 44.97 2.71
2762 2845 1.874231 GTCGACGAGCTGGATCTATCA 59.126 52.381 1.44 0.00 0.00 2.15
2905 2988 6.754675 TGCTTGACAATTGATATGCTGATTTG 59.245 34.615 13.59 0.00 0.00 2.32
2939 3022 4.970662 TGCACCTATGAAATGAAAGCTC 57.029 40.909 0.00 0.00 0.00 4.09
3072 3157 1.337817 CCGTGTCTCTGAAAGCGTCG 61.338 60.000 0.00 0.00 0.00 5.12
3163 3248 7.708752 ACCATAGCTAAGAGAAAATCTTCTTCG 59.291 37.037 0.00 0.00 45.50 3.79
3335 3422 4.472691 TGAGTCTTCACGCAATTTTCAG 57.527 40.909 0.00 0.00 27.98 3.02
3397 3484 2.365293 AGATTGCAACACCAAAAGTCCC 59.635 45.455 0.00 0.00 0.00 4.46
3521 3609 4.252878 TCAGTGTTACCATACATGCTGTG 58.747 43.478 0.00 0.00 0.00 3.66
3530 3618 8.846211 GTTACCATACATGCTGTGGTTATATTT 58.154 33.333 18.72 0.10 43.44 1.40
3536 3624 9.845740 ATACATGCTGTGGTTATATTTGTTCTA 57.154 29.630 0.00 0.00 0.00 2.10
3541 3629 8.046708 TGCTGTGGTTATATTTGTTCTAGTCAT 58.953 33.333 0.00 0.00 0.00 3.06
3587 3675 8.479689 TCAGTATAATCCAGAAAAATGACCGTA 58.520 33.333 0.00 0.00 0.00 4.02
3608 3696 4.342862 ACATCCGGAGACTGATAATTGG 57.657 45.455 11.34 0.00 31.96 3.16
3613 3701 4.224147 TCCGGAGACTGATAATTGGTTTCA 59.776 41.667 0.00 0.00 0.00 2.69
3616 3704 5.586243 CGGAGACTGATAATTGGTTTCACAT 59.414 40.000 0.00 0.00 0.00 3.21
3617 3705 6.457392 CGGAGACTGATAATTGGTTTCACATG 60.457 42.308 0.00 0.00 0.00 3.21
3751 3851 0.609957 TGCAGGATCAAACAGCCAGG 60.610 55.000 0.00 0.00 0.00 4.45
3756 3856 1.457346 GATCAAACAGCCAGGACAGG 58.543 55.000 0.00 0.00 0.00 4.00
3787 3887 5.163652 GCTGCTGAAAAACGGGTATCTAATT 60.164 40.000 0.00 0.00 0.00 1.40
3804 3904 5.369833 TCTAATTGTCGGTTGAAACAGGAA 58.630 37.500 0.00 0.00 0.00 3.36
3834 3934 1.037579 GGCTTGCCCACCCATCTTAC 61.038 60.000 0.00 0.00 0.00 2.34
3837 3937 1.281867 CTTGCCCACCCATCTTACAGA 59.718 52.381 0.00 0.00 0.00 3.41
3868 3968 4.225942 TGCAGAGTATTCTTGATTCCTGGT 59.774 41.667 0.00 0.00 0.00 4.00
3870 3970 5.295540 GCAGAGTATTCTTGATTCCTGGTTC 59.704 44.000 0.00 0.00 0.00 3.62
3871 3971 5.521735 CAGAGTATTCTTGATTCCTGGTTCG 59.478 44.000 0.00 0.00 0.00 3.95
3872 3972 4.192317 AGTATTCTTGATTCCTGGTTCGC 58.808 43.478 0.00 0.00 0.00 4.70
3929 4029 6.846350 CGAGTAGCATTTCTTTCAATCCTTT 58.154 36.000 0.00 0.00 0.00 3.11
3931 4031 6.928520 AGTAGCATTTCTTTCAATCCTTTGG 58.071 36.000 0.00 0.00 33.44 3.28
3934 4034 6.594744 AGCATTTCTTTCAATCCTTTGGTTT 58.405 32.000 0.00 0.00 33.44 3.27
3936 4036 6.293571 GCATTTCTTTCAATCCTTTGGTTTGG 60.294 38.462 7.34 0.00 34.29 3.28
3937 4037 6.552445 TTTCTTTCAATCCTTTGGTTTGGA 57.448 33.333 7.34 0.00 34.29 3.53
3938 4038 6.745794 TTCTTTCAATCCTTTGGTTTGGAT 57.254 33.333 7.34 0.00 44.21 3.41
3939 4039 6.100404 TCTTTCAATCCTTTGGTTTGGATG 57.900 37.500 7.34 2.76 41.76 3.51
3940 4040 5.837979 TCTTTCAATCCTTTGGTTTGGATGA 59.162 36.000 7.34 4.62 41.76 2.92
3941 4041 6.497954 TCTTTCAATCCTTTGGTTTGGATGAT 59.502 34.615 7.34 0.00 41.76 2.45
3942 4042 7.673504 TCTTTCAATCCTTTGGTTTGGATGATA 59.326 33.333 7.34 0.00 41.76 2.15
3943 4043 6.773976 TCAATCCTTTGGTTTGGATGATAC 57.226 37.500 7.34 0.00 41.76 2.24
3944 4044 6.493166 TCAATCCTTTGGTTTGGATGATACT 58.507 36.000 7.34 0.00 41.76 2.12
3945 4045 6.603201 TCAATCCTTTGGTTTGGATGATACTC 59.397 38.462 7.34 0.00 41.76 2.59
3946 4046 4.855340 TCCTTTGGTTTGGATGATACTCC 58.145 43.478 0.00 0.00 35.74 3.85
3947 4047 3.954258 CCTTTGGTTTGGATGATACTCCC 59.046 47.826 0.00 0.00 34.12 4.30
3948 4048 4.325344 CCTTTGGTTTGGATGATACTCCCT 60.325 45.833 0.00 0.00 34.12 4.20
3949 4049 4.503714 TTGGTTTGGATGATACTCCCTC 57.496 45.455 0.00 0.00 34.12 4.30
3950 4050 3.736094 TGGTTTGGATGATACTCCCTCT 58.264 45.455 0.00 0.00 34.12 3.69
3951 4051 3.455910 TGGTTTGGATGATACTCCCTCTG 59.544 47.826 0.00 0.00 34.12 3.35
3952 4052 3.711704 GGTTTGGATGATACTCCCTCTGA 59.288 47.826 0.00 0.00 34.12 3.27
3953 4053 4.349342 GGTTTGGATGATACTCCCTCTGAT 59.651 45.833 0.00 0.00 34.12 2.90
3954 4054 5.512232 GGTTTGGATGATACTCCCTCTGATC 60.512 48.000 0.00 0.00 34.12 2.92
3955 4055 3.784178 TGGATGATACTCCCTCTGATCC 58.216 50.000 0.00 0.00 34.12 3.36
3956 4056 3.404081 TGGATGATACTCCCTCTGATCCT 59.596 47.826 0.00 0.00 34.12 3.24
3957 4057 4.608028 TGGATGATACTCCCTCTGATCCTA 59.392 45.833 0.00 0.00 34.12 2.94
3958 4058 5.076458 TGGATGATACTCCCTCTGATCCTAA 59.924 44.000 0.00 0.00 34.12 2.69
3959 4059 6.019748 GGATGATACTCCCTCTGATCCTAAA 58.980 44.000 0.00 0.00 0.00 1.85
3960 4060 6.671779 GGATGATACTCCCTCTGATCCTAAAT 59.328 42.308 0.00 0.00 0.00 1.40
3961 4061 7.841729 GGATGATACTCCCTCTGATCCTAAATA 59.158 40.741 0.00 0.00 0.00 1.40
3962 4062 9.432982 GATGATACTCCCTCTGATCCTAAATAT 57.567 37.037 0.00 0.00 0.00 1.28
3967 4067 8.658840 ACTCCCTCTGATCCTAAATATAAGTC 57.341 38.462 0.00 0.00 0.00 3.01
3968 4068 8.461033 ACTCCCTCTGATCCTAAATATAAGTCT 58.539 37.037 0.00 0.00 0.00 3.24
3969 4069 9.320295 CTCCCTCTGATCCTAAATATAAGTCTT 57.680 37.037 0.00 0.00 0.00 3.01
3970 4070 9.676129 TCCCTCTGATCCTAAATATAAGTCTTT 57.324 33.333 0.00 0.00 0.00 2.52
3971 4071 9.717942 CCCTCTGATCCTAAATATAAGTCTTTG 57.282 37.037 0.00 0.00 0.00 2.77
3989 4089 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
3990 4090 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
3991 4091 8.254508 GTCTTTGTAGAGATTTCACTATGGACT 58.745 37.037 0.00 0.00 0.00 3.85
3992 4092 9.475620 TCTTTGTAGAGATTTCACTATGGACTA 57.524 33.333 0.00 0.00 0.00 2.59
3993 4093 9.522804 CTTTGTAGAGATTTCACTATGGACTAC 57.477 37.037 0.00 0.00 0.00 2.73
3994 4094 8.589701 TTGTAGAGATTTCACTATGGACTACA 57.410 34.615 0.00 0.00 36.83 2.74
3995 4095 8.768501 TGTAGAGATTTCACTATGGACTACAT 57.231 34.615 0.00 0.00 43.68 2.29
3996 4096 9.862149 TGTAGAGATTTCACTATGGACTACATA 57.138 33.333 0.00 0.00 41.03 2.29
3998 4098 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
3999 4099 7.720074 AGAGATTTCACTATGGACTACATACGA 59.280 37.037 0.00 0.00 41.03 3.43
4000 4100 8.234136 AGATTTCACTATGGACTACATACGAA 57.766 34.615 0.00 0.00 41.03 3.85
4001 4101 8.353684 AGATTTCACTATGGACTACATACGAAG 58.646 37.037 0.00 0.00 41.03 3.79
4002 4102 5.434352 TCACTATGGACTACATACGAAGC 57.566 43.478 0.00 0.00 41.03 3.86
4003 4103 4.885325 TCACTATGGACTACATACGAAGCA 59.115 41.667 0.00 0.00 41.03 3.91
4004 4104 5.358725 TCACTATGGACTACATACGAAGCAA 59.641 40.000 0.00 0.00 41.03 3.91
4005 4105 6.040247 CACTATGGACTACATACGAAGCAAA 58.960 40.000 0.00 0.00 41.03 3.68
4006 4106 6.533723 CACTATGGACTACATACGAAGCAAAA 59.466 38.462 0.00 0.00 41.03 2.44
4007 4107 7.224753 CACTATGGACTACATACGAAGCAAAAT 59.775 37.037 0.00 0.00 41.03 1.82
4008 4108 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
4009 4109 5.483811 TGGACTACATACGAAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
4010 4110 5.935206 TGGACTACATACGAAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
4011 4111 6.597672 TGGACTACATACGAAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
4012 4112 6.907212 GGACTACATACGAAGCAAAATGAATG 59.093 38.462 0.00 0.00 0.00 2.67
4013 4113 7.201609 GGACTACATACGAAGCAAAATGAATGA 60.202 37.037 0.00 0.00 0.00 2.57
4014 4114 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
4015 4115 8.677300 ACTACATACGAAGCAAAATGAATGAAT 58.323 29.630 0.00 0.00 0.00 2.57
4016 4116 7.975866 ACATACGAAGCAAAATGAATGAATC 57.024 32.000 0.00 0.00 0.00 2.52
4017 4117 7.765307 ACATACGAAGCAAAATGAATGAATCT 58.235 30.769 0.00 0.00 0.00 2.40
4018 4118 8.892723 ACATACGAAGCAAAATGAATGAATCTA 58.107 29.630 0.00 0.00 0.00 1.98
4019 4119 9.162793 CATACGAAGCAAAATGAATGAATCTAC 57.837 33.333 0.00 0.00 0.00 2.59
4020 4120 7.144722 ACGAAGCAAAATGAATGAATCTACA 57.855 32.000 0.00 0.00 0.00 2.74
4021 4121 7.023575 ACGAAGCAAAATGAATGAATCTACAC 58.976 34.615 0.00 0.00 0.00 2.90
4022 4122 6.470235 CGAAGCAAAATGAATGAATCTACACC 59.530 38.462 0.00 0.00 0.00 4.16
4023 4123 6.212888 AGCAAAATGAATGAATCTACACCC 57.787 37.500 0.00 0.00 0.00 4.61
4024 4124 5.954150 AGCAAAATGAATGAATCTACACCCT 59.046 36.000 0.00 0.00 0.00 4.34
4025 4125 7.118723 AGCAAAATGAATGAATCTACACCCTA 58.881 34.615 0.00 0.00 0.00 3.53
4026 4126 7.615365 AGCAAAATGAATGAATCTACACCCTAA 59.385 33.333 0.00 0.00 0.00 2.69
4027 4127 8.250332 GCAAAATGAATGAATCTACACCCTAAA 58.750 33.333 0.00 0.00 0.00 1.85
4031 4131 7.333528 TGAATGAATCTACACCCTAAAATGC 57.666 36.000 0.00 0.00 0.00 3.56
4032 4132 6.889177 TGAATGAATCTACACCCTAAAATGCA 59.111 34.615 0.00 0.00 0.00 3.96
4033 4133 7.560991 TGAATGAATCTACACCCTAAAATGCAT 59.439 33.333 0.00 0.00 0.00 3.96
4034 4134 6.942532 TGAATCTACACCCTAAAATGCATC 57.057 37.500 0.00 0.00 0.00 3.91
4035 4135 6.662755 TGAATCTACACCCTAAAATGCATCT 58.337 36.000 0.00 0.00 0.00 2.90
4036 4136 7.801104 TGAATCTACACCCTAAAATGCATCTA 58.199 34.615 0.00 0.00 0.00 1.98
4037 4137 8.439971 TGAATCTACACCCTAAAATGCATCTAT 58.560 33.333 0.00 0.00 0.00 1.98
4038 4138 9.944376 GAATCTACACCCTAAAATGCATCTATA 57.056 33.333 0.00 0.00 0.00 1.31
4044 4144 9.672673 ACACCCTAAAATGCATCTATATACATC 57.327 33.333 0.00 0.00 0.00 3.06
4045 4145 9.113838 CACCCTAAAATGCATCTATATACATCC 57.886 37.037 0.00 0.00 0.00 3.51
4046 4146 7.987458 ACCCTAAAATGCATCTATATACATCCG 59.013 37.037 0.00 0.00 0.00 4.18
4047 4147 7.987458 CCCTAAAATGCATCTATATACATCCGT 59.013 37.037 0.00 0.00 0.00 4.69
4052 4152 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
4053 4153 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
4054 4154 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
4055 4155 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
4056 4156 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
4057 4157 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
4058 4158 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
4059 4159 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
4060 4160 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
4061 4161 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
4062 4162 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
4063 4163 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
4064 4164 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
4065 4165 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
4066 4166 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
4067 4167 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
4068 4168 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
4069 4169 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
4070 4170 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
4071 4171 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
4072 4172 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
4073 4173 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
4074 4174 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
4075 4175 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
4076 4176 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
4077 4177 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
4078 4178 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
4079 4179 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
4096 4196 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4097 4197 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4098 4198 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4099 4199 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4100 4200 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4101 4201 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4102 4202 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4103 4203 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
4104 4204 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
4105 4205 2.905415 TAGGAACGGAGGGAGTACAA 57.095 50.000 0.00 0.00 0.00 2.41
4106 4206 1.264295 AGGAACGGAGGGAGTACAAC 58.736 55.000 0.00 0.00 0.00 3.32
4107 4207 1.203149 AGGAACGGAGGGAGTACAACT 60.203 52.381 0.00 0.00 0.00 3.16
4108 4208 1.622312 GGAACGGAGGGAGTACAACTT 59.378 52.381 0.00 0.00 0.00 2.66
4109 4209 2.612221 GGAACGGAGGGAGTACAACTTG 60.612 54.545 0.00 0.00 0.00 3.16
4110 4210 2.005370 ACGGAGGGAGTACAACTTGA 57.995 50.000 0.00 0.00 0.00 3.02
4111 4211 2.322658 ACGGAGGGAGTACAACTTGAA 58.677 47.619 0.00 0.00 0.00 2.69
4112 4212 2.036862 ACGGAGGGAGTACAACTTGAAC 59.963 50.000 0.00 0.00 0.00 3.18
4113 4213 2.612221 CGGAGGGAGTACAACTTGAACC 60.612 54.545 0.00 0.00 0.00 3.62
4114 4214 2.638363 GGAGGGAGTACAACTTGAACCT 59.362 50.000 0.00 0.00 0.00 3.50
4115 4215 3.557264 GGAGGGAGTACAACTTGAACCTG 60.557 52.174 0.00 0.00 0.00 4.00
4116 4216 3.046374 AGGGAGTACAACTTGAACCTGT 58.954 45.455 0.00 0.00 0.00 4.00
4117 4217 4.228824 AGGGAGTACAACTTGAACCTGTA 58.771 43.478 0.00 0.00 0.00 2.74
4118 4218 4.040095 AGGGAGTACAACTTGAACCTGTAC 59.960 45.833 0.00 3.90 43.71 2.90
4119 4219 4.202284 GGGAGTACAACTTGAACCTGTACA 60.202 45.833 12.61 0.00 45.09 2.90
4120 4220 4.748600 GGAGTACAACTTGAACCTGTACAC 59.251 45.833 12.61 7.24 45.09 2.90
4121 4221 5.452917 GGAGTACAACTTGAACCTGTACACT 60.453 44.000 12.61 0.00 45.09 3.55
4122 4222 6.239120 GGAGTACAACTTGAACCTGTACACTA 60.239 42.308 12.61 0.00 45.09 2.74
4123 4223 7.299246 AGTACAACTTGAACCTGTACACTAT 57.701 36.000 12.61 0.00 45.09 2.12
4124 4224 7.732996 AGTACAACTTGAACCTGTACACTATT 58.267 34.615 12.61 0.00 45.09 1.73
4125 4225 8.863086 AGTACAACTTGAACCTGTACACTATTA 58.137 33.333 12.61 0.00 45.09 0.98
4126 4226 9.136952 GTACAACTTGAACCTGTACACTATTAG 57.863 37.037 6.70 0.00 43.15 1.73
4127 4227 6.649557 ACAACTTGAACCTGTACACTATTAGC 59.350 38.462 0.00 0.00 0.00 3.09
4128 4228 6.354794 ACTTGAACCTGTACACTATTAGCA 57.645 37.500 0.00 0.00 0.00 3.49
4129 4229 6.765403 ACTTGAACCTGTACACTATTAGCAA 58.235 36.000 0.00 0.00 0.00 3.91
4130 4230 7.221450 ACTTGAACCTGTACACTATTAGCAAA 58.779 34.615 0.00 0.00 0.00 3.68
4131 4231 7.717875 ACTTGAACCTGTACACTATTAGCAAAA 59.282 33.333 0.00 0.00 0.00 2.44
4132 4232 8.453238 TTGAACCTGTACACTATTAGCAAAAA 57.547 30.769 0.00 0.00 0.00 1.94
4288 4391 6.015180 GTGCATGTTCCATATTACCCATTCAT 60.015 38.462 0.00 0.00 0.00 2.57
4289 4392 6.209192 TGCATGTTCCATATTACCCATTCATC 59.791 38.462 0.00 0.00 0.00 2.92
4352 4455 4.208666 GTCTGTTGGAGTACAAAGACGAAC 59.791 45.833 11.98 0.00 41.58 3.95
4613 4728 2.282674 CACTGGGCATGGCACTGT 60.283 61.111 22.06 16.11 44.56 3.55
4673 4788 4.851214 AGCTCGCCCTCCTCCTCC 62.851 72.222 0.00 0.00 0.00 4.30
4674 4789 4.851214 GCTCGCCCTCCTCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
4675 4790 2.520741 CTCGCCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
4676 4791 4.144727 TCGCCCTCCTCCTCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
4677 4792 4.150454 CGCCCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
4678 4793 2.123033 GCCCTCCTCCTCCTCCTC 60.123 72.222 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.595823 TTACTTAATAGTTCGAGGGATCAAAAG 57.404 33.333 0.00 0.00 35.78 2.27
1 2 9.595823 CTTACTTAATAGTTCGAGGGATCAAAA 57.404 33.333 0.00 0.00 35.78 2.44
2 3 8.974238 TCTTACTTAATAGTTCGAGGGATCAAA 58.026 33.333 0.00 0.00 35.78 2.69
3 4 8.529424 TCTTACTTAATAGTTCGAGGGATCAA 57.471 34.615 0.00 0.00 35.78 2.57
4 5 8.529424 TTCTTACTTAATAGTTCGAGGGATCA 57.471 34.615 0.00 0.00 35.78 2.92
5 6 9.984190 ATTTCTTACTTAATAGTTCGAGGGATC 57.016 33.333 0.00 0.00 35.78 3.36
7 8 9.595823 CAATTTCTTACTTAATAGTTCGAGGGA 57.404 33.333 0.00 0.00 35.78 4.20
8 9 9.379791 ACAATTTCTTACTTAATAGTTCGAGGG 57.620 33.333 0.00 0.00 35.78 4.30
21 22 9.860898 GCTGATTCCATTAACAATTTCTTACTT 57.139 29.630 0.00 0.00 0.00 2.24
22 23 8.470002 GGCTGATTCCATTAACAATTTCTTACT 58.530 33.333 0.00 0.00 0.00 2.24
23 24 7.432252 CGGCTGATTCCATTAACAATTTCTTAC 59.568 37.037 0.00 0.00 0.00 2.34
24 25 7.122055 ACGGCTGATTCCATTAACAATTTCTTA 59.878 33.333 0.00 0.00 0.00 2.10
25 26 6.071391 ACGGCTGATTCCATTAACAATTTCTT 60.071 34.615 0.00 0.00 0.00 2.52
26 27 5.418840 ACGGCTGATTCCATTAACAATTTCT 59.581 36.000 0.00 0.00 0.00 2.52
27 28 5.650543 ACGGCTGATTCCATTAACAATTTC 58.349 37.500 0.00 0.00 0.00 2.17
28 29 5.659440 ACGGCTGATTCCATTAACAATTT 57.341 34.783 0.00 0.00 0.00 1.82
29 30 5.659440 AACGGCTGATTCCATTAACAATT 57.341 34.783 0.00 0.00 0.00 2.32
30 31 6.321181 ACATAACGGCTGATTCCATTAACAAT 59.679 34.615 0.00 0.00 0.00 2.71
31 32 5.650266 ACATAACGGCTGATTCCATTAACAA 59.350 36.000 0.00 0.00 0.00 2.83
32 33 5.189928 ACATAACGGCTGATTCCATTAACA 58.810 37.500 0.00 0.00 0.00 2.41
33 34 5.751243 ACATAACGGCTGATTCCATTAAC 57.249 39.130 0.00 0.00 0.00 2.01
34 35 5.761234 GGTACATAACGGCTGATTCCATTAA 59.239 40.000 0.00 0.00 0.00 1.40
35 36 5.302360 GGTACATAACGGCTGATTCCATTA 58.698 41.667 0.00 0.00 0.00 1.90
36 37 4.134563 GGTACATAACGGCTGATTCCATT 58.865 43.478 0.00 0.00 0.00 3.16
37 38 3.496160 GGGTACATAACGGCTGATTCCAT 60.496 47.826 0.00 0.00 0.00 3.41
38 39 2.158871 GGGTACATAACGGCTGATTCCA 60.159 50.000 0.00 0.00 0.00 3.53
39 40 2.158871 TGGGTACATAACGGCTGATTCC 60.159 50.000 0.00 0.00 0.00 3.01
40 41 3.131396 CTGGGTACATAACGGCTGATTC 58.869 50.000 0.00 0.00 0.00 2.52
41 42 2.769663 TCTGGGTACATAACGGCTGATT 59.230 45.455 0.00 0.00 0.00 2.57
42 43 2.394632 TCTGGGTACATAACGGCTGAT 58.605 47.619 0.00 0.00 0.00 2.90
43 44 1.855295 TCTGGGTACATAACGGCTGA 58.145 50.000 0.00 0.00 0.00 4.26
44 45 2.102420 TGATCTGGGTACATAACGGCTG 59.898 50.000 0.00 0.00 0.00 4.85
45 46 2.394632 TGATCTGGGTACATAACGGCT 58.605 47.619 0.00 0.00 0.00 5.52
46 47 2.902705 TGATCTGGGTACATAACGGC 57.097 50.000 0.00 0.00 0.00 5.68
47 48 4.119862 CACTTGATCTGGGTACATAACGG 58.880 47.826 0.00 0.00 0.00 4.44
48 49 3.555956 GCACTTGATCTGGGTACATAACG 59.444 47.826 0.00 0.00 0.00 3.18
49 50 4.513442 TGCACTTGATCTGGGTACATAAC 58.487 43.478 0.00 0.00 0.00 1.89
50 51 4.835284 TGCACTTGATCTGGGTACATAA 57.165 40.909 0.00 0.00 0.00 1.90
51 52 4.019771 TGTTGCACTTGATCTGGGTACATA 60.020 41.667 0.00 0.00 0.00 2.29
52 53 3.244875 TGTTGCACTTGATCTGGGTACAT 60.245 43.478 0.00 0.00 0.00 2.29
53 54 2.105649 TGTTGCACTTGATCTGGGTACA 59.894 45.455 0.00 0.00 0.00 2.90
54 55 2.744202 CTGTTGCACTTGATCTGGGTAC 59.256 50.000 0.00 0.00 0.00 3.34
55 56 2.875672 GCTGTTGCACTTGATCTGGGTA 60.876 50.000 0.00 0.00 39.41 3.69
56 57 1.901591 CTGTTGCACTTGATCTGGGT 58.098 50.000 0.00 0.00 0.00 4.51
57 58 0.524862 GCTGTTGCACTTGATCTGGG 59.475 55.000 0.00 0.00 39.41 4.45
58 59 1.241165 TGCTGTTGCACTTGATCTGG 58.759 50.000 0.00 0.00 45.31 3.86
69 70 8.850452 GTTATAAGTAAGAATTGTTGCTGTTGC 58.150 33.333 6.70 0.00 40.20 4.17
70 71 9.891828 TGTTATAAGTAAGAATTGTTGCTGTTG 57.108 29.630 6.70 0.00 0.00 3.33
230 231 0.037303 ACCACATGAGACAAGGCAGG 59.963 55.000 0.00 0.00 0.00 4.85
243 244 1.915489 TCCATGGCACTAAGACCACAT 59.085 47.619 6.96 0.00 39.19 3.21
261 262 0.909610 TCAGGATCCACACCACCTCC 60.910 60.000 15.82 0.00 0.00 4.30
267 268 0.698818 AAGGGTTCAGGATCCACACC 59.301 55.000 15.82 15.68 0.00 4.16
268 269 1.073923 ACAAGGGTTCAGGATCCACAC 59.926 52.381 15.82 4.47 0.00 3.82
276 277 1.032014 CACACCAACAAGGGTTCAGG 58.968 55.000 0.00 0.00 43.89 3.86
279 280 1.318576 CCTCACACCAACAAGGGTTC 58.681 55.000 0.00 0.00 43.89 3.62
282 283 4.500265 CCCTCACACCAACAAGGG 57.500 61.111 0.00 0.00 43.89 3.95
289 290 0.105760 AAAACATGGCCCTCACACCA 60.106 50.000 0.00 0.00 41.06 4.17
292 293 1.047002 CCAAAAACATGGCCCTCACA 58.953 50.000 0.00 0.00 32.78 3.58
294 295 1.901159 CATCCAAAAACATGGCCCTCA 59.099 47.619 0.00 0.00 40.46 3.86
301 302 5.058490 ACTCAAAAGCCATCCAAAAACATG 58.942 37.500 0.00 0.00 0.00 3.21
344 345 5.828328 GGGGAGAACCTTATTCCATGTTTAG 59.172 44.000 0.00 0.00 40.03 1.85
345 346 5.254267 TGGGGAGAACCTTATTCCATGTTTA 59.746 40.000 0.00 0.00 40.03 2.01
346 347 4.045334 TGGGGAGAACCTTATTCCATGTTT 59.955 41.667 0.00 0.00 40.03 2.83
347 348 3.596046 TGGGGAGAACCTTATTCCATGTT 59.404 43.478 0.00 0.00 40.03 2.71
348 349 3.053619 GTGGGGAGAACCTTATTCCATGT 60.054 47.826 0.00 0.00 40.03 3.21
349 350 3.555966 GTGGGGAGAACCTTATTCCATG 58.444 50.000 0.00 0.00 40.03 3.66
350 351 2.514160 GGTGGGGAGAACCTTATTCCAT 59.486 50.000 0.00 0.00 40.03 3.41
351 352 1.920351 GGTGGGGAGAACCTTATTCCA 59.080 52.381 0.00 0.00 40.03 3.53
369 400 2.365635 CCGGGATGGAGACTGGGT 60.366 66.667 0.00 0.00 42.00 4.51
372 403 0.686441 TACCACCGGGATGGAGACTG 60.686 60.000 17.59 0.00 43.02 3.51
375 406 0.042131 AAGTACCACCGGGATGGAGA 59.958 55.000 17.59 2.61 43.02 3.71
387 418 4.101585 CCTCCAATGATGCTAGAAGTACCA 59.898 45.833 0.00 0.00 0.00 3.25
391 422 2.158696 GCCCTCCAATGATGCTAGAAGT 60.159 50.000 0.00 0.00 0.00 3.01
405 436 1.434513 AAACCTCCACATGCCCTCCA 61.435 55.000 0.00 0.00 0.00 3.86
441 472 2.671396 ACAAATGTCAATCGACTACCGC 59.329 45.455 0.00 0.00 43.06 5.68
466 497 2.422479 CGAACGAAGACTAGATCCACCA 59.578 50.000 0.00 0.00 0.00 4.17
467 498 2.422832 ACGAACGAAGACTAGATCCACC 59.577 50.000 0.00 0.00 0.00 4.61
493 524 9.256228 AGTATCCGGACATATAGACACATAAAT 57.744 33.333 6.12 0.00 0.00 1.40
506 537 6.404403 GCATAGATCGAAAGTATCCGGACATA 60.404 42.308 6.12 0.00 0.00 2.29
511 542 4.442375 AGCATAGATCGAAAGTATCCGG 57.558 45.455 0.00 0.00 0.00 5.14
529 560 0.458543 GTCGCCGATGAAGAGAAGCA 60.459 55.000 0.00 0.00 0.00 3.91
541 572 2.093306 AGAACATCAATTGTCGCCGA 57.907 45.000 5.13 0.00 37.68 5.54
545 576 3.782250 GCGCACTAGAACATCAATTGTCG 60.782 47.826 0.30 0.32 37.68 4.35
547 578 3.125829 CAGCGCACTAGAACATCAATTGT 59.874 43.478 11.47 0.00 41.53 2.71
549 580 2.679837 CCAGCGCACTAGAACATCAATT 59.320 45.455 11.47 0.00 0.00 2.32
554 585 0.108138 GGACCAGCGCACTAGAACAT 60.108 55.000 11.47 0.00 0.00 2.71
582 613 5.291128 ACAGTCTGAAAGTTGTCGTGTTAAG 59.709 40.000 6.91 0.00 29.49 1.85
590 621 6.736123 TGTAGTAGACAGTCTGAAAGTTGTC 58.264 40.000 13.84 0.00 44.21 3.18
600 631 6.281405 CAAACCTTGTTGTAGTAGACAGTCT 58.719 40.000 8.50 8.50 39.88 3.24
604 635 4.131596 GGCAAACCTTGTTGTAGTAGACA 58.868 43.478 0.00 0.00 35.78 3.41
614 645 1.119684 GGAGTTGGGCAAACCTTGTT 58.880 50.000 0.00 0.00 39.85 2.83
635 666 0.908198 GTGACTTGCCTCTCCCTCAT 59.092 55.000 0.00 0.00 0.00 2.90
644 675 0.977395 GACCACCTAGTGACTTGCCT 59.023 55.000 0.00 0.00 35.23 4.75
648 679 3.008813 TCTCGTAGACCACCTAGTGACTT 59.991 47.826 0.00 0.00 35.23 3.01
650 681 2.677337 GTCTCGTAGACCACCTAGTGAC 59.323 54.545 0.00 0.00 39.28 3.67
651 682 2.983229 GTCTCGTAGACCACCTAGTGA 58.017 52.381 0.00 0.00 39.28 3.41
671 742 8.531146 ACACCAGAAATAAAATTTACATCCAGG 58.469 33.333 0.00 0.00 0.00 4.45
688 759 7.340743 TCAAAATAGGACAAAGAACACCAGAAA 59.659 33.333 0.00 0.00 0.00 2.52
696 767 9.696917 ATCAACAATCAAAATAGGACAAAGAAC 57.303 29.630 0.00 0.00 0.00 3.01
803 874 8.721133 ATCCCTCAAAACTTAATACCAAAAGT 57.279 30.769 0.00 0.00 37.54 2.66
857 928 8.775527 GGATTCTCGTCTTATCCTTTTAATTCC 58.224 37.037 0.00 0.00 35.90 3.01
858 929 9.549078 AGGATTCTCGTCTTATCCTTTTAATTC 57.451 33.333 0.00 0.00 44.42 2.17
863 934 8.705594 TGATTAGGATTCTCGTCTTATCCTTTT 58.294 33.333 8.05 0.00 44.42 2.27
920 992 0.033504 TCGTCACTGCAGAGAAACCC 59.966 55.000 23.35 5.04 0.00 4.11
959 1032 0.107654 CGGGGACTGGGATTTCTGTC 60.108 60.000 0.00 0.00 35.67 3.51
1176 1249 3.555168 GCCGGTCAAAGAGAAAGAGAAGA 60.555 47.826 1.90 0.00 0.00 2.87
1200 1273 0.387239 GTGGTCTCAATTTGTGCCGC 60.387 55.000 0.00 3.66 0.00 6.53
1263 1336 3.596214 GCAGAACCCAATCTAGTTCGAA 58.404 45.455 0.00 0.00 45.60 3.71
1320 1393 5.095145 TCATCCAGACAGAAATCAAGGAG 57.905 43.478 0.00 0.00 31.19 3.69
1352 1425 4.595538 GTGCACGTCCCGGACACA 62.596 66.667 17.87 9.31 36.99 3.72
1414 1487 0.034198 TGTGGCATCGAAGACGGAAA 59.966 50.000 0.00 0.00 42.51 3.13
1493 1569 1.902918 ATTTGGCAAGTGCTCCGCA 60.903 52.632 0.00 0.00 41.70 5.69
1519 1597 0.179056 TAAGCTAGACGGCCCATTGC 60.179 55.000 0.00 0.00 40.16 3.56
1523 1601 2.224572 TGTTTTTAAGCTAGACGGCCCA 60.225 45.455 0.00 0.00 0.00 5.36
1529 1607 6.846350 ACTCATGCATGTTTTTAAGCTAGAC 58.154 36.000 25.43 0.00 0.00 2.59
1537 1615 5.252547 TGGCTAGACTCATGCATGTTTTTA 58.747 37.500 25.43 12.11 0.00 1.52
1547 1626 5.047802 ACAACCATTTTTGGCTAGACTCATG 60.048 40.000 0.00 0.00 0.00 3.07
1559 1638 5.600696 ACTTTCAGCCTACAACCATTTTTG 58.399 37.500 0.00 0.00 0.00 2.44
1581 1660 3.119779 TGAAACGTTTGTGGGTCAAAGAC 60.120 43.478 20.10 0.00 45.15 3.01
1770 1853 9.308000 CCCCTAATAATTAAACAATCTGCCATA 57.692 33.333 0.00 0.00 0.00 2.74
1788 1871 3.046374 GAGTGGCCTTCTTCCCCTAATA 58.954 50.000 3.32 0.00 0.00 0.98
1902 1985 1.615424 GTAAGAGGACCCAGGGCCA 60.615 63.158 12.24 0.00 0.00 5.36
1903 1986 1.307084 AGTAAGAGGACCCAGGGCC 60.307 63.158 4.91 8.24 0.00 5.80
1904 1987 1.338890 GGAGTAAGAGGACCCAGGGC 61.339 65.000 4.91 0.00 0.00 5.19
1905 1988 0.340208 AGGAGTAAGAGGACCCAGGG 59.660 60.000 2.85 2.85 0.00 4.45
1906 1989 1.273324 ACAGGAGTAAGAGGACCCAGG 60.273 57.143 0.00 0.00 0.00 4.45
1912 1995 2.248248 CCACACACAGGAGTAAGAGGA 58.752 52.381 0.00 0.00 0.00 3.71
2027 2110 4.181578 GCATCTTGCAAAGCATGAAGATT 58.818 39.130 14.11 0.00 45.70 2.40
2109 2192 7.519843 CATACTGAATTGAGCAGCAGATAATC 58.480 38.462 0.00 0.00 36.86 1.75
2139 2222 1.098050 AATCAGGACCGCATTCAAGC 58.902 50.000 0.00 0.00 0.00 4.01
2150 2233 1.341383 ACCATGAGGCCAAATCAGGAC 60.341 52.381 5.01 0.00 39.06 3.85
2161 2244 3.084786 GCATAAGGGATAACCATGAGGC 58.915 50.000 0.00 0.00 43.89 4.70
2163 2246 4.978099 ACTGCATAAGGGATAACCATGAG 58.022 43.478 0.00 0.00 43.89 2.90
2193 2276 1.337703 GTTTGCAGGTCAGCATGTGAA 59.662 47.619 0.00 0.00 45.19 3.18
2349 2432 9.689976 CCACATGTTAAATAATTCAGTGAAACA 57.310 29.630 10.14 8.13 41.43 2.83
2350 2433 8.647226 GCCACATGTTAAATAATTCAGTGAAAC 58.353 33.333 10.14 2.18 0.00 2.78
2412 2495 4.741928 AAACCAAGTAAGGGTCCTCAAT 57.258 40.909 0.00 0.00 37.77 2.57
2475 2558 7.086685 ACCTAACAAGGGTGAAGAAATAGAA 57.913 36.000 0.00 0.00 35.51 2.10
2762 2845 4.457949 CCACCCAAACGAAGTATAAAAGCT 59.542 41.667 0.00 0.00 45.00 3.74
2905 2988 4.887071 TCATAGGTGCAAATACATTGGTCC 59.113 41.667 0.00 0.00 39.54 4.46
3072 3157 5.803967 ACGAAACAAGAATAGTCGTCATACC 59.196 40.000 0.00 0.00 40.71 2.73
3163 3248 1.000955 TCCCTCAACTTCTGTCTTCGC 59.999 52.381 0.00 0.00 0.00 4.70
3397 3484 4.031878 GCGAGAGAGAAATACAAACGAAGG 59.968 45.833 0.00 0.00 0.00 3.46
3530 3618 6.346477 AGCTTACAGAACATGACTAGAACA 57.654 37.500 0.00 0.00 0.00 3.18
3536 3624 7.986085 AAACATAAGCTTACAGAACATGACT 57.014 32.000 8.70 0.00 0.00 3.41
3541 3629 7.801716 ACTGAAAACATAAGCTTACAGAACA 57.198 32.000 20.35 11.48 0.00 3.18
3587 3675 3.711704 ACCAATTATCAGTCTCCGGATGT 59.288 43.478 3.57 0.00 0.00 3.06
3599 3687 5.581479 GCATTGCATGTGAAACCAATTATCA 59.419 36.000 3.15 0.00 34.36 2.15
3608 3696 1.273048 TCCTGGCATTGCATGTGAAAC 59.727 47.619 11.39 0.00 37.35 2.78
3613 3701 2.154567 ATCTTCCTGGCATTGCATGT 57.845 45.000 11.39 0.00 0.00 3.21
3616 3704 4.436113 TGTATATCTTCCTGGCATTGCA 57.564 40.909 11.39 0.00 0.00 4.08
3617 3705 5.242393 ACATTGTATATCTTCCTGGCATTGC 59.758 40.000 0.00 0.00 0.00 3.56
3751 3851 6.490534 GTTTTTCAGCAGCTATAATCCTGTC 58.509 40.000 0.00 0.00 0.00 3.51
3756 3856 4.335594 ACCCGTTTTTCAGCAGCTATAATC 59.664 41.667 0.00 0.00 0.00 1.75
3787 3887 2.285083 CAGTTCCTGTTTCAACCGACA 58.715 47.619 0.00 0.00 0.00 4.35
3804 3904 2.359975 GCAAGCCTAACGCCCAGT 60.360 61.111 0.00 0.00 38.78 4.00
3834 3934 1.117994 TACTCTGCAGCCCTGATCTG 58.882 55.000 9.47 0.00 34.79 2.90
3837 3937 2.406559 AGAATACTCTGCAGCCCTGAT 58.593 47.619 9.47 0.00 0.00 2.90
3868 3968 0.391130 CACTGATTTCCCTCGGCGAA 60.391 55.000 12.13 0.00 0.00 4.70
3870 3970 0.179073 ATCACTGATTTCCCTCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
3871 3971 1.303309 CATCACTGATTTCCCTCGGC 58.697 55.000 0.00 0.00 0.00 5.54
3872 3972 2.283298 CACATCACTGATTTCCCTCGG 58.717 52.381 0.00 0.00 0.00 4.63
3921 4021 6.183360 GGAGTATCATCCAAACCAAAGGATTG 60.183 42.308 0.00 0.00 41.80 2.67
3929 4029 3.455910 CAGAGGGAGTATCATCCAAACCA 59.544 47.826 0.00 0.00 41.52 3.67
3931 4031 5.512232 GGATCAGAGGGAGTATCATCCAAAC 60.512 48.000 0.00 0.00 41.52 2.93
3934 4034 3.404081 AGGATCAGAGGGAGTATCATCCA 59.596 47.826 0.00 0.00 41.52 3.41
3936 4036 7.732222 ATTTAGGATCAGAGGGAGTATCATC 57.268 40.000 0.00 0.00 36.25 2.92
3941 4041 9.756571 GACTTATATTTAGGATCAGAGGGAGTA 57.243 37.037 0.00 0.00 0.00 2.59
3942 4042 8.461033 AGACTTATATTTAGGATCAGAGGGAGT 58.539 37.037 0.00 0.00 0.00 3.85
3943 4043 8.893563 AGACTTATATTTAGGATCAGAGGGAG 57.106 38.462 0.00 0.00 0.00 4.30
3944 4044 9.676129 AAAGACTTATATTTAGGATCAGAGGGA 57.324 33.333 0.00 0.00 0.00 4.20
3945 4045 9.717942 CAAAGACTTATATTTAGGATCAGAGGG 57.282 37.037 0.00 0.00 0.00 4.30
3963 4063 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
3964 4064 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
3965 4065 8.254508 AGTCCATAGTGAAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 0.00 3.01
3966 4066 8.367660 AGTCCATAGTGAAATCTCTACAAAGA 57.632 34.615 0.00 0.00 0.00 2.52
3967 4067 9.522804 GTAGTCCATAGTGAAATCTCTACAAAG 57.477 37.037 0.00 0.00 0.00 2.77
3968 4068 9.031537 TGTAGTCCATAGTGAAATCTCTACAAA 57.968 33.333 0.00 0.00 34.46 2.83
3969 4069 8.589701 TGTAGTCCATAGTGAAATCTCTACAA 57.410 34.615 0.00 0.00 34.46 2.41
3970 4070 8.768501 ATGTAGTCCATAGTGAAATCTCTACA 57.231 34.615 0.00 0.00 39.19 2.74
3972 4072 9.000486 CGTATGTAGTCCATAGTGAAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
3973 4073 7.720074 TCGTATGTAGTCCATAGTGAAATCTCT 59.280 37.037 0.00 0.00 36.71 3.10
3974 4074 7.872881 TCGTATGTAGTCCATAGTGAAATCTC 58.127 38.462 0.00 0.00 36.71 2.75
3975 4075 7.818997 TCGTATGTAGTCCATAGTGAAATCT 57.181 36.000 0.00 0.00 36.71 2.40
3976 4076 7.115095 GCTTCGTATGTAGTCCATAGTGAAATC 59.885 40.741 0.00 0.00 36.71 2.17
3977 4077 6.924060 GCTTCGTATGTAGTCCATAGTGAAAT 59.076 38.462 0.00 0.00 36.71 2.17
3978 4078 6.127563 TGCTTCGTATGTAGTCCATAGTGAAA 60.128 38.462 0.00 0.00 36.71 2.69
3979 4079 5.358725 TGCTTCGTATGTAGTCCATAGTGAA 59.641 40.000 0.00 0.00 36.71 3.18
3980 4080 4.885325 TGCTTCGTATGTAGTCCATAGTGA 59.115 41.667 0.00 0.00 36.71 3.41
3981 4081 5.183014 TGCTTCGTATGTAGTCCATAGTG 57.817 43.478 0.00 0.00 36.71 2.74
3982 4082 5.847111 TTGCTTCGTATGTAGTCCATAGT 57.153 39.130 0.00 0.00 36.71 2.12
3983 4083 7.438160 TCATTTTGCTTCGTATGTAGTCCATAG 59.562 37.037 0.00 0.00 36.71 2.23
3984 4084 7.269316 TCATTTTGCTTCGTATGTAGTCCATA 58.731 34.615 0.00 0.00 34.86 2.74
3985 4085 6.112734 TCATTTTGCTTCGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
3986 4086 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
3987 4087 6.417191 TTCATTTTGCTTCGTATGTAGTCC 57.583 37.500 0.00 0.00 0.00 3.85
3988 4088 7.684670 TCATTCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
3989 4089 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
3990 4090 9.162793 GATTCATTCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
3991 4091 8.892723 AGATTCATTCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
3992 4092 7.765307 AGATTCATTCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
3993 4093 9.162793 GTAGATTCATTCATTTTGCTTCGTATG 57.837 33.333 0.00 0.00 0.00 2.39
3994 4094 8.892723 TGTAGATTCATTCATTTTGCTTCGTAT 58.107 29.630 0.00 0.00 0.00 3.06
3995 4095 8.175069 GTGTAGATTCATTCATTTTGCTTCGTA 58.825 33.333 0.00 0.00 0.00 3.43
3996 4096 7.023575 GTGTAGATTCATTCATTTTGCTTCGT 58.976 34.615 0.00 0.00 0.00 3.85
3997 4097 6.470235 GGTGTAGATTCATTCATTTTGCTTCG 59.530 38.462 0.00 0.00 0.00 3.79
3998 4098 6.753744 GGGTGTAGATTCATTCATTTTGCTTC 59.246 38.462 0.00 0.00 0.00 3.86
3999 4099 6.438425 AGGGTGTAGATTCATTCATTTTGCTT 59.562 34.615 0.00 0.00 0.00 3.91
4000 4100 5.954150 AGGGTGTAGATTCATTCATTTTGCT 59.046 36.000 0.00 0.00 0.00 3.91
4001 4101 6.212888 AGGGTGTAGATTCATTCATTTTGC 57.787 37.500 0.00 0.00 0.00 3.68
4005 4105 8.416329 GCATTTTAGGGTGTAGATTCATTCATT 58.584 33.333 0.00 0.00 0.00 2.57
4006 4106 7.560991 TGCATTTTAGGGTGTAGATTCATTCAT 59.439 33.333 0.00 0.00 0.00 2.57
4007 4107 6.889177 TGCATTTTAGGGTGTAGATTCATTCA 59.111 34.615 0.00 0.00 0.00 2.57
4008 4108 7.333528 TGCATTTTAGGGTGTAGATTCATTC 57.666 36.000 0.00 0.00 0.00 2.67
4009 4109 7.781693 AGATGCATTTTAGGGTGTAGATTCATT 59.218 33.333 0.00 0.00 0.00 2.57
4010 4110 7.293073 AGATGCATTTTAGGGTGTAGATTCAT 58.707 34.615 0.00 0.00 0.00 2.57
4011 4111 6.662755 AGATGCATTTTAGGGTGTAGATTCA 58.337 36.000 0.00 0.00 0.00 2.57
4012 4112 8.854614 ATAGATGCATTTTAGGGTGTAGATTC 57.145 34.615 0.00 0.00 0.00 2.52
4018 4118 9.672673 GATGTATATAGATGCATTTTAGGGTGT 57.327 33.333 0.00 0.00 38.38 4.16
4019 4119 9.113838 GGATGTATATAGATGCATTTTAGGGTG 57.886 37.037 0.00 0.00 38.38 4.61
4020 4120 7.987458 CGGATGTATATAGATGCATTTTAGGGT 59.013 37.037 11.19 0.00 38.38 4.34
4021 4121 7.987458 ACGGATGTATATAGATGCATTTTAGGG 59.013 37.037 11.19 0.00 38.38 3.53
4022 4122 8.948631 ACGGATGTATATAGATGCATTTTAGG 57.051 34.615 11.19 0.00 38.38 2.69
4025 4125 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
4026 4126 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
4027 4127 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
4028 4128 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
4029 4129 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
4030 4130 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
4031 4131 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
4032 4132 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
4033 4133 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
4034 4134 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
4035 4135 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
4036 4136 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
4037 4137 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
4038 4138 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
4039 4139 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
4040 4140 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
4041 4141 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
4042 4142 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
4043 4143 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
4044 4144 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
4045 4145 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
4046 4146 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
4047 4147 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
4048 4148 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
4049 4149 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
4050 4150 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
4051 4151 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
4052 4152 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
4053 4153 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
4071 4171 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
4072 4172 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4073 4173 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4074 4174 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4075 4175 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4076 4176 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4077 4177 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4078 4178 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4079 4179 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
4080 4180 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
4081 4181 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4082 4182 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4083 4183 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4084 4184 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4085 4185 2.827921 GTTGTACTCCCTCCGTTCCTAA 59.172 50.000 0.00 0.00 0.00 2.69
4086 4186 2.042162 AGTTGTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
4087 4187 1.203149 AGTTGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
4088 4188 1.264295 AGTTGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
4089 4189 2.298163 TCAAGTTGTACTCCCTCCGTTC 59.702 50.000 2.11 0.00 0.00 3.95
4090 4190 2.322658 TCAAGTTGTACTCCCTCCGTT 58.677 47.619 2.11 0.00 0.00 4.44
4091 4191 2.005370 TCAAGTTGTACTCCCTCCGT 57.995 50.000 2.11 0.00 0.00 4.69
4092 4192 2.612221 GGTTCAAGTTGTACTCCCTCCG 60.612 54.545 11.78 0.00 0.00 4.63
4093 4193 2.638363 AGGTTCAAGTTGTACTCCCTCC 59.362 50.000 11.78 0.00 0.00 4.30
4094 4194 3.071167 ACAGGTTCAAGTTGTACTCCCTC 59.929 47.826 11.78 0.00 0.00 4.30
4095 4195 3.046374 ACAGGTTCAAGTTGTACTCCCT 58.954 45.455 11.78 4.66 0.00 4.20
4096 4196 3.487120 ACAGGTTCAAGTTGTACTCCC 57.513 47.619 11.78 2.68 0.00 4.30
4097 4197 4.748600 GTGTACAGGTTCAAGTTGTACTCC 59.251 45.833 11.78 6.47 44.57 3.85
4098 4198 5.598769 AGTGTACAGGTTCAAGTTGTACTC 58.401 41.667 11.78 10.35 44.57 2.59
4099 4199 5.609533 AGTGTACAGGTTCAAGTTGTACT 57.390 39.130 11.78 2.44 44.57 2.73
4100 4200 7.958053 AATAGTGTACAGGTTCAAGTTGTAC 57.042 36.000 0.00 3.23 44.54 2.90
4101 4201 7.816031 GCTAATAGTGTACAGGTTCAAGTTGTA 59.184 37.037 0.00 0.00 0.00 2.41
4102 4202 6.649557 GCTAATAGTGTACAGGTTCAAGTTGT 59.350 38.462 0.00 0.00 0.00 3.32
4103 4203 6.649141 TGCTAATAGTGTACAGGTTCAAGTTG 59.351 38.462 0.00 0.00 0.00 3.16
4104 4204 6.765403 TGCTAATAGTGTACAGGTTCAAGTT 58.235 36.000 0.00 0.00 0.00 2.66
4105 4205 6.354794 TGCTAATAGTGTACAGGTTCAAGT 57.645 37.500 0.00 0.00 0.00 3.16
4106 4206 7.667043 TTTGCTAATAGTGTACAGGTTCAAG 57.333 36.000 0.00 0.00 0.00 3.02
4107 4207 8.453238 TTTTTGCTAATAGTGTACAGGTTCAA 57.547 30.769 0.00 0.00 0.00 2.69
4129 4229 9.283768 ACAGGTTCATGTTTTTCTTTTCTTTTT 57.716 25.926 0.00 0.00 0.00 1.94
4130 4230 8.846943 ACAGGTTCATGTTTTTCTTTTCTTTT 57.153 26.923 0.00 0.00 0.00 2.27
4131 4231 9.366216 GTACAGGTTCATGTTTTTCTTTTCTTT 57.634 29.630 0.00 0.00 34.56 2.52
4132 4232 8.527810 TGTACAGGTTCATGTTTTTCTTTTCTT 58.472 29.630 0.00 0.00 34.56 2.52
4133 4233 7.973944 GTGTACAGGTTCATGTTTTTCTTTTCT 59.026 33.333 0.00 0.00 34.56 2.52
4134 4234 7.044314 CGTGTACAGGTTCATGTTTTTCTTTTC 60.044 37.037 7.41 0.00 34.56 2.29
4135 4235 6.750039 CGTGTACAGGTTCATGTTTTTCTTTT 59.250 34.615 7.41 0.00 34.56 2.27
4136 4236 6.094325 TCGTGTACAGGTTCATGTTTTTCTTT 59.906 34.615 14.78 0.00 34.56 2.52
4137 4237 5.587043 TCGTGTACAGGTTCATGTTTTTCTT 59.413 36.000 14.78 0.00 34.56 2.52
4138 4238 5.120399 TCGTGTACAGGTTCATGTTTTTCT 58.880 37.500 14.78 0.00 34.56 2.52
4139 4239 5.412526 TCGTGTACAGGTTCATGTTTTTC 57.587 39.130 14.78 0.00 34.56 2.29
4140 4240 6.072893 GGTATCGTGTACAGGTTCATGTTTTT 60.073 38.462 14.78 0.00 34.56 1.94
4141 4241 5.410439 GGTATCGTGTACAGGTTCATGTTTT 59.590 40.000 14.78 0.00 34.56 2.43
4142 4242 4.933400 GGTATCGTGTACAGGTTCATGTTT 59.067 41.667 14.78 0.00 34.56 2.83
4143 4243 4.501071 GGTATCGTGTACAGGTTCATGTT 58.499 43.478 14.78 0.00 34.56 2.71
4144 4244 3.428452 CGGTATCGTGTACAGGTTCATGT 60.428 47.826 14.78 0.00 37.19 3.21
4145 4245 3.113322 CGGTATCGTGTACAGGTTCATG 58.887 50.000 14.78 0.00 0.00 3.07
4146 4246 2.480759 GCGGTATCGTGTACAGGTTCAT 60.481 50.000 14.78 4.73 38.89 2.57
4299 4402 8.807118 GGTATCTACTGATTCAATGGACATCTA 58.193 37.037 0.00 0.00 34.32 1.98
4300 4403 7.524532 CGGTATCTACTGATTCAATGGACATCT 60.525 40.741 0.00 0.00 34.49 2.90
4662 4777 2.197324 CGAGGAGGAGGAGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
4673 4788 3.827898 GACCTGGTCGGCGAGGAG 61.828 72.222 25.89 13.36 42.42 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.